AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0390350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390350 MtrunA17_Chr1g0175321 97.288 295 8 0 1 295 3 297 0.0 588
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390350 AT2G42130.4 67.626 278 83 4 23 295 24 299 8.31e-132 376
Msa0390350 AT3G58010.1 68.443 244 74 2 39 280 48 290 1.53e-125 360
Msa0390350 AT3G58010.2 68.443 244 74 2 39 280 48 290 1.53e-125 360
Msa0390350 AT2G42130.3 66.300 273 67 4 46 295 1 271 1.06e-124 357
Msa0390350 AT2G42130.2 70.040 247 68 3 23 264 24 269 2.80e-121 348
Msa0390350 AT2G42130.1 66.807 238 73 3 23 255 24 260 5.82e-109 317
Msa0390350 AT2G42130.5 71.078 204 58 1 92 295 2 204 2.79e-105 305

Find 84 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAACAGCCATTGAAAAT+TGG 0.215694 3_2:-1145507 None:intergenic
CAATCCCTTCATCTTCTTCA+TGG 0.263944 3_2:+1145578 Msa0390350:CDS
TTTACTTAACACCTCGAATA+AGG 0.269104 3_2:-1149406 None:intergenic
CATAGGGAATTTAAAGTAAC+AGG 0.273960 3_2:-1149432 None:intergenic
TTCTTAGTCTCTTACGTTGT+GGG 0.278150 3_2:-1146783 None:intergenic
ATGTTTCTGCAGATACTTAC+TGG 0.303737 3_2:+1149627 Msa0390350:three_prime_UTR
TGATACTAAAACATGAAATA+TGG 0.307908 3_2:-1149501 None:intergenic
TGGTTTGGTCCCGGCTCTCC+AGG 0.323449 3_2:+1146903 Msa0390350:CDS
TCGAGTCTCGTTAAAACTTC+TGG 0.337043 3_2:-1149304 None:intergenic
CGATGGAACTTTGAGTGGTT+TGG 0.345387 3_2:+1146888 Msa0390350:CDS
CGATGCATCGCCGTCATCCC+TGG 0.349723 3_2:+1149324 Msa0390350:CDS
TGGTTCTGATGCAGATAATA+AGG 0.361190 3_2:+1149266 Msa0390350:intron
AACACCTAGCTTTCATAATC+TGG 0.372388 3_2:-1149358 None:intergenic
TACGTTGTGGGCCGAGGTGT+TGG 0.377460 3_2:-1146771 None:intergenic
GACAAATTAGCTAAACTTGA+AGG 0.384219 3_2:-1147093 None:intergenic
AGAGTACCAGATCAGCTTAA+AGG 0.398637 3_2:+1147634 Msa0390350:CDS
GATGTGAATGAAAGGATAAC+TGG 0.412353 3_2:+1146732 Msa0390350:CDS
TGCTGCTTATGCTAAGGAAA+TGG 0.412492 3_2:+1145678 Msa0390350:CDS
GTCTCTTACGTTGTGGGCCG+AGG 0.413534 3_2:-1146777 None:intergenic
CGCAAACAACCCTGGAGAGC+CGG 0.413785 3_2:-1146913 None:intergenic
ATGAAAGCTAGGTGTTTGTA+TGG 0.422518 3_2:+1149365 Msa0390350:exon
AACTTTGAGTGGTTTGGTCC+CGG 0.437249 3_2:+1146894 Msa0390350:CDS
CTCCAGGGTTGTTTGCGGCT+AGG 0.445478 3_2:+1146919 Msa0390350:CDS
TGGCCCCTCCACAGTTAACT+TGG 0.446873 3_2:-1147551 None:intergenic
TACAGGTCACCCTTTCTAGA+AGG 0.454407 3_2:+1146864 Msa0390350:intron
AGTGCACCTTTAAGCTGATC+TGG 0.469556 3_2:-1147640 None:intergenic
TATTGTGTCACCAACAGTCT+TGG 0.471270 3_2:+1147606 Msa0390350:CDS
GCAAACAACCCTGGAGAGCC+GGG 0.475524 3_2:-1146912 None:intergenic
GCTTAAAGGTGCACTTGGGC+AGG 0.488898 3_2:+1147648 Msa0390350:CDS
AAGTGTTTGTTGTTCAACTT+AGG 0.490261 3_2:-1145428 None:intergenic
ATGGATGTCTTTATCAAGGA+TGG 0.497103 3_2:+1147120 Msa0390350:CDS
GGTTTGGTCCCGGCTCTCCA+GGG 0.497726 3_2:+1146904 Msa0390350:CDS
TTACGTGATGCTCTCGCCGA+TGG 0.498253 3_2:+1147703 Msa0390350:CDS
TACTCCTCTTTCATTCTAAG+TGG 0.499661 3_2:-1147571 None:intergenic
GCGTGGTTGTTGCAGAGCTA+TGG 0.499922 3_2:+1145633 Msa0390350:CDS
TTCCATCGACCTTCTAGAAA+GGG 0.507609 3_2:-1146873 None:intergenic
AAGTGTTGTGTTGTGTGTGT+GGG 0.507655 3_2:-1145404 None:intergenic
TGAAACTTCTATATTCACAT+AGG 0.508120 3_2:-1149449 None:intergenic
TGAAAGAGGAGTATGTGGAA+GGG 0.508535 3_2:+1147581 Msa0390350:CDS
GATCAGCTTAAAGGTGCACT+TGG 0.509335 3_2:+1147643 Msa0390350:CDS
GAAGCGATTCTTTAGCAGAA+AGG 0.509807 3_2:-1145705 None:intergenic
GTTCCATCGACCTTCTAGAA+AGG 0.510788 3_2:-1146874 None:intergenic
GAAACTTCTATATTCACATA+GGG 0.514617 3_2:-1149448 None:intergenic
ATGAAAGAGGAGTATGTGGA+AGG 0.518572 3_2:+1147580 Msa0390350:CDS
GCTATGGTTCAAGTTCAAAC+TGG 0.521173 3_2:+1145649 Msa0390350:CDS
CGGCTCTCCAGGGTTGTTTG+CGG 0.524440 3_2:+1146914 Msa0390350:CDS
CAGATAATAAGGAACACAGC+TGG 0.524577 3_2:+1149277 Msa0390350:intron
ACTTTCCATGAAGAAGATGA+AGG 0.524783 3_2:-1145583 None:intergenic
AATCTGGACTTGATTCTCCC+AGG 0.529092 3_2:-1149342 None:intergenic
AAGTCCAGATTATGAAAGCT+AGG 0.531868 3_2:+1149354 Msa0390350:CDS
AGTTACTTCTCAACATGGAA+TGG 0.534320 3_2:-1145456 None:intergenic
TCAACCAAGTTAACTGTGGA+GGG 0.536332 3_2:+1147547 Msa0390350:CDS
ATTTCCTTAGCATAAGCAGC+AGG 0.537111 3_2:-1145676 None:intergenic
ATCCTAGCCGCAAACAACCC+TGG 0.540466 3_2:-1146921 None:intergenic
AAAGAATTGATGTGAATGAA+AGG 0.540601 3_2:+1146724 Msa0390350:CDS
TAAGTGTTGTGTTGTGTGTG+TGG 0.543031 3_2:-1145405 None:intergenic
CTTGATTCTCCCAGGGATGA+CGG 0.547658 3_2:-1149334 None:intergenic
GATGCATCGCCGTCATCCCT+GGG 0.548574 3_2:+1149325 Msa0390350:CDS
TAGAATGAAAGAGGAGTATG+TGG 0.549259 3_2:+1147576 Msa0390350:CDS
TACGTGATGCTCTCGCCGAT+GGG 0.553971 3_2:+1147704 Msa0390350:CDS
ATCTGGACTTGATTCTCCCA+GGG 0.556575 3_2:-1149341 None:intergenic
CACCCTTTCTAGAAGGTCGA+TGG 0.556922 3_2:+1146871 Msa0390350:CDS
ACTTCTCAACATGGAATGGA+AGG 0.558011 3_2:-1145452 None:intergenic
CTTTCCATGAAGAAGATGAA+GGG 0.562335 3_2:-1145582 None:intergenic
AGAGCATCACGTAAAGGTAC+GGG 0.563086 3_2:-1147694 None:intergenic
CTCAACCAAGTTAACTGTGG+AGG 0.564278 3_2:+1147546 Msa0390350:CDS
GAGAGCATCACGTAAAGGTA+CGG 0.569225 3_2:-1147695 None:intergenic
AAGGTCGATGGAACTTTGAG+TGG 0.570543 3_2:+1146883 Msa0390350:CDS
AGATAATAAGGAACACAGCT+GGG 0.572812 3_2:+1149278 Msa0390350:intron
CATGATTTCTTATCTCGATG+AGG 0.578981 3_2:+1148363 Msa0390350:CDS
TCGGCGAGAGCATCACGTAA+AGG 0.589648 3_2:-1147700 None:intergenic
ACTCTGTCTTCCAAGACTGT+TGG 0.591239 3_2:-1147616 None:intergenic
GGGGCCACTTAGAATGAAAG+AGG 0.591481 3_2:+1147567 Msa0390350:CDS
CGCATCACGTGGCAGAAGCG+TGG 0.611910 3_2:+1145616 Msa0390350:CDS
TTTCAGTTTAAGGATGCAGG+TGG 0.612143 3_2:+1146663 Msa0390350:intron
TGCACCTGCTGCTTATGCTA+AGG 0.621082 3_2:+1145672 Msa0390350:CDS
TTTGTGATTGTTGAAATACA+AGG 0.627714 3_2:-1145550 None:intergenic
ATCAGCTTAAAGGTGCACTT+GGG 0.627941 3_2:+1147644 Msa0390350:CDS
CAACCAAGTTAACTGTGGAG+GGG 0.634924 3_2:+1147548 Msa0390350:CDS
ACTTAACACCTCGAATAAGG+AGG 0.635193 3_2:-1149403 None:intergenic
TCTCTCAACCAAGTTAACTG+TGG 0.636429 3_2:+1147543 Msa0390350:CDS
AAAGGATAACTGGTCTTGAG+CGG 0.638722 3_2:+1146742 Msa0390350:CDS
TTTCAACTTCACGCATCACG+TGG 0.646833 3_2:+1145605 Msa0390350:CDS
AGCGGCTCAATCCAACACCT+CGG 0.670774 3_2:+1146760 Msa0390350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACAAAAATTAAAACAAT+GGG - chr3_2:1145789-1145808 None:intergenic 10.0%
!! ATTAACAAAAATTAAAACAA+TGG - chr3_2:1145790-1145809 None:intergenic 10.0%
!!! TTTGTTAATTTATTTAGTTT+TGG + chr3_2:1145801-1145820 Msa0390350:intron 10.0%
!! TTATAATTGAAAAAACTTAT+AGG - chr3_2:1147399-1147418 None:intergenic 10.0%
!!! AATTTTAAACAAAATATGAA+AGG - chr3_2:1147486-1147505 None:intergenic 10.0%
!! ATATAAAATCTGTTAAATAT+TGG + chr3_2:1147809-1147828 Msa0390350:intron 10.0%
!!! ATTTTTCTTTTCATTTTAAT+AGG + chr3_2:1149178-1149197 Msa0390350:intron 10.0%
!!! TTTTTTTTTTATTTCACTAT+TGG - chr3_2:1149577-1149596 None:intergenic 10.0%
!! TAACAAAAATTAAAACAATG+GGG - chr3_2:1145788-1145807 None:intergenic 15.0%
!!! ATAATTGATTTTGATATGTT+TGG + chr3_2:1145901-1145920 Msa0390350:intron 15.0%
!!! AAACACATTATTTTTAAACT+CGG + chr3_2:1147161-1147180 Msa0390350:CDS 15.0%
!!! GTTTTATATATTTCATGAAA+TGG + chr3_2:1147963-1147982 Msa0390350:intron 15.0%
!! TCTATAATTATTTACTGAAT+TGG - chr3_2:1148405-1148424 None:intergenic 15.0%
!!! TGCTTAATTTTTTGGATTAT+TGG + chr3_2:1145758-1145777 Msa0390350:intron 20.0%
!! AATTTACTTAAGTGTATGTT+TGG + chr3_2:1145839-1145858 Msa0390350:intron 20.0%
!! ATATACATTCATGTAAAAGT+GGG - chr3_2:1146135-1146154 None:intergenic 20.0%
!! TATATACATTCATGTAAAAG+TGG - chr3_2:1146136-1146155 None:intergenic 20.0%
!! TGATTAAATTATTGCATGTT+TGG - chr3_2:1146249-1146268 None:intergenic 20.0%
!! ATTGAAACCAATTTATACAA+GGG + chr3_2:1146271-1146290 Msa0390350:intron 20.0%
!! ATTATAACCCTTGTATAAAT+TGG - chr3_2:1146281-1146300 None:intergenic 20.0%
!!! AACTTCATTTTATTCTTGTT+GGG - chr3_2:1146563-1146582 None:intergenic 20.0%
!! TTATTCAAAAAGCTTAGAAA+TGG - chr3_2:1146812-1146831 None:intergenic 20.0%
!!! TTTAGCTAATTTGTCAAAAA+TGG + chr3_2:1147101-1147120 Msa0390350:CDS 20.0%
!! TGAAAATCATTATGTAAAAG+AGG - chr3_2:1147256-1147275 None:intergenic 20.0%
!!! TGAAATAATTTTACTTTCTG+TGG - chr3_2:1147293-1147312 None:intergenic 20.0%
!! AAATATGTCATAACAAGAAA+GGG - chr3_2:1147316-1147335 None:intergenic 20.0%
!!! TAAGAAATAATGTACACTTT+TGG + chr3_2:1148174-1148193 Msa0390350:intron 20.0%
!!! TTTTCAACAACTTCAAAATA+TGG + chr3_2:1148767-1148786 Msa0390350:intron 20.0%
!!! TTCAAATTGATTTTAGTAAG+TGG - chr3_2:1148949-1148968 None:intergenic 20.0%
!!! CGGCAAATATATAATTTTAT+TGG - chr3_2:1149051-1149070 None:intergenic 20.0%
!! GAAAAAAATTGAAAAGCAAT+AGG + chr3_2:1149140-1149159 Msa0390350:intron 20.0%
!! GAGATAATTATAGGTAAAAA+TGG - chr3_2:1149216-1149235 None:intergenic 20.0%
!!! AAATATGGTTTTGTAAGAAA+TGG - chr3_2:1149489-1149508 None:intergenic 20.0%
!! TGATACTAAAACATGAAATA+TGG - chr3_2:1149504-1149523 None:intergenic 20.0%
!!! TTTTTTATTTCACTATTGGA+TGG - chr3_2:1149573-1149592 None:intergenic 20.0%
! TTTGTGATTGTTGAAATACA+AGG - chr3_2:1145553-1145572 None:intergenic 25.0%
!! TCCTTTTCTGCTTAATTTTT+TGG + chr3_2:1145750-1145769 Msa0390350:intron 25.0%
! TCCAAAAAATTAAGCAGAAA+AGG - chr3_2:1145754-1145773 None:intergenic 25.0%
!! CTTGTATAAATTGGTTTCAA+TGG - chr3_2:1146272-1146291 None:intergenic 25.0%
! CATTGAAACCAATTTATACA+AGG + chr3_2:1146270-1146289 Msa0390350:intron 25.0%
! AATAACAGTTACAAGTAATG+AGG + chr3_2:1146319-1146338 Msa0390350:intron 25.0%
! ATTGTGATATGATAGCTAAA+AGG + chr3_2:1146343-1146362 Msa0390350:intron 25.0%
!! CAACTTCATTTTATTCTTGT+TGG - chr3_2:1146564-1146583 None:intergenic 25.0%
! AAAGAATTGATGTGAATGAA+AGG + chr3_2:1146724-1146743 Msa0390350:CDS 25.0%
!! AGCTTTTTGAATAAGATGTA+AGG + chr3_2:1146818-1146837 Msa0390350:intron 25.0%
!! GCTTTTTGAATAAGATGTAA+GGG + chr3_2:1146819-1146838 Msa0390350:intron 25.0%
! AAAAATGGATGTCTTTATCA+AGG + chr3_2:1147116-1147135 Msa0390350:CDS 25.0%
! CAAATATGTCATAACAAGAA+AGG - chr3_2:1147317-1147336 None:intergenic 25.0%
! CATAACTACCTGTTAAAAAA+AGG - chr3_2:1147352-1147371 None:intergenic 25.0%
!!! CTTTTTTTAACAGGTAGTTA+TGG + chr3_2:1147350-1147369 Msa0390350:intron 25.0%
! ATTGAAAAAACTTATAGGCA+TGG - chr3_2:1147394-1147413 None:intergenic 25.0%
! AATTCTCATACACATATATG+TGG + chr3_2:1148034-1148053 Msa0390350:intron 25.0%
! ATTCTCATACACATATATGT+GGG + chr3_2:1148035-1148054 Msa0390350:intron 25.0%
! TGTAAATATCTACCAACATA+AGG - chr3_2:1148137-1148156 None:intergenic 25.0%
! AACAACTTCAAAATATGGAA+GGG + chr3_2:1148772-1148791 Msa0390350:intron 25.0%
! ATAAATTTAGGAGGAAATCT+AGG - chr3_2:1148983-1149002 None:intergenic 25.0%
! TTTCATCCAGCTATAAATTT+AGG - chr3_2:1148995-1149014 None:intergenic 25.0%
!! CCATGATTTGAGATAATTAT+AGG - chr3_2:1149225-1149244 None:intergenic 25.0%
! CCTATAATTATCTCAAATCA+TGG + chr3_2:1149222-1149241 Msa0390350:intron 25.0%
! GAAACTTCTATATTCACATA+GGG - chr3_2:1149451-1149470 None:intergenic 25.0%
! TGAAACTTCTATATTCACAT+AGG - chr3_2:1149452-1149471 None:intergenic 25.0%
!! TTTTAGTATCACAACAAAAG+TGG + chr3_2:1149513-1149532 Msa0390350:three_prime_UTR 25.0%
!! AAGTGTTTGTTGTTCAACTT+AGG - chr3_2:1145431-1145450 None:intergenic 30.0%
TAGTTAGTTACTTCTCAACA+TGG - chr3_2:1145464-1145483 None:intergenic 30.0%
! GAACTGAAACCAATTTTCAA+TGG + chr3_2:1145498-1145517 Msa0390350:exon 30.0%
!! ATTTTGATGAACTATGAGTG+TGG + chr3_2:1145953-1145972 Msa0390350:intron 30.0%
CGAGTTAGAATCAGTTATAA+AGG - chr3_2:1146022-1146041 None:intergenic 30.0%
CAATTGTAGAAGCAAAATGA+CGG - chr3_2:1146086-1146105 None:intergenic 30.0%
ACATTCTACTCACTTTCAAT+CGG + chr3_2:1146171-1146190 Msa0390350:intron 30.0%
GAACTAACTACACAAATTGT+TGG + chr3_2:1146365-1146384 Msa0390350:intron 30.0%
TTCAAAAAGCTTAGAAATGG+AGG - chr3_2:1146809-1146828 None:intergenic 30.0%
AACAATCCGAAGAAAAACTT+CGG - chr3_2:1146990-1147009 None:intergenic 30.0%
CGAGATGAAGCTAAATTTAA+GGG - chr3_2:1147024-1147043 None:intergenic 30.0%
CTGCAAATATATAAAGCACA+GGG - chr3_2:1147066-1147085 None:intergenic 30.0%
GACAAATTAGCTAAACTTGA+AGG - chr3_2:1147096-1147115 None:intergenic 30.0%
AACTACCTGTTAAAAAAAGG+TGG - chr3_2:1147349-1147368 None:intergenic 30.0%
!! TGAAATGGATTTTCTCTAGT+TGG + chr3_2:1147978-1147997 Msa0390350:intron 30.0%
!!! CCACAAGTTACTTTCTTTTT+TGG - chr3_2:1148067-1148086 None:intergenic 30.0%
CCAAAAAAGAAAGTAACTTG+TGG + chr3_2:1148064-1148083 Msa0390350:intron 30.0%
! TGATGTCATTTCATGTTTGA+AGG + chr3_2:1148319-1148338 Msa0390350:intron 30.0%
TCAAGTTAGATTCATATGCA+TGG - chr3_2:1148460-1148479 None:intergenic 30.0%
TAACTGTTGCATTATCAGAT+TGG + chr3_2:1148543-1148562 Msa0390350:intron 30.0%
CAACAACTTCAAAATATGGA+AGG + chr3_2:1148771-1148790 Msa0390350:intron 30.0%
ATGTGAGAATGATAGAATTG+AGG - chr3_2:1148882-1148901 None:intergenic 30.0%
TTTCCTCCTAAATTTATAGC+TGG + chr3_2:1148986-1149005 Msa0390350:intron 30.0%
AGCATGTATAAGAGAATTGA+GGG - chr3_2:1149091-1149110 None:intergenic 30.0%
TAGCATGTATAAGAGAATTG+AGG - chr3_2:1149092-1149111 None:intergenic 30.0%
TCAATTCTCTTATACATGCT+AGG + chr3_2:1149091-1149110 Msa0390350:intron 30.0%
TCTCAAATCATGGTAATATC+TGG + chr3_2:1149232-1149251 Msa0390350:intron 30.0%
! AATATCTGGAATGATTATGC+TGG + chr3_2:1149246-1149265 Msa0390350:intron 30.0%
! ATATTTTACCTCCTTATTCG+AGG + chr3_2:1149395-1149414 Msa0390350:three_prime_UTR 30.0%
TTTACTTAACACCTCGAATA+AGG - chr3_2:1149409-1149428 None:intergenic 30.0%
! CATAGGGAATTTAAAGTAAC+AGG - chr3_2:1149435-1149454 None:intergenic 30.0%
AGTTACTTCTCAACATGGAA+TGG - chr3_2:1145459-1145478 None:intergenic 35.0%
CAGAAACAGCCATTGAAAAT+TGG - chr3_2:1145510-1145529 None:intergenic 35.0%
CTTTCCATGAAGAAGATGAA+GGG - chr3_2:1145585-1145604 None:intergenic 35.0%
ACTTTCCATGAAGAAGATGA+AGG - chr3_2:1145586-1145605 None:intergenic 35.0%
TAAGCAGAAAAGGAAATGAG+TGG - chr3_2:1145744-1145763 None:intergenic 35.0%
!! TTTGGTTCTACTCTAAGATG+AGG + chr3_2:1145857-1145876 Msa0390350:intron 35.0%
! TGAGGCAAAATTGATTTCAG+AGG + chr3_2:1145875-1145894 Msa0390350:intron 35.0%
ACATTCATGTAAAAGTGGGT+TGG - chr3_2:1146131-1146150 None:intergenic 35.0%
! ATTGACTTAGAACGAGCTAA+AGG + chr3_2:1146413-1146432 Msa0390350:intron 35.0%
!! CCATAAAGCATCGAGTTTAT+GGG - chr3_2:1146459-1146478 None:intergenic 35.0%
!! ACCATAAAGCATCGAGTTTA+TGG - chr3_2:1146460-1146479 None:intergenic 35.0%
! AACTCGATGCTTTATGGTTT+TGG + chr3_2:1146462-1146481 Msa0390350:intron 35.0%
! ACTCGATGCTTTATGGTTTT+GGG + chr3_2:1146463-1146482 Msa0390350:intron 35.0%
AACAACAATCGAGTAAAGAC+CGG - chr3_2:1146521-1146540 None:intergenic 35.0%
AGTGAATTTGAGTACAAGCT+TGG - chr3_2:1146627-1146646 None:intergenic 35.0%
GTACTCAAATTCACTTACTC+TGG + chr3_2:1146632-1146651 Msa0390350:intron 35.0%
! GGAGACATCTTTTCAGTTTA+AGG + chr3_2:1146653-1146672 Msa0390350:intron 35.0%
! TCTTTTCAGTTTAAGGATGC+AGG + chr3_2:1146660-1146679 Msa0390350:intron 35.0%
GATGTGAATGAAAGGATAAC+TGG + chr3_2:1146732-1146751 Msa0390350:CDS 35.0%
TTCTTAGTCTCTTACGTTGT+GGG - chr3_2:1146786-1146805 None:intergenic 35.0%
TTCATGCTCTTTATTGCTAC+AGG + chr3_2:1146847-1146866 Msa0390350:intron 35.0%
! GTTAGTCCGAAGTTTTTCTT+CGG + chr3_2:1146981-1147000 Msa0390350:intron 35.0%
GCGAGATGAAGCTAAATTTA+AGG - chr3_2:1147025-1147044 None:intergenic 35.0%
CCTGCAAATATATAAAGCAC+AGG - chr3_2:1147067-1147086 None:intergenic 35.0%
CCTGTGCTTTATATATTTGC+AGG + chr3_2:1147064-1147083 Msa0390350:intron 35.0%
ATGGATGTCTTTATCAAGGA+TGG + chr3_2:1147120-1147139 Msa0390350:CDS 35.0%
!!! AGTGTCCACCTTTTTTTAAC+AGG + chr3_2:1147341-1147360 Msa0390350:intron 35.0%
AGGTACAACAAACTCTTTCT+AGG - chr3_2:1147466-1147485 None:intergenic 35.0%
TACTCCTCTTTCATTCTAAG+TGG - chr3_2:1147574-1147593 None:intergenic 35.0%
! TAGAATGAAAGAGGAGTATG+TGG + chr3_2:1147576-1147595 Msa0390350:CDS 35.0%
GAGGTGAATATAGAAATCAG+TGG - chr3_2:1147754-1147773 None:intergenic 35.0%
! AAGTCAGAGAACATTTTCAG+AGG - chr3_2:1147773-1147792 None:intergenic 35.0%
CACGAAACAACAGAATAAAC+AGG - chr3_2:1147862-1147881 None:intergenic 35.0%
ATATCTAGCAATTTCAAGCC+AGG - chr3_2:1148095-1148114 None:intergenic 35.0%
CAGTAAGAAATGCCTTATGT+TGG + chr3_2:1148122-1148141 Msa0390350:intron 35.0%
! TGTCATTTCATGTTTGAAGG+TGG + chr3_2:1148322-1148341 Msa0390350:intron 35.0%
CATGATTTCTTATCTCGATG+AGG + chr3_2:1148363-1148382 Msa0390350:CDS 35.0%
ATATGCATGGTAATCTACGA+AGG - chr3_2:1148447-1148466 None:intergenic 35.0%
TGCATTATCAGATTGGAATG+TGG + chr3_2:1148550-1148569 Msa0390350:intron 35.0%
! GTAAGACTTTCTGGAAATCA+AGG - chr3_2:1148641-1148660 None:intergenic 35.0%
TGAGAATGAAAAATCGCCTA+GGG + chr3_2:1148833-1148852 Msa0390350:intron 35.0%
AAAATCGCCTAGGGTTTAAT+AGG + chr3_2:1148842-1148861 Msa0390350:intron 35.0%
CATCCAGCTATAAATTTAGG+AGG - chr3_2:1148992-1149011 None:intergenic 35.0%
TATAGCTGGATGAAAGTTCT+AGG + chr3_2:1149000-1149019 Msa0390350:intron 35.0%
ATGCTAGGTTTGAATGACAT+GGG + chr3_2:1149106-1149125 Msa0390350:intron 35.0%
!! TGGTTCTGATGCAGATAATA+AGG + chr3_2:1149266-1149285 Msa0390350:intron 35.0%
AGATAATAAGGAACACAGCT+GGG + chr3_2:1149278-1149297 Msa0390350:intron 35.0%
AAGTCCAGATTATGAAAGCT+AGG + chr3_2:1149354-1149373 Msa0390350:CDS 35.0%
! AACACCTAGCTTTCATAATC+TGG - chr3_2:1149361-1149380 None:intergenic 35.0%
ATGAAAGCTAGGTGTTTGTA+TGG + chr3_2:1149365-1149384 Msa0390350:exon 35.0%
! ATGTTTCTGCAGATACTTAC+TGG + chr3_2:1149627-1149646 Msa0390350:three_prime_UTR 35.0%
! AAGTGTTGTGTTGTGTGTGT+GGG - chr3_2:1145407-1145426 None:intergenic 40.0%
! TAAGTGTTGTGTTGTGTGTG+TGG - chr3_2:1145408-1145427 None:intergenic 40.0%
ACTTCTCAACATGGAATGGA+AGG - chr3_2:1145455-1145474 None:intergenic 40.0%
CAATCCCTTCATCTTCTTCA+TGG + chr3_2:1145578-1145597 Msa0390350:CDS 40.0%
! GCTATGGTTCAAGTTCAAAC+TGG + chr3_2:1145649-1145668 Msa0390350:CDS 40.0%
ATTTCCTTAGCATAAGCAGC+AGG - chr3_2:1145679-1145698 None:intergenic 40.0%
! TGCTGCTTATGCTAAGGAAA+TGG + chr3_2:1145678-1145697 Msa0390350:CDS 40.0%
GAAGCGATTCTTTAGCAGAA+AGG - chr3_2:1145708-1145727 None:intergenic 40.0%
ATGAGTGTGGTTAAGCATCA+AGG + chr3_2:1145966-1145985 Msa0390350:intron 40.0%
!! TCATGTAAAAGTGGGTTGGA+TGG - chr3_2:1146127-1146146 None:intergenic 40.0%
ACTTAGAACGAGCTAAAGGA+AGG + chr3_2:1146417-1146436 Msa0390350:intron 40.0%
CCCATAAACTCGATGCTTTA+TGG + chr3_2:1146456-1146475 Msa0390350:intron 40.0%
TATTCTTGTTGGGAAGTCCA+GGG - chr3_2:1146553-1146572 None:intergenic 40.0%
TTATTCTTGTTGGGAAGTCC+AGG - chr3_2:1146554-1146573 None:intergenic 40.0%
TTTCAGTTTAAGGATGCAGG+TGG + chr3_2:1146663-1146682 Msa0390350:intron 40.0%
!!! GTTTTGAGAGCTTAGTCTCT+GGG + chr3_2:1146685-1146704 Msa0390350:CDS 40.0%
!! AAAGGATAACTGGTCTTGAG+CGG + chr3_2:1146742-1146761 Msa0390350:CDS 40.0%
GTTCTTAGTCTCTTACGTTG+TGG - chr3_2:1146787-1146806 None:intergenic 40.0%
! TTCCATCGACCTTCTAGAAA+GGG - chr3_2:1146876-1146895 None:intergenic 40.0%
!! AGGGAAGCATTGTAACTCAA+AGG - chr3_2:1147047-1147066 None:intergenic 40.0%
TCTCTCAACCAAGTTAACTG+TGG + chr3_2:1147543-1147562 Msa0390350:CDS 40.0%
TCAACCAAGTTAACTGTGGA+GGG + chr3_2:1147547-1147566 Msa0390350:CDS 40.0%
! ATGAAAGAGGAGTATGTGGA+AGG + chr3_2:1147580-1147599 Msa0390350:CDS 40.0%
! TGAAAGAGGAGTATGTGGAA+GGG + chr3_2:1147581-1147600 Msa0390350:CDS 40.0%
TATTGTGTCACCAACAGTCT+TGG + chr3_2:1147606-1147625 Msa0390350:CDS 40.0%
! AGAGTACCAGATCAGCTTAA+AGG + chr3_2:1147634-1147653 Msa0390350:CDS 40.0%
! ATCAGCTTAAAGGTGCACTT+GGG + chr3_2:1147644-1147663 Msa0390350:CDS 40.0%
! TAGTGGAACTTTTAGCCCAT+CGG - chr3_2:1147722-1147741 None:intergenic 40.0%
ATCAGTGGTAGCTTACTTAG+TGG - chr3_2:1147739-1147758 None:intergenic 40.0%
GTTCTCTGACTTAACTGTTC+TGG + chr3_2:1147781-1147800 Msa0390350:intron 40.0%
ACCATGCGCTGCTAATATTA+GGG + chr3_2:1147836-1147855 Msa0390350:intron 40.0%
AAATATGTGCGCACAAAGAC+AGG + chr3_2:1148224-1148243 Msa0390350:intron 40.0%
TGCACTAAGAAACGCATGTA+TGG + chr3_2:1148499-1148518 Msa0390350:intron 40.0%
! TATGGTTGCAACTGGTGTTT+TGG + chr3_2:1148517-1148536 Msa0390350:intron 40.0%
! GTGATGTACGTTACACCTTT+TGG + chr3_2:1148599-1148618 Msa0390350:intron 40.0%
! TTACACCTTTTGGTCATGCT+GGG + chr3_2:1148609-1148628 Msa0390350:intron 40.0%
TCTTACACTGTCACGTGTAA+AGG + chr3_2:1148655-1148674 Msa0390350:intron 40.0%
CAGAAAGTGAAACTACTCAG+AGG - chr3_2:1148740-1148759 None:intergenic 40.0%
CTCTGAGTAGTTTCACTTTC+TGG + chr3_2:1148738-1148757 Msa0390350:intron 40.0%
! TTTTCCTCACTGTCACAGTT+TGG + chr3_2:1148799-1148818 Msa0390350:intron 40.0%
CTGAGAATGAAAAATCGCCT+AGG + chr3_2:1148832-1148851 Msa0390350:intron 40.0%
TAGGGTTTAATAGGTCTCGA+GGG + chr3_2:1148851-1148870 Msa0390350:intron 40.0%
GGGCAACAACAGATTTACAT+CGG - chr3_2:1149071-1149090 None:intergenic 40.0%
CATGCTAGGTTTGAATGACA+TGG + chr3_2:1149105-1149124 Msa0390350:intron 40.0%
GTTTGAATGACATGGGAACA+TGG + chr3_2:1149113-1149132 Msa0390350:intron 40.0%
AATGACATGGGAACATGGAA+AGG + chr3_2:1149118-1149137 Msa0390350:intron 40.0%
CAGATAATAAGGAACACAGC+TGG + chr3_2:1149277-1149296 Msa0390350:intron 40.0%
TCGAGTCTCGTTAAAACTTC+TGG - chr3_2:1149307-1149326 None:intergenic 40.0%
ACTTAACACCTCGAATAAGG+AGG - chr3_2:1149406-1149425 None:intergenic 40.0%
TTTCAACTTCACGCATCACG+TGG + chr3_2:1145605-1145624 Msa0390350:CDS 45.0%
!!! CGATGCTTTATGGTTTTGGG+AGG + chr3_2:1146466-1146485 Msa0390350:intron 45.0%
! TTGTTGTTCCTAATGCTCCC+TGG + chr3_2:1146533-1146552 Msa0390350:intron 45.0%
!!! GGTTTTGAGAGCTTAGTCTC+TGG + chr3_2:1146684-1146703 Msa0390350:CDS 45.0%
TACAGGTCACCCTTTCTAGA+AGG + chr3_2:1146864-1146883 Msa0390350:intron 45.0%
! GTTCCATCGACCTTCTAGAA+AGG - chr3_2:1146877-1146896 None:intergenic 45.0%
AAGGTCGATGGAACTTTGAG+TGG + chr3_2:1146883-1146902 Msa0390350:CDS 45.0%
CGATGGAACTTTGAGTGGTT+TGG + chr3_2:1146888-1146907 Msa0390350:CDS 45.0%
!! AACTTTGAGTGGTTTGGTCC+CGG + chr3_2:1146894-1146913 Msa0390350:CDS 45.0%
CTCAACCAAGTTAACTGTGG+AGG + chr3_2:1147546-1147565 Msa0390350:CDS 45.0%
CAACCAAGTTAACTGTGGAG+GGG + chr3_2:1147548-1147567 Msa0390350:CDS 45.0%
ACTCTGTCTTCCAAGACTGT+TGG - chr3_2:1147619-1147638 None:intergenic 45.0%
AGTGCACCTTTAAGCTGATC+TGG - chr3_2:1147643-1147662 None:intergenic 45.0%
! GATCAGCTTAAAGGTGCACT+TGG + chr3_2:1147643-1147662 Msa0390350:CDS 45.0%
! AGAGCATCACGTAAAGGTAC+GGG - chr3_2:1147697-1147716 None:intergenic 45.0%
!! GAGAGCATCACGTAAAGGTA+CGG - chr3_2:1147698-1147717 None:intergenic 45.0%
CACCATGCGCTGCTAATATT+AGG + chr3_2:1147835-1147854 Msa0390350:intron 45.0%
! AAGTAACTTGTGGCTTAGCC+TGG + chr3_2:1148074-1148093 Msa0390350:intron 45.0%
AACGCATGTATGGTTGCAAC+TGG + chr3_2:1148509-1148528 Msa0390350:intron 45.0%
! GTTACACCTTTTGGTCATGC+TGG + chr3_2:1148608-1148627 Msa0390350:intron 45.0%
CATAACCCAGCATGACCAAA+AGG - chr3_2:1148617-1148636 None:intergenic 45.0%
CGTGACAGTGTAAGACTTTC+TGG - chr3_2:1148650-1148669 None:intergenic 45.0%
TCATCCAAACTGTGACAGTG+AGG - chr3_2:1148806-1148825 None:intergenic 45.0%
CTCGAGACCTATTAAACCCT+AGG - chr3_2:1148852-1148871 None:intergenic 45.0%
CTAGGGTTTAATAGGTCTCG+AGG + chr3_2:1148850-1148869 Msa0390350:intron 45.0%
AGGGTTTAATAGGTCTCGAG+GGG + chr3_2:1148852-1148871 Msa0390350:intron 45.0%
TTTAATAGGTCTCGAGGGGA+AGG + chr3_2:1148856-1148875 Msa0390350:intron 45.0%
!! AGCTGGATGAAAGTTCTAGG+TGG + chr3_2:1149003-1149022 Msa0390350:intron 45.0%
ATCTGGACTTGATTCTCCCA+GGG - chr3_2:1149344-1149363 None:intergenic 45.0%
AATCTGGACTTGATTCTCCC+AGG - chr3_2:1149345-1149364 None:intergenic 45.0%
! TGCACCTGCTGCTTATGCTA+AGG + chr3_2:1145672-1145691 Msa0390350:CDS 50.0%
! CACCCTTTCTAGAAGGTCGA+TGG + chr3_2:1146871-1146890 Msa0390350:CDS 50.0%
GGGGCCACTTAGAATGAAAG+AGG + chr3_2:1147567-1147586 Msa0390350:CDS 50.0%
GCCCTAATATTAGCAGCGCA+TGG - chr3_2:1147840-1147859 None:intergenic 50.0%
CTTGATTCTCCCAGGGATGA+CGG - chr3_2:1149337-1149356 None:intergenic 50.0%
GCGTGGTTGTTGCAGAGCTA+TGG + chr3_2:1145633-1145652 Msa0390350:CDS 55.0%
GCTGTTGTGTCCAGGTCTCT+TGG + chr3_2:1146490-1146509 Msa0390350:intron 55.0%
GTTGTGTCCAGGTCTCTTGG+TGG + chr3_2:1146493-1146512 Msa0390350:intron 55.0%
! TCCAGGTCTCTTGGTGGTTC+CGG + chr3_2:1146499-1146518 Msa0390350:intron 55.0%
!! TGGGAAGTCCAGGGAGCATT+AGG - chr3_2:1146544-1146563 None:intergenic 55.0%
AGCGGCTCAATCCAACACCT+CGG + chr3_2:1146760-1146779 Msa0390350:CDS 55.0%
ATCCTAGCCGCAAACAACCC+TGG - chr3_2:1146924-1146943 None:intergenic 55.0%
TGGCCCCTCCACAGTTAACT+TGG - chr3_2:1147554-1147573 None:intergenic 55.0%
! GCTTAAAGGTGCACTTGGGC+AGG + chr3_2:1147648-1147667 Msa0390350:CDS 55.0%
!! TCGGCGAGAGCATCACGTAA+AGG - chr3_2:1147703-1147722 None:intergenic 55.0%
TTACGTGATGCTCTCGCCGA+TGG + chr3_2:1147703-1147722 Msa0390350:CDS 55.0%
TACGTGATGCTCTCGCCGAT+GGG + chr3_2:1147704-1147723 Msa0390350:CDS 55.0%
TGGGAGGAGCTGTTGTGTCC+AGG + chr3_2:1146482-1146501 Msa0390350:intron 60.0%
ACCGGAACCACCAAGAGACC+TGG - chr3_2:1146503-1146522 None:intergenic 60.0%
TACGTTGTGGGCCGAGGTGT+TGG - chr3_2:1146774-1146793 None:intergenic 60.0%
GTCTCTTACGTTGTGGGCCG+AGG - chr3_2:1146780-1146799 None:intergenic 60.0%
GCAAACAACCCTGGAGAGCC+GGG - chr3_2:1146915-1146934 None:intergenic 60.0%
CGCAAACAACCCTGGAGAGC+CGG - chr3_2:1146916-1146935 None:intergenic 60.0%
CGGCTCTCCAGGGTTGTTTG+CGG + chr3_2:1146914-1146933 Msa0390350:CDS 60.0%
CTCCAGGGTTGTTTGCGGCT+AGG + chr3_2:1146919-1146938 Msa0390350:CDS 60.0%
GATGCATCGCCGTCATCCCT+GGG + chr3_2:1149325-1149344 Msa0390350:CDS 60.0%
CGCATCACGTGGCAGAAGCG+TGG + chr3_2:1145616-1145635 Msa0390350:CDS 65.0%
!! TGGTTTGGTCCCGGCTCTCC+AGG + chr3_2:1146903-1146922 Msa0390350:CDS 65.0%
! GGTTTGGTCCCGGCTCTCCA+GGG + chr3_2:1146904-1146923 Msa0390350:CDS 65.0%
CGATGCATCGCCGTCATCCC+TGG + chr3_2:1149324-1149343 Msa0390350:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 1145384 1149671 1145384 ID=Msa0390350;Name=Msa0390350
chr3_2 mRNA 1145384 1149671 1145384 ID=Msa0390350-mRNA-1;Parent=Msa0390350;Name=Msa0390350-mRNA-1;_AED=0.13;_eAED=0.13;_QI=103|1|1|1|0.85|0.75|8|296|295
chr3_2 exon 1145384 1145465 1145384 ID=Msa0390350-mRNA-1:exon:366;Parent=Msa0390350-mRNA-1
chr3_2 exon 1145496 1145735 1145496 ID=Msa0390350-mRNA-1:exon:367;Parent=Msa0390350-mRNA-1
chr3_2 exon 1146669 1146790 1146669 ID=Msa0390350-mRNA-1:exon:368;Parent=Msa0390350-mRNA-1
chr3_2 exon 1146869 1146952 1146869 ID=Msa0390350-mRNA-1:exon:369;Parent=Msa0390350-mRNA-1
chr3_2 exon 1147086 1147182 1147086 ID=Msa0390350-mRNA-1:exon:370;Parent=Msa0390350-mRNA-1
chr3_2 exon 1147526 1147742 1147526 ID=Msa0390350-mRNA-1:exon:371;Parent=Msa0390350-mRNA-1
chr3_2 exon 1148341 1148393 1148341 ID=Msa0390350-mRNA-1:exon:372;Parent=Msa0390350-mRNA-1
chr3_2 exon 1149280 1149671 1149280 ID=Msa0390350-mRNA-1:exon:373;Parent=Msa0390350-mRNA-1
chr3_2 five_prime_UTR 1145384 1145465 1145384 ID=Msa0390350-mRNA-1:five_prime_utr;Parent=Msa0390350-mRNA-1
chr3_2 five_prime_UTR 1145496 1145516 1145496 ID=Msa0390350-mRNA-1:five_prime_utr;Parent=Msa0390350-mRNA-1
chr3_2 CDS 1145517 1145735 1145517 ID=Msa0390350-mRNA-1:cds;Parent=Msa0390350-mRNA-1
chr3_2 CDS 1146669 1146790 1146669 ID=Msa0390350-mRNA-1:cds;Parent=Msa0390350-mRNA-1
chr3_2 CDS 1146869 1146952 1146869 ID=Msa0390350-mRNA-1:cds;Parent=Msa0390350-mRNA-1
chr3_2 CDS 1147086 1147182 1147086 ID=Msa0390350-mRNA-1:cds;Parent=Msa0390350-mRNA-1
chr3_2 CDS 1147526 1147742 1147526 ID=Msa0390350-mRNA-1:cds;Parent=Msa0390350-mRNA-1
chr3_2 CDS 1148341 1148393 1148341 ID=Msa0390350-mRNA-1:cds;Parent=Msa0390350-mRNA-1
chr3_2 CDS 1149280 1149375 1149280 ID=Msa0390350-mRNA-1:cds;Parent=Msa0390350-mRNA-1
chr3_2 three_prime_UTR 1149376 1149671 1149376 ID=Msa0390350-mRNA-1:three_prime_utr;Parent=Msa0390350-mRNA-1
Gene Sequence

>Msa0390350

ATGGCTGTTTCTGTTTCTATTTCTGCTTCTCATCCTTGTATTTCAACAATCACAAATTGTTCAATCCCTTCATCTTCTTCATGGAAAGTTTCAACTTCACGCATCACGTGGCAGAAGCGTGGTTGTTGCAGAGCTATGGTTCAAGTTCAAACTGGTGCACCTGCTGCTTATGCTAAGGAAATGGAACGCCTTTCTGCTAAAGAATCGCTTCTTCTTGCTTTTAAGGATGCAGGTGGTTTTGAGAGCTTAGTCTCTGGGAAGACAACTGAATATCAAAGAATTGATGTGAATGAAAGGATAACTGGTCTTGAGCGGCTCAATCCAACACCTCGGCCCACAACGTCACCCTTTCTAGAAGGTCGATGGAACTTTGAGTGGTTTGGTCCCGGCTCTCCAGGGTTGTTTGCGGCTAGGATGATATTTGAGAATTTTCCTTCAAGTTTAGCTAATTTGTCAAAAATGGATGTCTTTATCAAGGATGGAAATGCAAAGATTAGCGCAAACACATTATTTTTAAACTCGATAGAAAGCAGAATTATTCTCTCAACCAAGTTAACTGTGGAGGGGCCACTTAGAATGAAAGAGGAGTATGTGGAAGGGATTATTGTGTCACCAACAGTCTTGGAAGACAGAGTACCAGATCAGCTTAAAGGTGCACTTGGGCAGGCAGTTAATGTTTTACAACAGCTTCCCGTACCTTTACGTGATGCTCTCGCCGATGGGCTAAAAGTTCCACTAAGTGGAAGCTTTCAAAGACTCTTCATGATTTCTTATCTCGATGAGGAGATACTTATAATAAGGAACACAGCTGGGATACCAGAAGTTTTAACGAGACTCGATGCATCGCCGTCATCCCTGGGAGAATCAAGTCCAGATTATGAAAGCTAG

Protein sequence

>Msa0390350

MAVSVSISASHPCISTITNCSIPSSSSWKVSTSRITWQKRGCCRAMVQVQTGAPAAYAKEMERLSAKESLLLAFKDAGGFESLVSGKTTEYQRIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGPGSPGLFAARMIFENFPSSLANLSKMDVFIKDGNAKISANTLFLNSIESRIILSTKLTVEGPLRMKEEYVEGIIVSPTVLEDRVPDQLKGALGQAVNVLQQLPVPLRDALADGLKVPLSGSFQRLFMISYLDEEILIIRNTAGIPEVLTRLDASPSSLGESSPDYES*