AlfalfaGEDB | Msa0924540

M. sativa cultivar zhongmu-4 / Msa0924540

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924540	XP_013452956.1	92.913	508	36	0	1	508	1	508	0.0	919

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924540	sp\|F4KEW8\|NET4A_ARATH	25.954	524	287	13	8	508	113	558	1.21e-20	98.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0924540	0.839608	1.431495e-57	-8.615850e-47
Msa0028420	Msa0924540	0.805943	1.045546e-49	-8.615850e-47
Msa0028640	Msa0924540	0.808296	3.320341e-50	-8.615850e-47
Msa0031340	Msa0924540	0.831422	1.684548e-55	-8.615850e-47
Msa0032430	Msa0924540	0.806083	9.770516e-50	-8.615850e-47
Msa0074240	Msa0924540	0.815370	9.571228e-52	-8.615850e-47
Msa0078650	Msa0924540	0.800127	1.667454e-48	-8.615850e-47
Msa0079380	Msa0924540	0.818029	2.425518e-52	-8.615850e-47
Msa0089630	Msa0924540	0.837546	4.877517e-57	-8.615850e-47
Msa0094140	Msa0924540	0.806277	8.893206e-50	-8.615850e-47
Msa0094850	Msa0924540	0.802278	6.051361e-49	-8.615850e-47
Msa0110970	Msa0924540	0.818646	1.758862e-52	-8.615850e-47
Msa0118570	Msa0924540	0.809307	2.018381e-50	-8.615850e-47
Msa0650020	Msa0924540	0.813365	2.656341e-51	-8.615850e-47
Msa0677410	Msa0924540	0.804935	1.700924e-49	-8.615850e-47
Msa0682330	Msa0924540	0.823222	1.555999e-53	-8.615850e-47
Msa0683510	Msa0924540	0.801144	1.034354e-48	-8.615850e-47
Msa0683570	Msa0924540	0.823715	1.193112e-53	-8.615850e-47
Msa0727640	Msa0924540	0.804340	2.264395e-49	-8.615850e-47
Msa0749760	Msa0924540	0.809469	1.863395e-50	-8.615850e-47
Msa0754520	Msa0924540	0.818101	2.336874e-52	-8.615850e-47
Msa0765910	Msa0924540	0.816905	4.345685e-52	-8.615850e-47
Msa0767300	Msa0924540	0.817100	3.928675e-52	-8.615850e-47
Msa0770720	Msa0924540	0.815009	1.151252e-51	-8.615850e-47
Msa0828560	Msa0924540	0.826192	3.104000e-54	-8.615850e-47
Msa0833220	Msa0924540	0.815787	7.728640e-52	-8.615850e-47
Msa0124060	Msa0924540	0.810852	9.379210e-51	-8.615850e-47
Msa0157290	Msa0924540	0.839198	1.829300e-57	-8.615850e-47
Msa0168500	Msa0924540	0.822029	2.947313e-53	-8.615850e-47
Msa0172070	Msa0924540	0.800849	1.188303e-48	-8.615850e-47
Msa0225760	Msa0924540	0.809977	1.449388e-50	-8.615850e-47
Msa0366240	Msa0924540	0.809402	1.926522e-50	-8.615850e-47
Msa0369850	Msa0924540	0.814442	1.537100e-51	-8.615850e-47
Msa0392510	Msa0924540	0.800556	1.363743e-48	-8.615850e-47
Msa0393080	Msa0924540	0.808962	2.393363e-50	-8.615850e-47
Msa0395790	Msa0924540	0.803288	3.743868e-49	-8.615850e-47
Msa0410650	Msa0924540	0.840370	9.060455e-58	-8.615850e-47
Msa0417270	Msa0924540	0.803116	4.064886e-49	-8.615850e-47
Msa0417880	Msa0924540	0.832914	7.202477e-56	-8.615850e-47
Msa0436050	Msa0924540	0.802513	5.412836e-49	-8.615850e-47
Msa0440750	Msa0924540	0.808539	2.946924e-50	-8.615850e-47
Msa0464680	Msa0924540	0.808985	2.366055e-50	-8.615850e-47
Msa0468290	Msa0924540	0.808816	2.571279e-50	-8.615850e-47
Msa0243100	Msa0924540	0.822987	1.764632e-53	-8.615850e-47
Msa0283450	Msa0924540	0.807836	4.160673e-50	-8.615850e-47
Msa0283520	Msa0924540	0.800942	1.137306e-48	-8.615850e-47
Msa0287650	Msa0924540	0.823600	1.269461e-53	-8.615850e-47
Msa0292400	Msa0924540	0.818653	1.752390e-52	-8.615850e-47
Msa0300690	Msa0924540	0.810230	1.278249e-50	-8.615850e-47
Msa0302170	Msa0924540	0.804051	2.600191e-49	-8.615850e-47
Msa0306300	Msa0924540	0.802041	6.772946e-49	-8.615850e-47
Msa0330340	Msa0924540	0.800336	1.511796e-48	-8.615850e-47
Msa0332000	Msa0924540	0.802035	6.790665e-49	-8.615850e-47
Msa0339500	Msa0924540	0.811321	7.421244e-51	-8.615850e-47
Msa0357020	Msa0924540	0.809451	1.879713e-50	-8.615850e-47
Msa0359030	Msa0924540	0.801728	7.850396e-49	-8.615850e-47
Msa0363200	Msa0924540	0.800745	1.248033e-48	-8.615850e-47
Msa0488560	Msa0924540	0.800640	1.310643e-48	-8.615850e-47
Msa0490390	Msa0924540	0.808472	3.045031e-50	-8.615850e-47
Msa0498060	Msa0924540	0.806603	7.593411e-50	-8.615850e-47
Msa0507680	Msa0924540	0.831481	1.628938e-55	-8.615850e-47
Msa0546680	Msa0924540	0.824777	6.714831e-54	-8.615850e-47
Msa0569200	Msa0924540	0.837955	3.828320e-57	-8.615850e-47
Msa0601750	Msa0924540	0.812690	3.734703e-51	-8.615850e-47
Msa0844240	Msa0924540	0.811967	5.372309e-51	-8.615850e-47
Msa0861510	Msa0924540	0.839727	1.332791e-57	-8.615850e-47
Msa0861530	Msa0924540	0.822113	2.818411e-53	-8.615850e-47
Msa0861600	Msa0924540	0.837724	4.391404e-57	-8.615850e-47
Msa0871270	Msa0924540	0.809814	1.570776e-50	-8.615850e-47
Msa0880140	Msa0924540	0.836770	7.703505e-57	-8.615850e-47
Msa0924540	Msa1019430	0.805175	1.515343e-49	-8.615850e-47
Msa0924540	Msa1019470	0.801216	9.999435e-49	-8.615850e-47
Msa0924540	Msa1051830	0.807273	5.477665e-50	-8.615850e-47
Msa0924540	Msa1085200	0.836882	7.212118e-57	-8.615850e-47
Msa0924540	Msa1108160	0.804824	1.794143e-49	-8.615850e-47
Msa0924540	Msa1123380	0.806172	9.357015e-50	-8.615850e-47
Msa0924540	Msa1125940	0.817164	3.800144e-52	-8.615850e-47
Msa0924540	Msa1140210	0.800617	1.325305e-48	-8.615850e-47
Msa0924540	Msa1150700	-0.811867	5.647819e-51	-8.615850e-47
Msa0924540	Msa1151910	0.804029	2.627711e-49	-8.615850e-47
Msa0924540	Msa1189070	0.813191	2.900098e-51	-8.615850e-47
Msa0924540	Msa1199570	0.818288	2.119396e-52	-8.615850e-47
Msa0924540	Msa1199830	-0.806717	7.182817e-50	-8.615850e-47
Msa0924540	Msa1209460	0.813713	2.227074e-51	-8.615850e-47
Msa0924540	Msa1238930	0.815399	9.430639e-52	-8.615850e-47
Msa0924540	Msa1276660	0.813214	2.866736e-51	-8.615850e-47
Msa0924540	Msa1284550	0.809131	2.201670e-50	-8.615850e-47
Msa0924540	Msa1292830	0.803927	2.759249e-49	-8.615850e-47
Msa0924540	Msa1328710	0.814392	1.577055e-51	-8.615850e-47
Msa0924540	Msa1346370	0.831188	1.923005e-55	-8.615850e-47
Msa0924540	Msa1382620	0.810704	1.009838e-50	-8.615850e-47
Msa0924540	Msa1409870	0.808705	2.715862e-50	-8.615850e-47
Msa0924540	Msa1446810	0.805754	1.146021e-49	-8.615850e-47
Msa0924540	Msa1460020	0.818649	1.756034e-52	-8.615850e-47
Msa0924540	Msa1461300	0.827978	1.160360e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924540	MtrunA17_Chr6g0483761	92.913	508	36	0	1	508	1	508	0.0	919
Msa0924540	MtrunA17_Chr3g0128621	43.031	574	218	11	1	497	1	542	1.49e-108	333
Msa0924540	MtrunA17_Chr3g0128591	45.909	440	179	11	30	447	2	404	4.69e-87	276
Msa0924540	MtrunA17_Chr8g0350861	49.521	313	125	5	200	508	2	285	1.82e-76	242
Msa0924540	MtrunA17_Chr5g0432781	31.923	520	314	9	2	508	112	604	1.48e-59	206
Msa0924540	MtrunA17_Chr8g0350851	50.000	220	101	3	282	500	14	225	1.24e-52	178
Msa0924540	MtrunA17_Chr3g0107891	27.043	514	279	11	20	508	94	536	1.54e-33	133
Msa0924540	MtrunA17_Chr3g0128561	59.722	72	28	1	115	186	46	116	8.60e-15	70.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924540	AT5G05180.3	34.448	299	157	5	236	506	115	402	2.69e-40	150
Msa0924540	AT5G05180.1	34.448	299	157	5	236	506	145	432	3.40e-40	150
Msa0924540	AT5G05180.2	43.137	204	84	3	331	506	209	408	1.25e-37	143
Msa0924540	AT5G58320.5	25.954	524	287	13	8	508	113	558	1.23e-21	98.6
Msa0924540	AT5G58320.2	25.954	524	287	13	8	508	113	558	1.23e-21	98.6
Msa0924540	AT2G30500.2	28.070	399	206	13	117	507	189	514	9.84e-21	95.9
Msa0924540	AT2G30500.1	28.070	399	206	13	117	507	189	514	9.84e-21	95.9
Msa0924540	AT2G30500.3	28.070	399	206	13	117	507	188	513	1.46e-20	95.1
Msa0924540	AT3G10880.2	55.435	92	40	1	396	486	188	279	1.89e-18	86.3
Msa0924540	AT3G10880.4	55.435	92	40	1	396	486	188	279	1.89e-18	86.3
Msa0924540	AT3G10880.3	55.435	92	40	1	396	486	226	317	3.06e-18	86.3
Msa0924540	AT3G10880.1	55.435	92	40	1	396	486	226	317	3.06e-18	86.3
Msa0924540	AT5G58320.3	25.356	351	220	9	8	338	70	398	1.35e-11	67.0
Msa0924540	AT5G58320.1	25.356	351	220	9	8	338	113	441	3.82e-11	65.9
Msa0924540	AT5G58320.4	25.356	351	220	9	8	338	113	441	3.82e-11	65.9

Find 125 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCAATTGTTCCACCAAATT+TGG	0.117641	6_2:+66780406	None:intergenic
CATTGTTTCATAGATCTTTC+TGG	0.153041	6_2:-66779445	Msa0924540:three_prime_UTR
GGATTAGCATATCTCATATT+TGG	0.173876	6_2:-66779070	Msa0924540:three_prime_UTR
TTAACTTGTTTGCTAATAAA+TGG	0.193584	6_2:+66780017	None:intergenic
ATGGAGGGCACTGGTGATTT+TGG	0.209159	6_2:-66781000	Msa0924540:CDS
CTCTTCTCTCTCTACGATTC+AGG	0.232793	6_2:-66783965	Msa0924540:intron
GGAGACTCATGTTCCAAATT+TGG	0.236051	6_2:-66780419	Msa0924540:CDS
TGAAAGCTTAAGTTTCAAAT+TGG	0.275719	6_2:+66780588	None:intergenic
GGGTATGTTTGATTGGTATA+GGG	0.283375	6_2:-66779163	Msa0924540:three_prime_UTR
AGGCGAAATCAGTTCTTTAA+AGG	0.292177	6_2:-66779930	Msa0924540:CDS
GGATGAACTTGAGCATAAAA+AGG	0.292373	6_2:-66780479	Msa0924540:CDS
GCGATGTGAAGCTGAAAATT+TGG	0.295896	6_2:-66779993	Msa0924540:CDS
AGACGATCAAATAGAAAATA+TGG	0.304491	6_2:-66779765	Msa0924540:CDS
GGACCAGAAGCTGTTGAAAT+TGG	0.304911	6_2:-66779221	Msa0924540:three_prime_UTR
TGGTCCTCAACCCGTCAATT+TGG	0.305441	6_2:-66780902	Msa0924540:CDS
GTCACTTAAAACTTTCTGTT+TGG	0.308667	6_2:-66784096	Msa0924540:five_prime_UTR
TCCAAATTTGGTGGAACAAT+TGG	0.319106	6_2:-66780407	Msa0924540:CDS
AATAGGATGATTGAAGAAAA+AGG	0.323453	6_2:-66784193	Msa0924540:five_prime_UTR
TTAGAATGGCAGCTTGATTC+AGG	0.324320	6_2:-66780253	Msa0924540:CDS
GAAAGAATTAGCACTGAATA+AGG	0.325177	6_2:-66780500	Msa0924540:CDS
TGGGTATGTTTGATTGGTAT+AGG	0.332721	6_2:-66779164	Msa0924540:three_prime_UTR
GCATATCTCATATTTGGTTA+TGG	0.342496	6_2:-66779064	Msa0924540:three_prime_UTR
TGAAATGAAAAGTGAGGAAA+TGG	0.350227	6_2:+66784024	None:intergenic
TGATTTGGAAGCTGTGAATA+AGG	0.353331	6_2:-66779885	Msa0924540:CDS
TCATCAGAGAAGTAATGATT+TGG	0.361754	6_2:-66779900	Msa0924540:CDS
TTCTGGTATGGAGTATAATA+TGG	0.373850	6_2:+66780943	None:intergenic
CACTCTCTTGTGCGCGAAGC+TGG	0.374202	6_2:+66779729	None:intergenic
ACTTCTGCAATCCCTGCTTC+TGG	0.382177	6_2:+66780926	None:intergenic
GGCCACTAGCATGTGAAAAT+AGG	0.385723	6_2:-66784210	Msa0924540:five_prime_UTR
AAAGACAAAACCAGTTTGTT+GGG	0.390775	6_2:-66780681	Msa0924540:CDS
GTGTCTTGGGTATGTTTGAT+TGG	0.393299	6_2:-66779170	Msa0924540:three_prime_UTR
ATTTATTAGCAAACAAGTTA+AGG	0.393675	6_2:-66780015	Msa0924540:CDS
AGACAACTGAATGTAACTTT+AGG	0.414724	6_2:+66779478	None:intergenic
TTCCTCCCTCCCCAACAAAC+TGG	0.416008	6_2:+66780671	None:intergenic
ATACCAATTTCAACAGCTTC+TGG	0.417542	6_2:+66779218	None:intergenic
TGCAATCCCTGCTTCTGGTA+TGG	0.419352	6_2:+66780931	None:intergenic
GAAAGACAAAACCAGTTTGT+TGG	0.429529	6_2:-66780682	Msa0924540:CDS
CAAGTGAGAAACACAGTTGC+CGG	0.431096	6_2:+66779573	None:intergenic
TTCTTTCAGCTTACCTTGAG+TGG	0.435903	6_2:+66780720	None:intergenic
GACCTCAACACTGGAGGAAT+GGG	0.440516	6_2:-66780050	Msa0924540:CDS
CTAGATAATATTTCATGAAA+AGG	0.443688	6_2:+66779295	None:intergenic
TGCCACGATTGATAAACTTA+AGG	0.449422	6_2:-66779804	Msa0924540:CDS
TAATTTATTAGTTGCAGTGT+TGG	0.453323	6_2:+66779039	None:intergenic
TTTAAGTGACAGAGAAGAGA+AGG	0.459167	6_2:+66784109	None:intergenic
AAGTCCAAATTGACGGGTTG+AGG	0.461874	6_2:+66780898	None:intergenic
TTGGACTTCTCTCCTAGCTC+AGG	0.462175	6_2:-66780883	Msa0924540:CDS
GAAGAAGTTCATTAAAATTG+AGG	0.462644	6_2:-66780626	Msa0924540:CDS
AAATTTACAAGTTGGAAGAC+AGG	0.466826	6_2:-66780222	Msa0924540:CDS
AAGAGAAGAGGGAGGCAATC+CGG	0.472016	6_2:-66779592	Msa0924540:CDS
AAAATCAAAATTAAAACATC+GGG	0.472390	6_2:-66784145	Msa0924540:five_prime_UTR
AAATTTGGTGGAACAATTGG+AGG	0.473827	6_2:-66780404	Msa0924540:CDS
TGAAACTAACCTTGAAATTG+AGG	0.476440	6_2:-66780179	Msa0924540:CDS
GCTGTATGCTACACAACAAA+TGG	0.476775	6_2:-66779960	Msa0924540:CDS
TCTCAAAAGCATGATGCATA+AGG	0.481005	6_2:-66779264	Msa0924540:three_prime_UTR
AAGCAGGGATTGCAGAAGTC+TGG	0.482361	6_2:-66780922	Msa0924540:CDS
TCTTGACAAAGAAAGTTCAT+TGG	0.485728	6_2:-66780971	Msa0924540:CDS
TTTCCTGTGCCACTTCAAGC+TGG	0.485925	6_2:+66780287	None:intergenic
CAGAAAGCAAATTTACAAGT+TGG	0.488028	6_2:-66780230	Msa0924540:CDS
GAAATGGAACAAATGAGAAA+AGG	0.493776	6_2:+66784040	None:intergenic
AGAAGAGAAGGAAGTGATGT+GGG	0.493792	6_2:+66784121	None:intergenic
TAGCTCTGCCGCTTCTCAAA+AGG	0.495879	6_2:-66780854	Msa0924540:CDS
CTTCATCATTTGATATCTTG+AGG	0.496814	6_2:+66780368	None:intergenic
TGACCTCAACACTGGAGGAA+TGG	0.500142	6_2:-66780051	Msa0924540:CDS
CAATCTCAGATGGAGGGCAC+TGG	0.502676	6_2:-66781009	Msa0924540:intron
GCAAGATTAAGAAAGGAACT+TGG	0.511927	6_2:-66780343	Msa0924540:CDS
GGTATGTTTGATTGGTATAG+GGG	0.516498	6_2:-66779162	Msa0924540:three_prime_UTR
AGTTGGAAGACAGGATTACA+TGG	0.516641	6_2:-66780213	Msa0924540:CDS
CGCGAAGCTGGATAAGCTCT+CGG	0.518288	6_2:+66779741	None:intergenic
AAACTAGCAATGTGTGTCTT+GGG	0.519239	6_2:-66779183	Msa0924540:three_prime_UTR
CTCTGCCGCTTCTCAAAAGG+AGG	0.519691	6_2:-66780851	Msa0924540:CDS
CAACTGAATGTAACTTTAGG+AGG	0.520179	6_2:+66779481	None:intergenic
TTATACTCCATACCAGAAGC+AGG	0.522141	6_2:-66780938	Msa0924540:CDS
CTATAACGGTATGACTCCTA+TGG	0.524652	6_2:+66779504	None:intergenic
GAATATTGTGATCTCCGATC+GGG	0.528397	6_2:-66779618	Msa0924540:CDS
AGCCTTAAGTTTATCAATCG+TGG	0.528872	6_2:+66779802	None:intergenic
TGAAGTTGCAAGATTAAGAA+AGG	0.532063	6_2:-66780350	Msa0924540:CDS
TAAACTAGCAATGTGTGTCT+TGG	0.536320	6_2:-66779184	Msa0924540:three_prime_UTR
CAAGATTAAGAAAGGAACTT+GGG	0.540440	6_2:-66780342	Msa0924540:CDS
AAAATGTGACTAAATTAGAA+TGG	0.541639	6_2:-66780267	Msa0924540:CDS
CAAAACCAGTTTGTTGGGGA+GGG	0.542348	6_2:-66780676	Msa0924540:CDS
GGATCAAATGCATGATGTGC+AGG	0.543842	6_2:-66780143	Msa0924540:CDS
CAAAATCAAAATTAAAACAT+CGG	0.543950	6_2:-66784146	Msa0924540:five_prime_UTR
AGGAGAGAAGTCCAAATTGA+CGG	0.546664	6_2:+66780891	None:intergenic
AGACCAGCTTGAAGTGGCAC+AGG	0.547887	6_2:-66780290	Msa0924540:CDS
CCTCTTCTCTTCATCCCGAT+CGG	0.548058	6_2:+66779604	None:intergenic
AAATAGTACACAACCCATGC+AGG	0.549824	6_2:+66779367	None:intergenic
AGAGTCAGTTTCAGAATCAG+AGG	0.550792	6_2:+66780801	None:intergenic
GAGCTAACACCACCTGAGCT+AGG	0.552383	6_2:+66780871	None:intergenic
GAGAAGAGAAGGAAGTGATG+TGG	0.556005	6_2:+66784120	None:intergenic
AACCAGTTTGTTGGGGAGGG+AGG	0.556196	6_2:-66780673	Msa0924540:CDS
GTAACTTTAGGAGGCTATAA+CGG	0.556469	6_2:+66779490	None:intergenic
AACACAATTGACCTCAACAC+TGG	0.559176	6_2:-66780059	Msa0924540:CDS
GACTCATGTTCCAAATTTGG+TGG	0.560411	6_2:-66780416	Msa0924540:CDS
GCTAAACAAAACATCCTGCA+TGG	0.564062	6_2:-66779381	Msa0924540:three_prime_UTR
GGAGAGAAGTCCAAATTGAC+GGG	0.568151	6_2:+66780892	None:intergenic
AGAGAGTGAAATGAAAAGTG+AGG	0.570811	6_2:+66784018	None:intergenic
CAGTATTCACCGCCGTGCCA+TGG	0.572576	6_2:+66780755	None:intergenic
GACGATGAAGGAACCACTCA+AGG	0.572786	6_2:-66780733	Msa0924540:CDS
TTTGGTGGAACAATTGGAGG+TGG	0.574711	6_2:-66780401	Msa0924540:CDS
CTCCCATTCCTCCAGTGTTG+AGG	0.578084	6_2:+66780048	None:intergenic
ACAAAACCAGTTTGTTGGGG+AGG	0.578682	6_2:-66780677	Msa0924540:CDS
CTTACTGTCAAAATATGTAG+TGG	0.579102	6_2:-66779112	Msa0924540:three_prime_UTR
CGATCGGGATGAAGAGAAGA+GGG	0.583720	6_2:-66779603	Msa0924540:CDS
GACTTCTCTCCTAGCTCAGG+TGG	0.584402	6_2:-66780880	Msa0924540:CDS
TCACTTGATCACTACAAGAG+TGG	0.587379	6_2:-66779557	Msa0924540:CDS
TTTGTCTTTCGGTATCAGCA+AGG	0.592493	6_2:+66780695	None:intergenic
CTAAACAAAACATCCTGCAT+GGG	0.595713	6_2:-66779380	Msa0924540:three_prime_UTR
AGAATATTGTGATCTCCGAT+CGG	0.598633	6_2:-66779619	Msa0924540:CDS
ATTGCAAGACCAGCTTGAAG+TGG	0.606605	6_2:-66780296	Msa0924540:CDS
AAGACAAAACCAGTTTGTTG+GGG	0.607800	6_2:-66780680	Msa0924540:CDS
TCCTCACAATCTCAGATGGA+GGG	0.612527	6_2:-66781015	Msa0924540:intron
CCGATCGGGATGAAGAGAAG+AGG	0.612539	6_2:-66779604	Msa0924540:CDS
GAATCAAAATGAGAAAAGTG+AGG	0.626506	6_2:-66780542	Msa0924540:CDS
AATCAAAATGAGAAAAGTGA+GGG	0.627000	6_2:-66780541	Msa0924540:CDS
GTCAGTTTCAGAATCAGAGG+AGG	0.631262	6_2:+66780804	None:intergenic
TGTAATTCATTACCATGGCA+CGG	0.633012	6_2:-66780767	Msa0924540:CDS
ACACAACAAATGGTTATGCA+AGG	0.640355	6_2:-66779950	Msa0924540:CDS
GCGGTGAATACTGACGATGA+AGG	0.643067	6_2:-66780745	Msa0924540:CDS
TATACTCCATACCAGAAGCA+GGG	0.646612	6_2:-66780937	Msa0924540:CDS
ACAATTGACCTCAACACTGG+AGG	0.650713	6_2:-66780056	Msa0924540:CDS
AAGTCTGTAATTCATTACCA+TGG	0.664113	6_2:-66780772	Msa0924540:CDS
GAAGAGAAGGAAGTGATGTG+GGG	0.664612	6_2:+66784122	None:intergenic
TCGGGATGAAGAGAAGAGGG+AGG	0.677476	6_2:-66779600	Msa0924540:CDS
TCTGCCGCTTCTCAAAAGGA+GGG	0.690022	6_2:-66780850	Msa0924540:CDS
AATTCATTACCATGGCACGG+CGG	0.798519	6_2:-66780764	Msa0924540:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATCAATAATAATTTATAAGT+CGG	-	chr6_2:66781763-66781782	Msa0924540:intron	10.0%
!!!	GATGTTTTAATTTTGATTTT+GGG	+	chr6_2:66779139-66779158	None:intergenic	15.0%
!!	CAAAATCAAAATTAAAACAT+CGG	-	chr6_2:66779138-66779157	Msa0924540:three_prime_UTR	15.0%
!!	AAAATCAAAATTAAAACATC+GGG	-	chr6_2:66779139-66779158	Msa0924540:three_prime_UTR	15.0%
!!	AAAAAAAATATGAGTTCATT+TGG	-	chr6_2:66779608-66779627	Msa0924540:CDS	15.0%
!!!	ATGAAATTTTTAAGTATGTT+TGG	-	chr6_2:66779824-66779843	Msa0924540:CDS	15.0%
!!!	ATTTTTTCCTATTTGAAAAA+TGG	+	chr6_2:66780141-66780160	None:intergenic	15.0%
!!!	ATCATTTTAGTCTTTAAAAT+TGG	-	chr6_2:66780846-66780865	Msa0924540:CDS	15.0%
!!!	TCATTTTAGTCTTTAAAATT+GGG	-	chr6_2:66780847-66780866	Msa0924540:CDS	15.0%
!!!	AATTTGTCATTTCAATAATT+TGG	-	chr6_2:66780947-66780966	Msa0924540:CDS	15.0%
!!!	ATTTGTCATTTCAATAATTT+GGG	-	chr6_2:66780948-66780967	Msa0924540:CDS	15.0%
!!	TTAACATCTTAAAATTATAG+AGG	+	chr6_2:66780989-66781008	None:intergenic	15.0%
!!	GTAGATTTAATATTTAATGA+TGG	+	chr6_2:66781112-66781131	None:intergenic	15.0%
!!	TTTACCTTAATATTTAATGA+TGG	+	chr6_2:66781174-66781193	None:intergenic	15.0%
!!!	TAATTTTGATTTTGGGATTT+GGG	+	chr6_2:66779132-66779151	None:intergenic	20.0%
!!!	TTAATTTTGATTTTGGGATT+TGG	+	chr6_2:66779133-66779152	None:intergenic	20.0%
!!!	CGATGTTTTAATTTTGATTT+TGG	+	chr6_2:66779140-66779159	None:intergenic	20.0%
!!!	AGAATTGATTCTAATATGTT+TGG	+	chr6_2:66780049-66780068	None:intergenic	20.0%
!!!	ATAATTGATTTTGACATGTT+TGG	-	chr6_2:66780175-66780194	Msa0924540:CDS	20.0%
!!	TACAATGAGAAAAATTGATT+TGG	+	chr6_2:66780336-66780355	None:intergenic	20.0%
!!!	ACAAATTTTCATATACTCTA+GGG	-	chr6_2:66780674-66780693	Msa0924540:CDS	20.0%
!!	ATACATACATTTACATCAAA+AGG	+	chr6_2:66780825-66780844	None:intergenic	20.0%
!!!	CATTTTAGTCTTTAAAATTG+GGG	-	chr6_2:66780848-66780867	Msa0924540:CDS	20.0%
!!!	ATTTTAGTCTTTAAAATTGG+GGG	-	chr6_2:66780849-66780868	Msa0924540:CDS	20.0%
!!!	TTTGTCATTTCAATAATTTG+GGG	-	chr6_2:66780949-66780968	Msa0924540:CDS	20.0%
!!	ATGACCATCATTAAATATTA+AGG	-	chr6_2:66781105-66781124	Msa0924540:intron	20.0%
!!	ATTGTAGTAATAAGACAATT+TGG	-	chr6_2:66781554-66781573	Msa0924540:intron	20.0%
!!!	TTTGTCATTTCATAAATTTG+AGG	-	chr6_2:66781639-66781658	Msa0924540:intron	20.0%
!!!	TTGTCATTTCATAAATTTGA+GGG	-	chr6_2:66781640-66781659	Msa0924540:intron	20.0%
!!!	TTGATATCTATTTTGATTGT+AGG	-	chr6_2:66781985-66782004	Msa0924540:intron	20.0%
!!	TCATGATACATTTATTCATT+TGG	-	chr6_2:66782137-66782156	Msa0924540:intron	20.0%
!!	CATGATACATTTATTCATTT+GGG	-	chr6_2:66782138-66782157	Msa0924540:intron	20.0%
!!	AAAATGTGACTAAATTAGAA+TGG	-	chr6_2:66783017-66783036	Msa0924540:intron	20.0%
!!!	TTAACTTGTTTGCTAATAAA+TGG	+	chr6_2:66783270-66783289	None:intergenic	20.0%
!!	ATTTATTAGCAAACAAGTTA+AGG	-	chr6_2:66783269-66783288	Msa0924540:intron	20.0%
!!!	TTGTGTACTATTTCTTTTTT+GGG	-	chr6_2:66783927-66783946	Msa0924540:intron	20.0%
!!	CTAGATAATATTTCATGAAA+AGG	+	chr6_2:66783992-66784011	None:intergenic	20.0%
!!!	GTAATTTTGTTATGTTTGTT+AGG	-	chr6_2:66784042-66784061	Msa0924540:five_prime_UTR	20.0%
!	AATAGGATGATTGAAGAAAA+AGG	-	chr6_2:66779091-66779110	Msa0924540:three_prime_UTR	25.0%
!!!	TTGTTCAATTTCAAGTTCTT+TGG	-	chr6_2:66779412-66779431	Msa0924540:three_prime_UTR	25.0%
!!!	GAATTTTTAGATCTTAAACC+TGG	-	chr6_2:66779518-66779537	Msa0924540:CDS	25.0%
!	ATTTATGTAGAACATACGAT+CGG	+	chr6_2:66779572-66779591	None:intergenic	25.0%
!	TCATAATCTAAGTGTATGTT+TGG	+	chr6_2:66780112-66780131	None:intergenic	25.0%
!!!	ACTAGTTCCATTTTTCAAAT+AGG	-	chr6_2:66780131-66780150	Msa0924540:CDS	25.0%
!	ATAGGAAAAAATGATTCTAG+AGG	-	chr6_2:66780149-66780168	Msa0924540:CDS	25.0%
!!!	ATAAGTTTTATGAGACTGTT+CGG	-	chr6_2:66780414-66780433	Msa0924540:CDS	25.0%
!	TTATCTAAGCTTATACCTAA+GGG	-	chr6_2:66780563-66780582	Msa0924540:CDS	25.0%
!	AGAGTATATGAAAATTTGTC+TGG	+	chr6_2:66780673-66780692	None:intergenic	25.0%
!!	GACAAATTTTCATATACTCT+AGG	-	chr6_2:66780673-66780692	Msa0924540:CDS	25.0%
!	TTACTCCAAATATTATGTGA+TGG	-	chr6_2:66780787-66780806	Msa0924540:CDS	25.0%
!!	CTTTAATTTCAGGACTTATT+CGG	+	chr6_2:66780909-66780928	None:intergenic	25.0%
!	CAAATTATTCCATCAAATAC+CGG	+	chr6_2:66780933-66780952	None:intergenic	25.0%
!!	TTGTCATTTCAATAATTTGG+GGG	-	chr6_2:66780950-66780969	Msa0924540:CDS	25.0%
!!	AGAAAAAATGATGATGCTTT+AGG	-	chr6_2:66781437-66781456	Msa0924540:intron	25.0%
!!	GAAAAAATGATGATGCTTTA+GGG	-	chr6_2:66781438-66781457	Msa0924540:intron	25.0%
!	AAAGGTTTACTCCAAATATT+AGG	-	chr6_2:66780781-66780800	Msa0924540:CDS	25.0%
!	CATACATGTACATATAGAAA+GGG	+	chr6_2:66781512-66781531	None:intergenic	25.0%
!	ACATACATGTACATATAGAA+AGG	+	chr6_2:66781513-66781532	None:intergenic	25.0%
!	TCATTTGTCAAAGCAAAATA+AGG	+	chr6_2:66781791-66781810	None:intergenic	25.0%
!	TTGTATAAAATTATGTCTCC+TGG	+	chr6_2:66781865-66781884	None:intergenic	25.0%
!	CAAACATCAAATAATCAACA+AGG	+	chr6_2:66782178-66782197	None:intergenic	25.0%
!!	CTTGTTGATTATTTGATGTT+TGG	-	chr6_2:66782176-66782195	Msa0924540:intron	25.0%
!	TGATTATTTGATGTTTGGAA+TGG	-	chr6_2:66782181-66782200	Msa0924540:intron	25.0%
!	GAAGAAGTTCATTAAAATTG+AGG	-	chr6_2:66782658-66782677	Msa0924540:intron	25.0%
!	TGAAAGCTTAAGTTTCAAAT+TGG	+	chr6_2:66782699-66782718	None:intergenic	25.0%
!	AATCAAAATGAGAAAAGTGA+GGG	-	chr6_2:66782743-66782762	Msa0924540:intron	25.0%
!	AGACGATCAAATAGAAAATA+TGG	-	chr6_2:66783519-66783538	Msa0924540:intron	25.0%
!!!	GTTGTGTACTATTTCTTTTT+TGG	-	chr6_2:66783926-66783945	Msa0924540:intron	25.0%
!!!	ATCATGCTTTTGAGAAATAA+AGG	+	chr6_2:66784015-66784034	None:intergenic	25.0%
	GATGATTGAAGAAAAAGGAA+AGG	-	chr6_2:66779096-66779115	Msa0924540:three_prime_UTR	30.0%
	GTCACTTAAAACTTTCTGTT+TGG	-	chr6_2:66779188-66779207	Msa0924540:three_prime_UTR	30.0%
	GAAATGGAACAAATGAGAAA+AGG	+	chr6_2:66779247-66779266	None:intergenic	30.0%
	TGAAATGAAAAGTGAGGAAA+TGG	+	chr6_2:66779263-66779282	None:intergenic	30.0%
!	GTTCTTTGAATTTTGTGCTT+CGG	-	chr6_2:66779471-66779490	Msa0924540:three_prime_UTR	30.0%
	AGCTATAAATCTTAGCTTCA+AGG	-	chr6_2:66779981-66780000	Msa0924540:CDS	30.0%
!!!	TGTTTGGTTCTACTTTTAGA+GGG	+	chr6_2:66780096-66780115	None:intergenic	30.0%
!!!	ATGTTTGGTTCTACTTTTAG+AGG	+	chr6_2:66780097-66780116	None:intergenic	30.0%
	TAGAACCAAACATAAACTAG+AGG	-	chr6_2:66780354-66780373	Msa0924540:CDS	30.0%
	TCAAATAAGTCAATCCAAAC+AGG	+	chr6_2:66780380-66780399	None:intergenic	30.0%
!!	TAAGTTTTATGAGACTGTTC+GGG	-	chr6_2:66780415-66780434	Msa0924540:CDS	30.0%
!	ACAGCTTATGACAATTTTCA+TGG	-	chr6_2:66780451-66780470	Msa0924540:CDS	30.0%
!	CAGCTTATGACAATTTTCAT+GGG	-	chr6_2:66780452-66780471	Msa0924540:CDS	30.0%
	CTTATCTAAGCTTATACCTA+AGG	-	chr6_2:66780562-66780581	Msa0924540:CDS	30.0%
	CCTGTTTAGATAAACAACTT+TGG	+	chr6_2:66780620-66780639	None:intergenic	30.0%
	CCAAAGTTGTTTATCTAAAC+AGG	-	chr6_2:66780617-66780636	Msa0924540:CDS	30.0%
	CAACATGTAAGCATAAACTA+GGG	+	chr6_2:66780643-66780662	None:intergenic	30.0%
	CTAGTTTATGCTTACATGTT+GGG	-	chr6_2:66780642-66780661	Msa0924540:CDS	30.0%
	CTATTACCTTATCTCATACT+TGG	+	chr6_2:66780741-66780760	None:intergenic	30.0%
	GCAGGTCTAAATTGAATTAA+AGG	-	chr6_2:66780763-66780782	Msa0924540:CDS	30.0%
	CTTAGCCATCACATAATATT+TGG	+	chr6_2:66780795-66780814	None:intergenic	30.0%
	TATTCGGCATTTCATAAATC+TGG	+	chr6_2:66780893-66780912	None:intergenic	30.0%
	TAAGTCCTGAAATTAAAGAC+CGG	-	chr6_2:66780911-66780930	Msa0924540:CDS	30.0%
!	AAATACCGGTCTTTAATTTC+AGG	+	chr6_2:66780919-66780938	None:intergenic	30.0%
	AATTAAAGACCGGTATTTGA+TGG	-	chr6_2:66780921-66780940	Msa0924540:CDS	30.0%
	TTCTACTATTCAGTCTTACA+TGG	+	chr6_2:66781421-66781440	None:intergenic	30.0%
	TTACTCCAAATATTAGGTGA+TGG	-	chr6_2:66781476-66781495	Msa0924540:intron	30.0%
	AATTTCGAAGACCAAAATGA+TGG	-	chr6_2:66781683-66781702	Msa0924540:intron	30.0%
!	CAATGACTATACCATCATTT+TGG	+	chr6_2:66781697-66781716	None:intergenic	30.0%
!	TTTTGCTTTGACAAATGAGT+TGG	-	chr6_2:66781793-66781812	Msa0924540:intron	30.0%
	TTTGCTTTGACAAATGAGTT+GGG	-	chr6_2:66781794-66781813	Msa0924540:intron	30.0%
!	TAAAGTGTCATCTGTTTCAA+AGG	-	chr6_2:66781891-66781910	Msa0924540:intron	30.0%
	AAGGAGTAAATAAGTACTTG+AGG	-	chr6_2:66781910-66781929	Msa0924540:intron	30.0%
	ATGTATCATGAACAATAGAC+TGG	+	chr6_2:66782128-66782147	None:intergenic	30.0%
	TCTTGACAAAGAAAGTTCAT+TGG	-	chr6_2:66782313-66782332	Msa0924540:intron	30.0%
	TTCTGGTATGGAGTATAATA+TGG	+	chr6_2:66782344-66782363	None:intergenic	30.0%
	AAGTCTGTAATTCATTACCA+TGG	-	chr6_2:66782512-66782531	Msa0924540:intron	30.0%
!!!	AACAAACTGGTTTTGTCTTT+CGG	+	chr6_2:66782603-66782622	None:intergenic	30.0%
!	AAAGACAAAACCAGTTTGTT+GGG	-	chr6_2:66782603-66782622	Msa0924540:intron	30.0%
	GAATCAAAATGAGAAAAGTG+AGG	-	chr6_2:66782742-66782761	Msa0924540:intron	30.0%
!	GAAAGAATTAGCACTGAATA+AGG	-	chr6_2:66782784-66782803	Msa0924540:intron	30.0%
	GATGAACTTGAGCATAAAAA+GGG	-	chr6_2:66782806-66782825	Msa0924540:intron	30.0%
	CTTCATCATTTGATATCTTG+AGG	+	chr6_2:66782919-66782938	None:intergenic	30.0%
	TGAAGTTGCAAGATTAAGAA+AGG	-	chr6_2:66782934-66782953	Msa0924540:intron	30.0%
	CAAGATTAAGAAAGGAACTT+GGG	-	chr6_2:66782942-66782961	Msa0924540:intron	30.0%
	CAGAAAGCAAATTTACAAGT+TGG	-	chr6_2:66783054-66783073	Msa0924540:intron	30.0%
!	AAATTTACAAGTTGGAAGAC+AGG	-	chr6_2:66783062-66783081	Msa0924540:intron	30.0%
	TGAAACTAACCTTGAAATTG+AGG	-	chr6_2:66783105-66783124	Msa0924540:intron	30.0%
	TCATCAGAGAAGTAATGATT+TGG	-	chr6_2:66783384-66783403	Msa0924540:intron	30.0%
	AGTAGAAGAACTTGAAAAAG+AGG	-	chr6_2:66783633-66783652	Msa0924540:intron	30.0%
!	GAAATTCTTCAAGCTTTTAC+TGG	-	chr6_2:66783757-66783776	Msa0924540:intron	30.0%
	AGACAACTGAATGTAACTTT+AGG	+	chr6_2:66783809-66783828	None:intergenic	30.0%
	CATTGTTTCATAGATCTTTC+TGG	-	chr6_2:66783839-66783858	Msa0924540:intron	30.0%
	CTTACTGTCAAAATATGTAG+TGG	-	chr6_2:66784172-66784191	Msa0924540:five_prime_UTR	30.0%
!	GGATTAGCATATCTCATATT+TGG	-	chr6_2:66784214-66784233	Msa0924540:five_prime_UTR	30.0%
	GCATATCTCATATTTGGTTA+TGG	-	chr6_2:66784220-66784239	Msa0924540:five_prime_UTR	30.0%
!	CCTCCTTTTCAAAATCAAGT+CGG	+	chr6_2:66779056-66779075	None:intergenic	35.0%
!	ATCCTATTTTCACATGCTAG+TGG	+	chr6_2:66779079-66779098	None:intergenic	35.0%
	GATTGAAGAAAAAGGAAAGG+CGG	-	chr6_2:66779099-66779118	Msa0924540:three_prime_UTR	35.0%
	ATTGAAGAAAAAGGAAAGGC+GGG	-	chr6_2:66779100-66779119	Msa0924540:three_prime_UTR	35.0%
	TTTAAGTGACAGAGAAGAGA+AGG	+	chr6_2:66779178-66779197	None:intergenic	35.0%
	AGAGAGTGAAATGAAAAGTG+AGG	+	chr6_2:66779269-66779288	None:intergenic	35.0%
	TTAAACCTGGAAATGTGTGA+TGG	-	chr6_2:66779531-66779550	Msa0924540:CDS	35.0%
!!	GATCTTGAGTGAGTTGATTA+TGG	-	chr6_2:66779866-66779885	Msa0924540:CDS	35.0%
!!!	GTTTGGTTCTACTTTTAGAG+GGG	+	chr6_2:66780095-66780114	None:intergenic	35.0%
!!	CTCTCGAGTAGAATTAGTTT+TGG	-	chr6_2:66780201-66780220	Msa0924540:CDS	35.0%
	CTTTGGCAGCTTATATACAA+GGG	+	chr6_2:66780603-66780622	None:intergenic	35.0%
	ACTTTGGCAGCTTATATACA+AGG	+	chr6_2:66780604-66780623	None:intergenic	35.0%
	CCAACATGTAAGCATAAACT+AGG	+	chr6_2:66780644-66780663	None:intergenic	35.0%
	CCTAGTTTATGCTTACATGT+TGG	-	chr6_2:66780641-66780660	Msa0924540:CDS	35.0%
	ATCAGACCAAGTATGAGATA+AGG	-	chr6_2:66780732-66780751	Msa0924540:CDS	35.0%
	TGAGATAAGGTAATAGTTGC+AGG	-	chr6_2:66780745-66780764	Msa0924540:CDS	35.0%
	CTATCACACTCTTCTATTCT+AGG	+	chr6_2:66781013-66781032	None:intergenic	35.0%
	CATTGCCATCACCTAATATT+TGG	+	chr6_2:66781484-66781503	None:intergenic	35.0%
!	TTTGGTCTTCGAAATTGTAG+AGG	+	chr6_2:66781679-66781698	None:intergenic	35.0%
	TTGCTTTGACAAATGAGTTG+GGG	-	chr6_2:66781795-66781814	Msa0924540:intron	35.0%
	TCAAAAGATGCAATCTTTCC+AGG	-	chr6_2:66781844-66781863	Msa0924540:intron	35.0%
!	GAGATTTAAAGTGTCTATGC+TGG	-	chr6_2:66781951-66781970	Msa0924540:intron	35.0%
!	ATGGAAATGCTGTTCCTTTT+AGG	-	chr6_2:66782200-66782219	Msa0924540:intron	35.0%
	ATAAGTACTCTGCATTACAG+GGG	+	chr6_2:66782234-66782253	None:intergenic	35.0%
	GATAAGTACTCTGCATTACA+GGG	+	chr6_2:66782235-66782254	None:intergenic	35.0%
	TGATAAGTACTCTGCATTAC+AGG	+	chr6_2:66782236-66782255	None:intergenic	35.0%
	TTTATCCTCACAATCTCAGA+TGG	-	chr6_2:66782265-66782284	Msa0924540:intron	35.0%
	TGTAATTCATTACCATGGCA+CGG	-	chr6_2:66782517-66782536	Msa0924540:intron	35.0%
	GAAAGACAAAACCAGTTTGT+TGG	-	chr6_2:66782602-66782621	Msa0924540:intron	35.0%
!!	AAGACAAAACCAGTTTGTTG+GGG	-	chr6_2:66782604-66782623	Msa0924540:intron	35.0%
	GGATGAACTTGAGCATAAAA+AGG	-	chr6_2:66782805-66782824	Msa0924540:intron	35.0%
!	TCCAAATTTGGTGGAACAAT+TGG	-	chr6_2:66782877-66782896	Msa0924540:intron	35.0%
	TCCAATTGTTCCACCAAATT+TGG	+	chr6_2:66782881-66782900	None:intergenic	35.0%
!	AAATTTGGTGGAACAATTGG+AGG	-	chr6_2:66782880-66782899	Msa0924540:intron	35.0%
	GCAAGATTAAGAAAGGAACT+TGG	-	chr6_2:66782941-66782960	Msa0924540:intron	35.0%
!	GTTTTTGCACCTCAATTTCA+AGG	+	chr6_2:66783117-66783136	None:intergenic	35.0%
	AATTGAGGTGCAAAAACTGA+AGG	-	chr6_2:66783120-66783139	Msa0924540:intron	35.0%
	ACACAACAAATGGTTATGCA+AGG	-	chr6_2:66783334-66783353	Msa0924540:intron	35.0%
	AGGCGAAATCAGTTCTTTAA+AGG	-	chr6_2:66783354-66783373	Msa0924540:intron	35.0%
!	TGATTTGGAAGCTGTGAATA+AGG	-	chr6_2:66783399-66783418	Msa0924540:intron	35.0%
!!	CTGTGAATAAGGATTTTGAC+AGG	-	chr6_2:66783410-66783429	Msa0924540:intron	35.0%
	TGCCACGATTGATAAACTTA+AGG	-	chr6_2:66783480-66783499	Msa0924540:intron	35.0%
	AGCCTTAAGTTTATCAATCG+TGG	+	chr6_2:66783485-66783504	None:intergenic	35.0%
	AGAATATTGTGATCTCCGAT+CGG	-	chr6_2:66783665-66783684	Msa0924540:intron	35.0%
!	GTAACTTTAGGAGGCTATAA+CGG	+	chr6_2:66783797-66783816	None:intergenic	35.0%
	CAACTGAATGTAACTTTAGG+AGG	+	chr6_2:66783806-66783825	None:intergenic	35.0%
	CTAAACAAAACATCCTGCAT+GGG	-	chr6_2:66783904-66783923	Msa0924540:intron	35.0%
!	TCTCAAAAGCATGATGCATA+AGG	-	chr6_2:66784020-66784039	Msa0924540:five_prime_UTR	35.0%
	ATACCAATTTCAACAGCTTC+TGG	+	chr6_2:66784069-66784088	None:intergenic	35.0%
	TAAACTAGCAATGTGTGTCT+TGG	-	chr6_2:66784100-66784119	Msa0924540:five_prime_UTR	35.0%
	AAACTAGCAATGTGTGTCTT+GGG	-	chr6_2:66784101-66784120	Msa0924540:five_prime_UTR	35.0%
	TGGGTATGTTTGATTGGTAT+AGG	-	chr6_2:66784120-66784139	Msa0924540:five_prime_UTR	35.0%
	GGGTATGTTTGATTGGTATA+GGG	-	chr6_2:66784121-66784140	Msa0924540:five_prime_UTR	35.0%
	GGTATGTTTGATTGGTATAG+GGG	-	chr6_2:66784122-66784141	Msa0924540:five_prime_UTR	35.0%
!!	CCGACTTGATTTTGAAAAGG+AGG	-	chr6_2:66779053-66779072	Msa0924540:three_prime_UTR	40.0%
	AGAAGAGAAGGAAGTGATGT+GGG	+	chr6_2:66779166-66779185	None:intergenic	40.0%
	TTAGTCTCTGTTGAGAAGCT+GGG	-	chr6_2:66779750-66779769	Msa0924540:CDS	40.0%
!!	CTTGAGTGAGTTGATTATGG+CGG	-	chr6_2:66779869-66779888	Msa0924540:CDS	40.0%
!	TTATGGCGGAAAGTGAGTTT+AGG	-	chr6_2:66779883-66779902	Msa0924540:CDS	40.0%
	GCTTCAAGGAGAATCAATTC+TGG	-	chr6_2:66779995-66780014	Msa0924540:CDS	40.0%
	TCAAGGAGAATCAATTCTGG+AGG	-	chr6_2:66779998-66780017	Msa0924540:CDS	40.0%
!	ACAGGCCTCTAGTTTATGTT+TGG	+	chr6_2:66780362-66780381	None:intergenic	40.0%
	ACATAAACTAGAGGCCTGTT+TGG	-	chr6_2:66780363-66780382	Msa0924540:CDS	40.0%
!!	ATGTTAGTCTTTGCTGAGAC+TGG	-	chr6_2:66781358-66781377	Msa0924540:intron	40.0%
!!	TGTTAGTCTTTGCTGAGACT+GGG	-	chr6_2:66781359-66781378	Msa0924540:intron	40.0%
	TAAGTGTCTGCAACTGACAT+AGG	+	chr6_2:66781727-66781746	None:intergenic	40.0%
	TTGCAGACACTTACTCTCAT+AGG	-	chr6_2:66781734-66781753	Msa0924540:intron	40.0%
	TGCAGACACTTACTCTCATA+GGG	-	chr6_2:66781735-66781754	Msa0924540:intron	40.0%
	TAAGTACTCTGCATTACAGG+GGG	+	chr6_2:66782233-66782252	None:intergenic	40.0%
	TTATACTCCATACCAGAAGC+AGG	-	chr6_2:66782346-66782365	Msa0924540:intron	40.0%
	TATACTCCATACCAGAAGCA+GGG	-	chr6_2:66782347-66782366	Msa0924540:intron	40.0%
	AGGAGAGAAGTCCAAATTGA+CGG	+	chr6_2:66782396-66782415	None:intergenic	40.0%
	AGAGTCAGTTTCAGAATCAG+AGG	+	chr6_2:66782486-66782505	None:intergenic	40.0%
	TTCTTTCAGCTTACCTTGAG+TGG	+	chr6_2:66782567-66782586	None:intergenic	40.0%
	TTTGTCTTTCGGTATCAGCA+AGG	+	chr6_2:66782592-66782611	None:intergenic	40.0%
	ACTTGAGCATAAAAAGGGAC+AGG	-	chr6_2:66782811-66782830	Msa0924540:intron	40.0%
	GCAAAAGCAAAAAGCTGAGT+TGG	-	chr6_2:66782844-66782863	Msa0924540:intron	40.0%
	GGAGACTCATGTTCCAAATT+TGG	-	chr6_2:66782865-66782884	Msa0924540:intron	40.0%
	GACTCATGTTCCAAATTTGG+TGG	-	chr6_2:66782868-66782887	Msa0924540:intron	40.0%
	TTAGAATGGCAGCTTGATTC+AGG	-	chr6_2:66783031-66783050	Msa0924540:intron	40.0%
	AGTTGGAAGACAGGATTACA+TGG	-	chr6_2:66783071-66783090	Msa0924540:intron	40.0%
	AACACAATTGACCTCAACAC+TGG	-	chr6_2:66783225-66783244	Msa0924540:intron	40.0%
	GCGATGTGAAGCTGAAAATT+TGG	-	chr6_2:66783291-66783310	Msa0924540:intron	40.0%
	GCTGTATGCTACACAACAAA+TGG	-	chr6_2:66783324-66783343	Msa0924540:intron	40.0%
	GAATATTGTGATCTCCGATC+GGG	-	chr6_2:66783666-66783685	Msa0924540:intron	40.0%
	TCACTTGATCACTACAAGAG+TGG	-	chr6_2:66783727-66783746	Msa0924540:intron	40.0%
!	TTCAAGCTTTTACTGGCCAT+AGG	-	chr6_2:66783764-66783783	Msa0924540:intron	40.0%
	CTATAACGGTATGACTCCTA+TGG	+	chr6_2:66783783-66783802	None:intergenic	40.0%
	GCTAAACAAAACATCCTGCA+TGG	-	chr6_2:66783903-66783922	Msa0924540:intron	40.0%
	AAATAGTACACAACCCATGC+AGG	+	chr6_2:66783920-66783939	None:intergenic	40.0%
	GTGTCTTGGGTATGTTTGAT+TGG	-	chr6_2:66784114-66784133	Msa0924540:five_prime_UTR	40.0%
!	GGACTGTTTTCTGTGTATGA+TGG	-	chr6_2:66784193-66784212	Msa0924540:five_prime_UTR	40.0%
	GGCCACTAGCATGTGAAAAT+AGG	-	chr6_2:66779074-66779093	Msa0924540:three_prime_UTR	45.0%
	GAAGAGAAGGAAGTGATGTG+GGG	+	chr6_2:66779165-66779184	None:intergenic	45.0%
	GAGAAGAGAAGGAAGTGATG+TGG	+	chr6_2:66779167-66779186	None:intergenic	45.0%
	CTCTTCTCTCTCTACGATTC+AGG	-	chr6_2:66779319-66779338	Msa0924540:three_prime_UTR	45.0%
	CTGATCCATCACACATTTCC+AGG	+	chr6_2:66779539-66779558	None:intergenic	45.0%
!	GTTAGTCTCTGTTGAGAAGC+TGG	-	chr6_2:66779749-66779768	Msa0924540:CDS	45.0%
	TAGTCTCTGTTGAGAAGCTG+GGG	-	chr6_2:66779751-66779770	Msa0924540:CDS	45.0%
	GCTTATCGTGATAAGCCCTT+AGG	+	chr6_2:66780581-66780600	None:intergenic	45.0%
!!	TGATGATGCTTTAGGGACTG+AGG	-	chr6_2:66781445-66781464	Msa0924540:intron	45.0%
!!	GCTTTAGGGACTGAGGTTAA+AGG	-	chr6_2:66781452-66781471	Msa0924540:intron	45.0%
	ATTCAGTAAGACGGTGACAG+TGG	+	chr6_2:66782094-66782113	None:intergenic	45.0%
	ACTGTCACCGTCTTACTGAA+TGG	-	chr6_2:66782093-66782112	Msa0924540:intron	45.0%
	CAGGGGGGAAAAATCCTAAA+AGG	+	chr6_2:66782217-66782236	None:intergenic	45.0%
	AAGTACTCTGCATTACAGGG+GGG	+	chr6_2:66782232-66782251	None:intergenic	45.0%
	ATCCTCACAATCTCAGATGG+AGG	-	chr6_2:66782268-66782287	Msa0924540:intron	45.0%
	TCCTCACAATCTCAGATGGA+GGG	-	chr6_2:66782269-66782288	Msa0924540:intron	45.0%
!!	AAGTCCAAATTGACGGGTTG+AGG	+	chr6_2:66782389-66782408	None:intergenic	45.0%
	GGAGAGAAGTCCAAATTGAC+GGG	+	chr6_2:66782395-66782414	None:intergenic	45.0%
!!	AGAACCCTCCTTTTGAGAAG+CGG	+	chr6_2:66782441-66782460	None:intergenic	45.0%
	GTCAGTTTCAGAATCAGAGG+AGG	+	chr6_2:66782483-66782502	None:intergenic	45.0%
	AATTCATTACCATGGCACGG+CGG	-	chr6_2:66782520-66782539	Msa0924540:intron	45.0%
!!	ACAAAACCAGTTTGTTGGGG+AGG	-	chr6_2:66782607-66782626	Msa0924540:intron	45.0%
!!	CAAAACCAGTTTGTTGGGGA+GGG	-	chr6_2:66782608-66782627	Msa0924540:intron	45.0%
	TTTGGTGGAACAATTGGAGG+TGG	-	chr6_2:66782883-66782902	Msa0924540:intron	45.0%
	ATTGCAAGACCAGCTTGAAG+TGG	-	chr6_2:66782988-66783007	Msa0924540:intron	45.0%
	GGATCAAATGCATGATGTGC+AGG	-	chr6_2:66783141-66783160	Msa0924540:intron	45.0%
	ACAATTGACCTCAACACTGG+AGG	-	chr6_2:66783228-66783247	Msa0924540:intron	45.0%
	CAAGTGAGAAACACAGTTGC+CGG	+	chr6_2:66783714-66783733	None:intergenic	45.0%
	GGACCAGAAGCTGTTGAAAT+TGG	-	chr6_2:66784063-66784082	Msa0924540:five_prime_UTR	45.0%
	CGCAGAGCCATTCAGTAAGA+CGG	+	chr6_2:66782103-66782122	None:intergenic	50.0%
!!!	ATGGAGGGCACTGGTGATTT+TGG	-	chr6_2:66782284-66782303	Msa0924540:intron	50.0%
	TGCAATCCCTGCTTCTGGTA+TGG	+	chr6_2:66782356-66782375	None:intergenic	50.0%
	ACTTCTGCAATCCCTGCTTC+TGG	+	chr6_2:66782361-66782380	None:intergenic	50.0%
	AAGCAGGGATTGCAGAAGTC+TGG	-	chr6_2:66782362-66782381	Msa0924540:intron	50.0%
	TGGTCCTCAACCCGTCAATT+TGG	-	chr6_2:66782382-66782401	Msa0924540:intron	50.0%
	TTGGACTTCTCTCCTAGCTC+AGG	-	chr6_2:66782401-66782420	Msa0924540:intron	50.0%
!	TAGCTCTGCCGCTTCTCAAA+AGG	-	chr6_2:66782430-66782449	Msa0924540:intron	50.0%
!	TCTGCCGCTTCTCAAAAGGA+GGG	-	chr6_2:66782434-66782453	Msa0924540:intron	50.0%
	GCGGTGAATACTGACGATGA+AGG	-	chr6_2:66782539-66782558	Msa0924540:intron	50.0%
	GACGATGAAGGAACCACTCA+AGG	-	chr6_2:66782551-66782570	Msa0924540:intron	50.0%
	GCATAAAAAGGGACAGGTGC+TGG	-	chr6_2:66782817-66782836	Msa0924540:intron	50.0%
!!	TTTCCTGTGCCACTTCAAGC+TGG	+	chr6_2:66783000-66783019	None:intergenic	50.0%
	TGACCTCAACACTGGAGGAA+TGG	-	chr6_2:66783233-66783252	Msa0924540:intron	50.0%
	GACCTCAACACTGGAGGAAT+GGG	-	chr6_2:66783234-66783253	Msa0924540:intron	50.0%
	CCTCTTCTCTTCATCCCGAT+CGG	+	chr6_2:66783683-66783702	None:intergenic	50.0%
	CGATCGGGATGAAGAGAAGA+GGG	-	chr6_2:66783681-66783700	Msa0924540:intron	50.0%
	AAGAGAAGAGGGAGGCAATC+CGG	-	chr6_2:66783692-66783711	Msa0924540:intron	50.0%
!	GCCCTCCATCTGAGATTGTG+AGG	+	chr6_2:66782273-66782292	None:intergenic	55.0%
!	CAATCTCAGATGGAGGGCAC+TGG	-	chr6_2:66782275-66782294	Msa0924540:intron	55.0%
!!!	GGCACTGGTGATTTTGGCGA+AGG	-	chr6_2:66782290-66782309	Msa0924540:intron	55.0%
	GACTTCTCTCCTAGCTCAGG+TGG	-	chr6_2:66782404-66782423	Msa0924540:intron	55.0%
	GAGCTAACACCACCTGAGCT+AGG	+	chr6_2:66782416-66782435	None:intergenic	55.0%
!	CTCTGCCGCTTCTCAAAAGG+AGG	-	chr6_2:66782433-66782452	Msa0924540:intron	55.0%
!!	AACCAGTTTGTTGGGGAGGG+AGG	-	chr6_2:66782611-66782630	Msa0924540:intron	55.0%
	TTCCTCCCTCCCCAACAAAC+TGG	+	chr6_2:66782616-66782635	None:intergenic	55.0%
	AGACCAGCTTGAAGTGGCAC+AGG	-	chr6_2:66782994-66783013	Msa0924540:intron	55.0%
	CTCCCATTCCTCCAGTGTTG+AGG	+	chr6_2:66783239-66783258	None:intergenic	55.0%
	CGCGAAGCTGGATAAGCTCT+CGG	+	chr6_2:66783546-66783565	None:intergenic	55.0%
	CCGATCGGGATGAAGAGAAG+AGG	-	chr6_2:66783680-66783699	Msa0924540:intron	55.0%
	TCGGGATGAAGAGAAGAGGG+AGG	-	chr6_2:66783684-66783703	Msa0924540:intron	55.0%
	CAGTATTCACCGCCGTGCCA+TGG	+	chr6_2:66782532-66782551	None:intergenic	60.0%
	CACTCTCTTGTGCGCGAAGC+TGG	+	chr6_2:66783558-66783577	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	66779052	66784254	66779052	ID=Msa0924540;Name=Msa0924540
chr6_2	mRNA	66779052	66784254	66779052	ID=Msa0924540-mRNA-1;Parent=Msa0924540;Name=Msa0924540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=289\|1\|1\|1\|0\|0.5\|2\|444\|508
chr6_2	exon	66779052	66781022	66779052	ID=Msa0924540-mRNA-1:exon:10564;Parent=Msa0924540-mRNA-1
chr6_2	exon	66783966	66784254	66783966	ID=Msa0924540-mRNA-1:exon:10563;Parent=Msa0924540-mRNA-1
chr6_2	five_prime_UTR	66783966	66784254	66783966	ID=Msa0924540-mRNA-1:five_prime_utr;Parent=Msa0924540-mRNA-1
chr6_2	CDS	66779496	66781022	66779496	ID=Msa0924540-mRNA-1:cds;Parent=Msa0924540-mRNA-1
chr6_2	three_prime_UTR	66779052	66779495	66779052	ID=Msa0924540-mRNA-1:three_prime_utr;Parent=Msa0924540-mRNA-1

Gene Sequence

>Msa0924540

ATGGAGGGCACTGGTGATTTTGGCGAAGGTCTTGACAAAGAAAGTTCATTGGTGACTCCATATTATACTCCATACCAGAAGCAGGGATTGCAGAAGTCTGGTCCTCAACCCGTCAATTTGGACTTCTCTCCTAGCTCAGGTGGTGTTAGCTCTGCCGCTTCTCAAAAGGAGGGTTCTGAATCAAGTTCTTCATCATCCTCCTCTGATTCTGAAACTGACTCTTGTATCAAGTCTGTAATTCATTACCATGGCACGGCGGTGAATACTGACGATGAAGGAACCACTCAAGGTAAGCTGAAAGAAGACCTTGCTGATACCGAAAGACAAAACCAGTTTGTTGGGGAGGGAGGAAATAATAGTTATGATGAATTGCTGAAGAAGTTCATTAAAATTGAGGAAGAGCTACGAGTTTCCAATTTGAAACTTAAGCTTTCAGAAGAAGAGATTATCAAGTTGAAGAATCAAAATGAGAAAAGTGAGGGTCAGCTTGATAGTGTGCAGAAAGAATTAGCACTGAATAAGGATGAACTTGAGCATAAAAAGGGACAGGTGCTGGAATTGCAAAAGCAAAAAGCTGAGTTGGAGACTCATGTTCCAAATTTGGTGGAACAATTGGAGGTGGCTAATGAACACCTCAAGATATCAAATGATGAAGTTGCAAGATTAAGAAAGGAACTTGGGAGTAGTTCAGCTGAGACTCGTCAATTGCAAGACCAGCTTGAAGTGGCACAGGAAAATGTGACTAAATTAGAATGGCAGCTTGATTCAGGCAGAAAGCAAATTTACAAGTTGGAAGACAGGATTACATGGTTTAAAACTAATGAAACTAACCTTGAAATTGAGGTGCAAAAACTGAAGGATCAAATGCATGATGTGCAGGCACAGTTCTCTTTTGAGAAAGATCAATTGCATTCTGATATTGCGAGCTTATCAGAAGTAAAAACACAATTGACCTCAACACTGGAGGAATGGGAGTCTAGAAGCCATTTATTAGCAAACAAGTTAAGGCGATGTGAAGCTGAAAATTTGGAGCACGAAGAGCTGTATGCTACACAACAAATGGTTATGCAAGGCGAAATCAGTTCTTTAAAGGAAGAACTTCATCAGAGAAGTAATGATTTGGAAGCTGTGAATAAGGATTTTGACAGGCATAAACAGAAATTTGACATGCTCATGACTGAAAAAGATGAAGTTAATGCCACGATTGATAAACTTAAGGCTGAAATAAGCTTTCGAGACGATCAAATAGAAAATATGGACCGAGAGCTTATCCAGCTTCGCGCACAAGAGAGTGAGCTGATCTCAAGATCTGAAACTAGACTGAATTTAGTAAATGAGTTGAAACTGAAAGTAGAAGAACTTGAAAAAGAGGTGACTAGACAGAATATTGTGATCTCCGATCGGGATGAAGAGAAGAGGGAGGCAATCCGGCAACTGTGTTTCTCACTTGATCACTACAAGAGTGGATATAAAGAAATTCTTCAAGCTTTTACTGGCCATAGGAGTCATACCGTTATAGCCTCCTAA

Protein sequence

>Msa0924540

MEGTGDFGEGLDKESSLVTPYYTPYQKQGLQKSGPQPVNLDFSPSSGGVSSAASQKEGSESSSSSSSSDSETDSCIKSVIHYHGTAVNTDDEGTTQGKLKEDLADTERQNQFVGEGGNNSYDELLKKFIKIEEELRVSNLKLKLSEEEIIKLKNQNEKSEGQLDSVQKELALNKDELEHKKGQVLELQKQKAELETHVPNLVEQLEVANEHLKISNDEVARLRKELGSSSAETRQLQDQLEVAQENVTKLEWQLDSGRKQIYKLEDRITWFKTNETNLEIEVQKLKDQMHDVQAQFSFEKDQLHSDIASLSEVKTQLTSTLEEWESRSHLLANKLRRCEAENLEHEELYATQQMVMQGEISSLKEELHQRSNDLEAVNKDFDRHKQKFDMLMTEKDEVNATIDKLKAEISFRDDQIENMDRELIQLRAQESELISRSETRLNLVNELKLKVEELEKEVTRQNIVISDRDEEKREAIRQLCFSLDHYKSGYKEILQAFTGHRSHTVIAS*