Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276930 | XP_003627378.2 | 91.057 | 246 | 6 | 2 | 1 | 246 | 1 | 230 | 7.74e-158 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276930 | sp|Q9LQI7|CIA30_ARATH | 65.975 | 241 | 65 | 3 | 1 | 240 | 1 | 225 | 9.62e-115 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276930 | G7L8D3 | 91.057 | 246 | 6 | 2 | 1 | 246 | 1 | 230 | 3.70e-158 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004950 | Msa1276930 | 0.818175 | 2.248373e-52 | -8.615850e-47 |
| Msa0004980 | Msa1276930 | 0.812527 | 4.053001e-51 | -8.615850e-47 |
| Msa0006880 | Msa1276930 | 0.802978 | 4.340371e-49 | -8.615850e-47 |
| Msa0031510 | Msa1276930 | 0.806846 | 6.746298e-50 | -8.615850e-47 |
| Msa0032260 | Msa1276930 | 0.812371 | 4.384269e-51 | -8.615850e-47 |
| Msa0047160 | Msa1276930 | 0.800534 | 1.377980e-48 | -8.615850e-47 |
| Msa0048180 | Msa1276930 | 0.819927 | 8.978911e-53 | -8.615850e-47 |
| Msa0052350 | Msa1276930 | -0.804956 | 1.684138e-49 | -8.615850e-47 |
| Msa0052610 | Msa1276930 | 0.805118 | 1.557379e-49 | -8.615850e-47 |
| Msa0057610 | Msa1276930 | 0.811295 | 7.517886e-51 | -8.615850e-47 |
| Msa0074320 | Msa1276930 | 0.809104 | 2.231251e-50 | -8.615850e-47 |
| Msa0076040 | Msa1276930 | 0.803567 | 3.277259e-49 | -8.615850e-47 |
| Msa0082280 | Msa1276930 | 0.805517 | 1.284755e-49 | -8.615850e-47 |
| Msa0094950 | Msa1276930 | 0.811987 | 5.318436e-51 | -8.615850e-47 |
| Msa0111330 | Msa1276930 | 0.806297 | 8.808849e-50 | -8.615850e-47 |
| Msa0610390 | Msa1276930 | 0.815536 | 8.792070e-52 | -8.615850e-47 |
| Msa0618310 | Msa1276930 | 0.829842 | 4.105605e-55 | -8.615850e-47 |
| Msa0620990 | Msa1276930 | 0.801049 | 1.081571e-48 | -8.615850e-47 |
| Msa0631250 | Msa1276930 | 0.807468 | 4.980583e-50 | -8.615850e-47 |
| Msa0647490 | Msa1276930 | 0.819311 | 1.241433e-52 | -8.615850e-47 |
| Msa0650920 | Msa1276930 | 0.812248 | 4.665477e-51 | -8.615850e-47 |
| Msa0654870 | Msa1276930 | 0.829585 | 4.741301e-55 | -8.615850e-47 |
| Msa0657790 | Msa1276930 | 0.813488 | 2.495160e-51 | -8.615850e-47 |
| Msa0659030 | Msa1276930 | 0.817082 | 3.965567e-52 | -8.615850e-47 |
| Msa0666230 | Msa1276930 | 0.832491 | 9.171787e-56 | -8.615850e-47 |
| Msa0669760 | Msa1276930 | 0.809864 | 1.532242e-50 | -8.615850e-47 |
| Msa0680240 | Msa1276930 | 0.801880 | 7.306451e-49 | -8.615850e-47 |
| Msa0683780 | Msa1276930 | 0.826386 | 2.791503e-54 | -8.615850e-47 |
| Msa0687630 | Msa1276930 | 0.840466 | 8.549909e-58 | -8.615850e-47 |
| Msa0702100 | Msa1276930 | 0.804445 | 2.152792e-49 | -8.615850e-47 |
| Msa0703230 | Msa1276930 | 0.816894 | 4.370141e-52 | -8.615850e-47 |
| Msa0705000 | Msa1276930 | 0.829062 | 6.351280e-55 | -8.615850e-47 |
| Msa0705040 | Msa1276930 | 0.836852 | 7.337804e-57 | -8.615850e-47 |
| Msa0707390 | Msa1276930 | 0.833666 | 4.679298e-56 | -8.615850e-47 |
| Msa0735310 | Msa1276930 | 0.800091 | 1.695826e-48 | -8.615850e-47 |
| Msa0738100 | Msa1276930 | 0.804299 | 2.309088e-49 | -8.615850e-47 |
| Msa0747700 | Msa1276930 | 0.823979 | 1.034843e-53 | -8.615850e-47 |
| Msa0750920 | Msa1276930 | 0.826364 | 2.825585e-54 | -8.615850e-47 |
| Msa0785130 | Msa1276930 | 0.826741 | 2.296724e-54 | -8.615850e-47 |
| Msa0806880 | Msa1276930 | 0.805510 | 1.289077e-49 | -8.615850e-47 |
| Msa0806920 | Msa1276930 | 0.811051 | 8.494714e-51 | -8.615850e-47 |
| Msa0814250 | Msa1276930 | 0.808273 | 3.358987e-50 | -8.615850e-47 |
| Msa0818770 | Msa1276930 | 0.801472 | 8.861163e-49 | -8.615850e-47 |
| Msa0824640 | Msa1276930 | 0.808857 | 2.520292e-50 | -8.615850e-47 |
| Msa0121590 | Msa1276930 | 0.801484 | 8.809685e-49 | -8.615850e-47 |
| Msa0121820 | Msa1276930 | 0.802237 | 6.171591e-49 | -8.615850e-47 |
| Msa0127310 | Msa1276930 | 0.811366 | 7.257321e-51 | -8.615850e-47 |
| Msa0128860 | Msa1276930 | 0.818069 | 2.375772e-52 | -8.615850e-47 |
| Msa0155430 | Msa1276930 | 0.800576 | 1.350793e-48 | -8.615850e-47 |
| Msa0165950 | Msa1276930 | 0.818548 | 1.851166e-52 | -8.615850e-47 |
| Msa0166750 | Msa1276930 | 0.837335 | 5.524202e-57 | -8.615850e-47 |
| Msa0167480 | Msa1276930 | 0.836243 | 1.048985e-56 | -8.615850e-47 |
| Msa0174730 | Msa1276930 | 0.816432 | 5.547054e-52 | -8.615850e-47 |
| Msa0174770 | Msa1276930 | 0.823635 | 1.245947e-53 | -8.615850e-47 |
| Msa0180020 | Msa1276930 | 0.843505 | 1.344420e-58 | -8.615850e-47 |
| Msa0181610 | Msa1276930 | 0.828339 | 9.497914e-55 | -8.615850e-47 |
| Msa0183460 | Msa1276930 | 0.824057 | 9.916742e-54 | -8.615850e-47 |
| Msa0186890 | Msa1276930 | 0.815849 | 7.488316e-52 | -8.615850e-47 |
| Msa0187690 | Msa1276930 | 0.805479 | 1.308627e-49 | -8.615850e-47 |
| Msa0187930 | Msa1276930 | 0.844957 | 5.479618e-59 | -8.615850e-47 |
| Msa0194540 | Msa1276930 | 0.851318 | 9.593600e-61 | -8.615850e-47 |
| Msa0199690 | Msa1276930 | 0.816458 | 5.474497e-52 | -8.615850e-47 |
| Msa0236270 | Msa1276930 | 0.821454 | 4.003056e-53 | -8.615850e-47 |
| Msa1227690 | Msa1276930 | 0.854887 | 9.120250e-62 | -8.615850e-47 |
| Msa1234680 | Msa1276930 | 0.857195 | 1.926295e-62 | -8.615850e-47 |
| Msa1234980 | Msa1276930 | 0.838313 | 3.096546e-57 | -8.615850e-47 |
| Msa1254710 | Msa1276930 | 0.812640 | 3.828730e-51 | -8.615850e-47 |
| Msa1270620 | Msa1276930 | 0.828076 | 1.099290e-54 | -8.615850e-47 |
| Msa1270690 | Msa1276930 | 0.825295 | 5.068220e-54 | -8.615850e-47 |
| Msa1272460 | Msa1276930 | 0.801030 | 1.091262e-48 | -8.615850e-47 |
| Msa1276930 | Msa1281190 | 0.800935 | 1.141395e-48 | -8.615850e-47 |
| Msa1276930 | Msa1286510 | 0.808123 | 3.615738e-50 | -8.615850e-47 |
| Msa1276930 | Msa1294840 | 0.814454 | 1.528141e-51 | -8.615850e-47 |
| Msa1276930 | Msa1306990 | 0.821729 | 3.458138e-53 | -8.615850e-47 |
| Msa1276930 | Msa1307950 | 0.814524 | 1.474539e-51 | -8.615850e-47 |
| Msa1276930 | Msa1310690 | 0.849030 | 4.199174e-60 | -8.615850e-47 |
| Msa1276930 | Msa1315100 | 0.843461 | 1.381121e-58 | -8.615850e-47 |
| Msa1276930 | Msa1329540 | 0.802828 | 4.661591e-49 | -8.615850e-47 |
| Msa1276930 | Msa1331710 | 0.812576 | 3.955439e-51 | -8.615850e-47 |
| Msa1276930 | Msa1345450 | 0.829483 | 5.018930e-55 | -8.615850e-47 |
| Msa1276930 | Msa1349570 | 0.845809 | 3.220844e-59 | -8.615850e-47 |
| Msa1276930 | Msa1363330 | 0.845268 | 4.514769e-59 | -8.615850e-47 |
| Msa1276930 | Msa1363860 | 0.807238 | 5.572711e-50 | -8.615850e-47 |
| Msa1276930 | Msa1365150 | 0.817526 | 3.150028e-52 | -8.615850e-47 |
| Msa1276930 | Msa1369190 | 0.842944 | 1.898056e-58 | -8.615850e-47 |
| Msa1276930 | Msa1370860 | 0.819126 | 1.368045e-52 | -8.615850e-47 |
| Msa1276930 | Msa1379760 | 0.829563 | 4.800852e-55 | -8.615850e-47 |
| Msa1276930 | Msa1386600 | 0.845158 | 4.834812e-59 | -8.615850e-47 |
| Msa1276930 | Msa1404190 | 0.835186 | 1.942913e-56 | -8.615850e-47 |
| Msa1276930 | Msa1413500 | 0.806862 | 6.693791e-50 | -8.615850e-47 |
| Msa1276930 | Msa1418960 | -0.812712 | 3.692773e-51 | -8.615850e-47 |
| Msa1276930 | Msa1427560 | 0.812842 | 3.458121e-51 | -8.615850e-47 |
| Msa1276930 | Msa1438640 | 0.837030 | 6.609200e-57 | -8.615850e-47 |
| Msa1276930 | Msa1442850 | 0.862097 | 6.449881e-64 | -8.615850e-47 |
| Msa1276930 | Msa1448690 | 0.830725 | 2.498048e-55 | -8.615850e-47 |
| Msa1276930 | Msa1450280 | 0.843815 | 1.110634e-58 | -8.615850e-47 |
| Msa1276930 | Msa1461490 | 0.822037 | 2.933965e-53 | -8.615850e-47 |
| Msa1276930 | Msa1462860 | 0.840375 | 9.031633e-58 | -8.615850e-47 |
| Msa1276930 | Msa1465080 | 0.831193 | 1.917673e-55 | -8.615850e-47 |
| Msa0370160 | Msa1276930 | -0.828577 | 8.321308e-55 | -8.615850e-47 |
| Msa0376690 | Msa1276930 | 0.820857 | 5.494472e-53 | -8.615850e-47 |
| Msa0384880 | Msa1276930 | 0.801652 | 8.138628e-49 | -8.615850e-47 |
| Msa0394400 | Msa1276930 | 0.831348 | 1.756482e-55 | -8.615850e-47 |
| Msa0402330 | Msa1276930 | 0.815244 | 1.021250e-51 | -8.615850e-47 |
| Msa0408240 | Msa1276930 | -0.815148 | 1.072357e-51 | -8.615850e-47 |
| Msa0416400 | Msa1276930 | 0.838190 | 3.331481e-57 | -8.615850e-47 |
| Msa0419520 | Msa1276930 | 0.806455 | 8.156487e-50 | -8.615850e-47 |
| Msa0429210 | Msa1276930 | 0.813315 | 2.723441e-51 | -8.615850e-47 |
| Msa0437690 | Msa1276930 | -0.839458 | 1.565443e-57 | -8.615850e-47 |
| Msa0443390 | Msa1276930 | 0.835003 | 2.161169e-56 | -8.615850e-47 |
| Msa0458060 | Msa1276930 | 0.801768 | 7.705699e-49 | -8.615850e-47 |
| Msa0471590 | Msa1276930 | 0.821462 | 3.986943e-53 | -8.615850e-47 |
| Msa0994290 | Msa1276930 | 0.810201 | 1.296610e-50 | -8.615850e-47 |
| Msa1019240 | Msa1276930 | 0.845696 | 3.456893e-59 | -8.615850e-47 |
| Msa1019260 | Msa1276930 | 0.838384 | 2.969093e-57 | -8.615850e-47 |
| Msa1025940 | Msa1276930 | 0.826605 | 2.474693e-54 | -8.615850e-47 |
| Msa1073400 | Msa1276930 | 0.823429 | 1.391751e-53 | -8.615850e-47 |
| Msa1081150 | Msa1276930 | 0.812718 | 3.682647e-51 | -8.615850e-47 |
| Msa1104140 | Msa1276930 | 0.816962 | 4.218388e-52 | -8.615850e-47 |
| Msa1104210 | Msa1276930 | 0.841137 | 5.700835e-58 | -8.615850e-47 |
| Msa0244780 | Msa1276930 | 0.842097 | 3.182667e-58 | -8.615850e-47 |
| Msa0260240 | Msa1276930 | 0.810609 | 1.058711e-50 | -8.615850e-47 |
| Msa0260280 | Msa1276930 | 0.813383 | 2.631851e-51 | -8.615850e-47 |
| Msa0262480 | Msa1276930 | 0.809348 | 1.977873e-50 | -8.615850e-47 |
| Msa0264570 | Msa1276930 | 0.802029 | 6.810501e-49 | -8.615850e-47 |
| Msa0268130 | Msa1276930 | 0.844109 | 9.263482e-59 | -8.615850e-47 |
| Msa0280430 | Msa1276930 | 0.835033 | 2.123440e-56 | -8.615850e-47 |
| Msa0291520 | Msa1276930 | 0.834194 | 3.450863e-56 | -8.615850e-47 |
| Msa0298990 | Msa1276930 | 0.834486 | 2.915995e-56 | -8.615850e-47 |
| Msa0300350 | Msa1276930 | 0.813841 | 2.087126e-51 | -8.615850e-47 |
| Msa0304260 | Msa1276930 | 0.803181 | 3.941033e-49 | -8.615850e-47 |
| Msa0304590 | Msa1276930 | 0.839558 | 1.475183e-57 | -8.615850e-47 |
| Msa0304660 | Msa1276930 | 0.829680 | 4.496458e-55 | -8.615850e-47 |
| Msa0331700 | Msa1276930 | 0.832859 | 7.430017e-56 | -8.615850e-47 |
| Msa0337650 | Msa1276930 | 0.814496 | 1.495462e-51 | -8.615850e-47 |
| Msa0347680 | Msa1276930 | 0.812217 | 4.738527e-51 | -8.615850e-47 |
| Msa0348830 | Msa1276930 | 0.810009 | 1.426288e-50 | -8.615850e-47 |
| Msa0355270 | Msa1276930 | 0.815091 | 1.104011e-51 | -8.615850e-47 |
| Msa1126510 | Msa1276930 | 0.821168 | 4.659033e-53 | -8.615850e-47 |
| Msa1126770 | Msa1276930 | 0.836030 | 1.187979e-56 | -8.615850e-47 |
| Msa1131170 | Msa1276930 | 0.808243 | 3.408871e-50 | -8.615850e-47 |
| Msa1131560 | Msa1276930 | 0.815713 | 8.027906e-52 | -8.615850e-47 |
| Msa1166010 | Msa1276930 | 0.829323 | 5.489469e-55 | -8.615850e-47 |
| Msa1166860 | Msa1276930 | 0.824072 | 9.838769e-54 | -8.615850e-47 |
| Msa1166870 | Msa1276930 | 0.859187 | 4.917834e-63 | -8.615850e-47 |
| Msa1179950 | Msa1276930 | 0.816004 | 6.913205e-52 | -8.615850e-47 |
| Msa1179980 | Msa1276930 | 0.827443 | 1.560018e-54 | -8.615850e-47 |
| Msa1184370 | Msa1276930 | 0.842998 | 1.836267e-58 | -8.615850e-47 |
| Msa1193950 | Msa1276930 | -0.817492 | 3.205742e-52 | -8.615850e-47 |
| Msa1201830 | Msa1276930 | 0.807536 | 4.818385e-50 | -8.615850e-47 |
| Msa0508590 | Msa1276930 | 0.806405 | 8.356692e-50 | -8.615850e-47 |
| Msa0508630 | Msa1276930 | 0.809237 | 2.089576e-50 | -8.615850e-47 |
| Msa0509950 | Msa1276930 | -0.832002 | 1.212103e-55 | -8.615850e-47 |
| Msa0526540 | Msa1276930 | 0.850288 | 1.871240e-60 | -8.615850e-47 |
| Msa0527150 | Msa1276930 | 0.806938 | 6.449554e-50 | -8.615850e-47 |
| Msa0534750 | Msa1276930 | 0.823721 | 1.189107e-53 | -8.615850e-47 |
| Msa0541860 | Msa1276930 | 0.814087 | 1.841498e-51 | -8.615850e-47 |
| Msa0552810 | Msa1276930 | 0.802009 | 6.874176e-49 | -8.615850e-47 |
| Msa0561430 | Msa1276930 | 0.809560 | 1.781385e-50 | -8.615850e-47 |
| Msa0571920 | Msa1276930 | 0.809617 | 1.731880e-50 | -8.615850e-47 |
| Msa0576940 | Msa1276930 | 0.850183 | 2.001577e-60 | -8.615850e-47 |
| Msa0581070 | Msa1276930 | 0.835904 | 1.278564e-56 | -8.615850e-47 |
| Msa0864010 | Msa1276930 | 0.809581 | 1.763356e-50 | -8.615850e-47 |
| Msa0960830 | Msa1276930 | 0.822481 | 2.315160e-53 | -8.615850e-47 |
| Msa0963020 | Msa1276930 | 0.812060 | 5.126262e-51 | -8.615850e-47 |
| Msa0966270 | Msa1276930 | 0.845400 | 4.157935e-59 | -8.615850e-47 |
| Msa0974810 | Msa1276930 | 0.806459 | 8.144103e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276930 | MtrunA17_Chr8g0344731 | 91.057 | 246 | 6 | 2 | 1 | 246 | 1 | 230 | 7.12e-162 | 447 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276930 | AT1G17350.3 | 65.975 | 241 | 65 | 3 | 1 | 240 | 1 | 225 | 9.78e-116 | 330 |
| Msa1276930 | AT1G17350.5 | 65.975 | 241 | 65 | 3 | 1 | 240 | 1 | 225 | 9.78e-116 | 330 |
| Msa1276930 | AT1G17350.1 | 65.975 | 241 | 65 | 3 | 1 | 240 | 1 | 225 | 9.78e-116 | 330 |
| Msa1276930 | AT1G17350.4 | 65.975 | 241 | 65 | 3 | 1 | 240 | 1 | 225 | 9.78e-116 | 330 |
| Msa1276930 | AT1G17350.2 | 66.234 | 231 | 69 | 3 | 1 | 230 | 1 | 223 | 2.71e-108 | 312 |
| Msa1276930 | AT1G72420.1 | 61.983 | 242 | 74 | 4 | 1 | 240 | 1 | 226 | 4.22e-105 | 304 |
| Msa1276930 | AT1G72420.2 | 61.983 | 242 | 74 | 4 | 1 | 240 | 1 | 226 | 4.22e-105 | 304 |
| Msa1276930 | AT1G72420.4 | 61.333 | 225 | 69 | 4 | 18 | 240 | 7 | 215 | 4.98e-96 | 280 |
| Msa1276930 | AT1G72420.5 | 63.910 | 133 | 47 | 1 | 1 | 132 | 1 | 133 | 1.95e-56 | 179 |
| Msa1276930 | AT1G72420.3 | 63.910 | 133 | 47 | 1 | 1 | 132 | 1 | 133 | 3.31e-56 | 176 |
| Msa1276930 | AT1G72420.6 | 63.910 | 133 | 47 | 1 | 1 | 132 | 1 | 133 | 3.31e-56 | 176 |
Find 80 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTATTTGTGATTCTTAA+AGG | 0.095752 | 8_3:+11915621 | Msa1276930:three_prime_UTR |
| TTGTATTCTGATTCTGAATT+TGG | 0.164131 | 8_3:+11911885 | Msa1276930:CDS |
| TGCAATATACCAGTTATCTT+TGG | 0.216625 | 8_3:-11913272 | None:intergenic |
| ATTGCCAACAACTTGTAATA+AGG | 0.238491 | 8_3:+11915858 | Msa1276930:three_prime_UTR |
| ACGATAGCTATGAAACTTAA+AGG | 0.245721 | 8_3:+11913037 | Msa1276930:CDS |
| CAGATACCTGAATCTGAAAA+TGG | 0.295053 | 8_3:+11912029 | Msa1276930:CDS |
| GTGCACATGCGAGGTGGTTT+TGG | 0.312467 | 8_3:-11915954 | None:intergenic |
| CATCATTATTATTACAAAAC+AGG | 0.316698 | 8_3:-11915598 | None:intergenic |
| TGCAGATATACACGGAGAAT+TGG | 0.328795 | 8_3:+11913194 | Msa1276930:intron |
| TTGATTTCAACAGCTATATC+TGG | 0.331646 | 8_3:+11911783 | Msa1276930:intron |
| CAAAACCTATACTACATCAT+TGG | 0.343817 | 8_3:-11915526 | None:intergenic |
| GCAATATACCAGTTATCTTT+GGG | 0.348274 | 8_3:-11913271 | None:intergenic |
| TTGTGGAATGCGCTCCAAAA+AGG | 0.350095 | 8_3:+11912133 | Msa1276930:CDS |
| TTTACGTGCCCAAAGATAAC+TGG | 0.351126 | 8_3:+11913263 | Msa1276930:CDS |
| CCAAGCAAGAATTATCAAAA+TGG | 0.360136 | 8_3:+11911859 | Msa1276930:CDS |
| AAGAGAGAAGGAAGCATGTT+TGG | 0.363868 | 8_3:-11911609 | None:intergenic |
| ATTTCAGACTTGAACTTGAA+TGG | 0.375010 | 8_3:+11915479 | Msa1276930:CDS |
| CAGGTGATTTGTGGTGGTGT+GGG | 0.375042 | 8_3:+11914888 | Msa1276930:CDS |
| GGTGTCCCAGGTGCTAGATC+TGG | 0.377828 | 8_3:+11915448 | Msa1276930:CDS |
| AAACATGCTTCCTTCTCTCT+TGG | 0.384440 | 8_3:+11911611 | Msa1276930:five_prime_UTR |
| TAGCTTCGAGAAGTCGAAAA+TGG | 0.384475 | 8_3:-11915888 | None:intergenic |
| ATGAATCCATCACGTGTTCT+TGG | 0.389127 | 8_3:+11915397 | Msa1276930:CDS |
| CATTGGGTTCTCACTTCTCA+TGG | 0.392116 | 8_3:-11915509 | None:intergenic |
| TTGCCCTTATTACAAGTTGT+TGG | 0.420192 | 8_3:-11915862 | None:intergenic |
| TCAGGTGATTTGTGGTGGTG+TGG | 0.422977 | 8_3:+11914887 | Msa1276930:CDS |
| TTGCCAACAACTTGTAATAA+GGG | 0.429244 | 8_3:+11915859 | Msa1276930:three_prime_UTR |
| TCTGAAAATGGTAAAACTAC+TGG | 0.430983 | 8_3:+11912041 | Msa1276930:CDS |
| GAGGGTGAGTAAAGTTAAGT+TGG | 0.434291 | 8_3:-11915932 | None:intergenic |
| CTCTGGGAATCTTTCACTTG+AGG | 0.435126 | 8_3:+11912070 | Msa1276930:CDS |
| TTTAAGCTGGATCTGGCCTC+AGG | 0.438196 | 8_3:+11914869 | Msa1276930:CDS |
| TATTCTGATTCTGAATTTGG+AGG | 0.441704 | 8_3:+11911888 | Msa1276930:CDS |
| ATCTGGCCTCAGGTGATTTG+TGG | 0.445665 | 8_3:+11914879 | Msa1276930:CDS |
| GTATGGGTTTAAGCTGGATC+TGG | 0.447946 | 8_3:+11914862 | Msa1276930:intron |
| AAAACCTATACTACATCATT+GGG | 0.453436 | 8_3:-11915525 | None:intergenic |
| AATGCCGAGGGTGGTGTCCC+AGG | 0.459127 | 8_3:+11915436 | Msa1276930:CDS |
| GCAGATATACACGGAGAATT+GGG | 0.459883 | 8_3:+11913195 | Msa1276930:intron |
| GTTTGATGGCTTCATTGACT+TGG | 0.463757 | 8_3:+11913003 | Msa1276930:intron |
| CATGCTTCCTTCTCTCTTGG+CGG | 0.470183 | 8_3:+11911614 | Msa1276930:five_prime_UTR |
| TGGTGTGGGGTGGTGCGGTA+CGG | 0.486508 | 8_3:+11914902 | Msa1276930:CDS |
| CCTGGTCCAGATCTAGCACC+TGG | 0.491978 | 8_3:-11915454 | None:intergenic |
| TCAATGGATGCTACTAAGAA+AGG | 0.500994 | 8_3:+11911701 | Msa1276930:CDS |
| AGAACCCAATGATGTAGTAT+AGG | 0.502929 | 8_3:+11915521 | Msa1276930:exon |
| GCTATGAAACTTAAAGGAGA+TGG | 0.505648 | 8_3:+11913043 | Msa1276930:CDS |
| TAGTAGCATCCATTGATGCT+TGG | 0.514719 | 8_3:-11911694 | None:intergenic |
| TGATTTGTGGTGGTGTGGGG+TGG | 0.523835 | 8_3:+11914892 | Msa1276930:CDS |
| GAGTTGTCCTCCATCTGTCC+AGG | 0.525035 | 8_3:-11913226 | None:intergenic |
| GATCTAGTATGGGTTTAAGC+TGG | 0.525359 | 8_3:+11914856 | Msa1276930:intron |
| TAGCTCGATATGTACCTACT+TGG | 0.540332 | 8_3:+11915344 | Msa1276930:CDS |
| CTTTCACTTGAGGTTACTCA+AGG | 0.540859 | 8_3:+11912080 | Msa1276930:CDS |
| GGTTAACTCACCTGGACAGA+TGG | 0.543070 | 8_3:+11913216 | Msa1276930:CDS |
| AGGTGATTTGTGGTGGTGTG+GGG | 0.543099 | 8_3:+11914889 | Msa1276930:CDS |
| AAGACTGTTCCAAGCATCAA+TGG | 0.543179 | 8_3:+11911685 | Msa1276930:CDS |
| TCTCTCACCGCCAAGAGAGA+AGG | 0.550914 | 8_3:-11911621 | None:intergenic |
| TGTGGTGGTGTGGGGTGGTG+CGG | 0.551250 | 8_3:+11914897 | Msa1276930:CDS |
| AAGTGGAATATTAGTAGAGG+TGG | 0.553563 | 8_3:+11912107 | Msa1276930:CDS |
| GCTAAGTGGAATATTAGTAG+AGG | 0.567692 | 8_3:+11912104 | Msa1276930:CDS |
| TAATGATGTCATTAATCAAG+TGG | 0.568925 | 8_3:+11915803 | Msa1276930:three_prime_UTR |
| GACAGATGGAGGACAACTCA+TGG | 0.575304 | 8_3:+11913230 | Msa1276930:CDS |
| AGCACCTGGGACACCACCCT+CGG | 0.576679 | 8_3:-11915440 | None:intergenic |
| CCAGGTGCTAGATCTGGACC+AGG | 0.581357 | 8_3:+11915454 | Msa1276930:CDS |
| GAGAATTGGGTTAACTCACC+TGG | 0.591802 | 8_3:+11913208 | Msa1276930:CDS |
| AGGTTACTCAAGGTGCTAAG+TGG | 0.593770 | 8_3:+11912090 | Msa1276930:CDS |
| ATCATTATTATTACAAAACA+GGG | 0.599675 | 8_3:-11915597 | None:intergenic |
| CGATATGTACCTACTTGGAG+AGG | 0.604855 | 8_3:+11915349 | Msa1276930:CDS |
| GACATGCCAAGAACACGTGA+TGG | 0.606451 | 8_3:-11915403 | None:intergenic |
| GTAGGTACATATCGAGCTAG+AGG | 0.608047 | 8_3:-11915340 | None:intergenic |
| TGGCCTCAGGTGATTTGTGG+TGG | 0.608727 | 8_3:+11914882 | Msa1276930:CDS |
| ATGTCATTAATCAAGTGGTA+TGG | 0.616154 | 8_3:+11915808 | Msa1276930:three_prime_UTR |
| TCTAAAAGTACACATTCAGA+CGG | 0.626724 | 8_3:-11915999 | None:intergenic |
| ATAACATTCCCTCTCCAAGT+AGG | 0.627204 | 8_3:-11915358 | None:intergenic |
| AGTTCAAGTCTGAAATCACC+TGG | 0.640637 | 8_3:-11915472 | None:intergenic |
| TAACTCACCTGGACAGATGG+AGG | 0.644910 | 8_3:+11913219 | Msa1276930:CDS |
| GTGGTATGGTGTAACAATGG+TGG | 0.645793 | 8_3:+11915822 | Msa1276930:three_prime_UTR |
| TAATAGCTTTCATATTCACA+TGG | 0.647136 | 8_3:+11915680 | Msa1276930:three_prime_UTR |
| GATATGTACCTACTTGGAGA+GGG | 0.650673 | 8_3:+11915350 | Msa1276930:CDS |
| ATGGTGTAACAATGGTGGAA+AGG | 0.668201 | 8_3:+11915827 | Msa1276930:three_prime_UTR |
| ACACCACCACAAATCACCTG+AGG | 0.680040 | 8_3:-11914885 | None:intergenic |
| CAAGTGGTATGGTGTAACAA+TGG | 0.686669 | 8_3:+11915819 | Msa1276930:three_prime_UTR |
| GATTATGGTGCAGATATACA+CGG | 0.690928 | 8_3:+11913186 | Msa1276930:intron |
| CTGGTCCAGATCTAGCACCT+GGG | 0.695025 | 8_3:-11915453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTGATATAGAAAT+AGG | - | chr8_3:11912337-11912356 | None:intergenic | 10.0% |
| !! | AATATTATCAATTTAATGAA+TGG | + | chr8_3:11914161-11914180 | Msa1276930:intron | 10.0% |
| !!! | AAGTTGAATATATATTTTTC+AGG | - | chr8_3:11911834-11911853 | None:intergenic | 15.0% |
| !! | CAATGTTAATATATTATTGA+TGG | - | chr8_3:11912290-11912309 | None:intergenic | 15.0% |
| !! | TTTAAATAATCAATTCAAAC+AGG | + | chr8_3:11912511-11912530 | Msa1276930:intron | 15.0% |
| !!! | CAGAAAAAATATAGAATTTT+TGG | + | chr8_3:11913518-11913537 | Msa1276930:intron | 15.0% |
| !!! | TTAAAAAACACTAACATTTT+AGG | - | chr8_3:11914326-11914345 | None:intergenic | 15.0% |
| !!! | TTTGATTTTGAAGAAAAAAA+AGG | + | chr8_3:11915033-11915052 | Msa1276930:intron | 15.0% |
| !!! | TTGATTTTGAAGAAAAAAAA+GGG | + | chr8_3:11915034-11915053 | Msa1276930:intron | 15.0% |
| !! | ATCATTATTATTACAAAACA+GGG | - | chr8_3:11915600-11915619 | None:intergenic | 15.0% |
| !! | TTTAGACAAAAATATCATTT+CGG | + | chr8_3:11916016-11916035 | Msa1276930:three_prime_UTR | 15.0% |
| !!! | TTGAATATATATTTTTCAGG+TGG | - | chr8_3:11911831-11911850 | None:intergenic | 20.0% |
| !!! | ACTTTGGTTAATTTAATTTC+TGG | + | chr8_3:11911941-11911960 | Msa1276930:intron | 20.0% |
| !!! | CTTTGGTTAATTTAATTTCT+GGG | + | chr8_3:11911942-11911961 | Msa1276930:intron | 20.0% |
| !!! | ATTTGGCATTTTAAAAGAAA+AGG | - | chr8_3:11913096-11913115 | None:intergenic | 20.0% |
| !!! | TTTTTATAATAAGTCACGTT+TGG | - | chr8_3:11913587-11913606 | None:intergenic | 20.0% |
| !!! | ATTTTGCATTCAGATAAAAA+AGG | - | chr8_3:11913697-11913716 | None:intergenic | 20.0% |
| !! | ACCAAATAATTTAAACTTTG+GGG | - | chr8_3:11914205-11914224 | None:intergenic | 20.0% |
| !! | CACCAAATAATTTAAACTTT+GGG | - | chr8_3:11914206-11914225 | None:intergenic | 20.0% |
| !! | TCACCAAATAATTTAAACTT+TGG | - | chr8_3:11914207-11914226 | None:intergenic | 20.0% |
| !!! | TTAAATTATTTGGTGAAATC+AGG | + | chr8_3:11914211-11914230 | Msa1276930:intron | 20.0% |
| !! | ATAACAAGTACAAAATCAAT+GGG | - | chr8_3:11914722-11914741 | None:intergenic | 20.0% |
| !! | TATAACAAGTACAAAATCAA+TGG | - | chr8_3:11914723-11914742 | None:intergenic | 20.0% |
| !!! | TATTTTTGTCTATTTTGTTC+TGG | + | chr8_3:11914815-11914834 | Msa1276930:intron | 20.0% |
| !!! | TGATTTTGAAGAAAAAAAAG+GGG | + | chr8_3:11915035-11915054 | Msa1276930:intron | 20.0% |
| !! | CATCATTATTATTACAAAAC+AGG | - | chr8_3:11915601-11915620 | None:intergenic | 20.0% |
| !! | TTCTTAAAGGAAAAATATGT+TGG | + | chr8_3:11915634-11915653 | Msa1276930:three_prime_UTR | 20.0% |
| !!! | AATATATATTTTTCAGGTGG+TGG | - | chr8_3:11911828-11911847 | None:intergenic | 25.0% |
| ! | TTGTATTCTGATTCTGAATT+TGG | + | chr8_3:11911885-11911904 | Msa1276930:CDS | 25.0% |
| ! | TCAAATTGTTAATGTTGTTC+AGG | + | chr8_3:11911987-11912006 | Msa1276930:intron | 25.0% |
| ! | ATTACTAGTGTTGTCAAATA+TGG | + | chr8_3:11912238-11912257 | Msa1276930:intron | 25.0% |
| ! | GAAAACAACTTATAGCTTAT+AGG | - | chr8_3:11912379-11912398 | None:intergenic | 25.0% |
| !! | ATAGCATTGAATTGTATGAA+TGG | + | chr8_3:11912576-11912595 | Msa1276930:intron | 25.0% |
| !! | GACTTATTAGCTTATCTAAT+GGG | - | chr8_3:11912845-11912864 | None:intergenic | 25.0% |
| !! | TGACTTATTAGCTTATCTAA+TGG | - | chr8_3:11912846-11912865 | None:intergenic | 25.0% |
| ! | AGCTAATAAGTCAATTCAAA+CGG | + | chr8_3:11912853-11912872 | Msa1276930:intron | 25.0% |
| ! | AATTCAATTCAATATGCACT+AGG | - | chr8_3:11912906-11912925 | None:intergenic | 25.0% |
| ! | ATTGAATTGAATTGTCTGAT+TGG | + | chr8_3:11912913-11912932 | Msa1276930:intron | 25.0% |
| ! | AAATTTCCTAGGATATCATT+TGG | - | chr8_3:11913113-11913132 | None:intergenic | 25.0% |
| ! | TATTGTAACTAGTTGGATTA+TGG | + | chr8_3:11913171-11913190 | Msa1276930:intron | 25.0% |
| ! | CATATCAATCATTACTAATC+AGG | - | chr8_3:11913332-11913351 | None:intergenic | 25.0% |
| ! | TATCAAAATCTGCTATGTTA+TGG | - | chr8_3:11913403-11913422 | None:intergenic | 25.0% |
| !! | ATTTTCCTAATAGAGAAACT+AGG | - | chr8_3:11913453-11913472 | None:intergenic | 25.0% |
| ! | TTTCTCTATTAGGAAAATAG+CGG | + | chr8_3:11913455-11913474 | Msa1276930:intron | 25.0% |
| ! | ATTCAGATAAAAAAGGAAAC+GGG | - | chr8_3:11913690-11913709 | None:intergenic | 25.0% |
| ! | CATTCAGATAAAAAAGGAAA+CGG | - | chr8_3:11913691-11913710 | None:intergenic | 25.0% |
| ! | TCTATTTAACAATGAAGTTC+TGG | + | chr8_3:11913787-11913806 | Msa1276930:intron | 25.0% |
| !! | ATGATAACCTGTAATTTTGT+AGG | + | chr8_3:11913855-11913874 | Msa1276930:intron | 25.0% |
| ! | TAATGAGATAGTATACTTTG+TGG | - | chr8_3:11913946-11913965 | None:intergenic | 25.0% |
| ! | TCCCCAAAGTTTAAATTATT+TGG | + | chr8_3:11914201-11914220 | Msa1276930:intron | 25.0% |
| !! | TATGATTCATTTGTTGCATT+TGG | - | chr8_3:11914354-11914373 | None:intergenic | 25.0% |
| ! | AATGCAACAAATGAATCATA+AGG | + | chr8_3:11914354-11914373 | Msa1276930:intron | 25.0% |
| ! | CTTTACAAACAAGTTCAAAT+TGG | - | chr8_3:11914446-11914465 | None:intergenic | 25.0% |
| !! | CAATTTGAACTTGTTTGTAA+AGG | + | chr8_3:11914444-11914463 | Msa1276930:intron | 25.0% |
| ! | TAAGCTAAATTTAGCTACAA+CGG | + | chr8_3:11914635-11914654 | Msa1276930:intron | 25.0% |
| ! | TTATCTATTGAGTAAACACT+TGG | + | chr8_3:11915004-11915023 | Msa1276930:intron | 25.0% |
| ! | TATCTATTGAGTAAACACTT+GGG | + | chr8_3:11915005-11915024 | Msa1276930:intron | 25.0% |
| ! | CTAAAAGAATAATTGTTGCT+TGG | + | chr8_3:11915152-11915171 | Msa1276930:intron | 25.0% |
| ! | TTCTATGTATATGTAAGTGA+AGG | + | chr8_3:11915193-11915212 | Msa1276930:intron | 25.0% |
| ! | TCTATGTATATGTAAGTGAA+GGG | + | chr8_3:11915194-11915213 | Msa1276930:intron | 25.0% |
| ! | AAAACCTATACTACATCATT+GGG | - | chr8_3:11915528-11915547 | None:intergenic | 25.0% |
| ! | CATCTATTTGTGATTCTTAA+AGG | + | chr8_3:11915621-11915640 | Msa1276930:three_prime_UTR | 25.0% |
| ! | TAATAGCTTTCATATTCACA+TGG | + | chr8_3:11915680-11915699 | Msa1276930:three_prime_UTR | 25.0% |
| ! | TAATGATGTCATTAATCAAG+TGG | + | chr8_3:11915803-11915822 | Msa1276930:three_prime_UTR | 25.0% |
| !!! | TTCAAAAGTGTATTTTCGAA+CGG | - | chr8_3:11916044-11916063 | None:intergenic | 25.0% |
| TTGATTTCAACAGCTATATC+TGG | + | chr8_3:11911783-11911802 | Msa1276930:intron | 30.0% | |
| !! | CCATTTTGATAATTCTTGCT+TGG | - | chr8_3:11911862-11911881 | None:intergenic | 30.0% |
| CCAAGCAAGAATTATCAAAA+TGG | + | chr8_3:11911859-11911878 | Msa1276930:CDS | 30.0% | |
| TATTCTGATTCTGAATTTGG+AGG | + | chr8_3:11911888-11911907 | Msa1276930:CDS | 30.0% | |
| ! | GTTGCTAAAGTTTGAAACTT+TGG | + | chr8_3:11911925-11911944 | Msa1276930:intron | 30.0% |
| ! | GTTTTACCATTTTCAGATTC+AGG | - | chr8_3:11912038-11912057 | None:intergenic | 30.0% |
| TCTGAAAATGGTAAAACTAC+TGG | + | chr8_3:11912041-11912060 | Msa1276930:CDS | 30.0% | |
| ! | AAAACTACTGGAATTTTCTC+TGG | + | chr8_3:11912053-11912072 | Msa1276930:CDS | 30.0% |
| ! | AAACTACTGGAATTTTCTCT+GGG | + | chr8_3:11912054-11912073 | Msa1276930:CDS | 30.0% |
| ! | AGTTAAAAAAGCCACCTTTT+TGG | - | chr8_3:11912150-11912169 | None:intergenic | 30.0% |
| ! | TCAAAGACTTTAGTGTTGTT+TGG | + | chr8_3:11912169-11912188 | Msa1276930:intron | 30.0% |
| TTCAGTGATTATAGTGTAAG+CGG | + | chr8_3:11912648-11912667 | Msa1276930:intron | 30.0% | |
| TTAGCTTATCTAATGGGATA+AGG | - | chr8_3:11912839-11912858 | None:intergenic | 30.0% | |
| !! | TTCTCATTTTTGTTCAACGA+CGG | + | chr8_3:11912943-11912962 | Msa1276930:intron | 30.0% |
| !! | TCTGTGTTTTTGTAGTTTGA+TGG | + | chr8_3:11912989-11913008 | Msa1276930:intron | 30.0% |
| ACGATAGCTATGAAACTTAA+AGG | + | chr8_3:11913037-11913056 | Msa1276930:CDS | 30.0% | |
| TTAAAAGAAAAGGACACTCA+CGG | - | chr8_3:11913086-11913105 | None:intergenic | 30.0% | |
| AAAATGCCAAATGATATCCT+AGG | + | chr8_3:11913104-11913123 | Msa1276930:intron | 30.0% | |
| TGATATCCTAGGAAATTTAG+AGG | + | chr8_3:11913115-11913134 | Msa1276930:intron | 30.0% | |
| GATATCCTAGGAAATTTAGA+GGG | + | chr8_3:11913116-11913135 | Msa1276930:intron | 30.0% | |
| ! | TTGCAAGTATTGTAACTAGT+TGG | + | chr8_3:11913164-11913183 | Msa1276930:intron | 30.0% |
| GCAATATACCAGTTATCTTT+GGG | - | chr8_3:11913274-11913293 | None:intergenic | 30.0% | |
| TGCAATATACCAGTTATCTT+TGG | - | chr8_3:11913275-11913294 | None:intergenic | 30.0% | |
| AGATAACTGGTATATTGCAA+AGG | + | chr8_3:11913276-11913295 | Msa1276930:intron | 30.0% | |
| AATGATTGATATGTTCGACT+AGG | + | chr8_3:11913339-11913358 | Msa1276930:intron | 30.0% | |
| ACTATCCTAGTTTCTCTATT+AGG | + | chr8_3:11913445-11913464 | Msa1276930:intron | 30.0% | |
| TTCTCTATTAGGAAAATAGC+GGG | + | chr8_3:11913456-11913475 | Msa1276930:intron | 30.0% | |
| AGCGAAGCTTACATATTAAA+AGG | - | chr8_3:11913662-11913681 | None:intergenic | 30.0% | |
| TTCAGATAAAAAAGGAAACG+GGG | - | chr8_3:11913689-11913708 | None:intergenic | 30.0% | |
| AGTCAACTATACACAAGAAA+AGG | - | chr8_3:11913721-11913740 | None:intergenic | 30.0% | |
| TGACTTATTTCAATGACATG+CGG | + | chr8_3:11913736-11913755 | Msa1276930:intron | 30.0% | |
| AATACGTCCTACAAAATTAC+AGG | - | chr8_3:11913865-11913884 | None:intergenic | 30.0% | |
| ! | CTACGTTTTGCAATTTAATC+AGG | - | chr8_3:11913975-11913994 | None:intergenic | 30.0% |
| TTGAGATTAAGGACTAGATA+AGG | + | chr8_3:11914016-11914035 | Msa1276930:intron | 30.0% | |
| ACTTCGATTATGCAAATTTC+TGG | + | chr8_3:11914138-11914157 | Msa1276930:intron | 30.0% | |
| AAACTAGAATCAAGAGTTTG+AGG | + | chr8_3:11914260-11914279 | Msa1276930:intron | 30.0% | |
| ! | CTAACATTTTAGGCATGTAA+AGG | - | chr8_3:11914316-11914335 | None:intergenic | 30.0% |
| ! | TTTGAACTTGTTTGTAAAGG+AGG | + | chr8_3:11914447-11914466 | Msa1276930:intron | 30.0% |
| TTGTTTGTAAAGGAGGTTAA+CGG | + | chr8_3:11914454-11914473 | Msa1276930:intron | 30.0% | |
| AAGTTTGCAATGAAACCAAA+AGG | + | chr8_3:11914563-11914582 | Msa1276930:intron | 30.0% | |
| ! | AAATTTAGCTTAGTAGAGCT+AGG | - | chr8_3:11914627-11914646 | None:intergenic | 30.0% |
| AAGCTAAATTTAGCTACAAC+GGG | + | chr8_3:11914636-11914655 | Msa1276930:intron | 30.0% | |
| TCAATATTACTAAAGAGCGA+CGG | - | chr8_3:11914681-11914700 | None:intergenic | 30.0% | |
| ATCTATTGAGTAAACACTTG+GGG | + | chr8_3:11915006-11915025 | Msa1276930:intron | 30.0% | |
| !! | AGAAAAAAAAGGGGTTTTGA+TGG | + | chr8_3:11915044-11915063 | Msa1276930:intron | 30.0% |
| TGGTCAGGAAATACTATAAA+CGG | + | chr8_3:11915064-11915083 | Msa1276930:intron | 30.0% | |
| AGGAAATACTATAAACGGAT+AGG | + | chr8_3:11915069-11915088 | Msa1276930:intron | 30.0% | |
| ATATACATAGAAAGCCAACA+AGG | - | chr8_3:11915185-11915204 | None:intergenic | 30.0% | |
| ATTTCAGACTTGAACTTGAA+TGG | + | chr8_3:11915479-11915498 | Msa1276930:CDS | 30.0% | |
| CAAAACCTATACTACATCAT+TGG | - | chr8_3:11915529-11915548 | None:intergenic | 30.0% | |
| ! | AGTCAAGATTTTGCTCTTTT+AGG | + | chr8_3:11915560-11915579 | Msa1276930:three_prime_UTR | 30.0% |
| ! | GTCAAGATTTTGCTCTTTTA+GGG | + | chr8_3:11915561-11915580 | Msa1276930:three_prime_UTR | 30.0% |
| ATGTCATTAATCAAGTGGTA+TGG | + | chr8_3:11915808-11915827 | Msa1276930:three_prime_UTR | 30.0% | |
| ATTGCCAACAACTTGTAATA+AGG | + | chr8_3:11915858-11915877 | Msa1276930:three_prime_UTR | 30.0% | |
| TTGCCAACAACTTGTAATAA+GGG | + | chr8_3:11915859-11915878 | Msa1276930:three_prime_UTR | 30.0% | |
| ! | TCTAAAAGTACACATTCAGA+CGG | - | chr8_3:11916002-11916021 | None:intergenic | 30.0% |
| TCAATGGATGCTACTAAGAA+AGG | + | chr8_3:11911701-11911720 | Msa1276930:CDS | 35.0% | |
| CAGATACCTGAATCTGAAAA+TGG | + | chr8_3:11912029-11912048 | Msa1276930:CDS | 35.0% | |
| GCTAAGTGGAATATTAGTAG+AGG | + | chr8_3:11912104-11912123 | Msa1276930:CDS | 35.0% | |
| AAGTGGAATATTAGTAGAGG+TGG | + | chr8_3:11912107-11912126 | Msa1276930:CDS | 35.0% | |
| !! | ATTAGTAGAGGTGGATTTTG+TGG | + | chr8_3:11912116-11912135 | Msa1276930:CDS | 35.0% |
| AAGCTATCTTGTAGAGCTTA+TGG | + | chr8_3:11912401-11912420 | Msa1276930:intron | 35.0% | |
| ! | CTCACAAGTTTTTATGCTAG+TGG | + | chr8_3:11912483-11912502 | Msa1276930:intron | 35.0% |
| TGTTGTCGAACTTGAACAAA+GGG | - | chr8_3:11912537-11912556 | None:intergenic | 35.0% | |
| TTGTTGTCGAACTTGAACAA+AGG | - | chr8_3:11912538-11912557 | None:intergenic | 35.0% | |
| AAGTTCGACAACAACATAGA+TGG | + | chr8_3:11912544-11912563 | Msa1276930:intron | 35.0% | |
| ! | CTCAATGATTTTGCAGTGTT+TGG | + | chr8_3:11912614-11912633 | Msa1276930:intron | 35.0% |
| CAAAAACACAGAATTGCGTA+AGG | - | chr8_3:11912981-11913000 | None:intergenic | 35.0% | |
| GCTATGAAACTTAAAGGAGA+TGG | + | chr8_3:11913043-11913062 | Msa1276930:CDS | 35.0% | |
| TCAAACCCTCTAAATTTCCT+AGG | - | chr8_3:11913124-11913143 | None:intergenic | 35.0% | |
| ! | GGGTTTGAAGTTTCATTTCA+TGG | + | chr8_3:11913136-11913155 | Msa1276930:intron | 35.0% |
| GATTATGGTGCAGATATACA+CGG | + | chr8_3:11913186-11913205 | Msa1276930:intron | 35.0% | |
| GTAAGCAGTAAGATGGAAAT+GGG | - | chr8_3:11913307-11913326 | None:intergenic | 35.0% | |
| TGTAAGCAGTAAGATGGAAA+TGG | - | chr8_3:11913308-11913327 | None:intergenic | 35.0% | |
| !! | TAGTGTTGAGGTTTTTGTTG+CGG | - | chr8_3:11913429-11913448 | None:intergenic | 35.0% |
| TCAGATAAAAAAGGAAACGG+GGG | - | chr8_3:11913688-11913707 | None:intergenic | 35.0% | |
| TAAATAGAAGATAGCACTGC+AGG | - | chr8_3:11913775-11913794 | None:intergenic | 35.0% | |
| ACTATTGTAAAACCTTGCAG+TGG | - | chr8_3:11914083-11914102 | None:intergenic | 35.0% | |
| ! | ATTTAAACTTTGGGGAGAGT+TGG | - | chr8_3:11914197-11914216 | None:intergenic | 35.0% |
| TAAAGGACCAACTAAATTGC+AGG | - | chr8_3:11914299-11914318 | None:intergenic | 35.0% | |
| ! | TCTGTGACATTGTTTGAGTT+GGG | - | chr8_3:11914514-11914533 | None:intergenic | 35.0% |
| ! | ATGGGTTTCTTCATGTTTTC+TGG | - | chr8_3:11914537-11914556 | None:intergenic | 35.0% |
| TATTGTGGTCTGATCTAGTA+TGG | + | chr8_3:11914845-11914864 | Msa1276930:intron | 35.0% | |
| ATTGTGGTCTGATCTAGTAT+GGG | + | chr8_3:11914846-11914865 | Msa1276930:intron | 35.0% | |
| TGTATATGTAAGTGAAGGGA+TGG | + | chr8_3:11915198-11915217 | Msa1276930:intron | 35.0% | |
| GTATATGTAAGTGAAGGGAT+GGG | + | chr8_3:11915199-11915218 | Msa1276930:intron | 35.0% | |
| CATCACTTCAGTGCTTAATA+TGG | - | chr8_3:11915235-11915254 | None:intergenic | 35.0% | |
| AGAACCCAATGATGTAGTAT+AGG | + | chr8_3:11915521-11915540 | Msa1276930:exon | 35.0% | |
| TTGCCCTTATTACAAGTTGT+TGG | - | chr8_3:11915865-11915884 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTGTGCACATGCG+AGG | - | chr8_3:11915966-11915985 | None:intergenic | 35.0% |
| ! | AAGAGAGAAGGAAGCATGTT+TGG | - | chr8_3:11911612-11911631 | None:intergenic | 40.0% |
| AAACATGCTTCCTTCTCTCT+TGG | + | chr8_3:11911611-11911630 | Msa1276930:five_prime_UTR | 40.0% | |
| AAGACTGTTCCAAGCATCAA+TGG | + | chr8_3:11911685-11911704 | Msa1276930:CDS | 40.0% | |
| TAGTAGCATCCATTGATGCT+TGG | - | chr8_3:11911697-11911716 | None:intergenic | 40.0% | |
| CTTTCACTTGAGGTTACTCA+AGG | + | chr8_3:11912080-11912099 | Msa1276930:CDS | 40.0% | |
| AGAAAGCCAAAAATCCGTCA+GGG | - | chr8_3:11912266-11912285 | None:intergenic | 40.0% | |
| AAGGAGATGTGAGACTCTAT+GGG | - | chr8_3:11912820-11912839 | None:intergenic | 40.0% | |
| TAAGGAGATGTGAGACTCTA+TGG | - | chr8_3:11912821-11912840 | None:intergenic | 40.0% | |
| ! | GTTTGATGGCTTCATTGACT+TGG | + | chr8_3:11913003-11913022 | Msa1276930:intron | 40.0% |
| TGCAGATATACACGGAGAAT+TGG | + | chr8_3:11913194-11913213 | Msa1276930:intron | 40.0% | |
| GCAGATATACACGGAGAATT+GGG | + | chr8_3:11913195-11913214 | Msa1276930:intron | 40.0% | |
| TTTACGTGCCCAAAGATAAC+TGG | + | chr8_3:11913263-11913282 | Msa1276930:CDS | 40.0% | |
| ! | TCAGGTTGTAAGCAGTAAGA+TGG | - | chr8_3:11913314-11913333 | None:intergenic | 40.0% |
| GAGAAACTAGGATAGTGTTG+AGG | - | chr8_3:11913441-11913460 | None:intergenic | 40.0% | |
| GCAAAACGTAGTTACCTTGA+CGG | + | chr8_3:11913984-11914003 | Msa1276930:intron | 40.0% | |
| CAAAACGTAGTTACCTTGAC+GGG | + | chr8_3:11913985-11914004 | Msa1276930:intron | 40.0% | |
| !! | GGGCTTGAACTTTGAGATTA+AGG | + | chr8_3:11914005-11914024 | Msa1276930:intron | 40.0% |
| ! | GTAATTTTCCATCCACTGCA+AGG | + | chr8_3:11914068-11914087 | Msa1276930:intron | 40.0% |
| TTGTAAAACCTTGCAGTGGA+TGG | - | chr8_3:11914079-11914098 | None:intergenic | 40.0% | |
| GAAATCAGGTTAACTCGCTT+AGG | + | chr8_3:11914225-11914244 | Msa1276930:intron | 40.0% | |
| GAACAAGCCTGCAATTTAGT+TGG | + | chr8_3:11914289-11914308 | Msa1276930:intron | 40.0% | |
| !! | TTGTTTGAGTTGGGACTATG+AGG | - | chr8_3:11914505-11914524 | None:intergenic | 40.0% |
| GTCTGTGACATTGTTTGAGT+TGG | - | chr8_3:11914515-11914534 | None:intergenic | 40.0% | |
| CATTGCAAACTTGCAACGAT+GGG | - | chr8_3:11914555-11914574 | None:intergenic | 40.0% | |
| TCATTGCAAACTTGCAACGA+TGG | - | chr8_3:11914556-11914575 | None:intergenic | 40.0% | |
| AGAGCTAGGTTTCAACTCAT+CGG | - | chr8_3:11914613-11914632 | None:intergenic | 40.0% | |
| CTAAATTTAGCTACAACGGG+AGG | + | chr8_3:11914639-11914658 | Msa1276930:intron | 40.0% | |
| TGTTCTGGTCTGTTCTATTG+TGG | + | chr8_3:11914830-11914849 | Msa1276930:intron | 40.0% | |
| GATCTAGTATGGGTTTAAGC+TGG | + | chr8_3:11914856-11914875 | Msa1276930:intron | 40.0% | |
| !! | AAAAAGGGGTTTTGATGGTC+AGG | + | chr8_3:11915049-11915068 | Msa1276930:intron | 40.0% |
| TAGCTCGATATGTACCTACT+TGG | + | chr8_3:11915344-11915363 | Msa1276930:CDS | 40.0% | |
| GATATGTACCTACTTGGAGA+GGG | + | chr8_3:11915350-11915369 | Msa1276930:CDS | 40.0% | |
| ATAACATTCCCTCTCCAAGT+AGG | - | chr8_3:11915361-11915380 | None:intergenic | 40.0% | |
| ATGAATCCATCACGTGTTCT+TGG | + | chr8_3:11915397-11915416 | Msa1276930:CDS | 40.0% | |
| ! | TCTTTTTCTGTCAATGCCGA+GGG | + | chr8_3:11915424-11915443 | Msa1276930:CDS | 40.0% |
| ! | AGTTCAAGTCTGAAATCACC+TGG | - | chr8_3:11915475-11915494 | None:intergenic | 40.0% |
| CAAGTGGTATGGTGTAACAA+TGG | + | chr8_3:11915819-11915838 | Msa1276930:three_prime_UTR | 40.0% | |
| ! | ATGGTGTAACAATGGTGGAA+AGG | + | chr8_3:11915827-11915846 | Msa1276930:three_prime_UTR | 40.0% |
| TAGCTTCGAGAAGTCGAAAA+TGG | - | chr8_3:11915891-11915910 | None:intergenic | 40.0% | |
| ! | ATTTTCGACTTCTCGAAGCT+AGG | + | chr8_3:11915890-11915909 | Msa1276930:three_prime_UTR | 40.0% |
| GAGGGTGAGTAAAGTTAAGT+TGG | - | chr8_3:11915935-11915954 | None:intergenic | 40.0% | |
| ! | CTCTGGGAATCTTTCACTTG+AGG | + | chr8_3:11912070-11912089 | Msa1276930:CDS | 45.0% |
| ! | AGGTTACTCAAGGTGCTAAG+TGG | + | chr8_3:11912090-11912109 | Msa1276930:CDS | 45.0% |
| TTGTGGAATGCGCTCCAAAA+AGG | + | chr8_3:11912133-11912152 | Msa1276930:CDS | 45.0% | |
| CAGAAAGCCAAAAATCCGTC+AGG | - | chr8_3:11912267-11912286 | None:intergenic | 45.0% | |
| AGGAGATGTGAGACTCTATG+GGG | - | chr8_3:11912819-11912838 | None:intergenic | 45.0% | |
| GAGAATTGGGTTAACTCACC+TGG | + | chr8_3:11913208-11913227 | Msa1276930:CDS | 45.0% | |
| !!! | CATTCATCTGGTTGGCCTTT+TGG | - | chr8_3:11914581-11914600 | None:intergenic | 45.0% |
| GTTGGGTTCATTCATCTGGT+TGG | - | chr8_3:11914589-11914608 | None:intergenic | 45.0% | |
| GGTTTCAACTCATCGGAGTT+GGG | - | chr8_3:11914606-11914625 | None:intergenic | 45.0% | |
| AGGTTTCAACTCATCGGAGT+TGG | - | chr8_3:11914607-11914626 | None:intergenic | 45.0% | |
| GTATGGGTTTAAGCTGGATC+TGG | + | chr8_3:11914862-11914881 | Msa1276930:intron | 45.0% | |
| !!! | TGCTTGGTTTTGTGCCTTGT+TGG | + | chr8_3:11915168-11915187 | Msa1276930:intron | 45.0% |
| AGTGAAGGGATGGGTATCAT+TGG | + | chr8_3:11915208-11915227 | Msa1276930:intron | 45.0% | |
| CATATCGAGCTAGAGGAATC+TGG | - | chr8_3:11915336-11915355 | None:intergenic | 45.0% | |
| GTAGGTACATATCGAGCTAG+AGG | - | chr8_3:11915343-11915362 | None:intergenic | 45.0% | |
| CGATATGTACCTACTTGGAG+AGG | + | chr8_3:11915349-11915368 | Msa1276930:CDS | 45.0% | |
| ! | GTCTTTTTCTGTCAATGCCG+AGG | + | chr8_3:11915423-11915442 | Msa1276930:CDS | 45.0% |
| CATTGGGTTCTCACTTCTCA+TGG | - | chr8_3:11915512-11915531 | None:intergenic | 45.0% | |
| GTGGTATGGTGTAACAATGG+TGG | + | chr8_3:11915822-11915841 | Msa1276930:three_prime_UTR | 45.0% | |
| !!! | TTTTTTGTGCACATGCGAGG+TGG | - | chr8_3:11915963-11915982 | None:intergenic | 45.0% |
| CATGCTTCCTTCTCTCTTGG+CGG | + | chr8_3:11911614-11911633 | Msa1276930:five_prime_UTR | 50.0% | |
| TGGAATGCGCTCCAAAAAGG+TGG | + | chr8_3:11912136-11912155 | Msa1276930:intron | 50.0% | |
| TGTCAAATATGGCGCCCTGA+CGG | + | chr8_3:11912249-11912268 | Msa1276930:intron | 50.0% | |
| GGAGATGTGAGACTCTATGG+GGG | - | chr8_3:11912818-11912837 | None:intergenic | 50.0% | |
| GGTTAACTCACCTGGACAGA+TGG | + | chr8_3:11913216-11913235 | Msa1276930:CDS | 50.0% | |
| TAACTCACCTGGACAGATGG+AGG | + | chr8_3:11913219-11913238 | Msa1276930:CDS | 50.0% | |
| GACAGATGGAGGACAACTCA+TGG | + | chr8_3:11913230-11913249 | Msa1276930:CDS | 50.0% | |
| CTCAAAGTTCAAGCCCGTCA+AGG | - | chr8_3:11914001-11914020 | None:intergenic | 50.0% | |
| CGGAGTTGGGTTCATTCATC+TGG | - | chr8_3:11914593-11914612 | None:intergenic | 50.0% | |
| ACTAAAGAGCGACGGATGAC+TGG | - | chr8_3:11914673-11914692 | None:intergenic | 50.0% | |
| TTTAAGCTGGATCTGGCCTC+AGG | + | chr8_3:11914869-11914888 | Msa1276930:CDS | 50.0% | |
| ATCTGGCCTCAGGTGATTTG+TGG | + | chr8_3:11914879-11914898 | Msa1276930:CDS | 50.0% | |
| ACACCACCACAAATCACCTG+AGG | - | chr8_3:11914888-11914907 | None:intergenic | 50.0% | |
| ! | TCAGGTGATTTGTGGTGGTG+TGG | + | chr8_3:11914887-11914906 | Msa1276930:CDS | 50.0% |
| ! | CAGGTGATTTGTGGTGGTGT+GGG | + | chr8_3:11914888-11914907 | Msa1276930:CDS | 50.0% |
| ! | AGGTGATTTGTGGTGGTGTG+GGG | + | chr8_3:11914889-11914908 | Msa1276930:CDS | 50.0% |
| GACATGCCAAGAACACGTGA+TGG | - | chr8_3:11915406-11915425 | None:intergenic | 50.0% | |
| ! | TTTTCTGTCAATGCCGAGGG+TGG | + | chr8_3:11915427-11915446 | Msa1276930:CDS | 50.0% |
| !!! | ACATGCGAGGTGGTTTTGGA+GGG | - | chr8_3:11915953-11915972 | None:intergenic | 50.0% |
| TCTCTCACCGCCAAGAGAGA+AGG | - | chr8_3:11911624-11911643 | None:intergenic | 55.0% | |
| !!! | ATGGCGCCCTGACGGATTTT+TGG | + | chr8_3:11912257-11912276 | Msa1276930:intron | 55.0% |
| GAGTTGTCCTCCATCTGTCC+AGG | - | chr8_3:11913229-11913248 | None:intergenic | 55.0% | |
| CCATTGCAACTGCGTCAGCT+AGG | - | chr8_3:11913498-11913517 | None:intergenic | 55.0% | |
| CCTAGCTGACGCAGTTGCAA+TGG | + | chr8_3:11913495-11913514 | Msa1276930:intron | 55.0% | |
| ! | TGGCCTCAGGTGATTTGTGG+TGG | + | chr8_3:11914882-11914901 | Msa1276930:CDS | 55.0% |
| ! | TGATTTGTGGTGGTGTGGGG+TGG | + | chr8_3:11914892-11914911 | Msa1276930:CDS | 55.0% |
| CTGGTCCAGATCTAGCACCT+GGG | - | chr8_3:11915456-11915475 | None:intergenic | 55.0% | |
| !!! | CACATGCGAGGTGGTTTTGG+AGG | - | chr8_3:11915954-11915973 | None:intergenic | 55.0% |
| ! | GTGCACATGCGAGGTGGTTT+TGG | - | chr8_3:11915957-11915976 | None:intergenic | 55.0% |
| CTGCGTCAGCTAGGAGAGAC+TGG | - | chr8_3:11913489-11913508 | None:intergenic | 60.0% | |
| GAGCGACGGATGACTGGACT+GGG | - | chr8_3:11914667-11914686 | None:intergenic | 60.0% | |
| AGAGCGACGGATGACTGGAC+TGG | - | chr8_3:11914668-11914687 | None:intergenic | 60.0% | |
| GGTGTCCCAGGTGCTAGATC+TGG | + | chr8_3:11915448-11915467 | Msa1276930:CDS | 60.0% | |
| CCTGGTCCAGATCTAGCACC+TGG | - | chr8_3:11915457-11915476 | None:intergenic | 60.0% | |
| CCAGGTGCTAGATCTGGACC+AGG | + | chr8_3:11915454-11915473 | Msa1276930:CDS | 60.0% | |
| ! | TGTGGTGGTGTGGGGTGGTG+CGG | + | chr8_3:11914897-11914916 | Msa1276930:CDS | 65.0% |
| TGGTGTGGGGTGGTGCGGTA+CGG | + | chr8_3:11914902-11914921 | Msa1276930:CDS | 65.0% | |
| AATGCCGAGGGTGGTGTCCC+AGG | + | chr8_3:11915436-11915455 | Msa1276930:CDS | 65.0% | |
| AGCACCTGGGACACCACCCT+CGG | - | chr8_3:11915443-11915462 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 11911609 | 11916104 | 11911609 | ID=Msa1276930;Name=Msa1276930 |
| chr8_3 | mRNA | 11911609 | 11916104 | 11911609 | ID=Msa1276930-mRNA-1;Parent=Msa1276930;Name=Msa1276930-mRNA-1;_AED=0.13;_eAED=0.13;_QI=62|0.66|0.71|0.85|1|1|7|567|246 |
| chr8_3 | exon | 11911609 | 11911722 | 11911609 | ID=Msa1276930-mRNA-1:exon:4814;Parent=Msa1276930-mRNA-1 |
| chr8_3 | exon | 11911796 | 11911909 | 11911796 | ID=Msa1276930-mRNA-1:exon:4815;Parent=Msa1276930-mRNA-1 |
| chr8_3 | exon | 11912009 | 11912154 | 11912009 | ID=Msa1276930-mRNA-1:exon:4816;Parent=Msa1276930-mRNA-1 |
| chr8_3 | exon | 11913004 | 11913084 | 11913004 | ID=Msa1276930-mRNA-1:exon:4817;Parent=Msa1276930-mRNA-1 |
| chr8_3 | exon | 11913199 | 11913284 | 11913199 | ID=Msa1276930-mRNA-1:exon:4818;Parent=Msa1276930-mRNA-1 |
| chr8_3 | exon | 11914863 | 11914923 | 11914863 | ID=Msa1276930-mRNA-1:exon:4819;Parent=Msa1276930-mRNA-1 |
| chr8_3 | exon | 11915337 | 11916104 | 11915337 | ID=Msa1276930-mRNA-1:exon:4820;Parent=Msa1276930-mRNA-1 |
| chr8_3 | five_prime_UTR | 11911609 | 11911670 | 11911609 | ID=Msa1276930-mRNA-1:five_prime_utr;Parent=Msa1276930-mRNA-1 |
| chr8_3 | CDS | 11911671 | 11911722 | 11911671 | ID=Msa1276930-mRNA-1:cds;Parent=Msa1276930-mRNA-1 |
| chr8_3 | CDS | 11911796 | 11911909 | 11911796 | ID=Msa1276930-mRNA-1:cds;Parent=Msa1276930-mRNA-1 |
| chr8_3 | CDS | 11912009 | 11912154 | 11912009 | ID=Msa1276930-mRNA-1:cds;Parent=Msa1276930-mRNA-1 |
| chr8_3 | CDS | 11913004 | 11913084 | 11913004 | ID=Msa1276930-mRNA-1:cds;Parent=Msa1276930-mRNA-1 |
| chr8_3 | CDS | 11913199 | 11913284 | 11913199 | ID=Msa1276930-mRNA-1:cds;Parent=Msa1276930-mRNA-1 |
| chr8_3 | CDS | 11914863 | 11914923 | 11914863 | ID=Msa1276930-mRNA-1:cds;Parent=Msa1276930-mRNA-1 |
| chr8_3 | CDS | 11915337 | 11915537 | 11915337 | ID=Msa1276930-mRNA-1:cds;Parent=Msa1276930-mRNA-1 |
| chr8_3 | three_prime_UTR | 11915538 | 11916104 | 11915538 | ID=Msa1276930-mRNA-1:three_prime_utr;Parent=Msa1276930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
