Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766810 | XP_003613950.2 | 97.006 | 334 | 10 | 0 | 1 | 334 | 1 | 334 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766810 | sp|F4I241|BUB33_ARATH | 53.443 | 305 | 141 | 1 | 16 | 320 | 11 | 314 | 5.12e-115 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766810 | G7JWN6 | 97.006 | 334 | 10 | 0 | 1 | 334 | 1 | 334 | 0.0 | 667 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004860 | Msa0766810 | 0.807630 | 4.601024e-50 | -8.615850e-47 |
| Msa0004920 | Msa0766810 | 0.830270 | 3.227961e-55 | -8.615850e-47 |
| Msa0017510 | Msa0766810 | 0.805911 | 1.061789e-49 | -8.615850e-47 |
| Msa0037700 | Msa0766810 | 0.816168 | 6.353360e-52 | -8.615850e-47 |
| Msa0051770 | Msa0766810 | 0.821083 | 4.875810e-53 | -8.615850e-47 |
| Msa0089360 | Msa0766810 | 0.806526 | 7.883208e-50 | -8.615850e-47 |
| Msa0638070 | Msa0766810 | 0.801201 | 1.006984e-48 | -8.615850e-47 |
| Msa0654720 | Msa0766810 | 0.804750 | 1.859410e-49 | -8.615850e-47 |
| Msa0657610 | Msa0766810 | 0.801357 | 9.353495e-49 | -8.615850e-47 |
| Msa0657970 | Msa0766810 | 0.808087 | 3.678747e-50 | -8.615850e-47 |
| Msa0709500 | Msa0766810 | 0.814347 | 1.613915e-51 | -8.615850e-47 |
| Msa0715700 | Msa0766810 | 0.808710 | 2.709519e-50 | -8.615850e-47 |
| Msa0724830 | Msa0766810 | 0.809035 | 2.308133e-50 | -8.615850e-47 |
| Msa0739120 | Msa0766810 | 0.827614 | 1.419833e-54 | -8.615850e-47 |
| Msa0766810 | Msa0788710 | 0.830698 | 2.536867e-55 | -8.615850e-47 |
| Msa0766810 | Msa0790390 | -0.816620 | 5.034688e-52 | -8.615850e-47 |
| Msa0766810 | Msa0790850 | 0.812930 | 3.308311e-51 | -8.615850e-47 |
| Msa0766810 | Msa0829620 | 0.817650 | 2.953779e-52 | -8.615850e-47 |
| Msa0766810 | Msa0846630 | 0.825410 | 4.758353e-54 | -8.615850e-47 |
| Msa0766810 | Msa0867890 | 0.821207 | 4.564823e-53 | -8.615850e-47 |
| Msa0766810 | Msa0871400 | 0.802998 | 4.299879e-49 | -8.615850e-47 |
| Msa0766810 | Msa0876200 | 0.814302 | 1.651000e-51 | -8.615850e-47 |
| Msa0766810 | Msa0880140 | 0.803892 | 2.806794e-49 | -8.615850e-47 |
| Msa0766810 | Msa0896750 | 0.812424 | 4.269836e-51 | -8.615850e-47 |
| Msa0766810 | Msa0923330 | 0.804157 | 2.471918e-49 | -8.615850e-47 |
| Msa0766810 | Msa0941730 | 0.807559 | 4.765291e-50 | -8.615850e-47 |
| Msa0766810 | Msa0959360 | 0.802976 | 4.343963e-49 | -8.615850e-47 |
| Msa0766810 | Msa0970030 | 0.801955 | 7.053661e-49 | -8.615850e-47 |
| Msa0766810 | Msa1003750 | 0.813748 | 2.187638e-51 | -8.615850e-47 |
| Msa0766810 | Msa1012370 | 0.803508 | 3.371842e-49 | -8.615850e-47 |
| Msa0766810 | Msa1037700 | -0.829812 | 4.175028e-55 | -8.615850e-47 |
| Msa0766810 | Msa1082500 | 0.813480 | 2.505367e-51 | -8.615850e-47 |
| Msa0766810 | Msa1098400 | 0.816298 | 5.943931e-52 | -8.615850e-47 |
| Msa0766810 | Msa1098420 | 0.801156 | 1.028393e-48 | -8.615850e-47 |
| Msa0766810 | Msa1125760 | 0.809875 | 1.524353e-50 | -8.615850e-47 |
| Msa0766810 | Msa1130210 | -0.808576 | 2.894016e-50 | -8.615850e-47 |
| Msa0766810 | Msa1140690 | 0.805817 | 1.111413e-49 | -8.615850e-47 |
| Msa0766810 | Msa1170730 | 0.808368 | 3.204904e-50 | -8.615850e-47 |
| Msa0766810 | Msa1171360 | 0.813859 | 2.068006e-51 | -8.615850e-47 |
| Msa0766810 | Msa1172670 | 0.814774 | 1.298066e-51 | -8.615850e-47 |
| Msa0766810 | Msa1193290 | 0.802527 | 5.378008e-49 | -8.615850e-47 |
| Msa0766810 | Msa1199220 | 0.822676 | 2.085062e-53 | -8.615850e-47 |
| Msa0766810 | Msa1199560 | 0.803589 | 3.242941e-49 | -8.615850e-47 |
| Msa0766810 | Msa1203250 | 0.800253 | 1.571826e-48 | -8.615850e-47 |
| Msa0766810 | Msa1214890 | 0.825758 | 3.937059e-54 | -8.615850e-47 |
| Msa0766810 | Msa1217830 | 0.801743 | 7.796033e-49 | -8.615850e-47 |
| Msa0766810 | Msa1217940 | 0.800303 | 1.535216e-48 | -8.615850e-47 |
| Msa0766810 | Msa1240180 | 0.817953 | 2.523819e-52 | -8.615850e-47 |
| Msa0766810 | Msa1240210 | 0.814163 | 1.771680e-51 | -8.615850e-47 |
| Msa0766810 | Msa1240310 | 0.804568 | 2.029492e-49 | -8.615850e-47 |
| Msa0766810 | Msa1249240 | 0.806215 | 9.163832e-50 | -8.615850e-47 |
| Msa0766810 | Msa1276440 | 0.800923 | 1.147483e-48 | -8.615850e-47 |
| Msa0766810 | Msa1300490 | 0.815045 | 1.130164e-51 | -8.615850e-47 |
| Msa0766810 | Msa1303250 | 0.828062 | 1.107745e-54 | -8.615850e-47 |
| Msa0766810 | Msa1308380 | 0.807873 | 4.085198e-50 | -8.615850e-47 |
| Msa0766810 | Msa1314340 | 0.825262 | 5.160647e-54 | -8.615850e-47 |
| Msa0766810 | Msa1320620 | 0.827568 | 1.456332e-54 | -8.615850e-47 |
| Msa0766810 | Msa1320740 | 0.806092 | 9.729374e-50 | -8.615850e-47 |
| Msa0766810 | Msa1328700 | 0.803996 | 2.670397e-49 | -8.615850e-47 |
| Msa0766810 | Msa1331910 | 0.833499 | 5.150155e-56 | -8.615850e-47 |
| Msa0766810 | Msa1342900 | 0.810644 | 1.040282e-50 | -8.615850e-47 |
| Msa0766810 | Msa1385670 | 0.820103 | 8.185109e-53 | -8.615850e-47 |
| Msa0766810 | Msa1403580 | -0.809843 | 1.548919e-50 | -8.615850e-47 |
| Msa0766810 | Msa1443290 | -0.826253 | 3.002058e-54 | -8.615850e-47 |
| Msa0766810 | Msa1463670 | 0.806238 | 9.063742e-50 | -8.615850e-47 |
| Msa0133130 | Msa0766810 | 0.819821 | 9.495803e-53 | -8.615850e-47 |
| Msa0140780 | Msa0766810 | 0.800219 | 1.597372e-48 | -8.615850e-47 |
| Msa0157100 | Msa0766810 | 0.803478 | 3.419694e-49 | -8.615850e-47 |
| Msa0157290 | Msa0766810 | 0.805347 | 1.394798e-49 | -8.615850e-47 |
| Msa0159770 | Msa0766810 | 0.808782 | 2.615093e-50 | -8.615850e-47 |
| Msa0173990 | Msa0766810 | 0.828117 | 1.074469e-54 | -8.615850e-47 |
| Msa0188680 | Msa0766810 | -0.827508 | 1.505382e-54 | -8.615850e-47 |
| Msa0191250 | Msa0766810 | 0.817794 | 2.740693e-52 | -8.615850e-47 |
| Msa0197660 | Msa0766810 | 0.806048 | 9.938868e-50 | -8.615850e-47 |
| Msa0222620 | Msa0766810 | 0.822597 | 2.175592e-53 | -8.615850e-47 |
| Msa0372660 | Msa0766810 | 0.817106 | 3.916071e-52 | -8.615850e-47 |
| Msa0380740 | Msa0766810 | 0.800251 | 1.573486e-48 | -8.615850e-47 |
| Msa0395870 | Msa0766810 | 0.802560 | 5.294352e-49 | -8.615850e-47 |
| Msa0419820 | Msa0766810 | 0.802715 | 4.917553e-49 | -8.615850e-47 |
| Msa0426330 | Msa0766810 | 0.805563 | 1.256388e-49 | -8.615850e-47 |
| Msa0431060 | Msa0766810 | 0.808429 | 3.111325e-50 | -8.615850e-47 |
| Msa0473080 | Msa0766810 | 0.824729 | 6.892432e-54 | -8.615850e-47 |
| Msa0243100 | Msa0766810 | 0.806232 | 9.092636e-50 | -8.615850e-47 |
| Msa0264930 | Msa0766810 | 0.817864 | 2.642901e-52 | -8.615850e-47 |
| Msa0270100 | Msa0766810 | 0.817845 | 2.669322e-52 | -8.615850e-47 |
| Msa0270220 | Msa0766810 | -0.820070 | 8.330989e-53 | -8.615850e-47 |
| Msa0287650 | Msa0766810 | 0.817509 | 3.178107e-52 | -8.615850e-47 |
| Msa0307830 | Msa0766810 | -0.829161 | 6.010401e-55 | -8.615850e-47 |
| Msa0311860 | Msa0766810 | 0.808262 | 3.376304e-50 | -8.615850e-47 |
| Msa0317510 | Msa0766810 | 0.810216 | 1.286881e-50 | -8.615850e-47 |
| Msa0329320 | Msa0766810 | 0.800501 | 1.399402e-48 | -8.615850e-47 |
| Msa0484780 | Msa0766810 | 0.826834 | 2.182678e-54 | -8.615850e-47 |
| Msa0517330 | Msa0766810 | 0.803323 | 3.682820e-49 | -8.615850e-47 |
| Msa0547720 | Msa0766810 | 0.806103 | 9.678063e-50 | -8.615850e-47 |
| Msa0551890 | Msa0766810 | 0.811620 | 6.392776e-51 | -8.615850e-47 |
| Msa0561230 | Msa0766810 | 0.804838 | 1.782637e-49 | -8.615850e-47 |
| Msa0601850 | Msa0766810 | 0.802343 | 5.868319e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766810 | MtrunA17_Chr5g0418221 | 97.006 | 334 | 10 | 0 | 1 | 334 | 1 | 334 | 0.0 | 667 |
| Msa0766810 | MtrunA17_Chr5g0393711 | 37.346 | 324 | 195 | 5 | 8 | 325 | 11 | 332 | 5.34e-69 | 219 |
| Msa0766810 | MtrunA17_Chr2g0278901 | 28.313 | 332 | 200 | 14 | 9 | 318 | 17 | 332 | 7.10e-30 | 116 |
| Msa0766810 | MtrunA17_Chr8g0367631 | 26.959 | 319 | 218 | 7 | 2 | 312 | 8 | 319 | 1.78e-29 | 115 |
| Msa0766810 | MtrunA17_Chr1g0198231 | 25.846 | 325 | 214 | 8 | 8 | 312 | 12 | 329 | 9.99e-22 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766810 | AT1G69400.1 | 53.443 | 305 | 141 | 1 | 16 | 320 | 11 | 314 | 5.20e-116 | 338 |
| Msa0766810 | AT1G69400.2 | 49.569 | 232 | 116 | 1 | 16 | 247 | 11 | 241 | 5.87e-75 | 232 |
| Msa0766810 | AT1G49910.1 | 38.006 | 321 | 191 | 5 | 11 | 325 | 9 | 327 | 1.14e-73 | 231 |
| Msa0766810 | AT3G19590.1 | 38.037 | 326 | 194 | 6 | 6 | 325 | 5 | 328 | 8.86e-72 | 226 |
| Msa0766810 | AT1G80670.1 | 27.134 | 328 | 220 | 9 | 3 | 318 | 10 | 330 | 1.09e-30 | 119 |
Find 100 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGACCATCCTTTGATTT+TGG | 0.181469 | 5_2:+29114725 | None:intergenic |
| TGATGACATGTACTTAATTT+AGG | 0.209279 | 5_2:-29113713 | Msa0766810:three_prime_UTR |
| GCAGGTCTGTTAATTACTTC+TGG | 0.226200 | 5_2:-29116328 | Msa0766810:intron |
| GGATGGACGGGTTGCGTTGC+AGG | 0.250415 | 5_2:-29115472 | Msa0766810:CDS |
| TATAGGTATGACTTGCATTC+TGG | 0.273951 | 5_2:-29117396 | Msa0766810:intron |
| CATGTCTGTCTCGGGGTTTA+AGG | 0.290281 | 5_2:-29116221 | Msa0766810:CDS |
| ATTAGGCGCAAATTGAATTC+TGG | 0.291516 | 5_2:+29118205 | None:intergenic |
| ATGAGAAGGTTGTTAGAATT+AGG | 0.305472 | 5_2:+29118188 | None:intergenic |
| CCATGTGTGTGCCTATTAAT+TGG | 0.312422 | 5_2:-29113676 | Msa0766810:three_prime_UTR |
| GTCTTCTCTATTTCCTCAAA+TGG | 0.319840 | 5_2:+29113640 | None:intergenic |
| AAGGACCTTTGACAAGGTTT+AGG | 0.330490 | 5_2:-29113898 | Msa0766810:three_prime_UTR |
| ATTTACTTGTTCCATTGAAA+TGG | 0.340744 | 5_2:-29114053 | Msa0766810:three_prime_UTR |
| TATACTAGGTTCCAATTAAT+AGG | 0.340747 | 5_2:+29113665 | None:intergenic |
| CAAGGCTCCATTGACAGGTT+TGG | 0.364972 | 5_2:+29116142 | None:intergenic |
| CTGGAAATTGCGTCACTGAT+TGG | 0.369102 | 5_2:+29118224 | None:intergenic |
| ATAGTACGACTTTAAAAGAT+TGG | 0.370871 | 5_2:-29113921 | Msa0766810:three_prime_UTR |
| ATAATTTCTATTAGTATGTC+TGG | 0.377820 | 5_2:-29114594 | Msa0766810:intron |
| ACAACCTTCTCATTTCATCT+TGG | 0.384200 | 5_2:-29118178 | Msa0766810:CDS |
| ATCCTTGTCTTACAACCATT+CGG | 0.387136 | 5_2:-29114356 | Msa0766810:CDS |
| CAACCTTCTCATTTCATCTT+GGG | 0.388828 | 5_2:-29118177 | Msa0766810:CDS |
| TTCCTCAAATGGGCTATACT+AGG | 0.389515 | 5_2:+29113651 | None:intergenic |
| GCTTTCTCTGTTGCTTCTGA+TGG | 0.394841 | 5_2:-29117962 | Msa0766810:CDS |
| TTGACAAGAAATTATTATCA+TGG | 0.402514 | 5_2:-29116303 | Msa0766810:CDS |
| AGTTGAGAATTCCATTTCAA+TGG | 0.405409 | 5_2:+29114042 | None:intergenic |
| ACGAAGGTTATGCTACCATA+TGG | 0.423142 | 5_2:-29114551 | Msa0766810:CDS |
| TCCTTGTCTTACAACCATTC+GGG | 0.424268 | 5_2:-29114355 | Msa0766810:CDS |
| AAGTAACTTACATGTTTCAT+TGG | 0.428960 | 5_2:+29117320 | None:intergenic |
| AAAGGATGGTCAGCATCATT+TGG | 0.429051 | 5_2:-29114717 | Msa0766810:CDS |
| CATTGCAAGGCTCCATTGAC+AGG | 0.429640 | 5_2:+29116137 | None:intergenic |
| ATTGACTCCATGTCTGTCTC+GGG | 0.434117 | 5_2:-29116229 | Msa0766810:CDS |
| CTTCTCAATTTCAGTTTCCC+AGG | 0.443718 | 5_2:-29114396 | Msa0766810:intron |
| CAAGCATATCACCAATGCTT+AGG | 0.446858 | 5_2:+29114116 | None:intergenic |
| TGTGTGGTTATAGTTACCTT+TGG | 0.450402 | 5_2:+29114093 | None:intergenic |
| GATGACATGGCAACATGTAT+TGG | 0.454058 | 5_2:-29117348 | Msa0766810:CDS |
| CATCAAATTCGAATGACATT+GGG | 0.454646 | 5_2:-29115440 | Msa0766810:intron |
| AAGATTTGATGAGGACTTCA+AGG | 0.462312 | 5_2:-29113962 | Msa0766810:three_prime_UTR |
| CCTACTTCTAGCATCCCATA+TGG | 0.464155 | 5_2:+29114536 | None:intergenic |
| TCAAGTGTTTATACATAAAG+TGG | 0.465769 | 5_2:-29114178 | Msa0766810:CDS |
| CAGTTGGATCAGTGGATGGA+CGG | 0.467705 | 5_2:-29115485 | Msa0766810:CDS |
| GGTAACTATAACCACACAAC+TGG | 0.467731 | 5_2:-29114088 | Msa0766810:three_prime_UTR |
| CTTCTGATGGATTCATTCGA+AGG | 0.471299 | 5_2:-29117949 | Msa0766810:intron |
| TGCAACACTATTTGAGTACC+TGG | 0.472971 | 5_2:+29114378 | None:intergenic |
| TCTTCTCTATTTCCTCAAAT+GGG | 0.474975 | 5_2:+29113641 | None:intergenic |
| TTTAAGGTTACTGTAGGCAT+TGG | 0.475663 | 5_2:-29116205 | Msa0766810:CDS |
| CGACAAACCAAACCTGTCAA+TGG | 0.476431 | 5_2:-29116149 | Msa0766810:CDS |
| ATGGTATAGAATTAACAGAT+TGG | 0.477566 | 5_2:-29113799 | Msa0766810:three_prime_UTR |
| GATTGACTCCATGTCTGTCT+CGG | 0.477649 | 5_2:-29116230 | Msa0766810:CDS |
| TCATCAAATTCGAATGACAT+TGG | 0.478333 | 5_2:-29115441 | Msa0766810:CDS |
| TGGTACATACCTTCTGCATA+AGG | 0.481320 | 5_2:+29116085 | None:intergenic |
| CATGTACCTAACAAAACTCT+AGG | 0.484499 | 5_2:-29113768 | Msa0766810:three_prime_UTR |
| AAAGTGGACAACATTGATAT+CGG | 0.487576 | 5_2:-29114162 | Msa0766810:CDS |
| TTTCTTGCAGGATTTGCAGT+TGG | 0.488184 | 5_2:-29115501 | Msa0766810:intron |
| TCTGGAATTGTTGACCCAAT+GGG | 0.493986 | 5_2:-29117378 | Msa0766810:CDS |
| TGACAAGAAATTATTATCAT+GGG | 0.503526 | 5_2:-29116302 | Msa0766810:CDS |
| AACCTAGTATAGCCCATTTG+AGG | 0.509249 | 5_2:-29113653 | Msa0766810:three_prime_UTR |
| TGAAACAATGTGGTTCTTCG+CGG | 0.509783 | 5_2:+29118334 | None:intergenic |
| TGTCATCATGACTACCCATT+GGG | 0.524151 | 5_2:+29117364 | None:intergenic |
| ATGTCTGGTGCATTTGTCAC+TGG | 0.544544 | 5_2:-29114579 | Msa0766810:CDS |
| TACGACTTTAAAAGATTGGA+AGG | 0.549045 | 5_2:-29113917 | Msa0766810:three_prime_UTR |
| TCGGGGTTTAAGGTTACTGT+AGG | 0.551548 | 5_2:-29116211 | Msa0766810:CDS |
| GACTTCAAGGAAGCATCTAA+AGG | 0.552214 | 5_2:-29113949 | Msa0766810:three_prime_UTR |
| AGTTCAATTCCTTATGCAGA+AGG | 0.553343 | 5_2:-29116094 | Msa0766810:intron |
| AAGTAGGAAAAGACTAATTG+AGG | 0.554607 | 5_2:-29114520 | Msa0766810:intron |
| CGAAGGTTATGCTACCATAT+GGG | 0.555039 | 5_2:-29114550 | Msa0766810:CDS |
| CTTAATTGTGTACCATTGCA+AGG | 0.556384 | 5_2:+29116124 | None:intergenic |
| ATACGATTTCGACGCTTCTG+TGG | 0.568988 | 5_2:-29118050 | Msa0766810:CDS |
| TTCTGGAATTGTTGACCCAA+TGG | 0.569817 | 5_2:-29117379 | Msa0766810:CDS |
| CCATATGGGATGCTAGAAGT+AGG | 0.571549 | 5_2:-29114536 | Msa0766810:CDS |
| AGAATTAACAGATTGGATGA+TGG | 0.572722 | 5_2:-29113792 | Msa0766810:three_prime_UTR |
| TCTTGATTGTTGTTTCTCTG+AGG | 0.576939 | 5_2:-29117996 | Msa0766810:CDS |
| TCGAAGGAAAACCTAAGCAT+TGG | 0.577457 | 5_2:-29114127 | Msa0766810:exon |
| ACTCTGACAGATATACGTTC+CGG | 0.578341 | 5_2:-29114754 | Msa0766810:intron |
| TTTGCAGTTGGATCAGTGGA+TGG | 0.578867 | 5_2:-29115489 | Msa0766810:CDS |
| ATGTCATCATGACTACCCAT+TGG | 0.578901 | 5_2:+29117363 | None:intergenic |
| CCGGTGTCATCCAAAATCAA+AGG | 0.586288 | 5_2:-29114735 | Msa0766810:CDS |
| GATTGGAAGGACCTTTGACA+AGG | 0.595860 | 5_2:-29113904 | Msa0766810:three_prime_UTR |
| TCCCGAATGGTTGTAAGACA+AGG | 0.598890 | 5_2:+29114354 | None:intergenic |
| CTTAAACCCCGAGACAGACA+TGG | 0.605467 | 5_2:+29116222 | None:intergenic |
| CAGCTAGAAGCTGTCCCGAA+TGG | 0.610239 | 5_2:+29114341 | None:intergenic |
| AGTTGGATCAGTGGATGGAC+GGG | 0.611964 | 5_2:-29115484 | Msa0766810:CDS |
| TTATGGGTGAAGATTTGATG+AGG | 0.612117 | 5_2:-29113971 | Msa0766810:three_prime_UTR |
| CCAATTAATAGGCACACACA+TGG | 0.612282 | 5_2:+29113676 | None:intergenic |
| TTGACTCCATGTCTGTCTCG+GGG | 0.612513 | 5_2:-29116228 | Msa0766810:CDS |
| CTGTCAATGGAGCCTTGCAA+TGG | 0.616655 | 5_2:-29116136 | Msa0766810:CDS |
| ATGTACCTAACAAAACTCTA+GGG | 0.618634 | 5_2:-29113767 | Msa0766810:three_prime_UTR |
| TCGGATCAAGTTCTGCTCGA+AGG | 0.619168 | 5_2:-29114143 | Msa0766810:CDS |
| GCAAAGATTAACCAGTTGTG+TGG | 0.619682 | 5_2:+29114077 | None:intergenic |
| ACTTTATGTATAAACACTTG+AGG | 0.625298 | 5_2:+29114180 | None:intergenic |
| TGTCATCCAAAATCAAAGGA+TGG | 0.627782 | 5_2:-29114731 | Msa0766810:CDS |
| TTATGTATAAACACTTGAGG+AGG | 0.628759 | 5_2:+29114183 | None:intergenic |
| TCATCAACTAAAAGCAAACA+AGG | 0.631899 | 5_2:+29113730 | None:intergenic |
| AGGATTTGCAGTTGGATCAG+TGG | 0.634576 | 5_2:-29115493 | Msa0766810:CDS |
| TGTCCCAAGATGAAATGAGA+AGG | 0.640689 | 5_2:+29118174 | None:intergenic |
| AGTTACGTAAATCATAAACA+TGG | 0.641309 | 5_2:+29116173 | None:intergenic |
| AATGGGTAGTCATGATGACA+TGG | 0.647605 | 5_2:-29117361 | Msa0766810:CDS |
| ATTGGTGATATGCTTGCCAA+AGG | 0.650528 | 5_2:-29114109 | Msa0766810:three_prime_UTR |
| TTTGTCACTGGTGATAACGA+AGG | 0.671951 | 5_2:-29114567 | Msa0766810:CDS |
| GCAACACTATTTGAGTACCT+GGG | 0.674620 | 5_2:+29114379 | None:intergenic |
| AGAAGCAACAGAGAAAGCAA+CGG | 0.681074 | 5_2:+29117967 | None:intergenic |
| GATTTGAATTTGAAACAATG+TGG | 0.712005 | 5_2:+29118324 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTTATAATAATTTAAA+TGG | + | chr5_2:29117361-29117380 | None:intergenic | 0.0% |
| !! | TTGTTAATAATTCTAAATTA+TGG | - | chr5_2:29116855-29116874 | Msa0766810:intron | 10.0% |
| !! | TTATAACCATATTTAAATTG+AGG | - | chr5_2:29114207-29114226 | Msa0766810:intron | 15.0% |
| !! | TATAACCATATTTAAATTGA+GGG | - | chr5_2:29114208-29114227 | Msa0766810:intron | 15.0% |
| !! | ATATTTAAGTGATCTATTAT+TGG | - | chr5_2:29115021-29115040 | Msa0766810:intron | 15.0% |
| !! | TATTCATGAAAATTGAAAAA+TGG | + | chr5_2:29115237-29115256 | None:intergenic | 15.0% |
| !! | ATGATTAATAAATTCTGAAT+AGG | - | chr5_2:29115350-29115369 | Msa0766810:intron | 15.0% |
| !! | TGATTAATAAATTCTGAATA+GGG | - | chr5_2:29115351-29115370 | Msa0766810:intron | 15.0% |
| !! | AATATACTACATTTATGATA+TGG | + | chr5_2:29115442-29115461 | None:intergenic | 15.0% |
| !!! | ATACTTTTAAGAATATGATT+TGG | + | chr5_2:29115544-29115563 | None:intergenic | 15.0% |
| !! | AAATTATTAATAAATGCAAC+TGG | + | chr5_2:29116971-29116990 | None:intergenic | 15.0% |
| !!! | GAATCAAAAATATTTTATGT+TGG | - | chr5_2:29117164-29117183 | Msa0766810:intron | 15.0% |
| !! | TAACAAATAGTCATTAATGT+CGG | + | chr5_2:29114254-29114273 | None:intergenic | 20.0% |
| !! | AAATGGAACAAATAAAAACA+AGG | + | chr5_2:29114717-29114736 | None:intergenic | 20.0% |
| !!! | TTTTTATTTGTTCCATTTGT+TGG | - | chr5_2:29114719-29114738 | Msa0766810:CDS | 20.0% |
| !! | TTTGTTAATATGACATTGAA+AGG | - | chr5_2:29115115-29115134 | Msa0766810:intron | 20.0% |
| !! | ATGTAATGTATAATTACAAC+TGG | + | chr5_2:29115495-29115514 | None:intergenic | 20.0% |
| !! | AATAAAAATTGTTTGGATGT+TGG | - | chr5_2:29115569-29115588 | Msa0766810:intron | 20.0% |
| !! | ATCATAATATGAACTTTACA+GGG | + | chr5_2:29115639-29115658 | None:intergenic | 20.0% |
| !! | TTGACAAGAAATTATTATCA+TGG | - | chr5_2:29115694-29115713 | Msa0766810:intron | 20.0% |
| !! | TGACAAGAAATTATTATCAT+GGG | - | chr5_2:29115695-29115714 | Msa0766810:intron | 20.0% |
| !! | ATAAAATAAGACAGATTTGA+TGG | + | chr5_2:29115935-29115954 | None:intergenic | 20.0% |
| !!! | TTATTTTATTTTGTCAACCT+TGG | - | chr5_2:29115946-29115965 | Msa0766810:intron | 20.0% |
| !!! | ACTTTTTTGTTAGAAGAATA+GGG | + | chr5_2:29116137-29116156 | None:intergenic | 20.0% |
| !!! | TACTTTTTTGTTAGAAGAAT+AGG | + | chr5_2:29116138-29116157 | None:intergenic | 20.0% |
| !! | ATTCTTCTAACAAAAAAGTA+TGG | - | chr5_2:29116138-29116157 | Msa0766810:CDS | 20.0% |
| !!! | TTGTCTTATTTTTAGTTACT+TGG | - | chr5_2:29116373-29116392 | Msa0766810:intron | 20.0% |
| !!! | TGTCTTATTTTTAGTTACTT+GGG | - | chr5_2:29116374-29116393 | Msa0766810:intron | 20.0% |
| !!! | ATAATGCACCTAATTTTTTT+GGG | + | chr5_2:29116632-29116651 | None:intergenic | 20.0% |
| !!! | TATAATGCACCTAATTTTTT+TGG | + | chr5_2:29116633-29116652 | None:intergenic | 20.0% |
| !! | TGGTCTCAAATATAATTATT+AGG | - | chr5_2:29116936-29116955 | Msa0766810:intron | 20.0% |
| !!! | AAAACAAATTTAGTTTTGAG+AGG | + | chr5_2:29117138-29117157 | None:intergenic | 20.0% |
| !! | ATAATTTCTATTAGTATGTC+TGG | - | chr5_2:29117403-29117422 | Msa0766810:intron | 20.0% |
| !! | AATTGAGAAGAAAAAAAAGA+TGG | + | chr5_2:29117591-29117610 | None:intergenic | 20.0% |
| !!! | ATTGTAGTTTCTTCTTTTTA+TGG | - | chr5_2:29118009-29118028 | Msa0766810:CDS | 20.0% |
| !!! | TTGTAGTTTCTTCTTTTTAT+GGG | - | chr5_2:29118010-29118029 | Msa0766810:CDS | 20.0% |
| !! | CTTGTATGCAAATTTAAAAA+TGG | - | chr5_2:29118179-29118198 | Msa0766810:CDS | 20.0% |
| !! | GATTTGAATTTGAAACAATG+TGG | + | chr5_2:29113676-29113695 | None:intergenic | 25.0% |
| !!! | ATTGAATCGATTTTGTGTTT+TGG | - | chr5_2:29113905-29113924 | Msa0766810:three_prime_UTR | 25.0% |
| !!! | TGACATTTATTTTGCTGAAA+TGG | - | chr5_2:29114150-29114169 | Msa0766810:CDS | 25.0% |
| !!! | GACATTTATTTTGCTGAAAT+GGG | - | chr5_2:29114151-29114170 | Msa0766810:CDS | 25.0% |
| ! | TTTCTCCCTCAATTTAAATA+TGG | + | chr5_2:29114216-29114235 | None:intergenic | 25.0% |
| ! | GTTTAAAAGACATGCATTAT+CGG | - | chr5_2:29114356-29114375 | Msa0766810:CDS | 25.0% |
| ! | AAGTAACTTACATGTTTCAT+TGG | + | chr5_2:29114680-29114699 | None:intergenic | 25.0% |
| ! | AGATCACATTATAGAAAAGA+TGG | - | chr5_2:29114804-29114823 | Msa0766810:intron | 25.0% |
| ! | GGAAAACCAAGAAAAAATAT+AGG | - | chr5_2:29114977-29114996 | Msa0766810:intron | 25.0% |
| ! | ATGACATTGAAAGGATATAT+TGG | - | chr5_2:29115124-29115143 | Msa0766810:intron | 25.0% |
| ! | GATCATAATATGAACTTTAC+AGG | + | chr5_2:29115640-29115659 | None:intergenic | 25.0% |
| ! | AGTTACGTAAATCATAAACA+TGG | + | chr5_2:29115827-29115846 | None:intergenic | 25.0% |
| !! | AACATGTTGCTATTAAGATT+TGG | - | chr5_2:29115969-29115988 | Msa0766810:intron | 25.0% |
| !!! | TCTTTAGAATTGAGAATTCA+GGG | + | chr5_2:29116038-29116057 | None:intergenic | 25.0% |
| ! | CCTATTCTTAACCTAATATT+GGG | - | chr5_2:29116059-29116078 | Msa0766810:intron | 25.0% |
| !!! | CTTTTTTGTTAGAAGAATAG+GGG | + | chr5_2:29116136-29116155 | None:intergenic | 25.0% |
| ! | TAACAAAAACTTAAGCTGTT+AGG | + | chr5_2:29116240-29116259 | None:intergenic | 25.0% |
| !!! | ATGCTATTTGCATAGTTTTT+AGG | + | chr5_2:29116309-29116328 | None:intergenic | 25.0% |
| ! | TTAAATATGCATACGTGAAA+TGG | + | chr5_2:29116590-29116609 | None:intergenic | 25.0% |
| !! | TCTACAATTTTGTTAAACAG+CGG | - | chr5_2:29116760-29116779 | Msa0766810:intron | 25.0% |
| ! | TAGCAAATTATTAGAACATG+TGG | + | chr5_2:29117217-29117236 | None:intergenic | 25.0% |
| ! | AACTAAACACAAATGAAACA+TGG | + | chr5_2:29117513-29117532 | None:intergenic | 25.0% |
| ! | GAAAACTTTCTTAAACTTCA+TGG | + | chr5_2:29117753-29117772 | None:intergenic | 25.0% |
| !! | TGAAGTTTAAGAAAGTTTTC+TGG | - | chr5_2:29117753-29117772 | Msa0766810:intron | 25.0% |
| ! | ACTTTATGTATAAACACTTG+AGG | + | chr5_2:29117820-29117839 | None:intergenic | 25.0% |
| ! | TCAAGTGTTTATACATAAAG+TGG | - | chr5_2:29117819-29117838 | Msa0766810:intron | 25.0% |
| ! | ATTTACTTGTTCCATTGAAA+TGG | - | chr5_2:29117944-29117963 | Msa0766810:intron | 25.0% |
| !! | ATAGTACGACTTTAAAAGAT+TGG | - | chr5_2:29118076-29118095 | Msa0766810:intron | 25.0% |
| ! | ATGGTATAGAATTAACAGAT+TGG | - | chr5_2:29118198-29118217 | Msa0766810:CDS | 25.0% |
| ! | TGATGACATGTACTTAATTT+AGG | - | chr5_2:29118284-29118303 | Msa0766810:exon | 25.0% |
| ! | TATACTAGGTTCCAATTAAT+AGG | + | chr5_2:29118335-29118354 | None:intergenic | 25.0% |
| ATGAGAAGGTTGTTAGAATT+AGG | + | chr5_2:29113812-29113831 | None:intergenic | 30.0% | |
| !! | TAAGTTTCGTTTTTCTTGTG+TGG | - | chr5_2:29113849-29113868 | Msa0766810:three_prime_UTR | 30.0% |
| ! | ACATGGATTTTATCAATGCT+AGG | + | chr5_2:29114462-29114481 | None:intergenic | 30.0% |
| !! | AGCATTGATAAAATCCATGT+TGG | - | chr5_2:29114462-29114481 | Msa0766810:intron | 30.0% |
| AAAACATGCATCATGATCAT+AGG | + | chr5_2:29114538-29114557 | None:intergenic | 30.0% | |
| CCTATAAATTTCAGCTTAAC+AGG | + | chr5_2:29114587-29114606 | None:intergenic | 30.0% | |
| CCTGTTAAGCTGAAATTTAT+AGG | - | chr5_2:29114584-29114603 | Msa0766810:intron | 30.0% | |
| ACAAATAAAAACAAGGAGCA+AGG | + | chr5_2:29114710-29114729 | None:intergenic | 30.0% | |
| AAGCATTAGAGAGAATGTTA+GGG | - | chr5_2:29114780-29114799 | Msa0766810:intron | 30.0% | |
| AGTTATTGAATTGTCCTTCA+TGG | + | chr5_2:29114948-29114967 | None:intergenic | 30.0% | |
| AAGGACAATTCAATAACTAG+CGG | - | chr5_2:29114950-29114969 | Msa0766810:intron | 30.0% | |
| !!! | GCTTGACCTATATTTTTTCT+TGG | + | chr5_2:29114986-29115005 | None:intergenic | 30.0% |
| !! | CTATTATTGGTCTTGATTTG+TGG | - | chr5_2:29115034-29115053 | Msa0766810:intron | 30.0% |
| ATAAGAGTAGTAGGAAAGAT+AGG | + | chr5_2:29115179-29115198 | None:intergenic | 30.0% | |
| GGAGCACAAATGAAATAAAA+AGG | - | chr5_2:29115372-29115391 | Msa0766810:intron | 30.0% | |
| TACATTTATGATATGGCAAG+TGG | + | chr5_2:29115435-29115454 | None:intergenic | 30.0% | |
| !!! | ATTGTTTGGATGTTGGTTTT+AGG | - | chr5_2:29115576-29115595 | Msa0766810:intron | 30.0% |
| ATTATGATCATGATTGTTGC+AGG | - | chr5_2:29115651-29115670 | Msa0766810:intron | 30.0% | |
| !! | CTCTTTAGAATTGAGAATTC+AGG | + | chr5_2:29116039-29116058 | None:intergenic | 30.0% |
| GCCTATTCTTAACCTAATAT+TGG | - | chr5_2:29116058-29116077 | Msa0766810:intron | 30.0% | |
| CCCAATATTAGGTTAAGAAT+AGG | + | chr5_2:29116062-29116081 | None:intergenic | 30.0% | |
| ATATAAAACGCTCTTGCATT+TGG | - | chr5_2:29116173-29116192 | Msa0766810:CDS | 30.0% | |
| ! | AGACTTTGAAAAAGTTCTCA+AGG | + | chr5_2:29116354-29116373 | None:intergenic | 30.0% |
| TTAAATATCCCACGTAGTAT+CGG | + | chr5_2:29116404-29116423 | None:intergenic | 30.0% | |
| TCATCAAATTCGAATGACAT+TGG | - | chr5_2:29116556-29116575 | Msa0766810:intron | 30.0% | |
| CATCAAATTCGAATGACATT+GGG | - | chr5_2:29116557-29116576 | Msa0766810:intron | 30.0% | |
| !!! | ACCTAATTTTTTTGGGAAGA+GGG | + | chr5_2:29116625-29116644 | None:intergenic | 30.0% |
| ! | AAATGAGCAAGTTCTTTTGT+GGG | + | chr5_2:29116690-29116709 | None:intergenic | 30.0% |
| TTTCAAATGCACAACATACA+AGG | - | chr5_2:29116807-29116826 | Msa0766810:intron | 30.0% | |
| ATTAATAAATGCAACTGGCT+AGG | + | chr5_2:29116966-29116985 | None:intergenic | 30.0% | |
| TGTAAGAGAAAATCAGTCTA+GGG | + | chr5_2:29117042-29117061 | None:intergenic | 30.0% | |
| TTGTAAGAGAAAATCAGTCT+AGG | + | chr5_2:29117043-29117062 | None:intergenic | 30.0% | |
| TGATAAGATGAAACATACAG+TGG | + | chr5_2:29117332-29117351 | None:intergenic | 30.0% | |
| AAGTAGGAAAAGACTAATTG+AGG | - | chr5_2:29117477-29117496 | Msa0766810:intron | 30.0% | |
| AAACACAAATGAAACATGGT+AGG | + | chr5_2:29117509-29117528 | None:intergenic | 30.0% | |
| GTAAGGAACAAAATAAAGGT+TGG | + | chr5_2:29117785-29117804 | None:intergenic | 30.0% | |
| CTCTGTAAGGAACAAAATAA+AGG | + | chr5_2:29117789-29117808 | None:intergenic | 30.0% | |
| TTATGTATAAACACTTGAGG+AGG | + | chr5_2:29117817-29117836 | None:intergenic | 30.0% | |
| AAAGTGGACAACATTGATAT+CGG | - | chr5_2:29117835-29117854 | Msa0766810:intron | 30.0% | |
| AGTTGAGAATTCCATTTCAA+TGG | + | chr5_2:29117958-29117977 | None:intergenic | 30.0% | |
| ! | TTCTCAACTTCAGATGTTTT+TGG | - | chr5_2:29117969-29117988 | Msa0766810:CDS | 30.0% |
| ! | TCTCAACTTCAGATGTTTTT+GGG | - | chr5_2:29117970-29117989 | Msa0766810:CDS | 30.0% |
| ! | TACGACTTTAAAAGATTGGA+AGG | - | chr5_2:29118080-29118099 | Msa0766810:intron | 30.0% |
| ! | TTTTTCCTAAACCTTGTCAA+AGG | + | chr5_2:29118107-29118126 | None:intergenic | 30.0% |
| AGAATTAACAGATTGGATGA+TGG | - | chr5_2:29118205-29118224 | Msa0766810:CDS | 30.0% | |
| ATGTACCTAACAAAACTCTA+GGG | - | chr5_2:29118230-29118249 | Msa0766810:CDS | 30.0% | |
| TCATCAACTAAAAGCAAACA+AGG | + | chr5_2:29118270-29118289 | None:intergenic | 30.0% | |
| ATTAGGCGCAAATTGAATTC+TGG | + | chr5_2:29113795-29113814 | None:intergenic | 35.0% | |
| ACAACCTTCTCATTTCATCT+TGG | - | chr5_2:29113819-29113838 | Msa0766810:three_prime_UTR | 35.0% | |
| CAACCTTCTCATTTCATCTT+GGG | - | chr5_2:29113820-29113839 | Msa0766810:three_prime_UTR | 35.0% | |
| !! | TCTTGATTGTTGTTTCTCTG+AGG | - | chr5_2:29114001-29114020 | Msa0766810:three_prime_UTR | 35.0% |
| ! | AATGGGCAATTTTCGTTGAA+AGG | - | chr5_2:29114168-29114187 | Msa0766810:CDS | 35.0% |
| ! | ATGGGCAATTTTCGTTGAAA+GGG | - | chr5_2:29114169-29114188 | Msa0766810:CDS | 35.0% |
| ! | GTAAACCAGTTTTACACTGA+CGG | - | chr5_2:29114380-29114399 | Msa0766810:CDS | 35.0% |
| GGAGTATGATACATCATACA+TGG | + | chr5_2:29114412-29114431 | None:intergenic | 35.0% | |
| ! | AATCCATGTTGGTCTATAAG+TGG | - | chr5_2:29114473-29114492 | Msa0766810:intron | 35.0% |
| ! | TATAGGTATGACTTGCATTC+TGG | - | chr5_2:29114601-29114620 | Msa0766810:intron | 35.0% |
| AAAAACAAGGAGCAAGGATT+AGG | + | chr5_2:29114704-29114723 | None:intergenic | 35.0% | |
| ! | TGTTCCATTTGTTGGATGAA+TGG | - | chr5_2:29114727-29114746 | Msa0766810:CDS | 35.0% |
| CAAGCATTAGAGAGAATGTT+AGG | - | chr5_2:29114779-29114798 | Msa0766810:intron | 35.0% | |
| ! | ATGGTAGAGTCTTGTCTTAA+AGG | - | chr5_2:29114823-29114842 | Msa0766810:intron | 35.0% |
| ! | TGGTAGAGTCTTGTCTTAAA+GGG | - | chr5_2:29114824-29114843 | Msa0766810:intron | 35.0% |
| ATTGTCCTTCATGGTTCATA+TGG | + | chr5_2:29114939-29114958 | None:intergenic | 35.0% | |
| AATTCAATAACTAGCGGTAG+AGG | - | chr5_2:29114956-29114975 | Msa0766810:intron | 35.0% | |
| !! | TATTGGTCTTGATTTGTGGT+TGG | - | chr5_2:29115038-29115057 | Msa0766810:intron | 35.0% |
| AGAGAAGGAATTATCTTGTG+TGG | + | chr5_2:29115202-29115221 | None:intergenic | 35.0% | |
| AAGATAATTCCTTCTCTGCA+TGG | - | chr5_2:29115205-29115224 | Msa0766810:intron | 35.0% | |
| TTTGACTACTTCTCAAGCTT+TGG | - | chr5_2:29115308-29115327 | Msa0766810:intron | 35.0% | |
| TTGACTACTTCTCAAGCTTT+GGG | - | chr5_2:29115309-29115328 | Msa0766810:intron | 35.0% | |
| AAAATTGCAACTCAAAGCTC+TGG | - | chr5_2:29115395-29115414 | Msa0766810:intron | 35.0% | |
| !!! | GTTGGTTTTAGGCAAATGAA+AGG | - | chr5_2:29115587-29115606 | Msa0766810:intron | 35.0% |
| ! | GGCAAATGAAAGGTATATCA+AGG | - | chr5_2:29115597-29115616 | Msa0766810:intron | 35.0% |
| TACAGGGACGTAATAAAACA+TGG | + | chr5_2:29115623-29115642 | None:intergenic | 35.0% | |
| ! | TTTAAGGTTACTGTAGGCAT+TGG | - | chr5_2:29115792-29115811 | Msa0766810:intron | 35.0% |
| CTTAATTGTGTACCATTGCA+AGG | + | chr5_2:29115876-29115895 | None:intergenic | 35.0% | |
| AGTTCAATTCCTTATGCAGA+AGG | - | chr5_2:29115903-29115922 | Msa0766810:intron | 35.0% | |
| CTTAATAGCAACATGTTCCA+AGG | + | chr5_2:29115966-29115985 | None:intergenic | 35.0% | |
| TAACCCCAAAAACTAGCTAA+AGG | + | chr5_2:29116008-29116027 | None:intergenic | 35.0% | |
| AAGCTTAGAAATCCATCTTG+TGG | + | chr5_2:29116085-29116104 | None:intergenic | 35.0% | |
| ATGGATTTCTAAGCTTCACA+AGG | - | chr5_2:29116089-29116108 | Msa0766810:intron | 35.0% | |
| !!! | GTTTTTAGGATGTAGTCAAC+TGG | + | chr5_2:29116295-29116314 | None:intergenic | 35.0% |
| ! | CTTTGAAAAAGTTCTCAAGG+TGG | + | chr5_2:29116351-29116370 | None:intergenic | 35.0% |
| TAAATATCCCACGTAGTATC+GGG | + | chr5_2:29116403-29116422 | None:intergenic | 35.0% | |
| ! | TCTAAGTCTGATTTTCTTGC+AGG | - | chr5_2:29116484-29116503 | Msa0766810:intron | 35.0% |
| TCCCTCTTCCCAAAAAAATT+AGG | - | chr5_2:29116621-29116640 | Msa0766810:intron | 35.0% | |
| !!! | CACCTAATTTTTTTGGGAAG+AGG | + | chr5_2:29116626-29116645 | None:intergenic | 35.0% |
| ACAACAGGAAAAAGGGAAAA+AGG | + | chr5_2:29116665-29116684 | None:intergenic | 35.0% | |
| ! | CAAATGAGCAAGTTCTTTTG+TGG | + | chr5_2:29116691-29116710 | None:intergenic | 35.0% |
| ! | ATGGATTAAAGACACGAGAA+AGG | - | chr5_2:29116874-29116893 | Msa0766810:intron | 35.0% |
| ! | TTATATTTGAGACCAGAGCA+TGG | + | chr5_2:29116931-29116950 | None:intergenic | 35.0% |
| TGTCATCCAAAATCAAAGGA+TGG | - | chr5_2:29117266-29117285 | Msa0766810:intron | 35.0% | |
| ATCCTTGTCTTACAACCATT+CGG | - | chr5_2:29117641-29117660 | Msa0766810:intron | 35.0% | |
| ! | CTCACATTTCTTTTGCTTCT+TGG | + | chr5_2:29117701-29117720 | None:intergenic | 35.0% |
| TGTGTGGTTATAGTTACCTT+TGG | + | chr5_2:29117907-29117926 | None:intergenic | 35.0% | |
| TTATGGGTGAAGATTTGATG+AGG | - | chr5_2:29118026-29118045 | Msa0766810:CDS | 35.0% | |
| AAGATTTGATGAGGACTTCA+AGG | - | chr5_2:29118035-29118054 | Msa0766810:CDS | 35.0% | |
| GACAAGGTTTAGGAAAAAGA+AGG | - | chr5_2:29118109-29118128 | Msa0766810:intron | 35.0% | |
| AAAAAGAAGGCTTGAAGAGA+AGG | - | chr5_2:29118122-29118141 | Msa0766810:intron | 35.0% | |
| CATGTACCTAACAAAACTCT+AGG | - | chr5_2:29118229-29118248 | Msa0766810:CDS | 35.0% | |
| !!! | TCATACCCTAGAGTTTTGTT+AGG | + | chr5_2:29118238-29118257 | None:intergenic | 35.0% |
| TGAAACAATGTGGTTCTTCG+CGG | + | chr5_2:29113666-29113685 | None:intergenic | 40.0% | |
| TGTCCCAAGATGAAATGAGA+AGG | + | chr5_2:29113826-29113845 | None:intergenic | 40.0% | |
| AGAAGCAACAGAGAAAGCAA+CGG | + | chr5_2:29114033-29114052 | None:intergenic | 40.0% | |
| !! | CTTCTGATGGATTCATTCGA+AGG | - | chr5_2:29114048-29114067 | Msa0766810:three_prime_UTR | 40.0% |
| ! | TGGGCAATTTTCGTTGAAAG+GGG | - | chr5_2:29114170-29114189 | Msa0766810:CDS | 40.0% |
| TGATTCAAAATCCAACCCTG+CGG | - | chr5_2:29114280-29114299 | Msa0766810:intron | 40.0% | |
| ! | ACTCCATCTTGTTGAGTTGT+TGG | - | chr5_2:29114427-29114446 | Msa0766810:intron | 40.0% |
| CAACCAACAACTCAACAAGA+TGG | + | chr5_2:29114433-29114452 | None:intergenic | 40.0% | |
| CTACCACTTATAGACCAACA+TGG | + | chr5_2:29114479-29114498 | None:intergenic | 40.0% | |
| AAGTGGTAGCCTTCAAAATC+AGG | - | chr5_2:29114490-29114509 | Msa0766810:intron | 40.0% | |
| AGCCTTCAAAATCAGGCATT+TGG | - | chr5_2:29114497-29114516 | Msa0766810:intron | 40.0% | |
| ! | AGCCAAATGCCTGATTTTGA+AGG | + | chr5_2:29114502-29114521 | None:intergenic | 40.0% |
| !! | TTCTGGAATTGTTGACCCAA+TGG | - | chr5_2:29114618-29114637 | Msa0766810:intron | 40.0% |
| ! | TCTGGAATTGTTGACCCAAT+GGG | - | chr5_2:29114619-29114638 | Msa0766810:intron | 40.0% |
| TGTCATCATGACTACCCATT+GGG | + | chr5_2:29114636-29114655 | None:intergenic | 40.0% | |
| ATGTCATCATGACTACCCAT+TGG | + | chr5_2:29114637-29114656 | None:intergenic | 40.0% | |
| AATGGGTAGTCATGATGACA+TGG | - | chr5_2:29114636-29114655 | Msa0766810:intron | 40.0% | |
| GATGACATGGCAACATGTAT+TGG | - | chr5_2:29114649-29114668 | Msa0766810:intron | 40.0% | |
| GTGTCCATTCATCCAACAAA+TGG | + | chr5_2:29114734-29114753 | None:intergenic | 40.0% | |
| ! | GGTAGAGTCTTGTCTTAAAG+GGG | - | chr5_2:29114825-29114844 | Msa0766810:intron | 40.0% |
| ! | AGTCTTGTCTTAAAGGGGTT+TGG | - | chr5_2:29114830-29114849 | Msa0766810:intron | 40.0% |
| GTCTTGTCTTAAAGGGGTTT+GGG | - | chr5_2:29114831-29114850 | Msa0766810:intron | 40.0% | |
| GTAGACCATATGAACCATGA+AGG | - | chr5_2:29114931-29114950 | Msa0766810:intron | 40.0% | |
| !! | GTCTTGATTTGTGGTTGGAT+AGG | - | chr5_2:29115043-29115062 | Msa0766810:intron | 40.0% |
| CTTGTGTGGATAAGAGTAGT+AGG | + | chr5_2:29115188-29115207 | None:intergenic | 40.0% | |
| GCAGGTCTGTTAATTACTTC+TGG | - | chr5_2:29115669-29115688 | Msa0766810:intron | 40.0% | |
| TGGTACATACCTTCTGCATA+AGG | + | chr5_2:29115915-29115934 | None:intergenic | 40.0% | |
| AAAACTAGCTAAAGGAGGGA+GGG | + | chr5_2:29116000-29116019 | None:intergenic | 40.0% | |
| AAAAACTAGCTAAAGGAGGG+AGG | + | chr5_2:29116001-29116020 | None:intergenic | 40.0% | |
| !!! | TCCCTCCTTTAGCTAGTTTT+TGG | - | chr5_2:29116000-29116019 | Msa0766810:intron | 40.0% |
| CCCAAAAACTAGCTAAAGGA+GGG | + | chr5_2:29116004-29116023 | None:intergenic | 40.0% | |
| !!! | CCCTCCTTTAGCTAGTTTTT+GGG | - | chr5_2:29116001-29116020 | Msa0766810:intron | 40.0% |
| !!! | CCTCCTTTAGCTAGTTTTTG+GGG | - | chr5_2:29116002-29116021 | Msa0766810:intron | 40.0% |
| TAAAACGCTCTTGCATTTGG+AGG | - | chr5_2:29116176-29116195 | Msa0766810:CDS | 40.0% | |
| TTTCTTGCAGGATTTGCAGT+TGG | - | chr5_2:29116496-29116515 | Msa0766810:intron | 40.0% | |
| AGGAAAAAGGGAAAAAGGAG+AGG | + | chr5_2:29116660-29116679 | None:intergenic | 40.0% | |
| ACAAAACCCTTGAGTCAACA+AGG | + | chr5_2:29116728-29116747 | None:intergenic | 40.0% | |
| ACTCTGACAGATATACGTTC+CGG | - | chr5_2:29117243-29117262 | Msa0766810:intron | 40.0% | |
| !! | CCTTTGATTTTGGATGACAC+CGG | + | chr5_2:29117265-29117284 | None:intergenic | 40.0% |
| !! | TGCTGACCATCCTTTGATTT+TGG | + | chr5_2:29117275-29117294 | None:intergenic | 40.0% |
| AAAGGATGGTCAGCATCATT+TGG | - | chr5_2:29117280-29117299 | Msa0766810:intron | 40.0% | |
| ! | TTTGTCACTGGTGATAACGA+AGG | - | chr5_2:29117430-29117449 | Msa0766810:intron | 40.0% |
| ACGAAGGTTATGCTACCATA+TGG | - | chr5_2:29117446-29117465 | Msa0766810:intron | 40.0% | |
| CGAAGGTTATGCTACCATAT+GGG | - | chr5_2:29117447-29117466 | Msa0766810:intron | 40.0% | |
| CTTCTCAATTTCAGTTTCCC+AGG | - | chr5_2:29117601-29117620 | Msa0766810:intron | 40.0% | |
| GCAACACTATTTGAGTACCT+GGG | + | chr5_2:29117621-29117640 | None:intergenic | 40.0% | |
| TGCAACACTATTTGAGTACC+TGG | + | chr5_2:29117622-29117641 | None:intergenic | 40.0% | |
| TCCTTGTCTTACAACCATTC+GGG | - | chr5_2:29117642-29117661 | Msa0766810:intron | 40.0% | |
| TCGAAGGAAAACCTAAGCAT+TGG | - | chr5_2:29117870-29117889 | Msa0766810:intron | 40.0% | |
| CAAGCATATCACCAATGCTT+AGG | + | chr5_2:29117884-29117903 | None:intergenic | 40.0% | |
| ! | ATTGGTGATATGCTTGCCAA+AGG | - | chr5_2:29117888-29117907 | Msa0766810:intron | 40.0% |
| GGTAACTATAACCACACAAC+TGG | - | chr5_2:29117909-29117928 | Msa0766810:intron | 40.0% | |
| GCAAAGATTAACCAGTTGTG+TGG | + | chr5_2:29117923-29117942 | None:intergenic | 40.0% | |
| !! | GACTTCAAGGAAGCATCTAA+AGG | - | chr5_2:29118048-29118067 | Msa0766810:CDS | 40.0% |
| AAGGACCTTTGACAAGGTTT+AGG | - | chr5_2:29118099-29118118 | Msa0766810:intron | 40.0% | |
| CCAATTAATAGGCACACACA+TGG | + | chr5_2:29118324-29118343 | None:intergenic | 40.0% | |
| CCATGTGTGTGCCTATTAAT+TGG | - | chr5_2:29118321-29118340 | Msa0766810:five_prime_UTR | 40.0% | |
| AACCTAGTATAGCCCATTTG+AGG | - | chr5_2:29118344-29118363 | Msa0766810:five_prime_UTR | 40.0% | |
| !! | TTCCTCAAATGGGCTATACT+AGG | + | chr5_2:29118349-29118368 | None:intergenic | 40.0% |
| CTGGAAATTGCGTCACTGAT+TGG | + | chr5_2:29113776-29113795 | None:intergenic | 45.0% | |
| ATACGATTTCGACGCTTCTG+TGG | - | chr5_2:29113947-29113966 | Msa0766810:three_prime_UTR | 45.0% | |
| ! | GCTTTCTCTGTTGCTTCTGA+TGG | - | chr5_2:29114035-29114054 | Msa0766810:three_prime_UTR | 45.0% |
| TAATGTGTACAACCTCCGCA+GGG | + | chr5_2:29114298-29114317 | None:intergenic | 45.0% | |
| ATAATGTGTACAACCTCCGC+AGG | + | chr5_2:29114299-29114318 | None:intergenic | 45.0% | |
| ATGCACCGTCAGTGTAAAAC+TGG | + | chr5_2:29114388-29114407 | None:intergenic | 45.0% | |
| AGAGAAGGCTTGTGTAGAAG+CGG | - | chr5_2:29114860-29114879 | Msa0766810:intron | 45.0% | |
| AGGAAAGATAGGAAGAGCAG+AGG | + | chr5_2:29115168-29115187 | None:intergenic | 45.0% | |
| TGGAAGAAACCATGCAGAGA+AGG | + | chr5_2:29115217-29115236 | None:intergenic | 45.0% | |
| ! | GATTGACTCCATGTCTGTCT+CGG | - | chr5_2:29115767-29115786 | Msa0766810:intron | 45.0% |
| ! | ATTGACTCCATGTCTGTCTC+GGG | - | chr5_2:29115768-29115787 | Msa0766810:intron | 45.0% |
| ! | TCGGGGTTTAAGGTTACTGT+AGG | - | chr5_2:29115786-29115805 | Msa0766810:intron | 45.0% |
| CGACAAACCAAACCTGTCAA+TGG | - | chr5_2:29115848-29115867 | Msa0766810:intron | 45.0% | |
| AAACTAGCTAAAGGAGGGAG+GGG | + | chr5_2:29115999-29116018 | None:intergenic | 45.0% | |
| CCCCAAAAACTAGCTAAAGG+AGG | + | chr5_2:29116005-29116024 | None:intergenic | 45.0% | |
| CCATCTTGTGGCCCAATATT+AGG | + | chr5_2:29116073-29116092 | None:intergenic | 45.0% | |
| CCTAATATTGGGCCACAAGA+TGG | - | chr5_2:29116070-29116089 | Msa0766810:intron | 45.0% | |
| TAGAAGAATAGGGGTAGCAG+CGG | + | chr5_2:29116127-29116146 | None:intergenic | 45.0% | |
| ACACCAAGAAGTCTGAGTTC+AGG | - | chr5_2:29116448-29116467 | Msa0766810:intron | 45.0% | |
| CACCAAGAAGTCTGAGTTCA+GGG | - | chr5_2:29116449-29116468 | Msa0766810:intron | 45.0% | |
| ATCCCTGAACTCAGACTTCT+TGG | + | chr5_2:29116454-29116473 | None:intergenic | 45.0% | |
| AAGTCTGAGTTCAGGGATTC+TGG | - | chr5_2:29116456-29116475 | Msa0766810:intron | 45.0% | |
| AGGATTTGCAGTTGGATCAG+TGG | - | chr5_2:29116504-29116523 | Msa0766810:intron | 45.0% | |
| TTTGCAGTTGGATCAGTGGA+TGG | - | chr5_2:29116508-29116527 | Msa0766810:intron | 45.0% | |
| !!! | TTTTTTGGGAAGAGGGAGAG+AGG | + | chr5_2:29116618-29116637 | None:intergenic | 45.0% |
| GTGGGCAACAACAGGAAAAA+GGG | + | chr5_2:29116672-29116691 | None:intergenic | 45.0% | |
| TGTGGGCAACAACAGGAAAA+AGG | + | chr5_2:29116673-29116692 | None:intergenic | 45.0% | |
| ! | GTTCTTTTGTGGGCAACAAC+AGG | + | chr5_2:29116680-29116699 | None:intergenic | 45.0% |
| ! | TGCTCATTTGCTGAACGTCA+AGG | - | chr5_2:29116701-29116720 | Msa0766810:intron | 45.0% |
| !! | TCAAGGACCTTGTTGACTCA+AGG | - | chr5_2:29116718-29116737 | Msa0766810:intron | 45.0% |
| !! | CAAGGACCTTGTTGACTCAA+GGG | - | chr5_2:29116719-29116738 | Msa0766810:intron | 45.0% |
| CCATGCTTTGTGTGTGCAAT+AGG | + | chr5_2:29116833-29116852 | None:intergenic | 45.0% | |
| CCTATTGCACACACAAAGCA+TGG | - | chr5_2:29116830-29116849 | Msa0766810:intron | 45.0% | |
| GTGACCTATAAACCATGCTC+TGG | - | chr5_2:29116916-29116935 | Msa0766810:intron | 45.0% | |
| GAGACCAGAGCATGGTTTAT+AGG | + | chr5_2:29116923-29116942 | None:intergenic | 45.0% | |
| !! | CCGGTGTCATCCAAAATCAA+AGG | - | chr5_2:29117262-29117281 | Msa0766810:intron | 45.0% |
| ATGTCTGGTGCATTTGTCAC+TGG | - | chr5_2:29117418-29117437 | Msa0766810:intron | 45.0% | |
| CCTACTTCTAGCATCCCATA+TGG | + | chr5_2:29117464-29117483 | None:intergenic | 45.0% | |
| CCATATGGGATGCTAGAAGT+AGG | - | chr5_2:29117461-29117480 | Msa0766810:intron | 45.0% | |
| TCCCGAATGGTTGTAAGACA+AGG | + | chr5_2:29117646-29117665 | None:intergenic | 45.0% | |
| GATTGGAAGGACCTTTGACA+AGG | - | chr5_2:29118093-29118112 | Msa0766810:intron | 45.0% | |
| !! | ATATAAAAATAAAAATTGTT+TGG | - | chr5_2:29115562-29115581 | Msa0766810:intron | 5.0% |
| !! | TTATTATAAATTATAAAACT+TGG | - | chr5_2:29117367-29117386 | Msa0766810:CDS | 5.0% |
| TTCAAAATCCAACCCTGCGG+AGG | - | chr5_2:29114283-29114302 | Msa0766810:intron | 50.0% | |
| ! | GGGTTTGGGATGTGTAGAGA+AGG | - | chr5_2:29114845-29114864 | Msa0766810:intron | 50.0% |
| GAGAAGGCTTGTGTAGAAGC+GGG | - | chr5_2:29114861-29114880 | Msa0766810:intron | 50.0% | |
| AGAAGGCTTGTGTAGAAGCG+GGG | - | chr5_2:29114862-29114881 | Msa0766810:intron | 50.0% | |
| CTTGTGTAGAAGCGGGGTTT+GGG | - | chr5_2:29114868-29114887 | Msa0766810:intron | 50.0% | |
| ! | GGGTTTGGGATGTGTAGAGA+AGG | - | chr5_2:29114845-29114864 | Msa0766810:intron | 50.0% |
| TAGGAGTCAACTCCTGCTAG+TGG | - | chr5_2:29115062-29115081 | Msa0766810:intron | 50.0% | |
| AGGAGTCAACTCCTGCTAGT+GGG | - | chr5_2:29115063-29115082 | Msa0766810:intron | 50.0% | |
| ! | CCAAAGCATTTCCCACTAGC+AGG | + | chr5_2:29115077-29115096 | None:intergenic | 50.0% |
| CCTGCTAGTGGGAAATGCTT+TGG | - | chr5_2:29115074-29115093 | Msa0766810:intron | 50.0% | |
| TTGACTCCATGTCTGTCTCG+GGG | - | chr5_2:29115769-29115788 | Msa0766810:intron | 50.0% | |
| CTTAAACCCCGAGACAGACA+TGG | + | chr5_2:29115778-29115797 | None:intergenic | 50.0% | |
| CATGTCTGTCTCGGGGTTTA+AGG | - | chr5_2:29115776-29115795 | Msa0766810:intron | 50.0% | |
| CAAGGCTCCATTGACAGGTT+TGG | + | chr5_2:29115858-29115877 | None:intergenic | 50.0% | |
| CATTGCAAGGCTCCATTGAC+AGG | + | chr5_2:29115863-29115882 | None:intergenic | 50.0% | |
| CTGTCAATGGAGCCTTGCAA+TGG | - | chr5_2:29115861-29115880 | Msa0766810:intron | 50.0% | |
| AACTAGCTAAAGGAGGGAGG+GGG | + | chr5_2:29115998-29116017 | None:intergenic | 50.0% | |
| TTGGGTTTCCCGATACTACG+TGG | - | chr5_2:29116392-29116411 | Msa0766810:intron | 50.0% | |
| TGGGTTTCCCGATACTACGT+GGG | - | chr5_2:29116393-29116412 | Msa0766810:intron | 50.0% | |
| CAGTTGGATCAGTGGATGGA+CGG | - | chr5_2:29116512-29116531 | Msa0766810:intron | 50.0% | |
| AGTTGGATCAGTGGATGGAC+GGG | - | chr5_2:29116513-29116532 | Msa0766810:intron | 50.0% | |
| TGAGGAGGCTCTACTCTGTA+AGG | + | chr5_2:29117802-29117821 | None:intergenic | 50.0% | |
| TCGGATCAAGTTCTGCTCGA+AGG | - | chr5_2:29117854-29117873 | Msa0766810:intron | 50.0% | |
| GCTTGTGTAGAAGCGGGGTT+TGG | - | chr5_2:29114867-29114886 | Msa0766810:intron | 55.0% | |
| CAGCTAGAAGCTGTCCCGAA+TGG | + | chr5_2:29117659-29117678 | None:intergenic | 55.0% | |
| GTGTACAACCTCCGCAGGGT+TGG | + | chr5_2:29114294-29114313 | None:intergenic | 60.0% | |
| !! | GGATGGACGGGTTGCGTTGC+AGG | - | chr5_2:29116525-29116544 | Msa0766810:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 29113647 | 29118372 | 29113647 | ID=Msa0766810;Name=Msa0766810 |
| chr5_2 | mRNA | 29113647 | 29118372 | 29113647 | ID=Msa0766810-mRNA-1;Parent=Msa0766810;Name=Msa0766810-mRNA-1;_AED=0.03;_eAED=0.03;_QI=81|1|0.77|1|1|1|9|487|334 |
| chr5_2 | exon | 29113647 | 29114212 | 29113647 | ID=Msa0766810-mRNA-1:exon:11150;Parent=Msa0766810-mRNA-1 |
| chr5_2 | exon | 29114304 | 29114404 | 29114304 | ID=Msa0766810-mRNA-1:exon:11149;Parent=Msa0766810-mRNA-1 |
| chr5_2 | exon | 29114521 | 29114602 | 29114521 | ID=Msa0766810-mRNA-1:exon:11148;Parent=Msa0766810-mRNA-1 |
| chr5_2 | exon | 29114686 | 29114766 | 29114686 | ID=Msa0766810-mRNA-1:exon:11147;Parent=Msa0766810-mRNA-1 |
| chr5_2 | exon | 29115441 | 29115513 | 29115441 | ID=Msa0766810-mRNA-1:exon:11146;Parent=Msa0766810-mRNA-1 |
| chr5_2 | exon | 29116095 | 29116346 | 29116095 | ID=Msa0766810-mRNA-1:exon:11145;Parent=Msa0766810-mRNA-1 |
| chr5_2 | exon | 29117331 | 29117413 | 29117331 | ID=Msa0766810-mRNA-1:exon:11144;Parent=Msa0766810-mRNA-1 |
| chr5_2 | exon | 29117950 | 29118083 | 29117950 | ID=Msa0766810-mRNA-1:exon:11143;Parent=Msa0766810-mRNA-1 |
| chr5_2 | exon | 29118172 | 29118372 | 29118172 | ID=Msa0766810-mRNA-1:exon:11142;Parent=Msa0766810-mRNA-1 |
| chr5_2 | five_prime_UTR | 29118292 | 29118372 | 29118292 | ID=Msa0766810-mRNA-1:five_prime_utr;Parent=Msa0766810-mRNA-1 |
| chr5_2 | CDS | 29118172 | 29118291 | 29118172 | ID=Msa0766810-mRNA-1:cds;Parent=Msa0766810-mRNA-1 |
| chr5_2 | CDS | 29117950 | 29118083 | 29117950 | ID=Msa0766810-mRNA-1:cds;Parent=Msa0766810-mRNA-1 |
| chr5_2 | CDS | 29117331 | 29117413 | 29117331 | ID=Msa0766810-mRNA-1:cds;Parent=Msa0766810-mRNA-1 |
| chr5_2 | CDS | 29116095 | 29116346 | 29116095 | ID=Msa0766810-mRNA-1:cds;Parent=Msa0766810-mRNA-1 |
| chr5_2 | CDS | 29115441 | 29115513 | 29115441 | ID=Msa0766810-mRNA-1:cds;Parent=Msa0766810-mRNA-1 |
| chr5_2 | CDS | 29114686 | 29114766 | 29114686 | ID=Msa0766810-mRNA-1:cds;Parent=Msa0766810-mRNA-1 |
| chr5_2 | CDS | 29114521 | 29114602 | 29114521 | ID=Msa0766810-mRNA-1:cds;Parent=Msa0766810-mRNA-1 |
| chr5_2 | CDS | 29114304 | 29114404 | 29114304 | ID=Msa0766810-mRNA-1:cds;Parent=Msa0766810-mRNA-1 |
| chr5_2 | CDS | 29114134 | 29114212 | 29114134 | ID=Msa0766810-mRNA-1:cds;Parent=Msa0766810-mRNA-1 |
| chr5_2 | three_prime_UTR | 29113647 | 29114133 | 29113647 | ID=Msa0766810-mRNA-1:three_prime_utr;Parent=Msa0766810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
