AlfalfaGEDB | Msa0998810

M. sativa cultivar zhongmu-4 / Msa0998810

KEGG: K08237
GO: -
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998810	XP_013451402.1	91.685	457	38	0	1	457	16	472	0.0	862

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998810	sp\|Q9AR73\|HQGT_RAUSE	49.892	461	222	8	1	457	9	464	8.10e-158	458

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998810	A0A072U709	91.685	457	38	0	1	457	16	472	0.0	862

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010150	Msa0998810	0.805838	1.100084e-49	-8.615850e-47
Msa0013270	Msa0998810	0.803145	4.008591e-49	-8.615850e-47
Msa0063540	Msa0998810	0.808814	2.574030e-50	-8.615850e-47
Msa0074620	Msa0998810	0.806245	9.033685e-50	-8.615850e-47
Msa0081120	Msa0998810	-0.800542	1.372652e-48	-8.615850e-47
Msa0150910	Msa0998810	0.801953	7.060503e-49	-8.615850e-47
Msa0163340	Msa0998810	0.801817	7.527526e-49	-8.615850e-47
Msa0170990	Msa0998810	0.811911	5.524367e-51	-8.615850e-47
Msa0238110	Msa0998810	0.807142	5.838657e-50	-8.615850e-47
Msa0261400	Msa0998810	0.800253	1.571460e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998810	MtrunA17_Chr6g0459311	91.685	457	38	0	1	457	16	472	0.0	862
Msa0998810	MtrunA17_Chr6g0486251	89.716	457	47	0	1	457	9	465	0.0	847
Msa0998810	MtrunA17_Chr6g0486201	89.716	457	47	0	1	457	9	465	0.0	847
Msa0998810	MtrunA17_Chr8g0335161	74.510	459	111	4	1	455	9	465	0.0	701
Msa0998810	MtrunA17_Chr8g0335141	71.522	460	126	3	1	457	12	469	0.0	683
Msa0998810	MtrunA17_Chr8g0361371	58.495	465	182	5	1	457	10	471	0.0	553
Msa0998810	MtrunA17_Chr8g0334831	55.696	474	190	6	1	457	9	479	0.0	525
Msa0998810	MtrunA17_Chr7g0232391	49.351	462	225	7	1	457	9	466	4.21e-152	440
Msa0998810	MtrunA17_Chr8g0336741	47.505	461	234	7	1	457	16	472	2.11e-146	426
Msa0998810	MtrunA17_Chr7g0232411	47.403	462	234	7	1	457	9	466	7.44e-146	424

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998810	AT4G01070.1	46.552	464	235	10	1	457	11	468	9.76e-141	412
Msa0998810	AT1G01420.2	46.237	465	234	12	1	457	14	470	4.82e-139	408
Msa0998810	AT1G01420.1	46.237	465	234	12	1	457	11	467	5.10e-139	408
Msa0998810	AT1G01390.1	45.043	464	242	10	1	457	11	468	1.01e-123	369
Msa0998810	AT1G01390.2	45.043	464	242	10	1	457	28	485	1.22e-123	369
Msa0998810	AT5G26310.1	38.816	456	253	14	1	443	10	452	1.18e-98	304
Msa0998810	AT3G50740.1	36.864	472	268	12	1	453	10	470	2.48e-94	293
Msa0998810	AT5G66690.1	38.178	461	253	14	1	445	10	454	7.01e-93	290
Msa0998810	AT4G36770.1	37.093	461	249	14	1	440	7	447	4.78e-87	274
Msa0998810	AT2G18570.1	36.638	464	267	13	1	449	8	459	1.12e-84	268

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Find 97 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAAGGTATGATAAA+AGG	0.327187	6_4:-80145959	Msa0998800:intron
AAAATCAAAGAATTGAGTAT+TGG	0.531003	6_4:+80146875	Msa0998810:CDS
AAACCTCGTGTTTATCCGGT+TGG	0.532673	6_4:+80146266	Msa0998810:CDS
AAACGGGTCAGGAAGCTCTT+TGG	0.433591	6_4:-80146108	Msa0998800:five_prime_UTR
AAATGGCATAATCCAGGTGA+AGG	0.571783	6_4:-80145603	Msa0998800:intron
AACAATAGAGAAGGGATTAG+TGG	0.425909	6_4:+80146565	Msa0998810:CDS
AACAATGGCCATGCAATTAT+CGG	0.407133	6_4:-80146695	None:intergenic
AACTGGGATAATAAAACGAG+AGG	0.639083	6_4:+80146793	Msa0998810:CDS
AAGGTCTTCAATGTTGATTT+GGG	0.360402	6_4:-80145775	Msa0998800:CDS
ACAATGAAGTTCATGTTTGG+TGG	0.496235	6_4:-80145747	Msa0998800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGATACTCATTGTGATGT+TGG	-	chr6_4:80145662-80145681	Msa0998800:intron	30.0%
AGAACAATGAAGTTCATGTT+TGG	-	chr6_4:80145753-80145772	Msa0998800:CDS	30.0%
TTTACTTCTTCACGAAGAAA+TGG	-	chr6_4:80145855-80145874	Msa0998800:intron	30.0%
TATGAAACAATAAATGCTCC+TGG	+	chr6_4:80146065-80146084	Msa0998810:CDS	30.0%
TTGATCTTTCACAGATAAAC+GGG	-	chr6_4:80146127-80146146	Msa0998800:five_prime_UTR	30.0%
CTTGATCTTTCACAGATAAA+CGG	-	chr6_4:80146128-80146147	Msa0998800:five_prime_UTR	30.0%
CACATCAAGAATAGATTTGT+AGG	-	chr6_4:80146156-80146175	Msa0998800:five_prime_UTR	30.0%
CAAACATGTCAATGTGTTTA+AGG	+	chr6_4:80146321-80146340	Msa0998810:CDS	30.0%
CATGATTCTCTTTATAGCTT+TGG	-	chr6_4:80146825-80146844	None:intergenic	30.0%
CAAAGCTATAAAGAGAATCA+TGG	+	chr6_4:80146823-80146842	Msa0998810:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	80145597	80146970	80145597	ID=Msa0998810;Name=Msa0998810
chr6_4	mRNA	80145597	80146970	80145597	ID=Msa0998810-mRNA-1;Parent=Msa0998810;Name=Msa0998810-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|457
chr6_4	exon	80145597	80146970	80145597	ID=Msa0998810-mRNA-1:exon:15196;Parent=Msa0998810-mRNA-1
chr6_4	CDS	80145597	80146970	80145597	ID=Msa0998810-mRNA-1:cds;Parent=Msa0998810-mRNA-1

Gene Sequence

>Msa0998810

ATGGTTCCTTCACCTGGATTATGCCATTTGATTCCACAAGTTGAGTTTGCAAAACTATTAATCCAACATCACAATGAGTATCATATCACATTCCTCATTCCCACACTTGGTCCACTAACTTCTTCCATGCAATCCATCTTGAACACTCTTCCACCAAACATGAACTTCATTGTTCTTCCCCAAATCAACATTGAAGACCTTCCACATAATCTTGAACCTGCAACACAAATGAAACTCATAGTGAAACACTCTATTCCATTTCTTCGTGAAGAAGTAAAATCCCTCCTTTCAAAAACTCGCCTAGTTGCTTTAGTTTTCAGCATGTTTTCAACCGATGCACATGATGTTGCTAAACATTTCAACCTTTTATCATACCTTTTCTTTTCCTCAGGAGCTGTTTTATTCTCTTTATTTATCACTATTCCAAACCTTGATGAAGCTGCTTCAACTCAGTTCTTAGAATCAAGTTATGAAACAATAAATGCTCCTGGTTTTTCTATTCCTTTCCATGCCAAAGAGCTTCCTGACCCGTTTATCTGTGAAAGATCAAGTGATACCTACAAATCTATTCTTGATGTGTGTCAAAAATTATCATTGTTTGACGGTGTTATTATGAATACTTTCACTGATTTGGAACCGGAAGCCATAAGGGTTCTCCAAGATAGAGAGAAACCTCGTGTTTATCCGGTTGGACCGATCATTAGGAATGCGTCAAATAATGAAGCAAACATGTCAATGTGTTTAAGGTGGCTGGAAAATCAGCCAACAAATTCTGTTCTTTTTGTCTCCTTTGGAAGTGGTGGAACACTCTCTCAAGATCAACTCAATGAGTTAGCTTTTGGTCTAGAATTGAGTGGTCACAAATTCTTGTGGGTTGTGAGAGCTCCAAGCAAACATTCTAGTTCTGCTTATTTTAGTGGACAAAAGGATGATCCATTAGAGTATTTACCAAACGGTTTTGTCGAAAGAACAATAGAGAAGGGATTAGTGGTTACATCATGGGCACCACAAGTGGAGATTCTTGGTCATGGATCAATTGGTGGTTTTTTAAGTCATTGTGGTTGGAGTTCAACTTTGGAGAGTGTGGTTAACGGCGTGCCGATAATTGCATGGCCATTGTTTGCTGAGCAAAGGATGAATGCAAAATTACTCACTGATGTCCTCAAAGTTGCAGGAAGGCCAAAGGTTGAGGATGAAACTGGGATAATAAAACGAGAGGAAGTCGCCAAAGCTATAAAGAGAATCATGGAAGGAGACGAAAGCTTTGGAATTCGGAAGAAAATCAAAGAATTGAGTATTGGTGCTGAAACTGTACTAAGTGAGCATGGTTCTTCTAGGAAAGCACTCTCTACTCTAGCATTGAAGTGGCAATAA

Protein sequence

>Msa0998810

MVPSPGLCHLIPQVEFAKLLIQHHNEYHITFLIPTLGPLTSSMQSILNTLPPNMNFIVLPQINIEDLPHNLEPATQMKLIVKHSIPFLREEVKSLLSKTRLVALVFSMFSTDAHDVAKHFNLLSYLFFSSGAVLFSLFITIPNLDEAASTQFLESSYETINAPGFSIPFHAKELPDPFICERSSDTYKSILDVCQKLSLFDGVIMNTFTDLEPEAIRVLQDREKPRVYPVGPIIRNASNNEANMSMCLRWLENQPTNSVLFVSFGSGGTLSQDQLNELAFGLELSGHKFLWVVRAPSKHSSSAYFSGQKDDPLEYLPNGFVERTIEKGLVVTSWAPQVEILGHGSIGGFLSHCGWSSTLESVVNGVPIIAWPLFAEQRMNAKLLTDVLKVAGRPKVEDETGIIKREEVAKAIKRIMEGDESFGIRKKIKELSIGAETVLSEHGSSRKALSTLALKWQ*