Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0919790 | XP_013452470.1 | 95.046 | 545 | 9 | 4 | 1 | 540 | 1 | 532 | 0.0 | 1046 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0919790 | sp|Q8GYY0|1A112_ARATH | 59.259 | 513 | 187 | 4 | 30 | 538 | 1 | 495 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032040 | Msa0919790 | 0.801709 | 7.924191e-49 | -8.615850e-47 |
| Msa0036990 | Msa0919790 | 0.804107 | 2.532023e-49 | -8.615850e-47 |
| Msa0053480 | Msa0919790 | 0.810918 | 9.077727e-51 | -8.615850e-47 |
| Msa0087130 | Msa0919790 | 0.801727 | 7.853771e-49 | -8.615850e-47 |
| Msa0090350 | Msa0919790 | 0.812189 | 4.806006e-51 | -8.615850e-47 |
| Msa0118250 | Msa0919790 | 0.821566 | 3.771428e-53 | -8.615850e-47 |
| Msa0608940 | Msa0919790 | 0.800867 | 1.178077e-48 | -8.615850e-47 |
| Msa0619460 | Msa0919790 | 0.812272 | 4.609406e-51 | -8.615850e-47 |
| Msa0619520 | Msa0919790 | 0.807881 | 4.069690e-50 | -8.615850e-47 |
| Msa0626890 | Msa0919790 | 0.804911 | 1.720602e-49 | -8.615850e-47 |
| Msa0648410 | Msa0919790 | 0.812970 | 3.242506e-51 | -8.615850e-47 |
| Msa0658280 | Msa0919790 | 0.833481 | 5.202549e-56 | -8.615850e-47 |
| Msa0659590 | Msa0919790 | 0.805231 | 1.474875e-49 | -8.615850e-47 |
| Msa0665010 | Msa0919790 | 0.826738 | 2.300987e-54 | -8.615850e-47 |
| Msa0690920 | Msa0919790 | 0.818106 | 2.329883e-52 | -8.615850e-47 |
| Msa0714060 | Msa0919790 | 0.804648 | 1.952791e-49 | -8.615850e-47 |
| Msa0714200 | Msa0919790 | 0.802143 | 6.451088e-49 | -8.615850e-47 |
| Msa0756440 | Msa0919790 | 0.809522 | 1.814983e-50 | -8.615850e-47 |
| Msa0795930 | Msa0919790 | 0.812518 | 4.071209e-51 | -8.615850e-47 |
| Msa0829430 | Msa0919790 | 0.807556 | 4.770881e-50 | -8.615850e-47 |
| Msa0835550 | Msa0919790 | 0.811458 | 6.931116e-51 | -8.615850e-47 |
| Msa0128070 | Msa0919790 | 0.800565 | 1.357835e-48 | -8.615850e-47 |
| Msa0135400 | Msa0919790 | 0.813395 | 2.615783e-51 | -8.615850e-47 |
| Msa0136580 | Msa0919790 | 0.801384 | 9.237799e-49 | -8.615850e-47 |
| Msa0143360 | Msa0919790 | 0.839565 | 1.468301e-57 | -8.615850e-47 |
| Msa0155500 | Msa0919790 | 0.825446 | 4.668191e-54 | -8.615850e-47 |
| Msa0184030 | Msa0919790 | 0.811796 | 5.853448e-51 | -8.615850e-47 |
| Msa0194750 | Msa0919790 | 0.805840 | 1.099381e-49 | -8.615850e-47 |
| Msa0208710 | Msa0919790 | 0.824307 | 8.664829e-54 | -8.615850e-47 |
| Msa0226580 | Msa0919790 | 0.809708 | 1.655742e-50 | -8.615850e-47 |
| Msa0376480 | Msa0919790 | 0.808904 | 2.462740e-50 | -8.615850e-47 |
| Msa0387120 | Msa0919790 | 0.832016 | 1.202356e-55 | -8.615850e-47 |
| Msa0390350 | Msa0919790 | 0.805501 | 1.294998e-49 | -8.615850e-47 |
| Msa0400900 | Msa0919790 | 0.801054 | 1.079167e-48 | -8.615850e-47 |
| Msa0449220 | Msa0919790 | 0.817837 | 2.680297e-52 | -8.615850e-47 |
| Msa0269660 | Msa0919790 | 0.813346 | 2.681591e-51 | -8.615850e-47 |
| Msa0314980 | Msa0919790 | 0.800861 | 1.181315e-48 | -8.615850e-47 |
| Msa0330770 | Msa0919790 | 0.802934 | 4.432591e-49 | -8.615850e-47 |
| Msa0483090 | Msa0919790 | 0.806007 | 1.013750e-49 | -8.615850e-47 |
| Msa0516480 | Msa0919790 | 0.815292 | 9.963072e-52 | -8.615850e-47 |
| Msa0538100 | Msa0919790 | 0.812410 | 4.299250e-51 | -8.615850e-47 |
| Msa0555510 | Msa0919790 | 0.812260 | 4.635740e-51 | -8.615850e-47 |
| Msa0573970 | Msa0919790 | 0.814265 | 1.682099e-51 | -8.615850e-47 |
| Msa0580430 | Msa0919790 | 0.803602 | 3.224158e-49 | -8.615850e-47 |
| Msa0585770 | Msa0919790 | 0.811857 | 5.675148e-51 | -8.615850e-47 |
| Msa0587060 | Msa0919790 | 0.830769 | 2.436475e-55 | -8.615850e-47 |
| Msa0597300 | Msa0919790 | 0.808671 | 2.761508e-50 | -8.615850e-47 |
| Msa0868040 | Msa0919790 | 0.801035 | 1.088806e-48 | -8.615850e-47 |
| Msa0880310 | Msa0919790 | 0.801877 | 7.316583e-49 | -8.615850e-47 |
| Msa0887000 | Msa0919790 | 0.802233 | 6.181695e-49 | -8.615850e-47 |
| Msa0917630 | Msa0919790 | 0.817671 | 2.921788e-52 | -8.615850e-47 |
| Msa0919790 | Msa0958220 | 0.803260 | 3.794434e-49 | -8.615850e-47 |
| Msa0919790 | Msa0967260 | 0.803856 | 2.855497e-49 | -8.615850e-47 |
| Msa0919790 | Msa0967670 | 0.812301 | 4.542779e-51 | -8.615850e-47 |
| Msa0919790 | Msa1015020 | 0.802271 | 6.071567e-49 | -8.615850e-47 |
| Msa0919790 | Msa1042380 | 0.838989 | 2.072378e-57 | -8.615850e-47 |
| Msa0919790 | Msa1117280 | 0.800057 | 1.723046e-48 | -8.615850e-47 |
| Msa0919790 | Msa1125100 | 0.837456 | 5.143716e-57 | -8.615850e-47 |
| Msa0919790 | Msa1125150 | 0.835687 | 1.451350e-56 | -8.615850e-47 |
| Msa0919790 | Msa1151970 | 0.800872 | 1.175636e-48 | -8.615850e-47 |
| Msa0919790 | Msa1182400 | 0.814779 | 1.294672e-51 | -8.615850e-47 |
| Msa0919790 | Msa1186010 | 0.825068 | 5.734628e-54 | -8.615850e-47 |
| Msa0919790 | Msa1204390 | 0.816214 | 6.207084e-52 | -8.615850e-47 |
| Msa0919790 | Msa1230190 | 0.818647 | 1.757486e-52 | -8.615850e-47 |
| Msa0919790 | Msa1240240 | 0.806449 | 8.181315e-50 | -8.615850e-47 |
| Msa0919790 | Msa1251960 | 0.806837 | 6.775226e-50 | -8.615850e-47 |
| Msa0919790 | Msa1272770 | 0.833939 | 3.996844e-56 | -8.615850e-47 |
| Msa0919790 | Msa1296610 | 0.841908 | 3.571927e-58 | -8.615850e-47 |
| Msa0919790 | Msa1320660 | 0.812294 | 4.557181e-51 | -8.615850e-47 |
| Msa0919790 | Msa1329020 | 0.812661 | 3.789655e-51 | -8.615850e-47 |
| Msa0919790 | Msa1339310 | 0.805896 | 1.069637e-49 | -8.615850e-47 |
| Msa0919790 | Msa1346220 | 0.825316 | 5.010164e-54 | -8.615850e-47 |
| Msa0919790 | Msa1346340 | 0.831056 | 2.071681e-55 | -8.615850e-47 |
| Msa0919790 | Msa1346920 | 0.818051 | 2.397796e-52 | -8.615850e-47 |
| Msa0919790 | Msa1348770 | 0.820488 | 6.678993e-53 | -8.615850e-47 |
| Msa0919790 | Msa1349490 | 0.800078 | 1.706367e-48 | -8.615850e-47 |
| Msa0919790 | Msa1349640 | 0.808289 | 3.332529e-50 | -8.615850e-47 |
| Msa0919790 | Msa1363560 | 0.822209 | 2.677604e-53 | -8.615850e-47 |
| Msa0919790 | Msa1381720 | 0.803191 | 3.921796e-49 | -8.615850e-47 |
| Msa0919790 | Msa1382100 | 0.811668 | 6.238610e-51 | -8.615850e-47 |
| Msa0919790 | Msa1388270 | 0.804489 | 2.107456e-49 | -8.615850e-47 |
| Msa0919790 | Msa1392570 | 0.801078 | 1.067078e-48 | -8.615850e-47 |
| Msa0919790 | Msa1413360 | 0.809066 | 2.273642e-50 | -8.615850e-47 |
| Msa0919790 | Msa1418780 | 0.817454 | 3.269810e-52 | -8.615850e-47 |
| Msa0919790 | Msa1432250 | 0.815687 | 8.135427e-52 | -8.615850e-47 |
| Msa0919790 | Msa1438780 | 0.800152 | 1.648021e-48 | -8.615850e-47 |
| Msa0919790 | Msa1450850 | 0.824594 | 7.416449e-54 | -8.615850e-47 |
| Msa0919790 | Msa1451780 | 0.811442 | 6.985661e-51 | -8.615850e-47 |
| Msa0919790 | Msa1459630 | 0.801947 | 7.080595e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0919790 | MtrunA17_Chr6g0475681 | 95.046 | 545 | 9 | 4 | 1 | 540 | 1 | 532 | 0.0 | 1046 |
| Msa0919790 | MtrunA17_Chr5g0398431 | 52.456 | 509 | 224 | 5 | 30 | 535 | 1 | 494 | 0.0 | 542 |
| Msa0919790 | MtrunA17_Chr4g0054371 | 44.419 | 439 | 218 | 7 | 116 | 540 | 16 | 442 | 3.35e-138 | 408 |
| Msa0919790 | MtrunA17_Chr6g0488041 | 43.349 | 436 | 230 | 4 | 102 | 533 | 12 | 434 | 7.14e-137 | 404 |
| Msa0919790 | MtrunA17_Chr8g0389311 | 43.218 | 435 | 224 | 5 | 100 | 530 | 8 | 423 | 1.32e-133 | 395 |
| Msa0919790 | MtrunA17_Chr8g0389321 | 43.218 | 435 | 224 | 5 | 100 | 530 | 8 | 423 | 1.32e-133 | 395 |
| Msa0919790 | MtrunA17_Chr3g0135251 | 43.864 | 440 | 227 | 4 | 104 | 535 | 2 | 429 | 4.81e-133 | 395 |
| Msa0919790 | MtrunA17_Chr5g0400831 | 43.023 | 430 | 221 | 7 | 116 | 533 | 16 | 433 | 3.31e-132 | 393 |
| Msa0919790 | MtrunA17_Chr8g0387481 | 40.596 | 436 | 241 | 4 | 104 | 533 | 12 | 435 | 8.17e-127 | 379 |
| Msa0919790 | MtrunA17_Chr8g0348351 | 40.271 | 442 | 249 | 3 | 95 | 533 | 2 | 431 | 3.50e-123 | 370 |
| Msa0919790 | MtrunA17_Chr7g0248681 | 40.092 | 434 | 244 | 4 | 104 | 533 | 11 | 432 | 6.55e-120 | 362 |
| Msa0919790 | MtrunA17_Chr5g0412871 | 24.352 | 386 | 239 | 13 | 184 | 531 | 93 | 463 | 1.47e-20 | 94.7 |
| Msa0919790 | MtrunA17_Chr8g0345201 | 21.053 | 418 | 280 | 17 | 143 | 529 | 113 | 511 | 4.20e-13 | 71.6 |
| Msa0919790 | MtrunA17_Chr2g0324801 | 28.365 | 208 | 118 | 6 | 194 | 391 | 46 | 232 | 1.38e-11 | 66.2 |
| Msa0919790 | MtrunA17_Chr7g0267911 | 20.811 | 370 | 262 | 12 | 177 | 533 | 113 | 464 | 1.82e-11 | 66.6 |
| Msa0919790 | MtrunA17_Chr8g0382671 | 21.429 | 336 | 240 | 10 | 177 | 501 | 115 | 437 | 4.28e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0919790 | AT5G51690.1 | 59.259 | 513 | 187 | 4 | 30 | 538 | 1 | 495 | 0.0 | 630 |
| Msa0919790 | AT1G62960.1 | 51.648 | 546 | 214 | 8 | 28 | 540 | 29 | 557 | 0.0 | 551 |
| Msa0919790 | AT5G51690.2 | 61.081 | 370 | 141 | 1 | 172 | 538 | 3 | 372 | 3.33e-173 | 494 |
| Msa0919790 | AT4G37770.1 | 45.662 | 438 | 219 | 4 | 104 | 534 | 4 | 429 | 4.66e-140 | 413 |
| Msa0919790 | AT2G22810.1 | 43.946 | 446 | 230 | 5 | 102 | 539 | 2 | 435 | 4.51e-137 | 405 |
| Msa0919790 | AT3G49700.1 | 45.622 | 434 | 217 | 4 | 112 | 538 | 12 | 433 | 1.01e-136 | 405 |
| Msa0919790 | AT5G65800.1 | 43.794 | 427 | 221 | 4 | 116 | 535 | 16 | 430 | 5.44e-132 | 392 |
| Msa0919790 | AT4G26200.1 | 42.857 | 462 | 233 | 8 | 81 | 534 | 4 | 442 | 4.17e-131 | 389 |
| Msa0919790 | AT4G08040.1 | 42.689 | 424 | 227 | 4 | 116 | 535 | 14 | 425 | 3.82e-129 | 385 |
| Msa0919790 | AT4G11280.1 | 41.531 | 431 | 236 | 4 | 104 | 530 | 15 | 433 | 1.75e-126 | 379 |
| Msa0919790 | AT1G01480.1 | 40.271 | 442 | 245 | 5 | 104 | 538 | 12 | 441 | 9.05e-122 | 367 |
| Msa0919790 | AT3G61510.1 | 38.375 | 443 | 254 | 5 | 95 | 533 | 2 | 429 | 1.18e-117 | 356 |
| Msa0919790 | AT1G01480.2 | 41.194 | 335 | 190 | 3 | 211 | 538 | 1 | 335 | 6.06e-97 | 300 |
| Msa0919790 | AT1G23310.1 | 25.199 | 377 | 247 | 14 | 184 | 531 | 93 | 463 | 3.29e-21 | 97.1 |
| Msa0919790 | AT1G70580.4 | 25.729 | 377 | 245 | 15 | 184 | 531 | 93 | 463 | 8.83e-21 | 95.9 |
| Msa0919790 | AT1G70580.2 | 25.729 | 377 | 245 | 15 | 184 | 531 | 93 | 463 | 8.83e-21 | 95.9 |
| Msa0919790 | AT1G70580.3 | 25.729 | 377 | 245 | 15 | 184 | 531 | 93 | 463 | 8.83e-21 | 95.9 |
| Msa0919790 | AT1G70580.1 | 25.729 | 377 | 245 | 15 | 184 | 531 | 93 | 463 | 8.83e-21 | 95.9 |
| Msa0919790 | AT1G23310.2 | 24.855 | 346 | 227 | 12 | 184 | 501 | 93 | 433 | 8.30e-20 | 92.4 |
| Msa0919790 | AT1G72330.1 | 22.000 | 350 | 225 | 13 | 222 | 535 | 196 | 533 | 8.15e-16 | 80.9 |
| Msa0919790 | AT1G72330.2 | 28.402 | 169 | 105 | 6 | 222 | 385 | 196 | 353 | 1.15e-15 | 79.7 |
| Msa0919790 | AT1G17290.1 | 26.396 | 197 | 127 | 7 | 194 | 385 | 173 | 356 | 4.96e-15 | 78.2 |
| Msa0919790 | AT1G72330.3 | 21.488 | 363 | 224 | 13 | 222 | 535 | 196 | 546 | 1.65e-14 | 76.6 |
| Msa0919790 | AT5G36160.1 | 27.941 | 204 | 116 | 6 | 194 | 387 | 80 | 262 | 7.06e-13 | 71.2 |
| Msa0919790 | AT2G22250.3 | 21.149 | 383 | 255 | 14 | 178 | 539 | 116 | 472 | 7.29e-12 | 68.2 |
| Msa0919790 | AT2G22250.2 | 21.149 | 383 | 255 | 14 | 178 | 539 | 116 | 472 | 7.29e-12 | 68.2 |
| Msa0919790 | AT2G22250.1 | 20.789 | 380 | 260 | 13 | 178 | 539 | 69 | 425 | 7.67e-12 | 67.8 |
Find 132 sgRNAs with CRISPR-Local
Find 365 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGGACGACGTCGTTTA+AGG | 0.204925 | 6_2:+52963410 | None:intergenic |
| GATATCAATTTGAGTATAAA+TGG | 0.236641 | 6_2:-52961653 | Msa0919790:CDS |
| AGAAGACTGAAAAGCATTTC+TGG | 0.240255 | 6_2:+52958654 | None:intergenic |
| AGAAAGGAGAACTTGAATTA+TGG | 0.243969 | 6_2:-52958176 | Msa0919790:CDS |
| AGAAAGTAGAAGAGTGATAA+AGG | 0.247026 | 6_2:+52963442 | None:intergenic |
| TTCACACAACAAAACTGTTT+TGG | 0.255365 | 6_2:-52958439 | Msa0919790:CDS |
| TCAAAAGACCTTTCGATTGC+TGG | 0.288659 | 6_2:-52958483 | Msa0919790:CDS |
| AGCACACTTGATTCCTAGTT+TGG | 0.291076 | 6_2:+52958260 | None:intergenic |
| TTGTGTGGTGTAGTTGAGTT+TGG | 0.296137 | 6_2:-52961732 | Msa0919790:intron |
| TTCCGATAAACGATTCATTC+AGG | 0.315188 | 6_2:-52958346 | Msa0919790:CDS |
| GTCGATTACCCTGGATAATA+AGG | 0.320746 | 6_2:+52959110 | None:intergenic |
| AGAATTTGACCCGTCAAATA+TGG | 0.338798 | 6_2:-52959216 | Msa0919790:CDS |
| GCACCAGTCTTATTCTATTT+CGG | 0.349862 | 6_2:+52958307 | None:intergenic |
| GCGCCTTATCAATCATTTCA+TGG | 0.351831 | 6_2:-52961626 | Msa0919790:CDS |
| TTCCTGAATGAATCGTTTAT+CGG | 0.368687 | 6_2:+52958344 | None:intergenic |
| GAAAGGAGAACTTGAATTAT+GGG | 0.372458 | 6_2:-52958175 | Msa0919790:CDS |
| AACGATAGTATCTCAATTGC+AGG | 0.378929 | 6_2:+52959173 | None:intergenic |
| GAAAGTAGAAGAGTGATAAA+GGG | 0.384830 | 6_2:+52963443 | None:intergenic |
| AGTTCTCCTTTCTCGCTATA+AGG | 0.388101 | 6_2:+52958186 | None:intergenic |
| CCTCTTCAAGCTGTAGTTCA+AGG | 0.392173 | 6_2:-52963496 | Msa0919790:CDS |
| AAATCCCTCTAGTTATTGAT+AGG | 0.392176 | 6_2:-52958047 | Msa0919790:CDS |
| AAAACAAACGCACACTCATT+TGG | 0.400026 | 6_2:-52963757 | Msa0919790:five_prime_UTR |
| CTCTAGTTATTGATAGGATT+CGG | 0.409149 | 6_2:-52958041 | Msa0919790:CDS |
| CATGTTAAGTTTAATCCTCA+TGG | 0.411093 | 6_2:-52963205 | Msa0919790:CDS |
| CTTGACTAAATGCTTGTTCA+AGG | 0.411999 | 6_2:+52958751 | None:intergenic |
| GTCCCTACACCTTATTATCC+AGG | 0.416731 | 6_2:-52959119 | Msa0919790:CDS |
| AAGAAGAAGGTGGTTCAGAT+TGG | 0.421875 | 6_2:+52963557 | None:intergenic |
| ATTGCTGACGAAGTATTTGC+AGG | 0.422387 | 6_2:-52958600 | Msa0919790:CDS |
| GGAAGAAGCGTAGGAGAAGA+AGG | 0.426362 | 6_2:+52963367 | None:intergenic |
| GATGATTCTCTTTATTATGT+TGG | 0.428695 | 6_2:-52963256 | Msa0919790:CDS |
| AGGAACGATGAGTTTCATTC+CGG | 0.428810 | 6_2:+52963516 | None:intergenic |
| AGAAGAAGGTGGTTCAGATT+GGG | 0.432208 | 6_2:+52963558 | None:intergenic |
| TTGGGTTTGGGTCATTGACC+CGG | 0.433153 | 6_2:+52963606 | None:intergenic |
| ATCAGACCTTATAGCGAGAA+AGG | 0.438192 | 6_2:-52958192 | Msa0919790:CDS |
| TTGTTATTATTATTATTCTC+AGG | 0.442825 | 6_2:+52963394 | None:intergenic |
| GAAAGGAGAGGAGAAGAAGA+AGG | 0.446308 | 6_2:+52963690 | None:intergenic |
| AATGAGTGAGTGAGAGAGAA+AGG | 0.448306 | 6_2:+52963663 | None:intergenic |
| AAAGGAGAGGAGAAGAAGAA+GGG | 0.455083 | 6_2:+52963691 | None:intergenic |
| TCATCCTCTCCCTCTCGAAC+CGG | 0.457560 | 6_2:-52963535 | Msa0919790:CDS |
| CAGCGCCGGTATGTTCTGTT+GGG | 0.459303 | 6_2:-52958232 | Msa0919790:CDS |
| AATCCATGAAATGATTGATA+AGG | 0.464480 | 6_2:+52961623 | None:intergenic |
| ATGCAATGGCAAGCCGATCC+AGG | 0.473529 | 6_2:+52958117 | None:intergenic |
| GAACTTGGAGGGATCAATGA+TGG | 0.475995 | 6_2:-52961684 | Msa0919790:CDS |
| TTGCATAGGGTGAACTGCAC+AGG | 0.477514 | 6_2:-52962707 | Msa0919790:intron |
| GCTAAGATAAATATAACTCC+TGG | 0.479435 | 6_2:-52958135 | Msa0919790:CDS |
| GGTGTCAGAATATTGCCAAC+AGG | 0.485404 | 6_2:+52958675 | None:intergenic |
| GGATTAAACTTAACATGATA+AGG | 0.486687 | 6_2:+52963211 | None:intergenic |
| GATTGGTATGGTGTGGTTGA+AGG | 0.487037 | 6_2:+52963639 | None:intergenic |
| TCAGTACTTCGACAGTGAAC+AGG | 0.488659 | 6_2:+52958798 | None:intergenic |
| ATATTGCCAACAGGATTTGA+AGG | 0.489937 | 6_2:+52958684 | None:intergenic |
| CATTCCGGTTCGAGAGGGAG+AGG | 0.492695 | 6_2:+52963531 | None:intergenic |
| CAGTCTTATTCTATTTCGGT+TGG | 0.499153 | 6_2:+52958311 | None:intergenic |
| AACAAGTGTGATGGTGATGA+TGG | 0.502662 | 6_2:+52963721 | None:intergenic |
| GAGGGAGAGGATGAAGAAGA+AGG | 0.504498 | 6_2:+52963544 | None:intergenic |
| AAGAAGCGTAGGAGAAGAAG+GGG | 0.509079 | 6_2:+52963369 | None:intergenic |
| AGGGACGTAAGATGGCGTCC+AGG | 0.510730 | 6_2:-52958834 | Msa0919790:CDS |
| GATGTTAGTACCATATTTGA+CGG | 0.511266 | 6_2:+52959206 | None:intergenic |
| GAAGAACGAGGAAGAAGCGT+AGG | 0.511504 | 6_2:+52963358 | None:intergenic |
| TCAAATATGGTACTAACATC+GGG | 0.513697 | 6_2:-52959203 | Msa0919790:CDS |
| ATTGGTATGGTGTGGTTGAA+GGG | 0.514418 | 6_2:+52963640 | None:intergenic |
| ATGTTAAGTTTAATCCTCAT+GGG | 0.515359 | 6_2:-52963204 | Msa0919790:CDS |
| GTTTGGATTTGATTGAGAAA+TGG | 0.516654 | 6_2:-52961715 | Msa0919790:CDS |
| GAAATGGTTGGTGAAGAACT+TGG | 0.517138 | 6_2:-52961699 | Msa0919790:CDS |
| AACTTGGAGGGATCAATGAT+GGG | 0.518854 | 6_2:-52961683 | Msa0919790:CDS |
| TGAGATACTATCGTTCTGCT+TGG | 0.519831 | 6_2:-52959165 | Msa0919790:CDS |
| CCTCATGGGATTATTCAGCT+TGG | 0.520803 | 6_2:-52963190 | Msa0919790:CDS |
| GTGGATTGTTTAACCAAACT+AGG | 0.523731 | 6_2:-52958273 | Msa0919790:CDS |
| GTATTTGCAGGCTCCACGTA+CGG | 0.524369 | 6_2:-52958588 | Msa0919790:CDS |
| ACAGGGTGCACGAGAAACTC+AGG | 0.531038 | 6_2:-52962689 | Msa0919790:CDS |
| ACTGGTGCACAATGAGTTTG+TGG | 0.533109 | 6_2:-52958292 | Msa0919790:CDS |
| CGTTCGAATTTATCATCTCG+TGG | 0.535040 | 6_2:-52963331 | Msa0919790:CDS |
| GCTTTGACAGGGACGTAAGA+TGG | 0.539978 | 6_2:-52958842 | Msa0919790:intron |
| GATAAATATAACTCCTGGAT+CGG | 0.540003 | 6_2:-52958130 | Msa0919790:CDS |
| TCGATTGCTGGATTTAGAGT+CGG | 0.540691 | 6_2:-52958471 | Msa0919790:CDS |
| CAACCGAAATAGAATAAGAC+TGG | 0.544443 | 6_2:-52958310 | Msa0919790:CDS |
| TTTAGTGGATTGGTATGGTG+TGG | 0.546076 | 6_2:+52963632 | None:intergenic |
| ACCATCCTGGTTCTATGCAA+TGG | 0.546338 | 6_2:+52958103 | None:intergenic |
| TGGGTTTGGGTCATTGACCC+GGG | 0.546981 | 6_2:+52963607 | None:intergenic |
| GCTTGGTTTGTCTGATAACA+AGG | 0.548963 | 6_2:-52963173 | Msa0919790:intron |
| GATAATAAGGTGTAGGGACA+AGG | 0.549163 | 6_2:+52959123 | None:intergenic |
| TGAGAGAGAAAGGAAAGGAA+AGG | 0.553080 | 6_2:+52963673 | None:intergenic |
| CTCTAAATCCAGCAATCGAA+AGG | 0.554066 | 6_2:+52958475 | None:intergenic |
| GAGTTTCATTCCGGTTCGAG+AGG | 0.556125 | 6_2:+52963525 | None:intergenic |
| TATTGCCAACAGGATTTGAA+GGG | 0.556392 | 6_2:+52958685 | None:intergenic |
| GAAGAAGCGTAGGAGAAGAA+GGG | 0.557441 | 6_2:+52963368 | None:intergenic |
| GGAGAGGAGAAGAAGAAGGG+AGG | 0.559626 | 6_2:+52963694 | None:intergenic |
| GAGAAAGGAAAGGAAAGGAG+AGG | 0.562092 | 6_2:+52963678 | None:intergenic |
| GTCAAATATGGTACTAACAT+CGG | 0.563753 | 6_2:-52959204 | Msa0919790:CDS |
| ACAGGTATTAAGTCTATCCC+TGG | 0.566102 | 6_2:+52958816 | None:intergenic |
| TCCCTACACCTTATTATCCA+GGG | 0.567075 | 6_2:-52959118 | Msa0919790:intron |
| GGATTTGATTGAGAAATGGT+TGG | 0.569337 | 6_2:-52961711 | Msa0919790:CDS |
| AGTGTGATGGTGATGATGGA+TGG | 0.569574 | 6_2:+52963725 | None:intergenic |
| GGAGAGGATGAAGAAGAAGG+TGG | 0.569639 | 6_2:+52963547 | None:intergenic |
| AAGTGTGCTAAGAGCAGCGC+CGG | 0.573828 | 6_2:-52958246 | Msa0919790:CDS |
| GAAGTAACTAACCTCTGTGT+TGG | 0.575820 | 6_2:+52958375 | None:intergenic |
| GCCATTGCATAGAACCAGGA+TGG | 0.576139 | 6_2:-52958104 | Msa0919790:CDS |
| ATATTCTGAATCGAGAACTT+CGG | 0.576552 | 6_2:+52958542 | None:intergenic |
| TTCTGTTGGGCTGATATGAG+TGG | 0.577234 | 6_2:-52958219 | Msa0919790:CDS |
| ATGTTAGTACCATATTTGAC+GGG | 0.579929 | 6_2:+52959207 | None:intergenic |
| AAACTCCTCGCTTCCGTACG+TGG | 0.582162 | 6_2:+52958575 | None:intergenic |
| ATGGTTGGTGAAGAACTTGG+AGG | 0.582724 | 6_2:-52961696 | Msa0919790:CDS |
| ACCCTGGATAATAAGGTGTA+GGG | 0.583042 | 6_2:+52959117 | None:intergenic |
| CGAATCCTATCAATAACTAG+AGG | 0.584201 | 6_2:+52958042 | None:intergenic |
| TCGTTCTGCTTGGCAGACCA+TGG | 0.585867 | 6_2:-52959155 | Msa0919790:CDS |
| AGCCGCGTTCATATAGTGTA+CGG | 0.586505 | 6_2:-52958510 | Msa0919790:CDS |
| AAACGAGGAGTCAAAGTTCG+CGG | 0.587306 | 6_2:-52958723 | Msa0919790:CDS |
| TACCCTGGATAATAAGGTGT+AGG | 0.592046 | 6_2:+52959116 | None:intergenic |
| GTGAGTGAGAGAGAAAGGAA+AGG | 0.595183 | 6_2:+52963668 | None:intergenic |
| AAACAAATACGAAACCATCC+TGG | 0.595378 | 6_2:+52958090 | None:intergenic |
| GGGACGTAAGATGGCGTCCA+GGG | 0.596829 | 6_2:-52958833 | Msa0919790:CDS |
| TTGACTAAATGCTTGTTCAA+GGG | 0.597175 | 6_2:+52958752 | None:intergenic |
| TCGAACCCTTCAAATCCTGT+TGG | 0.599882 | 6_2:-52958690 | Msa0919790:CDS |
| GGACAAGGAATGCATTTCCA+TGG | 0.601989 | 6_2:+52959138 | None:intergenic |
| GGAGGAAGAAACAAGTGTGA+TGG | 0.605618 | 6_2:+52963712 | None:intergenic |
| AGTTTCATTCCGGTTCGAGA+GGG | 0.606450 | 6_2:+52963526 | None:intergenic |
| GCTTGCCATTGCATAGAACC+AGG | 0.608825 | 6_2:-52958108 | Msa0919790:CDS |
| CCTTGAACTACAGCTTGAAG+AGG | 0.618301 | 6_2:+52963496 | None:intergenic |
| TTTATGCATCAGGTTATGGG+AGG | 0.621158 | 6_2:-52959245 | Msa0919790:CDS |
| AGGCTCCACGTACGGAAGCG+AGG | 0.623216 | 6_2:-52958580 | Msa0919790:CDS |
| TGGTTGGTGAAGAACTTGGA+GGG | 0.633885 | 6_2:-52961695 | Msa0919790:CDS |
| ATCAGCCCAACAGAACATAC+CGG | 0.634233 | 6_2:+52958227 | None:intergenic |
| GCTGTAGTTCAAGGTCGCAA+CGG | 0.635467 | 6_2:-52963487 | Msa0919790:CDS |
| GAATCCTATCAATAACTAGA+GGG | 0.646614 | 6_2:+52958043 | None:intergenic |
| TGCATAGGGTGAACTGCACA+GGG | 0.654387 | 6_2:-52962706 | Msa0919790:intron |
| TTTAGTCAAGCAAGAAAACG+AGG | 0.661177 | 6_2:-52958738 | Msa0919790:CDS |
| ACTTGGAGGGATCAATGATG+GGG | 0.673771 | 6_2:-52961682 | Msa0919790:CDS |
| CAGGGTGCACGAGAAACTCA+GGG | 0.683570 | 6_2:-52962688 | Msa0919790:intron |
| ATAAAGGGATTAAACTACCG+AGG | 0.687862 | 6_2:+52963458 | None:intergenic |
| CCAAGCTGAATAATCCCATG+AGG | 0.701633 | 6_2:+52963190 | None:intergenic |
| GGCCGTACACTATATGAACG+CGG | 0.742883 | 6_2:+52958508 | None:intergenic |
| TTCGAACGAGAAGAAGAACG+AGG | 0.751950 | 6_2:+52963346 | None:intergenic |
| CTATATCTGCACCAACACAG+AGG | 0.756871 | 6_2:-52958386 | Msa0919790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAGATGAATAATTTTAT+AGG | - | chr6_2:52961414-52961433 | Msa0919790:intron | 10.0% |
| !! | AAGATAAGTTTATATTTAAA+TGG | - | chr6_2:52962157-52962176 | Msa0919790:intron | 10.0% |
| !! | ATGTATAAAAACTATTTATA+AGG | - | chr6_2:52962807-52962826 | Msa0919790:intron | 10.0% |
| !!! | TTGTTATTATTATTATTCTC+AGG | + | chr6_2:52958372-52958391 | None:intergenic | 15.0% |
| !!! | TGTTTTTTAATGATTGTTTT+CGG | - | chr6_2:52958642-52958661 | Msa0919790:CDS | 15.0% |
| !!! | TTTTGGTTAAAAAAAAATGT+TGG | - | chr6_2:52958688-52958707 | Msa0919790:CDS | 15.0% |
| !! | AAATTGTAAATGACTAAATT+GGG | + | chr6_2:52959228-52959247 | None:intergenic | 15.0% |
| !! | AAAATTGTAAATGACTAAAT+TGG | + | chr6_2:52959229-52959248 | None:intergenic | 15.0% |
| !! | AAAATATCAACAACAAATTT+GGG | + | chr6_2:52959277-52959296 | None:intergenic | 15.0% |
| !!! | ATTTTATGTTAAGACTAAAT+TGG | - | chr6_2:52959889-52959908 | Msa0919790:intron | 15.0% |
| !!! | TTTTATGTTAAGACTAAATT+GGG | - | chr6_2:52959890-52959909 | Msa0919790:intron | 15.0% |
| !! | TGTTATCATTAAATATTAAG+TGG | - | chr6_2:52961102-52961121 | Msa0919790:intron | 15.0% |
| !!! | TGATGATGATTTTTAAATTT+TGG | - | chr6_2:52961295-52961314 | Msa0919790:intron | 15.0% |
| !!! | TAACTCTAAAATTAAAATGT+CGG | + | chr6_2:52961878-52961897 | None:intergenic | 15.0% |
| !! | AATAAAATTAGATAGAAAGT+TGG | - | chr6_2:52961974-52961993 | Msa0919790:intron | 15.0% |
| !!! | CAATGTTTATGTTGTTTTTT+TGG | - | chr6_2:52958671-52958690 | Msa0919790:CDS | 20.0% |
| !! | AGTTTATAGTTCGTATTATT+TGG | - | chr6_2:52958733-52958752 | Msa0919790:CDS | 20.0% |
| !! | TCATTTGGTTAAAAAAATGT+TGG | - | chr6_2:52958831-52958850 | Msa0919790:CDS | 20.0% |
| !!! | AGAAACACTTTGAAATATTT+TGG | + | chr6_2:52958912-52958931 | None:intergenic | 20.0% |
| !!! | TTTAGTCATTTACAATTTTC+TGG | - | chr6_2:52959230-52959249 | Msa0919790:CDS | 20.0% |
| !!! | TTAGTCATTTACAATTTTCT+GGG | - | chr6_2:52959231-52959250 | Msa0919790:CDS | 20.0% |
| !! | GAAAATATCAACAACAAATT+TGG | + | chr6_2:52959278-52959297 | None:intergenic | 20.0% |
| !!! | TTGTTGATATTTTCATAATG+AGG | - | chr6_2:52959284-52959303 | Msa0919790:intron | 20.0% |
| !!! | TCTGTTTTGTTTTATTAGAA+TGG | - | chr6_2:52959318-52959337 | Msa0919790:intron | 20.0% |
| !!! | TTTTGTTTTATTAGAATGGA+GGG | - | chr6_2:52959322-52959341 | Msa0919790:intron | 20.0% |
| !! | TTATTATACTGAAGACAAAT+TGG | - | chr6_2:52959790-52959809 | Msa0919790:intron | 20.0% |
| !! | GATATCAATTTGAGTATAAA+TGG | - | chr6_2:52960110-52960129 | Msa0919790:intron | 20.0% |
| !! | ACAATATTAGAAAAAGAGTT+GGG | - | chr6_2:52960487-52960506 | Msa0919790:intron | 20.0% |
| !!! | TTTAACCTTTAGTTTTTTCT+AGG | + | chr6_2:52960648-52960667 | None:intergenic | 20.0% |
| !!! | AACTAAAGGTTAAAGTATTA+AGG | - | chr6_2:52960654-52960673 | Msa0919790:intron | 20.0% |
| !! | TAGAGATTAATGAGTTATAT+AGG | - | chr6_2:52960680-52960699 | Msa0919790:intron | 20.0% |
| !! | AGAGATTAATGAGTTATATA+GGG | - | chr6_2:52960681-52960700 | Msa0919790:intron | 20.0% |
| !! | TGATATATCATTGAACATTA+TGG | - | chr6_2:52960707-52960726 | Msa0919790:intron | 20.0% |
| !! | AATAAAATGTTGTCAAATAG+CGG | + | chr6_2:52960930-52960949 | None:intergenic | 20.0% |
| !! | TTATTCTAAATAGTGTATCA+CGG | - | chr6_2:52960945-52960964 | Msa0919790:intron | 20.0% |
| !!! | TAACTAAACTGCTTATTTTA+AGG | - | chr6_2:52961013-52961032 | Msa0919790:intron | 20.0% |
| !! | ACAAAATTGCTAAAACTTAT+GGG | + | chr6_2:52961199-52961218 | None:intergenic | 20.0% |
| !! | TACAAAATTGCTAAAACTTA+TGG | + | chr6_2:52961200-52961219 | None:intergenic | 20.0% |
| !! | TAATTAAAATTAAGCACAAG+AGG | + | chr6_2:52961253-52961272 | None:intergenic | 20.0% |
| !! | AATTATTCATCTTAAACTTC+TGG | + | chr6_2:52961410-52961429 | None:intergenic | 20.0% |
| !! | GAAAATATGGATATTATTAG+AGG | + | chr6_2:52961465-52961484 | None:intergenic | 20.0% |
| !!! | TTAATTTTGTTACAACTGAT+GGG | - | chr6_2:52961924-52961943 | Msa0919790:intron | 20.0% |
| !! | TGATACATAATAAGACATTA+TGG | - | chr6_2:52962303-52962322 | Msa0919790:intron | 20.0% |
| !!! | TGAATTTTGTTGATTTAGTT+AGG | - | chr6_2:52962427-52962446 | Msa0919790:intron | 20.0% |
| !!! | TTAAACTATTGATTCCTATT+TGG | - | chr6_2:52962685-52962704 | Msa0919790:intron | 20.0% |
| !!! | TAAACTATTGATTCCTATTT+GGG | - | chr6_2:52962686-52962705 | Msa0919790:intron | 20.0% |
| ! | GATGATTCTCTTTATTATGT+TGG | - | chr6_2:52958507-52958526 | Msa0919790:CDS | 25.0% |
| ! | GGATTAAACTTAACATGATA+AGG | + | chr6_2:52958555-52958574 | None:intergenic | 25.0% |
| ! | ATGTTAAGTTTAATCCTCAT+GGG | - | chr6_2:52958559-52958578 | Msa0919790:CDS | 25.0% |
| ! | AAAATGTTGATGTTGTCATT+TGG | - | chr6_2:52958816-52958835 | Msa0919790:CDS | 25.0% |
| ! | AAATGTTTATGTTGTTGCAT+AGG | - | chr6_2:52959042-52959061 | Msa0919790:intron | 25.0% |
| ! | AATGTTTATGTTGTTGCATA+GGG | - | chr6_2:52959043-52959062 | Msa0919790:intron | 25.0% |
| ! | AAATGTTTATGTTGTTGCAT+AGG | - | chr6_2:52959042-52959061 | Msa0919790:intron | 25.0% |
| ! | AATGTTTATGTTGTTGCATA+GGG | - | chr6_2:52959043-52959062 | Msa0919790:intron | 25.0% |
| !! | TAGTCATTTACAATTTTCTG+GGG | - | chr6_2:52959232-52959251 | Msa0919790:CDS | 25.0% |
| !!! | GTTTTGTTTTATTAGAATGG+AGG | - | chr6_2:52959321-52959340 | Msa0919790:intron | 25.0% |
| !! | TAAAACCACATTTTCATACT+GGG | + | chr6_2:52959359-52959378 | None:intergenic | 25.0% |
| !! | ATAAAACCACATTTTCATAC+TGG | + | chr6_2:52959360-52959379 | None:intergenic | 25.0% |
| !! | TTTTATCTTTGAGTGTCTAA+GGG | - | chr6_2:52959374-52959393 | Msa0919790:intron | 25.0% |
| !! | TTTTGAATAAAGACCCAAAT+TGG | - | chr6_2:52959700-52959719 | Msa0919790:intron | 25.0% |
| ! | AAAATTGTAAGCACCAATTT+GGG | + | chr6_2:52959716-52959735 | None:intergenic | 25.0% |
| ! | AAAAATTGTAAGCACCAATT+TGG | + | chr6_2:52959717-52959736 | None:intergenic | 25.0% |
| ! | TGTCATGACATGAATTAATT+TGG | - | chr6_2:52959861-52959880 | Msa0919790:intron | 25.0% |
| ! | ACAAGAGTAAATACACAATT+TGG | + | chr6_2:52959937-52959956 | None:intergenic | 25.0% |
| !!! | ACTCTTGTCTTTTACTTTTA+TGG | - | chr6_2:52959949-52959968 | Msa0919790:intron | 25.0% |
| !!! | CTCTTGTCTTTTACTTTTAT+GGG | - | chr6_2:52959950-52959969 | Msa0919790:intron | 25.0% |
| ! | AATCCATGAAATGATTGATA+AGG | + | chr6_2:52960143-52960162 | None:intergenic | 25.0% |
| ! | ATTTATAATTCTATCACGTC+TGG | + | chr6_2:52960466-52960485 | None:intergenic | 25.0% |
| ! | GACAATATTAGAAAAAGAGT+TGG | - | chr6_2:52960486-52960505 | Msa0919790:intron | 25.0% |
| ! | CAATATTAGAAAAAGAGTTG+GGG | - | chr6_2:52960488-52960507 | Msa0919790:intron | 25.0% |
| ! | TATATCATTGAACATTATGG+TGG | - | chr6_2:52960710-52960729 | Msa0919790:intron | 25.0% |
| ! | ATCAACAACACTTAAATAAG+TGG | + | chr6_2:52960840-52960859 | None:intergenic | 25.0% |
| !! | TATTTAAGTGTTGTTGATCT+TGG | - | chr6_2:52960842-52960861 | Msa0919790:intron | 25.0% |
| !!! | TGTGTTGATATTTAGCTTTT+AGG | - | chr6_2:52961055-52961074 | Msa0919790:intron | 25.0% |
| ! | TTATAGGATTTCTAACATTC+TGG | - | chr6_2:52961430-52961449 | Msa0919790:intron | 25.0% |
| ! | CAACTATGTATAGGAAAATA+TGG | + | chr6_2:52961478-52961497 | None:intergenic | 25.0% |
| ! | ACTTTGTACTAAATAGTGTA+CGG | - | chr6_2:52961574-52961593 | Msa0919790:intron | 25.0% |
| !! | GTTAATTTTGTTACAACTGA+TGG | - | chr6_2:52961923-52961942 | Msa0919790:intron | 25.0% |
| !! | TAATTTTGTTACAACTGATG+GGG | - | chr6_2:52961925-52961944 | Msa0919790:intron | 25.0% |
| ! | TTGTCAAATAGCTACTATTA+TGG | - | chr6_2:52962226-52962245 | Msa0919790:intron | 25.0% |
| ! | TGTCTAATGATCAAAGAAAA+TGG | + | chr6_2:52962283-52962302 | None:intergenic | 25.0% |
| ! | TTAACAGACAAACAAAACAA+CGG | + | chr6_2:52962458-52962477 | None:intergenic | 25.0% |
| ! | TTTGTTTGTCTGTTAAACTT+TGG | - | chr6_2:52962462-52962481 | Msa0919790:intron | 25.0% |
| ! | AGATCAAATAAAACCCAAAT+AGG | + | chr6_2:52962702-52962721 | None:intergenic | 25.0% |
| ! | CATTTCTCTTAAAAGAAGTT+AGG | - | chr6_2:52962735-52962754 | Msa0919790:intron | 25.0% |
| !!! | TGAAAATCTGCTCATTTTTT+TGG | + | chr6_2:52963356-52963375 | None:intergenic | 25.0% |
| GAAAGTAGAAGAGTGATAAA+GGG | + | chr6_2:52958323-52958342 | None:intergenic | 30.0% | |
| AGAAAGTAGAAGAGTGATAA+AGG | + | chr6_2:52958324-52958343 | None:intergenic | 30.0% | |
| CATGTTAAGTTTAATCCTCA+TGG | - | chr6_2:52958558-52958577 | Msa0919790:CDS | 30.0% | |
| CGAACTATAAACTCATAAGA+TGG | + | chr6_2:52958726-52958745 | None:intergenic | 30.0% | |
| ! | TTTTATAATCCGAACTGCAT+AGG | - | chr6_2:52958757-52958776 | Msa0919790:CDS | 30.0% |
| TTTATAATCCGAACTGCATA+GGG | - | chr6_2:52958758-52958777 | Msa0919790:CDS | 30.0% | |
| TCATAGGGTGGAAAAAATAA+CGG | + | chr6_2:52958857-52958876 | None:intergenic | 30.0% | |
| ! | ATATTTCAAAGTGTTTCTCG+AGG | - | chr6_2:52958914-52958933 | Msa0919790:intron | 30.0% |
| ! | TTTTATAATCCGAACTGCAT+AGG | - | chr6_2:52958757-52958776 | Msa0919790:CDS | 30.0% |
| TTTATAATCCGAACTGCATA+GGG | - | chr6_2:52958758-52958777 | Msa0919790:CDS | 30.0% | |
| ! | AAAACCACATTTTCATACTG+GGG | + | chr6_2:52959358-52959377 | None:intergenic | 30.0% |
| ! | GTTTTATCTTTGAGTGTCTA+AGG | - | chr6_2:52959373-52959392 | Msa0919790:intron | 30.0% |
| TTTATCTTTGAGTGTCTAAG+GGG | - | chr6_2:52959375-52959394 | Msa0919790:intron | 30.0% | |
| ! | GTATTATCGATAACTTGTCA+AGG | - | chr6_2:52959463-52959482 | Msa0919790:intron | 30.0% |
| TACAAACGATTTCTAAGTGT+AGG | - | chr6_2:52959630-52959649 | Msa0919790:intron | 30.0% | |
| AAAATTGTGAGGGATCAAAA+TGG | - | chr6_2:52959659-52959678 | Msa0919790:intron | 30.0% | |
| AAATTGTGAGGGATCAAAAT+GGG | - | chr6_2:52959660-52959679 | Msa0919790:intron | 30.0% | |
| GTTTGGATTTGATTGAGAAA+TGG | - | chr6_2:52960048-52960067 | Msa0919790:intron | 30.0% | |
| GTTATACAAAAATGTTGCTC+AGG | - | chr6_2:52960241-52960260 | Msa0919790:intron | 30.0% | |
| TTATCATACAGCTGTAAAAC+CGG | - | chr6_2:52960279-52960298 | Msa0919790:intron | 30.0% | |
| TAAAACCGGTAATGTTGTAT+GGG | - | chr6_2:52960293-52960312 | Msa0919790:intron | 30.0% | |
| TACCTGTAGATTCTGTAATA+AGG | - | chr6_2:52960574-52960593 | Msa0919790:intron | 30.0% | |
| AATAAGGAGAGTAGATAAGA+TGG | - | chr6_2:52960590-52960609 | Msa0919790:intron | 30.0% | |
| GAAGACCTAGAAAAAACTAA+AGG | - | chr6_2:52960640-52960659 | Msa0919790:intron | 30.0% | |
| ! | TGCATTGTATTTTGCTTAGA+GGG | - | chr6_2:52960789-52960808 | Msa0919790:intron | 30.0% |
| CTTCTGGTATAACTGATTAA+AGG | + | chr6_2:52961394-52961413 | None:intergenic | 30.0% | |
| ATATAACCTTGTTAGCTGAA+TGG | - | chr6_2:52961686-52961705 | Msa0919790:CDS | 30.0% | |
| TAAAAACCATTCAGCTAACA+AGG | + | chr6_2:52961695-52961714 | None:intergenic | 30.0% | |
| ! | AATTTTGTTACAACTGATGG+GGG | - | chr6_2:52961926-52961945 | Msa0919790:intron | 30.0% |
| ACACAAAACAAGTTAGGATT+AGG | - | chr6_2:52961951-52961970 | Msa0919790:intron | 30.0% | |
| ACAAGTCATTCTTGAAAAGA+TGG | - | chr6_2:52962001-52962020 | Msa0919790:intron | 30.0% | |
| ! | ATCTAACCTATAGTTTTCCA+TGG | + | chr6_2:52962133-52962152 | None:intergenic | 30.0% |
| CTAATGATCAAAGAAAATGG+CGG | + | chr6_2:52962280-52962299 | None:intergenic | 30.0% | |
| ! | AGATTTTATGCATCAGGTTA+TGG | - | chr6_2:52962514-52962533 | Msa0919790:intron | 30.0% |
| ! | GATTTTATGCATCAGGTTAT+GGG | - | chr6_2:52962515-52962534 | Msa0919790:intron | 30.0% |
| ATGTTAGTACCATATTTGAC+GGG | + | chr6_2:52962559-52962578 | None:intergenic | 30.0% | |
| GATGTTAGTACCATATTTGA+CGG | + | chr6_2:52962560-52962579 | None:intergenic | 30.0% | |
| GTCAAATATGGTACTAACAT+CGG | - | chr6_2:52962559-52962578 | Msa0919790:intron | 30.0% | |
| TCAAATATGGTACTAACATC+GGG | - | chr6_2:52962560-52962579 | Msa0919790:intron | 30.0% | |
| TTGACTAAATGCTTGTTCAA+GGG | + | chr6_2:52963014-52963033 | None:intergenic | 30.0% | |
| ATATTCTGAATCGAGAACTT+CGG | + | chr6_2:52963224-52963243 | None:intergenic | 30.0% | |
| ! | TTCACACAACAAAACTGTTT+TGG | - | chr6_2:52963324-52963343 | Msa0919790:CDS | 30.0% |
| TTCCTGAATGAATCGTTTAT+CGG | + | chr6_2:52963422-52963441 | None:intergenic | 30.0% | |
| AGAAAGGAGAACTTGAATTA+TGG | - | chr6_2:52963587-52963606 | Msa0919790:CDS | 30.0% | |
| GAAAGGAGAACTTGAATTAT+GGG | - | chr6_2:52963588-52963607 | Msa0919790:CDS | 30.0% | |
| GCTAAGATAAATATAACTCC+TGG | - | chr6_2:52963628-52963647 | Msa0919790:five_prime_UTR | 30.0% | |
| GATAAATATAACTCCTGGAT+CGG | - | chr6_2:52963633-52963652 | Msa0919790:five_prime_UTR | 30.0% | |
| ! | TTTTACAACTATATCGTTCG+AGG | - | chr6_2:52963693-52963712 | Msa0919790:five_prime_UTR | 30.0% |
| AAATCCCTCTAGTTATTGAT+AGG | - | chr6_2:52963716-52963735 | Msa0919790:five_prime_UTR | 30.0% | |
| GAATCCTATCAATAACTAGA+GGG | + | chr6_2:52963723-52963742 | None:intergenic | 30.0% | |
| CTCTAGTTATTGATAGGATT+CGG | - | chr6_2:52963722-52963741 | Msa0919790:five_prime_UTR | 30.0% | |
| ATACCAATCCACTAAAAACC+CGG | - | chr6_2:52958138-52958157 | Msa0919790:CDS | 35.0% | |
| !!! | GTTCAGATTGGGTTTTTTTG+GGG | + | chr6_2:52958197-52958216 | None:intergenic | 35.0% |
| !!! | GGTTCAGATTGGGTTTTTTT+GGG | + | chr6_2:52958198-52958217 | None:intergenic | 35.0% |
| !!! | TGGTTCAGATTGGGTTTTTT+TGG | + | chr6_2:52958199-52958218 | None:intergenic | 35.0% |
| ATAAAGGGATTAAACTACCG+AGG | + | chr6_2:52958308-52958327 | None:intergenic | 35.0% | |
| TAGGCGTTAGAAAATTGTGA+GGG | - | chr6_2:52959649-52959668 | Msa0919790:intron | 35.0% | |
| !!! | TTTGGGTTTTTGTTGTTGTG+TGG | - | chr6_2:52960016-52960035 | Msa0919790:intron | 35.0% |
| GGATTTGATTGAGAAATGGT+TGG | - | chr6_2:52960052-52960071 | Msa0919790:intron | 35.0% | |
| GTAAAACCGGTAATGTTGTA+TGG | - | chr6_2:52960292-52960311 | Msa0919790:intron | 35.0% | |
| TTTGTCCCATACAACATTAC+CGG | + | chr6_2:52960301-52960320 | None:intergenic | 35.0% | |
| CGATAGTAAAATAAGCGTAG+AGG | - | chr6_2:52960345-52960364 | Msa0919790:intron | 35.0% | |
| !!! | CACTTATTTTACTCTCGTGT+TGG | + | chr6_2:52960411-52960430 | None:intergenic | 35.0% |
| AGCACCTATAGTACAAAAGA+CGG | - | chr6_2:52960512-52960531 | Msa0919790:intron | 35.0% | |
| ! | TCTACCGTCTTTTGTACTAT+AGG | + | chr6_2:52960519-52960538 | None:intergenic | 35.0% |
| CTCCTTATTACAGAATCTAC+AGG | + | chr6_2:52960579-52960598 | None:intergenic | 35.0% | |
| AGTCAAATCACTATAGGCAA+AGG | - | chr6_2:52960618-52960637 | Msa0919790:intron | 35.0% | |
| ! | CTGCATTGTATTTTGCTTAG+AGG | - | chr6_2:52960788-52960807 | Msa0919790:intron | 35.0% |
| AAGGTTAAACCACTAATGTG+TGG | + | chr6_2:52960900-52960919 | None:intergenic | 35.0% | |
| CACAATGAGAATAGGTGTTA+TGG | - | chr6_2:52961147-52961166 | Msa0919790:intron | 35.0% | |
| TTTGGAGAATTGAAGTGTGA+AGG | - | chr6_2:52961313-52961332 | Msa0919790:intron | 35.0% | |
| TTGGAGAATTGAAGTGTGAA+GGG | - | chr6_2:52961314-52961333 | Msa0919790:intron | 35.0% | |
| CACGATTCACAACTATGTAT+AGG | + | chr6_2:52961487-52961506 | None:intergenic | 35.0% | |
| CTATACATAGTTGTGAATCG+TGG | - | chr6_2:52961485-52961504 | Msa0919790:intron | 35.0% | |
| AATAGCGACTATAGCACTAT+AGG | + | chr6_2:52961547-52961566 | None:intergenic | 35.0% | |
| TTGTACTAAATAGTGTACGG+CGG | - | chr6_2:52961577-52961596 | Msa0919790:intron | 35.0% | |
| TGTTGTCAAATAGTGGCTAT+AGG | + | chr6_2:52961634-52961653 | None:intergenic | 35.0% | |
| !! | ACTAGCATTGGCTCAAATAT+GGG | + | chr6_2:52961662-52961681 | None:intergenic | 35.0% |
| !! | AACTAGCATTGGCTCAAATA+TGG | + | chr6_2:52961663-52961682 | None:intergenic | 35.0% |
| GGTTATATCTCAACTAGCAT+TGG | + | chr6_2:52961674-52961693 | None:intergenic | 35.0% | |
| !! | GGTTTGTTGCATCAAGATAA+AGG | + | chr6_2:52961857-52961876 | None:intergenic | 35.0% |
| CACTATTAAGGTAGACTAGA+TGG | - | chr6_2:52962075-52962094 | Msa0919790:intron | 35.0% | |
| GGTTCAATAGTTAGAGAAAG+AGG | - | chr6_2:52962103-52962122 | Msa0919790:intron | 35.0% | |
| ! | AAACCTTTTCGCACTAGATA+GGG | + | chr6_2:52962339-52962358 | None:intergenic | 35.0% |
| ! | AAAACCTTTTCGCACTAGAT+AGG | + | chr6_2:52962340-52962359 | None:intergenic | 35.0% |
| ! | TAGTGCGAAAAGGTTTTTGA+CGG | - | chr6_2:52962343-52962362 | Msa0919790:intron | 35.0% |
| !!! | GTTGTTTGCTATGATTTTGC+AGG | - | chr6_2:52962484-52962503 | Msa0919790:intron | 35.0% |
| AGAATTTGACCCGTCAAATA+TGG | - | chr6_2:52962547-52962566 | Msa0919790:intron | 35.0% | |
| AACGATAGTATCTCAATTGC+AGG | + | chr6_2:52962593-52962612 | None:intergenic | 35.0% | |
| TTATTATCCAGGGTAATCGA+CGG | - | chr6_2:52962655-52962674 | Msa0919790:intron | 35.0% | |
| CTTGACTAAATGCTTGTTCA+AGG | + | chr6_2:52963015-52963034 | None:intergenic | 35.0% | |
| TTTAGTCAAGCAAGAAAACG+AGG | - | chr6_2:52963025-52963044 | Msa0919790:intron | 35.0% | |
| TATTGCCAACAGGATTTGAA+GGG | + | chr6_2:52963081-52963100 | None:intergenic | 35.0% | |
| ATATTGCCAACAGGATTTGA+AGG | + | chr6_2:52963082-52963101 | None:intergenic | 35.0% | |
| !! | AGAAGACTGAAAAGCATTTC+TGG | + | chr6_2:52963112-52963131 | None:intergenic | 35.0% |
| ! | CAATCGAAAGGTCTTTTGAT+AGG | + | chr6_2:52963279-52963298 | None:intergenic | 35.0% |
| TTCCGATAAACGATTCATTC+AGG | - | chr6_2:52963417-52963436 | Msa0919790:CDS | 35.0% | |
| !! | CAGTCTTATTCTATTTCGGT+TGG | + | chr6_2:52963455-52963474 | None:intergenic | 35.0% |
| CAACCGAAATAGAATAAGAC+TGG | - | chr6_2:52963453-52963472 | Msa0919790:CDS | 35.0% | |
| !! | GCACCAGTCTTATTCTATTT+CGG | + | chr6_2:52963459-52963478 | None:intergenic | 35.0% |
| ! | GTGGATTGTTTAACCAAACT+AGG | - | chr6_2:52963490-52963509 | Msa0919790:CDS | 35.0% |
| AAACAAATACGAAACCATCC+TGG | + | chr6_2:52963676-52963695 | None:intergenic | 35.0% | |
| CGAATCCTATCAATAACTAG+AGG | + | chr6_2:52963724-52963743 | None:intergenic | 35.0% | |
| ! | AACAAGTGTGATGGTGATGA+TGG | + | chr6_2:52958045-52958064 | None:intergenic | 40.0% |
| AAAGGAGAGGAGAAGAAGAA+GGG | + | chr6_2:52958075-52958094 | None:intergenic | 40.0% | |
| TGAGAGAGAAAGGAAAGGAA+AGG | + | chr6_2:52958093-52958112 | None:intergenic | 40.0% | |
| AATGAGTGAGTGAGAGAGAA+AGG | + | chr6_2:52958103-52958122 | None:intergenic | 40.0% | |
| ATTGGTATGGTGTGGTTGAA+GGG | + | chr6_2:52958126-52958145 | None:intergenic | 40.0% | |
| !! | TTTAGTGGATTGGTATGGTG+TGG | + | chr6_2:52958134-52958153 | None:intergenic | 40.0% |
| !!! | GGGTTTTTAGTGGATTGGTA+TGG | + | chr6_2:52958139-52958158 | None:intergenic | 40.0% |
| TACCAATCCACTAAAAACCC+GGG | - | chr6_2:52958139-52958158 | Msa0919790:CDS | 40.0% | |
| !!! | GGTGGGTTTTTTTTGGGTTT+GGG | + | chr6_2:52958172-52958191 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTTTTTGGGTT+TGG | + | chr6_2:52958173-52958192 | None:intergenic | 40.0% |
| !!! | AGATTGGGTTTTTTTGGGGT+TGG | + | chr6_2:52958193-52958212 | None:intergenic | 40.0% |
| AGAAGAAGGTGGTTCAGATT+GGG | + | chr6_2:52958208-52958227 | None:intergenic | 40.0% | |
| AAGAAGAAGGTGGTTCAGAT+TGG | + | chr6_2:52958209-52958228 | None:intergenic | 40.0% | |
| AGGAACGATGAGTTTCATTC+CGG | + | chr6_2:52958250-52958269 | None:intergenic | 40.0% | |
| CGTTCGAATTTATCATCTCG+TGG | - | chr6_2:52958432-52958451 | Msa0919790:CDS | 40.0% | |
| !! | GCTTGGTTTGTCTGATAACA+AGG | - | chr6_2:52958590-52958609 | Msa0919790:CDS | 40.0% |
| AGGGTGCAAGAGAAACTTAT+AGG | - | chr6_2:52958777-52958796 | Msa0919790:CDS | 40.0% | |
| ! | AGTTTCTTGCGCGTCTTATT+TGG | - | chr6_2:52958876-52958895 | Msa0919790:intron | 40.0% |
| ACAGTGTGTTTATGACAGCA+TGG | - | chr6_2:52958942-52958961 | Msa0919790:intron | 40.0% | |
| AGAGTGCACGAGAAATTCAT+AGG | - | chr6_2:52959151-52959170 | Msa0919790:CDS | 40.0% | |
| GAGTGCACGAGAAATTCATA+GGG | - | chr6_2:52959152-52959171 | Msa0919790:CDS | 40.0% | |
| ! | TCTAAGGGGTTTGTTTGGAT+TGG | - | chr6_2:52959389-52959408 | Msa0919790:intron | 40.0% |
| GTAGGCGTTAGAAAATTGTG+AGG | - | chr6_2:52959648-52959667 | Msa0919790:intron | 40.0% | |
| !! | CAGAAAGACTGATTTGTTGC+TGG | - | chr6_2:52959830-52959849 | Msa0919790:intron | 40.0% |
| TTGTGTGGTGTAGTTGAGTT+TGG | - | chr6_2:52960031-52960050 | Msa0919790:intron | 40.0% | |
| !! | GAAATGGTTGGTGAAGAACT+TGG | - | chr6_2:52960064-52960083 | Msa0919790:intron | 40.0% |
| AACTTGGAGGGATCAATGAT+GGG | - | chr6_2:52960080-52960099 | Msa0919790:intron | 40.0% | |
| GCGCCTTATCAATCATTTCA+TGG | - | chr6_2:52960137-52960156 | Msa0919790:intron | 40.0% | |
| AAAAATGTTGCTCAGGCTGA+AGG | - | chr6_2:52960248-52960267 | Msa0919790:intron | 40.0% | |
| AAAATGTTGCTCAGGCTGAA+GGG | - | chr6_2:52960249-52960268 | Msa0919790:intron | 40.0% | |
| TGTTGTATGGGACAAAGTGT+TGG | - | chr6_2:52960305-52960324 | Msa0919790:intron | 40.0% | |
| TAGAGATGAGAATGTTGCGT+TGG | - | chr6_2:52960431-52960450 | Msa0919790:intron | 40.0% | |
| AGACGGTAGAAACTTTGCTT+AGG | - | chr6_2:52960529-52960548 | Msa0919790:intron | 40.0% | |
| GAAACTTTGCTTAGGTGGTT+TGG | - | chr6_2:52960537-52960556 | Msa0919790:intron | 40.0% | |
| GAGAGCAGTCAAATCACTAT+AGG | - | chr6_2:52960612-52960631 | Msa0919790:intron | 40.0% | |
| CTTATCTCACTAAGTGAGGT+CGG | + | chr6_2:52960752-52960771 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCTCACTAAGTG+AGG | + | chr6_2:52960756-52960775 | None:intergenic | 40.0% |
| TCACTTAGTGAGATAAGGCT+TGG | - | chr6_2:52960755-52960774 | Msa0919790:intron | 40.0% | |
| CAAATTGCACCACACATTAG+TGG | - | chr6_2:52960888-52960907 | Msa0919790:intron | 40.0% | |
| GTGTGTAGCACAATGAGAAT+AGG | - | chr6_2:52961139-52961158 | Msa0919790:intron | 40.0% | |
| GAATCGTGGAAAATAGCGAT+TGG | - | chr6_2:52961499-52961518 | Msa0919790:intron | 40.0% | |
| GTTGTCTTCGTACAGAAAAG+AGG | - | chr6_2:52961901-52961920 | Msa0919790:intron | 40.0% | |
| !!! | TTGGGTGGTTTTGACATATG+TGG | - | chr6_2:52962036-52962055 | Msa0919790:intron | 40.0% |
| !! | GACTCGTAGAAGCACTATTA+AGG | - | chr6_2:52962063-52962082 | Msa0919790:intron | 40.0% |
| AAGGTAGACTAGATGGAGAA+TGG | - | chr6_2:52962082-52962101 | Msa0919790:intron | 40.0% | |
| TTAGAGAAAGAGGAAGACCA+TGG | - | chr6_2:52962113-52962132 | Msa0919790:intron | 40.0% | |
| GGAAGACCATGGAAAACTAT+AGG | - | chr6_2:52962124-52962143 | Msa0919790:intron | 40.0% | |
| ! | GTTGGCAGATTTTATGCATC+AGG | - | chr6_2:52962508-52962527 | Msa0919790:intron | 40.0% |
| TTTATGCATCAGGTTATGGG+AGG | - | chr6_2:52962518-52962537 | Msa0919790:intron | 40.0% | |
| TGAGATACTATCGTTCTGCT+TGG | - | chr6_2:52962598-52962617 | Msa0919790:intron | 40.0% | |
| GATAATAAGGTGTAGGGACA+AGG | + | chr6_2:52962643-52962662 | None:intergenic | 40.0% | |
| TCCCTACACCTTATTATCCA+GGG | - | chr6_2:52962645-52962664 | Msa0919790:intron | 40.0% | |
| ACCCTGGATAATAAGGTGTA+GGG | + | chr6_2:52962649-52962668 | None:intergenic | 40.0% | |
| TACCCTGGATAATAAGGTGT+AGG | + | chr6_2:52962650-52962669 | None:intergenic | 40.0% | |
| GTCGATTACCCTGGATAATA+AGG | + | chr6_2:52962656-52962675 | None:intergenic | 40.0% | |
| ! | AGTGATTATGCAGCTTTGAC+AGG | - | chr6_2:52962909-52962928 | Msa0919790:intron | 40.0% |
| ! | GTGATTATGCAGCTTTGACA+GGG | - | chr6_2:52962910-52962929 | Msa0919790:intron | 40.0% |
| ACAGGTATTAAGTCTATCCC+TGG | + | chr6_2:52962950-52962969 | None:intergenic | 40.0% | |
| ! | ATTGCTGACGAAGTATTTGC+AGG | - | chr6_2:52963163-52963182 | Msa0919790:intron | 40.0% |
| TCAAAAGACCTTTCGATTGC+TGG | - | chr6_2:52963280-52963299 | Msa0919790:CDS | 40.0% | |
| CTCTAAATCCAGCAATCGAA+AGG | + | chr6_2:52963291-52963310 | None:intergenic | 40.0% | |
| ! | TCGATTGCTGGATTTAGAGT+CGG | - | chr6_2:52963292-52963311 | Msa0919790:CDS | 40.0% |
| GAAGTAACTAACCTCTGTGT+TGG | + | chr6_2:52963391-52963410 | None:intergenic | 40.0% | |
| AGCACACTTGATTCCTAGTT+TGG | + | chr6_2:52963506-52963525 | None:intergenic | 40.0% | |
| ATCAGACCTTATAGCGAGAA+AGG | - | chr6_2:52963571-52963590 | Msa0919790:CDS | 40.0% | |
| AGTTCTCCTTTCTCGCTATA+AGG | + | chr6_2:52963580-52963599 | None:intergenic | 40.0% | |
| !! | AGTGTGATGGTGATGATGGA+TGG | + | chr6_2:52958041-52958060 | None:intergenic | 45.0% |
| GGAGGAAGAAACAAGTGTGA+TGG | + | chr6_2:52958054-52958073 | None:intergenic | 45.0% | |
| GAAAGGAGAGGAGAAGAAGA+AGG | + | chr6_2:52958076-52958095 | None:intergenic | 45.0% | |
| GAGAAAGGAAAGGAAAGGAG+AGG | + | chr6_2:52958088-52958107 | None:intergenic | 45.0% | |
| GTGAGTGAGAGAGAAAGGAA+AGG | + | chr6_2:52958098-52958117 | None:intergenic | 45.0% | |
| GATTGGTATGGTGTGGTTGA+AGG | + | chr6_2:52958127-52958146 | None:intergenic | 45.0% | |
| !! | TCATTGACCCGGGTTTTTAG+TGG | + | chr6_2:52958149-52958168 | None:intergenic | 45.0% |
| !!! | GGGGTTGGTGGGTTTTTTTT+GGG | + | chr6_2:52958178-52958197 | None:intergenic | 45.0% |
| !!! | TGGGGTTGGTGGGTTTTTTT+TGG | + | chr6_2:52958179-52958198 | None:intergenic | 45.0% |
| !!! | TGGGTTTTTTTGGGGTTGGT+GGG | + | chr6_2:52958189-52958208 | None:intergenic | 45.0% |
| !!! | TTGGGTTTTTTTGGGGTTGG+TGG | + | chr6_2:52958190-52958209 | None:intergenic | 45.0% |
| ! | AGTTTCATTCCGGTTCGAGA+GGG | + | chr6_2:52958240-52958259 | None:intergenic | 45.0% |
| CCTTGAACTACAGCTTGAAG+AGG | + | chr6_2:52958270-52958289 | None:intergenic | 45.0% | |
| CCTCTTCAAGCTGTAGTTCA+AGG | - | chr6_2:52958267-52958286 | Msa0919790:CDS | 45.0% | |
| ! | AAGAAGCGTAGGAGAAGAAG+GGG | + | chr6_2:52958397-52958416 | None:intergenic | 45.0% |
| ! | GAAGAAGCGTAGGAGAAGAA+GGG | + | chr6_2:52958398-52958417 | None:intergenic | 45.0% |
| TTCGAACGAGAAGAAGAACG+AGG | + | chr6_2:52958420-52958439 | None:intergenic | 45.0% | |
| CCAAGCTGAATAATCCCATG+AGG | + | chr6_2:52958576-52958595 | None:intergenic | 45.0% | |
| CCTCATGGGATTATTCAGCT+TGG | - | chr6_2:52958573-52958592 | Msa0919790:CDS | 45.0% | |
| AGACGCGCAAGAAACTCATA+GGG | + | chr6_2:52958872-52958891 | None:intergenic | 45.0% | |
| AAGACGCGCAAGAAACTCAT+AGG | + | chr6_2:52958873-52958892 | None:intergenic | 45.0% | |
| TGAATTTCTCGTGCACTCTG+TGG | + | chr6_2:52959150-52959169 | None:intergenic | 45.0% | |
| TCGACCCCAGTATGAAAATG+TGG | - | chr6_2:52959351-52959370 | Msa0919790:intron | 45.0% | |
| ! | GAGTGTCTAAGGGGTTTGTT+TGG | - | chr6_2:52959384-52959403 | Msa0919790:intron | 45.0% |
| GGGTTGCGAGAAAATTGTGA+CGG | - | chr6_2:52959910-52959929 | Msa0919790:intron | 45.0% | |
| !! | ATGGTTGGTGAAGAACTTGG+AGG | - | chr6_2:52960067-52960086 | Msa0919790:intron | 45.0% |
| !! | TGGTTGGTGAAGAACTTGGA+GGG | - | chr6_2:52960068-52960087 | Msa0919790:intron | 45.0% |
| GAACTTGGAGGGATCAATGA+TGG | - | chr6_2:52960079-52960098 | Msa0919790:intron | 45.0% | |
| ACTTGGAGGGATCAATGATG+GGG | - | chr6_2:52960081-52960100 | Msa0919790:intron | 45.0% | |
| !! | GTATGGGACAAAGTGTTGGT+CGG | - | chr6_2:52960309-52960328 | Msa0919790:intron | 45.0% |
| !! | TATGGGACAAAGTGTTGGTC+GGG | - | chr6_2:52960310-52960329 | Msa0919790:intron | 45.0% |
| GAGGAGATGAGATGTTGCAT+TGG | - | chr6_2:52960364-52960383 | Msa0919790:intron | 45.0% | |
| ! | GATGTTGCATTGGAGAGTGT+TGG | - | chr6_2:52960374-52960393 | Msa0919790:intron | 45.0% |
| !! | TTGCATTGGAGAGTGTTGGT+CGG | - | chr6_2:52960378-52960397 | Msa0919790:intron | 45.0% |
| GATGAGAATGTTGCGTTGGA+TGG | - | chr6_2:52960435-52960454 | Msa0919790:intron | 45.0% | |
| CGGTAGAAACTTTGCTTAGG+TGG | - | chr6_2:52960532-52960551 | Msa0919790:intron | 45.0% | |
| CGACCTCACTTAGTGAGATA+AGG | - | chr6_2:52960750-52960769 | Msa0919790:intron | 45.0% | |
| TAGAGGGAATGCATGTGTTG+TGG | - | chr6_2:52960805-52960824 | Msa0919790:intron | 45.0% | |
| ! | GTGTTGTTGATCTTGGATCG+CGG | - | chr6_2:52960849-52960868 | Msa0919790:intron | 45.0% |
| GTCAAATAGCGGTTAGAGCA+AGG | + | chr6_2:52960919-52960938 | None:intergenic | 45.0% | |
| AAAGTGCAGACCACATCACT+TGG | - | chr6_2:52961353-52961372 | Msa0919790:intron | 45.0% | |
| GGAGCAGTGTTGTCAAATAG+TGG | + | chr6_2:52961641-52961660 | None:intergenic | 45.0% | |
| GGGGTCACACAAAACAAGTT+AGG | - | chr6_2:52961945-52961964 | Msa0919790:intron | 45.0% | |
| AAACCACCCAAGACAAGACT+CGG | + | chr6_2:52962027-52962046 | None:intergenic | 45.0% | |
| GCTATAGCGCATCGAACATT+AGG | + | chr6_2:52962183-52962202 | None:intergenic | 45.0% | |
| TGACCCTATCTAGTGCGAAA+AGG | - | chr6_2:52962333-52962352 | Msa0919790:intron | 45.0% | |
| ! | TGCGAAAAGGTTTTTGACGG+TGG | - | chr6_2:52962346-52962365 | Msa0919790:intron | 45.0% |
| ! | TGCTATGATTTTGCAGGCGT+TGG | - | chr6_2:52962490-52962509 | Msa0919790:intron | 45.0% |
| GGACAAGGAATGCATTTCCA+TGG | + | chr6_2:52962628-52962647 | None:intergenic | 45.0% | |
| GTCCCTACACCTTATTATCC+AGG | - | chr6_2:52962644-52962663 | Msa0919790:intron | 45.0% | |
| TCAGTACTTCGACAGTGAAC+AGG | + | chr6_2:52962968-52962987 | None:intergenic | 45.0% | |
| AAACGAGGAGTCAAAGTTCG+CGG | - | chr6_2:52963040-52963059 | Msa0919790:intron | 45.0% | |
| TCGAACCCTTCAAATCCTGT+TGG | - | chr6_2:52963073-52963092 | Msa0919790:intron | 45.0% | |
| GGTGTCAGAATATTGCCAAC+AGG | + | chr6_2:52963091-52963110 | None:intergenic | 45.0% | |
| AGCCGCGTTCATATAGTGTA+CGG | - | chr6_2:52963253-52963272 | Msa0919790:CDS | 45.0% | |
| CTATATCTGCACCAACACAG+AGG | - | chr6_2:52963377-52963396 | Msa0919790:CDS | 45.0% | |
| ACTGGTGCACAATGAGTTTG+TGG | - | chr6_2:52963471-52963490 | Msa0919790:CDS | 45.0% | |
| ATCAGCCCAACAGAACATAC+CGG | + | chr6_2:52963539-52963558 | None:intergenic | 45.0% | |
| TTCTGTTGGGCTGATATGAG+TGG | - | chr6_2:52963544-52963563 | Msa0919790:CDS | 45.0% | |
| !! | ACCATCCTGGTTCTATGCAA+TGG | + | chr6_2:52963663-52963682 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTGTTTTAATTT+TGG | - | chr6_2:52959998-52960017 | Msa0919790:intron | 5.0% |
| !!! | TTTTTTTTTGTTTTAATTTT+GGG | - | chr6_2:52959999-52960018 | Msa0919790:intron | 5.0% |
| !!! | CTTAATTTTAATTATTATTA+CGG | - | chr6_2:52961259-52961278 | Msa0919790:intron | 5.0% |
| !! | TAAAAATATCTTAATTAAAA+AGG | - | chr6_2:52962772-52962791 | Msa0919790:intron | 5.0% |
| !!! | GACCCGGGTTTTTAGTGGAT+TGG | + | chr6_2:52958144-52958163 | None:intergenic | 50.0% |
| TTGGGTTTGGGTCATTGACC+CGG | + | chr6_2:52958160-52958179 | None:intergenic | 50.0% | |
| GGAGAGGATGAAGAAGAAGG+TGG | + | chr6_2:52958219-52958238 | None:intergenic | 50.0% | |
| GAGGGAGAGGATGAAGAAGA+AGG | + | chr6_2:52958222-52958241 | None:intergenic | 50.0% | |
| ! | GAGTTTCATTCCGGTTCGAG+AGG | + | chr6_2:52958241-52958260 | None:intergenic | 50.0% |
| GCTGTAGTTCAAGGTCGCAA+CGG | - | chr6_2:52958276-52958295 | Msa0919790:CDS | 50.0% | |
| TCTCAGGACGACGTCGTTTA+AGG | + | chr6_2:52958356-52958375 | None:intergenic | 50.0% | |
| ! | GGAAGAAGCGTAGGAGAAGA+AGG | + | chr6_2:52958399-52958418 | None:intergenic | 50.0% |
| ! | GAAGAACGAGGAAGAAGCGT+AGG | + | chr6_2:52958408-52958427 | None:intergenic | 50.0% |
| CTCTTGCACCCTATGCAGTT+CGG | + | chr6_2:52958769-52958788 | None:intergenic | 50.0% | |
| GCAGTTCACCCTATGCAGTT+CGG | + | chr6_2:52958978-52958997 | None:intergenic | 50.0% | |
| TGCATAGGGTGAACTGCACA+GGG | - | chr6_2:52958981-52959000 | Msa0919790:intron | 50.0% | |
| AGGGTGCACGAGAAACTCAT+AGG | - | chr6_2:52959000-52959019 | Msa0919790:intron | 50.0% | |
| GGGTGCACGAGAAACTCATA+GGG | - | chr6_2:52959001-52959020 | Msa0919790:intron | 50.0% | |
| TTGCATAGGGTGAACTGCAC+AGG | - | chr6_2:52959056-52959075 | Msa0919790:intron | 50.0% | |
| TGCATAGGGTGAACTGCACA+GGG | - | chr6_2:52958981-52959000 | Msa0919790:intron | 50.0% | |
| CAGACCACATCACTTGGTCA+TGG | - | chr6_2:52961359-52961378 | Msa0919790:intron | 50.0% | |
| GTCTCCATGACCAAGTGATG+TGG | + | chr6_2:52961366-52961385 | None:intergenic | 50.0% | |
| ! | AAGATGGCCGAGTCTTGTCT+TGG | - | chr6_2:52962017-52962036 | Msa0919790:intron | 50.0% |
| ! | AGATGGCCGAGTCTTGTCTT+GGG | - | chr6_2:52962018-52962037 | Msa0919790:intron | 50.0% |
| GCTTTGACAGGGACGTAAGA+TGG | - | chr6_2:52962921-52962940 | Msa0919790:intron | 50.0% | |
| GTATTTGCAGGCTCCACGTA+CGG | - | chr6_2:52963175-52963194 | Msa0919790:CDS | 50.0% | |
| GGCCGTACACTATATGAACG+CGG | + | chr6_2:52963258-52963277 | None:intergenic | 50.0% | |
| GCTTGCCATTGCATAGAACC+AGG | - | chr6_2:52963655-52963674 | Msa0919790:five_prime_UTR | 50.0% | |
| GCCATTGCATAGAACCAGGA+TGG | - | chr6_2:52963659-52963678 | Msa0919790:five_prime_UTR | 50.0% | |
| GGAGAGGAGAAGAAGAAGGG+AGG | + | chr6_2:52958072-52958091 | None:intergenic | 55.0% | |
| TGGGTTTGGGTCATTGACCC+GGG | + | chr6_2:52958159-52958178 | None:intergenic | 55.0% | |
| TCATCCTCTCCCTCTCGAAC+CGG | - | chr6_2:52958228-52958247 | Msa0919790:CDS | 55.0% | |
| ! | GGTCGCAACGGTTTTCTCCT+CGG | - | chr6_2:52958288-52958307 | Msa0919790:CDS | 55.0% |
| CGCGCAAGAAACTCATAGGG+TGG | + | chr6_2:52958869-52958888 | None:intergenic | 55.0% | |
| CTGCATAGGGTGAACTGCAC+AGG | - | chr6_2:52958980-52958999 | Msa0919790:intron | 55.0% | |
| ACAGGGTGCACGAGAAACTC+AGG | - | chr6_2:52958998-52959017 | Msa0919790:intron | 55.0% | |
| CAGGGTGCACGAGAAACTCA+GGG | - | chr6_2:52958999-52959018 | Msa0919790:intron | 55.0% | |
| ACTAAGTGAGGTCGGCTACG+TGG | + | chr6_2:52960744-52960763 | None:intergenic | 55.0% | |
| TCGTTCTGCTTGGCAGACCA+TGG | - | chr6_2:52962608-52962627 | Msa0919790:intron | 55.0% | |
| !! | GAAAGTGCCGTCGATTACCC+TGG | + | chr6_2:52962665-52962684 | None:intergenic | 55.0% |
| AAACTCCTCGCTTCCGTACG+TGG | + | chr6_2:52963191-52963210 | None:intergenic | 55.0% | |
| AAGTGTGCTAAGAGCAGCGC+CGG | - | chr6_2:52963517-52963536 | Msa0919790:CDS | 55.0% | |
| !! | CAGCGCCGGTATGTTCTGTT+GGG | - | chr6_2:52963531-52963550 | Msa0919790:CDS | 55.0% |
| ATGCAATGGCAAGCCGATCC+AGG | + | chr6_2:52963649-52963668 | None:intergenic | 55.0% | |
| ! | CATTCCGGTTCGAGAGGGAG+AGG | + | chr6_2:52958235-52958254 | None:intergenic | 60.0% |
| ! | TGGCCGAGTCTTGTCTTGGG+TGG | - | chr6_2:52962021-52962040 | Msa0919790:intron | 60.0% |
| AGGGACGTAAGATGGCGTCC+AGG | - | chr6_2:52962929-52962948 | Msa0919790:intron | 60.0% | |
| GGGACGTAAGATGGCGTCCA+GGG | - | chr6_2:52962930-52962949 | Msa0919790:intron | 60.0% | |
| !! | GCAGCGCCGGTATGTTCTGT+TGG | - | chr6_2:52963530-52963549 | Msa0919790:CDS | 60.0% |
| AGGCTCCACGTACGGAAGCG+AGG | - | chr6_2:52963183-52963202 | Msa0919790:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 52958008 | 52963777 | 52958008 | ID=Msa0919790;Name=Msa0919790 |
| chr6_2 | mRNA | 52958008 | 52963777 | 52958008 | ID=Msa0919790-mRNA-1;Parent=Msa0919790;Name=Msa0919790-mRNA-1;_AED=0.04;_eAED=0.04;_QI=157|0.25|0.6|0.8|1|1|5|0|540 |
| chr6_2 | exon | 52958008 | 52958854 | 52958008 | ID=Msa0919790-mRNA-1:exon:7895;Parent=Msa0919790-mRNA-1 |
| chr6_2 | exon | 52959119 | 52959279 | 52959119 | ID=Msa0919790-mRNA-1:exon:7894;Parent=Msa0919790-mRNA-1 |
| chr6_2 | exon | 52961607 | 52961741 | 52961607 | ID=Msa0919790-mRNA-1:exon:7893;Parent=Msa0919790-mRNA-1 |
| chr6_2 | exon | 52962689 | 52962721 | 52962689 | ID=Msa0919790-mRNA-1:exon:7892;Parent=Msa0919790-mRNA-1 |
| chr6_2 | exon | 52963174 | 52963777 | 52963174 | ID=Msa0919790-mRNA-1:exon:7891;Parent=Msa0919790-mRNA-1 |
| chr6_2 | five_prime_UTR | 52963621 | 52963777 | 52963621 | ID=Msa0919790-mRNA-1:five_prime_utr;Parent=Msa0919790-mRNA-1 |
| chr6_2 | CDS | 52963174 | 52963620 | 52963174 | ID=Msa0919790-mRNA-1:cds;Parent=Msa0919790-mRNA-1 |
| chr6_2 | CDS | 52962689 | 52962721 | 52962689 | ID=Msa0919790-mRNA-1:cds;Parent=Msa0919790-mRNA-1 |
| chr6_2 | CDS | 52961607 | 52961741 | 52961607 | ID=Msa0919790-mRNA-1:cds;Parent=Msa0919790-mRNA-1 |
| chr6_2 | CDS | 52959119 | 52959279 | 52959119 | ID=Msa0919790-mRNA-1:cds;Parent=Msa0919790-mRNA-1 |
| chr6_2 | CDS | 52958008 | 52958854 | 52958008 | ID=Msa0919790-mRNA-1:cds;Parent=Msa0919790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
