AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0516480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516480 MtrunA17_Chr3g0127091 100.000 122 0 0 32 153 269 390 5.71e-82 246
Msa0516480 MtrunA17_Chr4g0068971 39.560 91 53 1 37 125 156 246 8.64e-15 69.3
Msa0516480 MtrunA17_Chr2g0293811 42.466 73 42 0 37 109 256 328 4.64e-14 68.2
Msa0516480 MtrunA17_Chr1g0194191 38.750 80 49 0 37 116 274 353 4.34e-12 62.4
Msa0516480 MtrunA17_Chr1g0171571 37.975 79 43 2 34 109 566 641 6.25e-12 62.4
Msa0516480 MtrunA17_Chr3g0136811 31.818 110 70 1 30 134 242 351 9.01e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516480 AT4G27800.1 73.554 121 32 0 32 152 268 388 4.88e-61 193
Msa0516480 AT4G27800.2 80.303 66 13 0 32 97 268 333 1.68e-30 112
Msa0516480 AT4G27800.3 75.862 58 14 0 32 89 268 325 1.28e-24 97.1
Msa0516480 AT1G48040.1 38.272 81 48 1 31 109 266 346 8.28e-13 65.1
Msa0516480 AT3G17250.1 36.986 73 46 0 37 109 318 390 2.76e-12 63.5
Msa0516480 AT3G62260.3 31.522 92 60 1 37 125 184 275 4.73e-12 62.4
Msa0516480 AT3G62260.1 31.522 92 60 1 37 125 273 364 6.34e-12 62.4
Msa0516480 AT3G62260.2 31.522 92 60 1 37 125 274 365 6.86e-12 62.4

Find 118 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAGAGGTGGAGTGTTTA+TGG 0.113064 3_4:-67984169 None:intergenic
AAGGAATGATTTAGAGATTA+AGG 0.193123 3_4:-67986960 None:intergenic
TCTGTTTGTGTTTATGTATT+TGG 0.232802 3_4:-67984189 None:intergenic
GAGAAACCTTGGAGACTATT+TGG 0.260980 3_4:-67984365 None:intergenic
CTTATTATTTCCTAGGAATA+TGG 0.264600 3_4:-67985253 None:intergenic
TGTTAGCATCCGATGGCTTA+TGG 0.271564 3_4:+67987326 Msa0516480:CDS
TGAGGACTAGTTAGCAATTC+TGG 0.276029 3_4:-67985804 None:intergenic
CTGACATGAGGTTGTTAAAA+TGG 0.280042 3_4:+67985070 Msa0516480:five_prime_UTR
GCTTCAAACTTGAAAGCTTT+AGG 0.297676 3_4:+67984097 Msa0516480:five_prime_UTR
TTGCTGTATCCCGTGCATTT+GGG 0.314251 3_4:+67986901 Msa0516480:five_prime_UTR
AAGCTGCTAATTTCACATAT+TGG 0.316833 3_4:+67985273 Msa0516480:five_prime_UTR
ATTGCTGTATCCCGTGCATT+TGG 0.322501 3_4:+67986900 Msa0516480:five_prime_UTR
ATAAATTCCTTTATACTAGA+AGG 0.328668 3_4:-67986979 None:intergenic
TGGAAGATGATATTATTCTT+AGG 0.339370 3_4:+67984342 Msa0516480:five_prime_UTR
AGAGTTACTTGATAAATATC+AGG 0.343230 3_4:-67987280 None:intergenic
TCTTTCGCGGCCGTGTTTGA+TGG 0.343544 3_4:+67984386 Msa0516480:five_prime_UTR
AACATTTAAAAGAAAATATC+AGG 0.346106 3_4:-67988336 None:intergenic
AATCATTCCTTCTAGTATAA+AGG 0.347628 3_4:+67986972 Msa0516480:five_prime_UTR
GAATTGTGTCTATTGGAATC+TGG 0.357830 3_4:+67988172 Msa0516480:CDS
ACCGTTGGAATTGTGTCTAT+TGG 0.358693 3_4:+67988165 Msa0516480:CDS
CAGACTCTCCTCCTATTAGA+TGG 0.360549 3_4:+67984285 Msa0516480:five_prime_UTR
AATCCGTTAAAATCAGTTAG+AGG 0.362802 3_4:+67983976 Msa0516480:five_prime_UTR
ATCCCTTGCACAAGTCGTTT+TGG 0.370646 3_4:+67987611 Msa0516480:CDS
AGCATTATAATTGCCGATCT+AGG 0.371221 3_4:+67987736 Msa0516480:CDS
GAGAGAGAGAGTTAGATAAC+AGG 0.372425 3_4:-67984009 None:intergenic
GATACTGATCCCCATCTAAT+AGG 0.373259 3_4:-67984296 None:intergenic
TTAGCAGCTTATTATTTCCT+AGG 0.379640 3_4:-67985260 None:intergenic
GTTTATGGAGCTTAGTTAAG+AGG 0.385365 3_4:-67984154 None:intergenic
ACTAGTCCTCACCGTCCATA+TGG 0.386128 3_4:+67985816 Msa0516480:five_prime_UTR
GTTAGCATCCGATGGCTTAT+GGG 0.389003 3_4:+67987327 Msa0516480:CDS
ATGGGGATCAGTATCTTTGC+AGG 0.390272 3_4:+67984304 Msa0516480:five_prime_UTR
TTGCTTCTGTCCAGTTCCTC+AGG 0.392143 3_4:+67984420 Msa0516480:five_prime_UTR
TTTAAAGGCTTGAAATGAAA+GGG 0.400684 3_4:+67985196 Msa0516480:five_prime_UTR
GTGAAAAGGATGCTACAAAA+AGG 0.413005 3_4:+67987070 Msa0516480:CDS
ATAGCTAAGACCTGAGGAAC+TGG 0.414366 3_4:-67984430 None:intergenic
GGGGAGGAGGAGGATGAATC+AGG 0.415467 3_4:+67985216 Msa0516480:five_prime_UTR
TGAAATGAAAGGGGAGGAGG+AGG 0.428058 3_4:+67985206 Msa0516480:five_prime_UTR
GATATTTATCAAGTAACTCT+TGG 0.438968 3_4:+67987283 Msa0516480:CDS
ATCAAAAGAATCAGAGAAGC+AGG 0.445855 3_4:+67985864 Msa0516480:five_prime_UTR
GGACAGAAAAGTTCATTTCC+CGG 0.447424 3_4:+67987110 Msa0516480:CDS
GCAGGGTCCACGTGAAGAAA+TGG 0.449478 3_4:+67984322 Msa0516480:five_prime_UTR
AAGAGGAATCTTTGTATATG+TGG 0.453079 3_4:-67984137 None:intergenic
GAGGCCTTGTTGCTCCCATA+TGG 0.455386 3_4:-67985831 None:intergenic
TTCCAACGGTGGCTAGGGCT+TGG 0.460560 3_4:-67988152 None:intergenic
TGTGTTTATGTATTTGGAAG+AGG 0.466639 3_4:-67984183 None:intergenic
CACAATTCCAACGGTGGCTA+GGG 0.467000 3_4:-67988157 None:intergenic
GCGGCCGTGTTTGATGGCCA+TGG 0.471142 3_4:+67984392 Msa0516480:five_prime_UTR
AAGTTTGAAGCTAAAGATGA+AGG 0.471540 3_4:-67984085 None:intergenic
GAAGTAAAGAAGTATGCATC+TGG 0.475549 3_4:-67988247 None:intergenic
GCTTGAAATGAAAGGGGAGG+AGG 0.477022 3_4:+67985203 Msa0516480:five_prime_UTR
ATTACCAACGGTAGGATTTG+CGG 0.480678 3_4:+67986873 Msa0516480:five_prime_UTR
CCGTGTTTGATGGCCATGGA+GGG 0.482647 3_4:+67984396 Msa0516480:five_prime_UTR
ACATCTTAGTAGAATCTACT+TGG 0.485502 3_4:+67988301 Msa0516480:three_prime_UTR
ACACAATTCCAACGGTGGCT+AGG 0.491960 3_4:-67988158 None:intergenic
TCTCCAAGGTTTCTCTTTCG+CGG 0.496528 3_4:+67984373 Msa0516480:five_prime_UTR
ACAGCAACTGCCATATTCCT+AGG 0.507970 3_4:+67985243 Msa0516480:five_prime_UTR
AACTTGAAAGCTTTAGGTGA+TGG 0.512962 3_4:+67984103 Msa0516480:five_prime_UTR
CTTAGGCCAAATAGTCTCCA+AGG 0.519183 3_4:+67984359 Msa0516480:five_prime_UTR
GCTTATGGGATTACATGAGC+AGG 0.519531 3_4:+67987341 Msa0516480:CDS
ATGTACACTAAATATTATAC+AGG 0.519730 3_4:-67988273 None:intergenic
CTAGTCCTCACCGTCCATAT+GGG 0.520919 3_4:+67985817 Msa0516480:five_prime_UTR
GAATCAGAGAAGCAGGTGGA+TGG 0.523820 3_4:+67985871 Msa0516480:five_prime_UTR
AAGGAGCTCAGGAAGGAAGA+TGG 0.526606 3_4:+67987089 Msa0516480:CDS
TGCTGTATCCCGTGCATTTG+GGG 0.527648 3_4:+67986902 Msa0516480:five_prime_UTR
GCATTATAATTGCCGATCTA+GGG 0.535217 3_4:+67987737 Msa0516480:CDS
AGTTTGAAGCTAAAGATGAA+GGG 0.543295 3_4:-67984084 None:intergenic
AGACTCTCCTCCTATTAGAT+GGG 0.543447 3_4:+67984286 Msa0516480:five_prime_UTR
TTTATAGTGTTAGCATCCGA+TGG 0.544491 3_4:+67987319 Msa0516480:CDS
AACGGATTGGATTCTCTCGG+TGG 0.545973 3_4:-67983961 None:intergenic
GTGCTTGCAGGAAGACAGAC+TGG 0.546345 3_4:+67988085 Msa0516480:intron
GGAGAGTCTGTCAATGATGA+AGG 0.549099 3_4:-67984272 None:intergenic
CGGCCGCGAAAGAGAAACCT+TGG 0.549935 3_4:-67984376 None:intergenic
CTCAGTTCAGATACTGAAGA+AGG 0.550057 3_4:-67984045 None:intergenic
GTCCAAGCCCTAGCCACCGT+TGG 0.555090 3_4:+67988150 Msa0516480:CDS
CAATGATGAAGGTGCATCAA+TGG 0.556018 3_4:-67984261 None:intergenic
ACAAAATACATACCCTAGAT+CGG 0.557827 3_4:-67987749 None:intergenic
ATCGCATGTCCCCAAATGCA+CGG 0.559501 3_4:-67986911 None:intergenic
TTTAACGGATTGGATTCTCT+CGG 0.562239 3_4:-67983964 None:intergenic
CCCTCCATGGCCATCAAACA+CGG 0.563996 3_4:-67984396 None:intergenic
TGTACAGTTCAAAGATGACT+TGG 0.565147 3_4:+67987246 Msa0516480:intron
AATCAGAGAAGCAGGTGGAT+GGG 0.572153 3_4:+67985872 Msa0516480:five_prime_UTR
GTTTATGTATTTGGAAGAGG+TGG 0.576117 3_4:-67984180 None:intergenic
TGTTGAAGAAGCATTAAAGC+AGG 0.576690 3_4:+67985035 Msa0516480:five_prime_UTR
TCGCATGTCCCCAAATGCAC+GGG 0.578399 3_4:-67986910 None:intergenic
TACCAAAACGACTTGTGCAA+GGG 0.580364 3_4:-67987613 None:intergenic
GAGTGTCTTGAAGCTCTACA+AGG 0.580723 3_4:+67984979 Msa0516480:five_prime_UTR
TTACCAAAACGACTTGTGCA+AGG 0.581838 3_4:-67987614 None:intergenic
TTAAAGGCTTGAAATGAAAG+GGG 0.583830 3_4:+67985197 Msa0516480:five_prime_UTR
ACACTAAATATTATACAGGC+AGG 0.583996 3_4:-67988269 None:intergenic
TCATCTTCCATTTCTTCACG+TGG 0.584276 3_4:-67984329 None:intergenic
CTACAGGGATGAGTTATACA+AGG 0.587623 3_4:+67984957 Msa0516480:intron
GGACAGAAGCAAACCCTCCA+TGG 0.588408 3_4:-67984409 None:intergenic
ATCTCCGCAAATCCTACCGT+TGG 0.588610 3_4:-67986877 None:intergenic
GAGTTACTTGATAAATATCA+GGG 0.596312 3_4:-67987279 None:intergenic
ACTGATCCCCATCTAATAGG+AGG 0.597752 3_4:-67984293 None:intergenic
GTCTTGAAGCTCTACAAGGT+GGG 0.604160 3_4:+67984983 Msa0516480:five_prime_UTR
GCAAAAGGTAGATAACACTT+AGG 0.605615 3_4:-67987045 None:intergenic
CATGTAATCCCATAAGCCAT+CGG 0.609703 3_4:-67987335 None:intergenic
GCCGTGTTTGATGGCCATGG+AGG 0.611537 3_4:+67984395 Msa0516480:five_prime_UTR
AAGGCTTGAAATGAAAGGGG+AGG 0.613590 3_4:+67985200 Msa0516480:five_prime_UTR
TGAAGGTGCATCAATGGCTA+TGG 0.614608 3_4:-67984255 None:intergenic
ACATATTGGTGACTCATCTG+TGG 0.614996 3_4:+67985287 Msa0516480:five_prime_UTR
TGGGGATCAGTATCTTTGCA+GGG 0.616882 3_4:+67984305 Msa0516480:five_prime_UTR
TTCTTTAGATTACCAACGGT+AGG 0.622788 3_4:+67986865 Msa0516480:intron
CCTTGTTGCTCCCATATGGA+CGG 0.623217 3_4:-67985827 None:intergenic
GACTCTCCTCCTATTAGATG+GGG 0.625445 3_4:+67984287 Msa0516480:five_prime_UTR
TGGCTATGGCAGAACAGCAA+CGG 0.629952 3_4:-67984241 None:intergenic
CCGTCCATATGGGAGCAACA+AGG 0.639612 3_4:+67985827 Msa0516480:five_prime_UTR
CATTTGTTAAAGCTGACATG+AGG 0.639772 3_4:+67985058 Msa0516480:five_prime_UTR
TCTGCAGGACCAACGTACAC+AGG 0.646615 3_4:+67987705 Msa0516480:intron
AGGGATCAACTACGAAAACA+TGG 0.647059 3_4:+67987475 Msa0516480:CDS
TCCAATAGACACAATTCCAA+CGG 0.647966 3_4:-67988166 None:intergenic
TTGCTCCCATATGGACGGTG+AGG 0.659175 3_4:-67985822 None:intergenic
AAAAGAATCAGAGAAGCAGG+TGG 0.661475 3_4:+67985867 Msa0516480:five_prime_UTR
TGTCTTGAAGCTCTACAAGG+TGG 0.664593 3_4:+67984982 Msa0516480:five_prime_UTR
ACGAAAACATGGAAACACAC+AGG 0.687122 3_4:+67987486 Msa0516480:CDS
AATAGACACAATTCCAACGG+TGG 0.712558 3_4:-67988163 None:intergenic
TGACATTATCCTGTGTACGT+TGG 0.736320 3_4:-67987714 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATGAAAATAAAATTC+TGG + chr3_4:67986099-67986118 Msa0516480:intron 10.0%
!! ATTAATTAATTATGTGTGTT+TGG + chr3_4:67984486-67984505 Msa0516480:intron 15.0%
!! TTAATTAATTATGTGTGTTT+GGG + chr3_4:67984487-67984506 Msa0516480:intron 15.0%
!! AAATTTACAAAATCAATACA+AGG - chr3_4:67984534-67984553 None:intergenic 15.0%
!!! TTAATCAATTTTATTCATGT+AGG + chr3_4:67985761-67985780 Msa0516480:intron 15.0%
!!! ATAATTAATCTGATGTTTTA+TGG + chr3_4:67986158-67986177 Msa0516480:intron 15.0%
!!! TAATTAATCTGATGTTTTAT+GGG + chr3_4:67986159-67986178 Msa0516480:intron 15.0%
!!! TCATTTTGAATAATTTGTTT+AGG + chr3_4:67986347-67986366 Msa0516480:intron 15.0%
!!! CTTTTTTAATAATATTGGAT+AGG - chr3_4:67986396-67986415 None:intergenic 15.0%
!!! CATCTCTTTTTTAATAATAT+TGG - chr3_4:67986401-67986420 None:intergenic 15.0%
!! TTTGAATTTCATTGATATTT+AGG + chr3_4:67986624-67986643 Msa0516480:intron 15.0%
!!! TTTTATTTAATTTACCTTGA+TGG + chr3_4:67986746-67986765 Msa0516480:intron 15.0%
!!! TTTTTTTTTTCTTTTCACAA+AGG - chr3_4:67987832-67987851 None:intergenic 15.0%
!! ATTTAATAAAACTCATATTC+TGG + chr3_4:67987864-67987883 Msa0516480:intron 15.0%
!! AACATTTAAAAGAAAATATC+AGG - chr3_4:67988339-67988358 None:intergenic 15.0%
!! TAATTAATTATGTGTGTTTG+GGG + chr3_4:67984488-67984507 Msa0516480:intron 20.0%
!! TAGTTAAAAGCTTATAACAT+AGG + chr3_4:67984651-67984670 Msa0516480:intron 20.0%
!!! ATAACAAATCTAGAATCATT+TGG - chr3_4:67985137-67985156 None:intergenic 20.0%
!!! ATTTGTTATGATTACATTGA+AGG + chr3_4:67985148-67985167 Msa0516480:intron 20.0%
!!! AGACAGTATTTTGTTTTTAA+AGG + chr3_4:67985181-67985200 Msa0516480:intron 20.0%
!!! AAAACCAATTTTGTATTCTT+AGG + chr3_4:67985402-67985421 Msa0516480:intron 20.0%
!!! TTCAAAAAATGGAAAAGTAT+CGG - chr3_4:67985620-67985639 None:intergenic 20.0%
!! ATAAATCATACATTTGACTA+GGG + chr3_4:67985653-67985672 Msa0516480:intron 20.0%
!! ATATAAAAAATGAAGGAACA+AGG - chr3_4:67985906-67985925 None:intergenic 20.0%
!!! AAAGAGCATATAAAAAATGA+AGG - chr3_4:67985913-67985932 None:intergenic 20.0%
!!! AATTAATCTGATGTTTTATG+GGG + chr3_4:67986160-67986179 Msa0516480:intron 20.0%
!! GAAATATATTGTTTCCAATA+AGG + chr3_4:67986245-67986264 Msa0516480:intron 20.0%
!! AAACACAATCCTAATAAAAT+AGG + chr3_4:67986526-67986545 Msa0516480:intron 20.0%
!!! TGATTTCATGATTTTGTTTT+GGG - chr3_4:67986571-67986590 None:intergenic 20.0%
!!! TTGATTTCATGATTTTGTTT+TGG - chr3_4:67986572-67986591 None:intergenic 20.0%
!! ATAAATTCCTTTATACTAGA+AGG - chr3_4:67986982-67987001 None:intergenic 20.0%
!! ATGTACACTAAATATTATAC+AGG - chr3_4:67988276-67988295 None:intergenic 20.0%
! TCTGTTTGTGTTTATGTATT+TGG - chr3_4:67984192-67984211 None:intergenic 25.0%
! TGGAAGATGATATTATTCTT+AGG + chr3_4:67984342-67984361 Msa0516480:five_prime_UTR 25.0%
! TGTTTCTTTATTATGAAAGC+CGG + chr3_4:67984604-67984623 Msa0516480:intron 25.0%
!! TTATTTTCATAAGTGGTACA+TGG - chr3_4:67984709-67984728 None:intergenic 25.0%
!!! TTTCAGCTTATTTTCATAAG+TGG - chr3_4:67984716-67984735 None:intergenic 25.0%
! TAGAGAATTTCAAATGTGTT+TGG - chr3_4:67984867-67984886 None:intergenic 25.0%
!!! TTTTAAAGGCTTGAAATGAA+AGG + chr3_4:67985195-67985214 Msa0516480:five_prime_UTR 25.0%
! TTTAAAGGCTTGAAATGAAA+GGG + chr3_4:67985196-67985215 Msa0516480:five_prime_UTR 25.0%
! CTTATTATTTCCTAGGAATA+TGG - chr3_4:67985256-67985275 None:intergenic 25.0%
! ACTACCTAAGAATACAAAAT+TGG - chr3_4:67985409-67985428 None:intergenic 25.0%
! CTACTTACTTAGTTACATAT+CGG + chr3_4:67985554-67985573 Msa0516480:intron 25.0%
! TACTTACTTAGTTACATATC+GGG + chr3_4:67985555-67985574 Msa0516480:intron 25.0%
!!! TCAAAAAATGGAAAAGTATC+GGG - chr3_4:67985619-67985638 None:intergenic 25.0%
! GTTGTAGATACTTCAAAAAA+TGG - chr3_4:67985631-67985650 None:intergenic 25.0%
! CATAAATCATACATTTGACT+AGG + chr3_4:67985652-67985671 Msa0516480:intron 25.0%
! ATCATTCAACTAGAATATCT+AGG + chr3_4:67985711-67985730 Msa0516480:intron 25.0%
! TCATTCAACTAGAATATCTA+GGG + chr3_4:67985712-67985731 Msa0516480:intron 25.0%
!!! TTTTATATGCTCTTTGAGTT+TGG + chr3_4:67985918-67985937 Msa0516480:intron 25.0%
!!! TTGAGTTTGGTCAATTTTTT+TGG + chr3_4:67985931-67985950 Msa0516480:intron 25.0%
!!! TTTTTGGTTTTAAAGAGTCT+AGG + chr3_4:67985947-67985966 Msa0516480:intron 25.0%
! GTCAAAAAGACATCAATTTA+TGG + chr3_4:67986286-67986305 Msa0516480:intron 25.0%
! AGAAATAACAAAAACAGTTG+AGG + chr3_4:67986424-67986443 Msa0516480:intron 25.0%
! GAAATAACAAAAACAGTTGA+GGG + chr3_4:67986425-67986444 Msa0516480:intron 25.0%
! AAATAACAAAAACAGTTGAG+GGG + chr3_4:67986426-67986445 Msa0516480:intron 25.0%
!!! TTTTTGCTTTTGTTTGAGTT+TGG - chr3_4:67986458-67986477 None:intergenic 25.0%
! CTAATATCCAACTACAAATT+AGG + chr3_4:67986594-67986613 Msa0516480:intron 25.0%
! TTCAAACTACACTTTATTGA+AGG + chr3_4:67986680-67986699 Msa0516480:intron 25.0%
!! TTGAAGGTCATTCTTTTAAT+TGG + chr3_4:67986696-67986715 Msa0516480:intron 25.0%
!!! TGAAGGTCATTCTTTTAATT+GGG + chr3_4:67986697-67986716 Msa0516480:intron 25.0%
! AAGGAATGATTTAGAGATTA+AGG - chr3_4:67986963-67986982 None:intergenic 25.0%
! AATCATTCCTTCTAGTATAA+AGG + chr3_4:67986972-67986991 Msa0516480:five_prime_UTR 25.0%
! GAGTTACTTGATAAATATCA+GGG - chr3_4:67987282-67987301 None:intergenic 25.0%
! AGAGTTACTTGATAAATATC+AGG - chr3_4:67987283-67987302 None:intergenic 25.0%
! GATATTTATCAAGTAACTCT+TGG + chr3_4:67987283-67987302 Msa0516480:CDS 25.0%
! TGCCAAAAACTTTATATTTG+AGG + chr3_4:67987511-67987530 Msa0516480:intron 25.0%
!! TGCCTCAAATATAAAGTTTT+TGG - chr3_4:67987516-67987535 None:intergenic 25.0%
! TTGTCATGTATATATGACTT+TGG + chr3_4:67987768-67987787 Msa0516480:intron 25.0%
! TTGTTTAAATCCTAAACCTT+TGG - chr3_4:67987941-67987960 None:intergenic 25.0%
!! TCTAACTGATTTTAACGGAT+TGG - chr3_4:67983977-67983996 None:intergenic 30.0%
AATCCGTTAAAATCAGTTAG+AGG + chr3_4:67983976-67983995 Msa0516480:five_prime_UTR 30.0%
!! AAGCCTCTAACTGATTTTAA+CGG - chr3_4:67983982-67984001 None:intergenic 30.0%
! AGTTTGAAGCTAAAGATGAA+GGG - chr3_4:67984087-67984106 None:intergenic 30.0%
! AAGTTTGAAGCTAAAGATGA+AGG - chr3_4:67984088-67984107 None:intergenic 30.0%
AAGAGGAATCTTTGTATATG+TGG - chr3_4:67984140-67984159 None:intergenic 30.0%
TGTGTTTATGTATTTGGAAG+AGG - chr3_4:67984186-67984205 None:intergenic 30.0%
TAAGCTAACAAACATGAGAA+AGG - chr3_4:67984466-67984485 None:intergenic 30.0%
CTTATCCAAACAAATTACAC+CGG - chr3_4:67984626-67984645 None:intergenic 30.0%
!! ACTAAGCTTTAGAACATGTT+TGG - chr3_4:67984832-67984851 None:intergenic 30.0%
! GACACGTTTTATGTATTAAC+TGG - chr3_4:67985100-67985119 None:intergenic 30.0%
TTAAAGGCTTGAAATGAAAG+GGG + chr3_4:67985197-67985216 Msa0516480:five_prime_UTR 30.0%
TTAGCAGCTTATTATTTCCT+AGG - chr3_4:67985263-67985282 None:intergenic 30.0%
AAGCTGCTAATTTCACATAT+TGG + chr3_4:67985273-67985292 Msa0516480:five_prime_UTR 30.0%
CTAAAGACACAAATGTCATT+TGG - chr3_4:67985455-67985474 None:intergenic 30.0%
ATGACATTTGTGTCTTTAGT+TGG + chr3_4:67985456-67985475 Msa0516480:intron 30.0%
! TATCAGACATGTATCGATAT+TGG + chr3_4:67985581-67985600 Msa0516480:intron 30.0%
!! CAAAAAATGGAAAAGTATCG+GGG - chr3_4:67985618-67985637 None:intergenic 30.0%
CATTCAACTAGAATATCTAG+GGG + chr3_4:67985713-67985732 Msa0516480:intron 30.0%
!!! TCTTTTGATTTCTTGAAGAG+AGG - chr3_4:67985853-67985872 None:intergenic 30.0%
AAAATCACACTTACAAAGTG+TGG + chr3_4:67985974-67985993 Msa0516480:intron 30.0%
ATTATGAGTTGTGACAACTT+AGG + chr3_4:67986129-67986148 Msa0516480:intron 30.0%
! AATTGATGTCTTTTTGACAG+TGG - chr3_4:67986284-67986303 None:intergenic 30.0%
TCAGGTGATAGGAAATTAAT+TGG + chr3_4:67986324-67986343 Msa0516480:intron 30.0%
!!! AGGATTGTGTTTTTAGAGAT+AGG - chr3_4:67986518-67986537 None:intergenic 30.0%
CCTAATAAAATAGGACAGTT+CGG + chr3_4:67986535-67986554 Msa0516480:intron 30.0%
GACAACGTTCATTTCAAAAA+TGG - chr3_4:67986784-67986803 None:intergenic 30.0%
CGTGCTTTCATTATATAGAA+CGG - chr3_4:67986808-67986827 None:intergenic 30.0%
CGTTCTATATAATGAAAGCA+CGG + chr3_4:67986806-67986825 Msa0516480:intron 30.0%
! CCTTTTCTTTAGATTACCAA+CGG + chr3_4:67986861-67986880 Msa0516480:intron 30.0%
ACATACATAAGATTACCTAC+CGG - chr3_4:67987132-67987151 None:intergenic 30.0%
GAACAAGCAGAATATTATTG+CGG - chr3_4:67987571-67987590 None:intergenic 30.0%
ACAAAATACATACCCTAGAT+CGG - chr3_4:67987752-67987771 None:intergenic 30.0%
CAGCAATTACGTTCTATAAT+TGG + chr3_4:67987795-67987814 Msa0516480:intron 30.0%
TAAAACTCATATTCTGGTCA+TGG + chr3_4:67987870-67987889 Msa0516480:intron 30.0%
! ATATCACTAGAGCATTAATG+TGG + chr3_4:67987914-67987933 Msa0516480:intron 30.0%
ACACTAAATATTATACAGGC+AGG - chr3_4:67988272-67988291 None:intergenic 30.0%
ACATCTTAGTAGAATCTACT+TGG + chr3_4:67988301-67988320 Msa0516480:three_prime_UTR 30.0%
!! TTTAACGGATTGGATTCTCT+CGG - chr3_4:67983967-67983986 None:intergenic 35.0%
GCTTCAAACTTGAAAGCTTT+AGG + chr3_4:67984097-67984116 Msa0516480:five_prime_UTR 35.0%
!! AACTTGAAAGCTTTAGGTGA+TGG + chr3_4:67984103-67984122 Msa0516480:five_prime_UTR 35.0%
GTTTATGGAGCTTAGTTAAG+AGG - chr3_4:67984157-67984176 None:intergenic 35.0%
GTTTATGTATTTGGAAGAGG+TGG - chr3_4:67984183-67984202 None:intergenic 35.0%
TTGAATATAGCTAAGACCTG+AGG - chr3_4:67984439-67984458 None:intergenic 35.0%
TTTCATAAGTGGTACATGGT+AGG - chr3_4:67984705-67984724 None:intergenic 35.0%
AATAAGCTGAAAACAGCTCA+TGG + chr3_4:67984724-67984743 Msa0516480:intron 35.0%
AGATTGTTTGGGAAAGCTTA+TGG - chr3_4:67984768-67984787 None:intergenic 35.0%
GAACACTAGTGAGATTGTTT+GGG - chr3_4:67984779-67984798 None:intergenic 35.0%
TGAACACTAGTGAGATTGTT+TGG - chr3_4:67984780-67984799 None:intergenic 35.0%
!! GCTTTAGAACATGTTTGGAT+TGG - chr3_4:67984827-67984846 None:intergenic 35.0%
ATAGTGTGCATTTGCTCTTA+TGG - chr3_4:67984890-67984909 None:intergenic 35.0%
!! TGTTGAAGAAGCATTAAAGC+AGG + chr3_4:67985035-67985054 Msa0516480:five_prime_UTR 35.0%
! CATTTGTTAAAGCTGACATG+AGG + chr3_4:67985058-67985077 Msa0516480:five_prime_UTR 35.0%
CTGACATGAGGTTGTTAAAA+TGG + chr3_4:67985070-67985089 Msa0516480:five_prime_UTR 35.0%
!! GTTTTATGAGAGGCACAATA+AGG - chr3_4:67985330-67985349 None:intergenic 35.0%
! CATTGTGCATGTTTTATGAG+AGG - chr3_4:67985340-67985359 None:intergenic 35.0%
!!! TTGGTTTTGTGACACATTCA+TGG - chr3_4:67985390-67985409 None:intergenic 35.0%
CTTAGGTAGTAATGTATCGA+AGG + chr3_4:67985419-67985438 Msa0516480:intron 35.0%
!! ATGTAGGTTTTATGCAGATC+TGG + chr3_4:67985777-67985796 Msa0516480:intron 35.0%
ATCAAAAGAATCAGAGAAGC+AGG + chr3_4:67985864-67985883 Msa0516480:five_prime_UTR 35.0%
CACTTGGTAAAACTAGGAAA+TGG - chr3_4:67986200-67986219 None:intergenic 35.0%
AACAATCAAACCACAACACT+TGG - chr3_4:67986216-67986235 None:intergenic 35.0%
GTAACTGATTGGAACCTTAT+TGG - chr3_4:67986262-67986281 None:intergenic 35.0%
! TTTTGACAGTGGTAACTGAT+TGG - chr3_4:67986273-67986292 None:intergenic 35.0%
TTAATTTCCTATCACCTGAC+AGG - chr3_4:67986323-67986342 None:intergenic 35.0%
! CCGAACTGTCCTATTTTATT+AGG - chr3_4:67986538-67986557 None:intergenic 35.0%
! ATGAGCACCTAATTTGTAGT+TGG - chr3_4:67986604-67986623 None:intergenic 35.0%
!! GGTCATTCTTTTAATTGGGT+TGG + chr3_4:67986701-67986720 Msa0516480:intron 35.0%
!!! TTACCTTGATGGTGCAATTT+TGG + chr3_4:67986757-67986776 Msa0516480:intron 35.0%
!! CCGTTGGTAATCTAAAGAAA+AGG - chr3_4:67986864-67986883 None:intergenic 35.0%
TTCTTTAGATTACCAACGGT+AGG + chr3_4:67986865-67986884 Msa0516480:intron 35.0%
!!! CACTTAGGAAGCATTTTAAC+AGG - chr3_4:67987033-67987052 None:intergenic 35.0%
GCAAAAGGTAGATAACACTT+AGG - chr3_4:67987048-67987067 None:intergenic 35.0%
GTGAAAAGGATGCTACAAAA+AGG + chr3_4:67987070-67987089 Msa0516480:CDS 35.0%
CATACATAAGATTACCTACC+GGG - chr3_4:67987131-67987150 None:intergenic 35.0%
TGTACAGTTCAAAGATGACT+TGG + chr3_4:67987246-67987265 Msa0516480:intron 35.0%
TTTATAGTGTTAGCATCCGA+TGG + chr3_4:67987319-67987338 Msa0516480:CDS 35.0%
! AGGGTAGCAGAAATGATTTT+GGG - chr3_4:67987381-67987400 None:intergenic 35.0%
! AAGGGTAGCAGAAATGATTT+TGG - chr3_4:67987382-67987401 None:intergenic 35.0%
!!! TTCTGCTACCCTTCTTTTTT+TGG + chr3_4:67987389-67987408 Msa0516480:intron 35.0%
ATTGTGAAGGTAATTCTCTG+CGG - chr3_4:67987417-67987436 None:intergenic 35.0%
AGCATTATAATTGCCGATCT+AGG + chr3_4:67987736-67987755 Msa0516480:CDS 35.0%
GCATTATAATTGCCGATCTA+GGG + chr3_4:67987737-67987756 Msa0516480:CDS 35.0%
!! TTCTTTTCACAAAGGCATAG+CGG - chr3_4:67987824-67987843 None:intergenic 35.0%
TTAATGTGGTCCAAAGGTTT+AGG + chr3_4:67987928-67987947 Msa0516480:intron 35.0%
AGCACTCAATATAAAACGCA+TGG - chr3_4:67988070-67988089 None:intergenic 35.0%
! GTTTTATATTGAGTGCTTGC+AGG + chr3_4:67988073-67988092 Msa0516480:intron 35.0%
TCCAATAGACACAATTCCAA+CGG - chr3_4:67988169-67988188 None:intergenic 35.0%
GAATTGTGTCTATTGGAATC+TGG + chr3_4:67988172-67988191 Msa0516480:CDS 35.0%
! GAAGTAAAGAAGTATGCATC+TGG - chr3_4:67988250-67988269 None:intergenic 35.0%
GAGAGAGAGAGTTAGATAAC+AGG - chr3_4:67984012-67984031 None:intergenic 40.0%
CTCAGTTCAGATACTGAAGA+AGG - chr3_4:67984048-67984067 None:intergenic 40.0%
! CAATGATGAAGGTGCATCAA+TGG - chr3_4:67984264-67984283 None:intergenic 40.0%
AGACTCTCCTCCTATTAGAT+GGG + chr3_4:67984286-67984305 Msa0516480:five_prime_UTR 40.0%
GATACTGATCCCCATCTAAT+AGG - chr3_4:67984299-67984318 None:intergenic 40.0%
TCATCTTCCATTTCTTCACG+TGG - chr3_4:67984332-67984351 None:intergenic 40.0%
GAGAAACCTTGGAGACTATT+TGG - chr3_4:67984368-67984387 None:intergenic 40.0%
!! GAAAGCCGGTGTAATTTGTT+TGG + chr3_4:67984618-67984637 Msa0516480:intron 40.0%
GTATAACTCATCCCTGTAGT+TGG - chr3_4:67984956-67984975 None:intergenic 40.0%
CTACAGGGATGAGTTATACA+AGG + chr3_4:67984957-67984976 Msa0516480:intron 40.0%
! ACATATTGGTGACTCATCTG+TGG + chr3_4:67985287-67985306 Msa0516480:five_prime_UTR 40.0%
! TATGAGAGGCACAATAAGGA+TGG - chr3_4:67985326-67985345 None:intergenic 40.0%
! GTATCGATATTGGATAGCGT+CGG + chr3_4:67985591-67985610 Msa0516480:intron 40.0%
!! TGAGGACTAGTTAGCAATTC+TGG - chr3_4:67985807-67985826 None:intergenic 40.0%
AAAAGAATCAGAGAAGCAGG+TGG + chr3_4:67985867-67985886 Msa0516480:five_prime_UTR 40.0%
ACTTACAAAGTGTGGAGAAG+AGG + chr3_4:67985982-67986001 Msa0516480:intron 40.0%
CTTACAAAGTGTGGAGAAGA+GGG + chr3_4:67985983-67986002 Msa0516480:intron 40.0%
AAGTCAGCTTAGACGGTAAA+AGG - chr3_4:67986057-67986076 None:intergenic 40.0%
! TTACCGTCTAAGCTGACTTT+CGG + chr3_4:67986058-67986077 Msa0516480:intron 40.0%
AGTTGTGACAACTTAGGATG+TGG + chr3_4:67986135-67986154 Msa0516480:intron 40.0%
CCACAACACTTGGTAAAACT+AGG - chr3_4:67986206-67986225 None:intergenic 40.0%
!!! CCTAGTTTTACCAAGTGTTG+TGG + chr3_4:67986203-67986222 Msa0516480:intron 40.0%
! TATAATGAAAGCACGGTGCA+TGG + chr3_4:67986813-67986832 Msa0516480:intron 40.0%
ATTACCAACGGTAGGATTTG+CGG + chr3_4:67986873-67986892 Msa0516480:five_prime_UTR 40.0%
! TCTACCTTTTGCGTGTGAAA+AGG + chr3_4:67987056-67987075 Msa0516480:CDS 40.0%
GGACAGAAAAGTTCATTTCC+CGG + chr3_4:67987110-67987129 Msa0516480:CDS 40.0%
AGAAAAGTTCATTTCCCGGT+AGG + chr3_4:67987114-67987133 Msa0516480:intron 40.0%
GTCATCTTTGAACTGTACAC+TGG - chr3_4:67987245-67987264 None:intergenic 40.0%
CATGTAATCCCATAAGCCAT+CGG - chr3_4:67987338-67987357 None:intergenic 40.0%
! GGGTAGCAGAAATGATTTTG+GGG - chr3_4:67987380-67987399 None:intergenic 40.0%
CTGCGGAACCAAAAAAAGAA+GGG - chr3_4:67987400-67987419 None:intergenic 40.0%
TCTGCGGAACCAAAAAAAGA+AGG - chr3_4:67987401-67987420 None:intergenic 40.0%
CAAGGATAGCAAGATTGTGA+AGG - chr3_4:67987430-67987449 None:intergenic 40.0%
! AGACGCAGTTTCTTTTGTGA+GGG + chr3_4:67987456-67987475 Msa0516480:CDS 40.0%
AGGGATCAACTACGAAAACA+TGG + chr3_4:67987475-67987494 Msa0516480:CDS 40.0%
ACGAAAACATGGAAACACAC+AGG + chr3_4:67987486-67987505 Msa0516480:CDS 40.0%
TACCAAAACGACTTGTGCAA+GGG - chr3_4:67987616-67987635 None:intergenic 40.0%
TTACCAAAACGACTTGTGCA+AGG - chr3_4:67987617-67987636 None:intergenic 40.0%
TCCATTATGATACACTCTGC+AGG + chr3_4:67987690-67987709 Msa0516480:intron 40.0%
TCCTGCAGAGTGTATCATAA+TGG - chr3_4:67987694-67987713 None:intergenic 40.0%
TGACATTATCCTGTGTACGT+TGG - chr3_4:67987717-67987736 None:intergenic 40.0%
! AGAGCATTAATGTGGTCCAA+AGG + chr3_4:67987922-67987941 Msa0516480:intron 40.0%
AATAGACACAATTCCAACGG+TGG - chr3_4:67988166-67988185 None:intergenic 40.0%
ACCGTTGGAATTGTGTCTAT+TGG + chr3_4:67988165-67988184 Msa0516480:CDS 40.0%
! TGGAAGAGGTGGAGTGTTTA+TGG - chr3_4:67984172-67984191 None:intergenic 45.0%
! TGAAGGTGCATCAATGGCTA+TGG - chr3_4:67984258-67984277 None:intergenic 45.0%
GGAGAGTCTGTCAATGATGA+AGG - chr3_4:67984275-67984294 None:intergenic 45.0%
CAGACTCTCCTCCTATTAGA+TGG + chr3_4:67984285-67984304 Msa0516480:five_prime_UTR 45.0%
GACTCTCCTCCTATTAGATG+GGG + chr3_4:67984287-67984306 Msa0516480:five_prime_UTR 45.0%
ACTGATCCCCATCTAATAGG+AGG - chr3_4:67984296-67984315 None:intergenic 45.0%
ATGGGGATCAGTATCTTTGC+AGG + chr3_4:67984304-67984323 Msa0516480:five_prime_UTR 45.0%
TGGGGATCAGTATCTTTGCA+GGG + chr3_4:67984305-67984324 Msa0516480:five_prime_UTR 45.0%
CTTAGGCCAAATAGTCTCCA+AGG + chr3_4:67984359-67984378 Msa0516480:five_prime_UTR 45.0%
TCTCCAAGGTTTCTCTTTCG+CGG + chr3_4:67984373-67984392 Msa0516480:five_prime_UTR 45.0%
ATAGCTAAGACCTGAGGAAC+TGG - chr3_4:67984433-67984452 None:intergenic 45.0%
TGTGCCAAATGCCAACTACA+GGG + chr3_4:67984942-67984961 Msa0516480:intron 45.0%
TCATCCCTGTAGTTGGCATT+TGG - chr3_4:67984949-67984968 None:intergenic 45.0%
GAGTGTCTTGAAGCTCTACA+AGG + chr3_4:67984979-67984998 Msa0516480:five_prime_UTR 45.0%
TGTCTTGAAGCTCTACAAGG+TGG + chr3_4:67984982-67985001 Msa0516480:five_prime_UTR 45.0%
GTCTTGAAGCTCTACAAGGT+GGG + chr3_4:67984983-67985002 Msa0516480:five_prime_UTR 45.0%
AAGGCTTGAAATGAAAGGGG+AGG + chr3_4:67985200-67985219 Msa0516480:five_prime_UTR 45.0%
ACAGCAACTGCCATATTCCT+AGG + chr3_4:67985243-67985262 Msa0516480:five_prime_UTR 45.0%
AATCAGAGAAGCAGGTGGAT+GGG + chr3_4:67985872-67985891 Msa0516480:five_prime_UTR 45.0%
AGTGTGGAGAAGAGGGTTAT+TGG + chr3_4:67985990-67986009 Msa0516480:intron 45.0%
CGGAGACATTTGATGTGTTG+GGG - chr3_4:67986031-67986050 None:intergenic 45.0%
GCGGAGACATTTGATGTGTT+GGG - chr3_4:67986032-67986051 None:intergenic 45.0%
TGCGGAGACATTTGATGTGT+TGG - chr3_4:67986033-67986052 None:intergenic 45.0%
GCTTAGACGGTAAAAGGTTG+CGG - chr3_4:67986051-67986070 None:intergenic 45.0%
! TACCGTCTAAGCTGACTTTC+GGG + chr3_4:67986059-67986078 Msa0516480:intron 45.0%
CTATCACCTGACAGGCTAAA+GGG - chr3_4:67986315-67986334 None:intergenic 45.0%
GGTCCAAAATTGCACCATCA+AGG - chr3_4:67986763-67986782 None:intergenic 45.0%
ATTGCTGTATCCCGTGCATT+TGG + chr3_4:67986900-67986919 Msa0516480:five_prime_UTR 45.0%
TTGCTGTATCCCGTGCATTT+GGG + chr3_4:67986901-67986920 Msa0516480:five_prime_UTR 45.0%
! GCATCCTTTTCACACGCAAA+AGG - chr3_4:67987063-67987082 None:intergenic 45.0%
GATGCTACAAAAAGGAGCTC+AGG + chr3_4:67987078-67987097 Msa0516480:CDS 45.0%
CTACAAAAAGGAGCTCAGGA+AGG + chr3_4:67987082-67987101 Msa0516480:CDS 45.0%
TGTTAGCATCCGATGGCTTA+TGG + chr3_4:67987326-67987345 Msa0516480:CDS 45.0%
GTTAGCATCCGATGGCTTAT+GGG + chr3_4:67987327-67987346 Msa0516480:CDS 45.0%
GCTTATGGGATTACATGAGC+AGG + chr3_4:67987341-67987360 Msa0516480:CDS 45.0%
! CAGACGCAGTTTCTTTTGTG+AGG + chr3_4:67987455-67987474 Msa0516480:CDS 45.0%
TATTATTGCGGCTGCTTCGA+TGG - chr3_4:67987559-67987578 None:intergenic 45.0%
! ATCCCTTGCACAAGTCGTTT+TGG + chr3_4:67987611-67987630 Msa0516480:CDS 45.0%
! GTGACATTTTGTTGCTGCAG+TGG - chr3_4:67988120-67988139 None:intergenic 45.0%
TGGCTATGGCAGAACAGCAA+CGG - chr3_4:67984244-67984263 None:intergenic 50.0%
TTGCTTCTGTCCAGTTCCTC+AGG + chr3_4:67984420-67984439 Msa0516480:five_prime_UTR 50.0%
CTGTGCCAAATGCCAACTAC+AGG + chr3_4:67984941-67984960 Msa0516480:intron 50.0%
GCTTGAAATGAAAGGGGAGG+AGG + chr3_4:67985203-67985222 Msa0516480:five_prime_UTR 50.0%
TGAAATGAAAGGGGAGGAGG+AGG + chr3_4:67985206-67985225 Msa0516480:five_prime_UTR 50.0%
ACTAGTCCTCACCGTCCATA+TGG + chr3_4:67985816-67985835 Msa0516480:five_prime_UTR 50.0%
CTAGTCCTCACCGTCCATAT+GGG + chr3_4:67985817-67985836 Msa0516480:five_prime_UTR 50.0%
CCTTGTTGCTCCCATATGGA+CGG - chr3_4:67985830-67985849 None:intergenic 50.0%
GAATCAGAGAAGCAGGTGGA+TGG + chr3_4:67985871-67985890 Msa0516480:five_prime_UTR 50.0%
ACATTTGATGTGTTGGGGCG+TGG - chr3_4:67986026-67986045 None:intergenic 50.0%
GTCCCGAAAGTCAGCTTAGA+CGG - chr3_4:67986064-67986083 None:intergenic 50.0%
! TAAGCTGACTTTCGGGACTC+TGG + chr3_4:67986066-67986085 Msa0516480:intron 50.0%
CCTATCACCTGACAGGCTAA+AGG - chr3_4:67986316-67986335 None:intergenic 50.0%
CCTTTAGCCTGTCAGGTGAT+AGG + chr3_4:67986313-67986332 Msa0516480:intron 50.0%
ATCTCCGCAAATCCTACCGT+TGG - chr3_4:67986880-67986899 None:intergenic 50.0%
TGCTGTATCCCGTGCATTTG+GGG + chr3_4:67986902-67986921 Msa0516480:five_prime_UTR 50.0%
ATCGCATGTCCCCAAATGCA+CGG - chr3_4:67986914-67986933 None:intergenic 50.0%
AAGGAGCTCAGGAAGGAAGA+TGG + chr3_4:67987089-67987108 Msa0516480:CDS 50.0%
!! CATGTTGCACAGAAGTGCTC+TGG + chr3_4:67987977-67987996 Msa0516480:intron 50.0%
CACAATTCCAACGGTGGCTA+GGG - chr3_4:67988160-67988179 None:intergenic 50.0%
ACACAATTCCAACGGTGGCT+AGG - chr3_4:67988161-67988180 None:intergenic 50.0%
GCAGGGTCCACGTGAAGAAA+TGG + chr3_4:67984322-67984341 Msa0516480:five_prime_UTR 55.0%
TCTTTCGCGGCCGTGTTTGA+TGG + chr3_4:67984386-67984405 Msa0516480:five_prime_UTR 55.0%
CCCTCCATGGCCATCAAACA+CGG - chr3_4:67984399-67984418 None:intergenic 55.0%
! CCGTGTTTGATGGCCATGGA+GGG + chr3_4:67984396-67984415 Msa0516480:five_prime_UTR 55.0%
GGACAGAAGCAAACCCTCCA+TGG - chr3_4:67984412-67984431 None:intergenic 55.0%
TTGCTCCCATATGGACGGTG+AGG - chr3_4:67985825-67985844 None:intergenic 55.0%
CCGTCCATATGGGAGCAACA+AGG + chr3_4:67985827-67985846 Msa0516480:five_prime_UTR 55.0%
!! GAGGCCTTGTTGCTCCCATA+TGG - chr3_4:67985834-67985853 None:intergenic 55.0%
TGGTCTCCCTTTAGCCTGTC+AGG + chr3_4:67986306-67986325 Msa0516480:intron 55.0%
TCGCATGTCCCCAAATGCAC+GGG - chr3_4:67986913-67986932 None:intergenic 55.0%
GAAACTGCGTCTGAGCTGCA+AGG - chr3_4:67987448-67987467 None:intergenic 55.0%
TCTGCAGGACCAACGTACAC+AGG + chr3_4:67987705-67987724 Msa0516480:intron 55.0%
GTGCTTGCAGGAAGACAGAC+TGG + chr3_4:67988085-67988104 Msa0516480:intron 55.0%
CGGCCGCGAAAGAGAAACCT+TGG - chr3_4:67984379-67984398 None:intergenic 60.0%
! GCCGTGTTTGATGGCCATGG+AGG + chr3_4:67984395-67984414 Msa0516480:five_prime_UTR 60.0%
GGGGAGGAGGAGGATGAATC+AGG + chr3_4:67985216-67985235 Msa0516480:five_prime_UTR 60.0%
TTCCAACGGTGGCTAGGGCT+TGG - chr3_4:67988155-67988174 None:intergenic 60.0%
! GCGGCCGTGTTTGATGGCCA+TGG + chr3_4:67984392-67984411 Msa0516480:five_prime_UTR 65.0%
GTCCAAGCCCTAGCCACCGT+TGG + chr3_4:67988150-67988169 Msa0516480:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 67983964 67988417 67983964 ID=Msa0516480;Name=Msa0516480
chr3_4 mRNA 67983964 67988417 67983964 ID=Msa0516480-mRNA-1;Parent=Msa0516480;Name=Msa0516480-mRNA-1;_AED=0.09;_eAED=0.09;_QI=1006|0.88|0.9|1|0.77|0.7|10|199|153
chr3_4 exon 67983964 67984441 67983964 ID=Msa0516480-mRNA-1:exon:17795;Parent=Msa0516480-mRNA-1
chr3_4 exon 67984963 67985091 67984963 ID=Msa0516480-mRNA-1:exon:17796;Parent=Msa0516480-mRNA-1
chr3_4 exon 67985187 67985308 67985187 ID=Msa0516480-mRNA-1:exon:17797;Parent=Msa0516480-mRNA-1
chr3_4 exon 67985783 67985893 67985783 ID=Msa0516480-mRNA-1:exon:17798;Parent=Msa0516480-mRNA-1
chr3_4 exon 67986873 67987131 67986873 ID=Msa0516480-mRNA-1:exon:17799;Parent=Msa0516480-mRNA-1
chr3_4 exon 67987253 67987362 67987253 ID=Msa0516480-mRNA-1:exon:17800;Parent=Msa0516480-mRNA-1
chr3_4 exon 67987453 67987507 67987453 ID=Msa0516480-mRNA-1:exon:17801;Parent=Msa0516480-mRNA-1
chr3_4 exon 67987600 67987632 67987600 ID=Msa0516480-mRNA-1:exon:17802;Parent=Msa0516480-mRNA-1
chr3_4 exon 67987712 67987758 67987712 ID=Msa0516480-mRNA-1:exon:17803;Parent=Msa0516480-mRNA-1
chr3_4 exon 67988095 67988417 67988095 ID=Msa0516480-mRNA-1:exon:17804;Parent=Msa0516480-mRNA-1
chr3_4 five_prime_UTR 67983964 67984441 67983964 ID=Msa0516480-mRNA-1:five_prime_utr;Parent=Msa0516480-mRNA-1
chr3_4 five_prime_UTR 67984963 67985091 67984963 ID=Msa0516480-mRNA-1:five_prime_utr;Parent=Msa0516480-mRNA-1
chr3_4 five_prime_UTR 67985187 67985308 67985187 ID=Msa0516480-mRNA-1:five_prime_utr;Parent=Msa0516480-mRNA-1
chr3_4 five_prime_UTR 67985783 67985893 67985783 ID=Msa0516480-mRNA-1:five_prime_utr;Parent=Msa0516480-mRNA-1
chr3_4 five_prime_UTR 67986873 67987038 67986873 ID=Msa0516480-mRNA-1:five_prime_utr;Parent=Msa0516480-mRNA-1
chr3_4 CDS 67987039 67987131 67987039 ID=Msa0516480-mRNA-1:cds;Parent=Msa0516480-mRNA-1
chr3_4 CDS 67987253 67987362 67987253 ID=Msa0516480-mRNA-1:cds;Parent=Msa0516480-mRNA-1
chr3_4 CDS 67987453 67987507 67987453 ID=Msa0516480-mRNA-1:cds;Parent=Msa0516480-mRNA-1
chr3_4 CDS 67987600 67987632 67987600 ID=Msa0516480-mRNA-1:cds;Parent=Msa0516480-mRNA-1
chr3_4 CDS 67987712 67987758 67987712 ID=Msa0516480-mRNA-1:cds;Parent=Msa0516480-mRNA-1
chr3_4 CDS 67988095 67988218 67988095 ID=Msa0516480-mRNA-1:cds;Parent=Msa0516480-mRNA-1
chr3_4 three_prime_UTR 67988219 67988417 67988219 ID=Msa0516480-mRNA-1:three_prime_utr;Parent=Msa0516480-mRNA-1
Gene Sequence

>Msa0516480

ATGCTTCCTAAGTGTTATCTACCTTTTGCGTGTGAAAAGGATGCTACAAAAAGGAGCTCAGGAAGGAAGATGGACAGAAAAGTTCATTTCCCGTTCAAAGATGACTTGGTTGTTGCACGCCCTGATATTTATCAAGTAACTCTTGGCTCAGATGCAGAATTTATAGTGTTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTCAGACGCAGTTTCTTTTGTGAGGGATCAACTACGAAAACATGGAAACACACAGCTAGCTTGTGAATCCCTTGCACAAGTCGTTTTGGACCAACGTACACAGGATAATGTCAGCATTATAATTGCCGATCTAGGGAAGACAGACTGGAAGAGTGTACCACTGCAGCAACAAAATGTCACATTTGAGCTAGTCCAAGCCCTAGCCACCGTTGGAATTGTGTCTATTGGAATCTGGTTTTCATCACAGCTTTCTTTATAG

Protein sequence

>Msa0516480

MLPKCYLPFACEKDATKRSSGRKMDRKVHFPFKDDLVVARPDIYQVTLGSDAEFIVLASDGLWDYMSSSDAVSFVRDQLRKHGNTQLACESLAQVVLDQRTQDNVSIIIADLGKTDWKSVPLQQQNVTFELVQALATVGIVSIGIWFSSQLSL*