AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0998810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998810 MtrunA17_Chr6g0459311 91.685 457 38 0 1 457 16 472 0.0 862
Msa0998810 MtrunA17_Chr6g0486251 89.716 457 47 0 1 457 9 465 0.0 847
Msa0998810 MtrunA17_Chr6g0486201 89.716 457 47 0 1 457 9 465 0.0 847
Msa0998810 MtrunA17_Chr8g0335161 74.510 459 111 4 1 455 9 465 0.0 701
Msa0998810 MtrunA17_Chr8g0335141 71.522 460 126 3 1 457 12 469 0.0 683
Msa0998810 MtrunA17_Chr8g0361371 58.495 465 182 5 1 457 10 471 0.0 553
Msa0998810 MtrunA17_Chr8g0334831 55.696 474 190 6 1 457 9 479 0.0 525
Msa0998810 MtrunA17_Chr7g0232391 49.351 462 225 7 1 457 9 466 4.21e-152 440
Msa0998810 MtrunA17_Chr8g0336741 47.505 461 234 7 1 457 16 472 2.11e-146 426
Msa0998810 MtrunA17_Chr7g0232411 47.403 462 234 7 1 457 9 466 7.44e-146 424
Msa0998810 MtrunA17_Chr7g0232311 49.455 459 225 6 1 456 9 463 1.45e-143 419
Msa0998810 MtrunA17_Chr7g0232341 47.495 459 231 8 1 453 9 463 2.42e-143 418
Msa0998810 MtrunA17_Chr7g0232401 49.007 453 218 8 5 449 13 460 2.48e-143 418
Msa0998810 MtrunA17_Chr1g0153451 46.739 460 238 6 1 457 9 464 7.51e-143 417
Msa0998810 MtrunA17_Chr8g0336731 47.289 461 235 6 1 457 35 491 1.04e-142 417
Msa0998810 MtrunA17_Chr7g0275511 46.970 462 235 8 1 456 18 475 1.37e-142 417
Msa0998810 MtrunA17_Chr8g0347281 46.638 461 234 9 1 457 21 473 1.11e-141 414
Msa0998810 MtrunA17_Chr7g0232331 46.841 459 234 8 1 453 9 463 6.41e-141 412
Msa0998810 MtrunA17_Chr8g0347271 45.870 460 239 8 1 457 22 474 9.71e-139 407
Msa0998810 MtrunA17_Chr8g0336651 48.913 460 227 6 1 456 9 464 3.41e-137 424
Msa0998810 MtrunA17_Chr8g0336651 48.817 465 226 9 1 457 784 1244 3.66e-135 419
Msa0998810 MtrunA17_Chr8g0336651 50.179 279 104 4 183 457 528 775 3.80e-74 253
Msa0998810 MtrunA17_Chr8g0336691 49.460 463 224 7 1 457 16 474 7.73e-134 418
Msa0998810 MtrunA17_Chr8g0336691 48.596 463 228 9 1 457 922 1380 2.76e-132 414
Msa0998810 MtrunA17_Chr8g0336691 44.252 461 223 7 1 457 483 913 4.72e-118 375
Msa0998810 MtrunA17_Chr6g0449931 45.474 464 242 8 1 457 9 468 1.92e-132 390
Msa0998810 MtrunA17_Chr8g0373301 45.752 459 236 8 5 457 16 467 2.03e-130 385
Msa0998810 MtrunA17_Chr8g0334861 44.181 464 242 10 1 456 9 463 6.56e-127 376
Msa0998810 MtrunA17_Chr8g0334851 44.350 469 242 11 1 457 9 470 1.68e-124 370
Msa0998810 MtrunA17_Chr8g0339451 43.897 467 245 8 1 455 1 462 2.28e-116 349
Msa0998810 MtrunA17_Chr7g0232351 47.989 373 187 6 1 369 9 378 5.58e-115 342
Msa0998810 MtrunA17_Chr8g0339631 45.175 456 234 9 5 450 13 462 8.45e-115 345
Msa0998810 MtrunA17_Chr8g0339461 42.424 462 249 8 1 450 9 465 1.22e-109 332
Msa0998810 MtrunA17_Chr8g0339441 43.146 445 200 7 14 449 22 422 1.64e-107 325
Msa0998810 MtrunA17_Chr8g0370941 39.588 485 251 17 1 453 11 485 7.61e-95 295
Msa0998810 MtrunA17_Chr8g0339601 48.607 323 154 6 136 449 4 323 3.14e-94 288
Msa0998810 MtrunA17_Chr3g0079731 37.107 477 274 11 1 456 9 480 3.25e-93 290
Msa0998810 MtrunA17_Chr5g0403641 36.518 471 248 11 1 453 62 499 2.63e-89 281
Msa0998810 MtrunA17_Chr6g0462531 36.152 473 272 10 1 457 7 465 1.57e-87 275
Msa0998810 MtrunA17_Chr1g0153461 61.321 212 80 2 247 457 3 213 4.64e-86 263
Msa0998810 MtrunA17_Chr6g0462521 34.755 469 270 10 1 457 7 451 2.88e-83 264
Msa0998810 MtrunA17_Chr6g0462571 33.615 473 281 10 1 457 7 462 6.81e-79 253
Msa0998810 MtrunA17_Chr6g0462551 32.780 482 276 13 1 457 7 465 9.93e-79 253
Msa0998810 MtrunA17_Chr6g0462541 32.914 477 281 10 1 457 7 464 3.51e-78 251
Msa0998810 MtrunA17_Chr5g0442581 33.745 486 265 18 2 452 9 472 3.55e-76 247
Msa0998810 MtrunA17_Chr5g0442541 34.461 473 270 16 1 452 8 461 1.17e-75 244
Msa0998810 MtrunA17_Chr5g0442491 35.368 475 272 15 1 452 8 470 1.36e-74 241
Msa0998810 MtrunA17_Chr5g0448521 33.617 470 280 15 1 452 8 463 1.27e-73 239
Msa0998810 MtrunA17_Chr5g0442561 33.193 476 279 14 1 452 8 468 1.08e-72 236
Msa0998810 MtrunA17_Chr5g0429711 32.334 467 276 13 2 452 15 457 4.74e-71 232
Msa0998810 MtrunA17_Chr2g0302991 33.049 469 277 12 2 452 9 458 7.29e-71 231
Msa0998810 MtrunA17_Chr5g0429681 33.113 453 265 16 2 435 48 481 4.94e-70 230
Msa0998810 MtrunA17_Chr5g0442601 32.845 478 282 14 1 452 407 871 1.08e-68 234
Msa0998810 MtrunA17_Chr5g0442601 34.783 299 159 9 101 391 62 332 1.02e-41 158
Msa0998810 MtrunA17_Chr2g0302961 31.435 474 281 13 2 452 9 461 1.41e-68 226
Msa0998810 MtrunA17_Chr5g0442521 32.649 487 268 16 2 452 9 471 9.08e-68 224
Msa0998810 MtrunA17_Chr5g0442511 31.064 470 274 13 1 452 52 489 1.03e-62 211
Msa0998810 MtrunA17_Chr8g0366391 31.967 488 266 16 3 452 14 473 5.12e-56 193
Msa0998810 MtrunA17_Chr4g0044511 30.213 470 282 13 9 452 51 500 2.39e-55 192
Msa0998810 MtrunA17_Chr2g0329111 30.330 455 256 16 9 430 17 443 3.17e-53 186
Msa0998810 MtrunA17_Chr6g0449991 34.897 341 190 10 1 332 9 326 1.83e-52 179
Msa0998810 MtrunA17_Chr4g0042891 30.041 486 282 17 1 457 10 466 2.27e-52 183
Msa0998810 MtrunA17_Chr5g0426431 31.161 491 265 22 2 452 16 473 6.39e-51 179
Msa0998810 MtrunA17_Chr5g0414331 27.883 477 272 13 1 450 16 447 8.27e-51 179
Msa0998810 MtrunA17_Chr3g0112771 31.624 468 269 16 1 452 15 447 1.39e-50 178
Msa0998810 MtrunA17_Chr8g0374971 30.769 481 277 18 4 452 20 476 1.63e-50 178
Msa0998810 MtrunA17_Chr8g0374901 31.340 485 275 22 1 452 15 474 2.68e-50 177
Msa0998810 MtrunA17_Chr7g0243871 38.869 283 147 8 182 449 194 465 4.06e-50 177
Msa0998810 MtrunA17_Chr4g0066151 35.593 295 152 10 184 452 193 475 5.45e-50 177
Msa0998810 MtrunA17_Chr6g0464921 29.769 477 261 18 3 449 16 448 7.59e-50 176
Msa0998810 MtrunA17_Chr4g0066221 29.569 487 282 19 2 452 15 476 7.81e-50 176
Msa0998810 MtrunA17_Chr5g0414321 28.750 480 262 16 1 449 14 444 1.61e-49 175
Msa0998810 MtrunA17_Chr7g0265141 30.707 495 261 17 1 445 12 474 2.90e-49 175
Msa0998810 MtrunA17_Chr4g0066281 38.095 273 138 9 202 452 199 462 3.26e-49 174
Msa0998810 MtrunA17_Chr7g0243781 39.098 266 138 7 202 452 215 471 3.42e-49 175
Msa0998810 MtrunA17_Chr6g0463861 28.184 479 286 19 4 452 19 469 3.65e-49 174
Msa0998810 MtrunA17_Chr7g0265051 29.098 488 271 14 9 450 20 478 6.12e-49 174
Msa0998810 MtrunA17_Chr5g0440421 29.569 487 282 17 1 446 13 479 8.21e-49 174
Msa0998810 MtrunA17_Chr4g0032331 30.172 464 285 15 1 453 11 446 8.27e-49 173
Msa0998810 MtrunA17_Chr4g0042931 30.228 483 283 14 1 457 10 464 1.25e-48 173
Msa0998810 MtrunA17_Chr6g0454341 29.532 491 277 19 1 452 13 473 1.27e-48 173
Msa0998810 MtrunA17_Chr2g0278711 29.243 489 281 17 1 453 14 473 1.90e-48 172
Msa0998810 MtrunA17_Chr7g0243631 30.488 492 271 18 3 452 20 482 2.73e-48 172
Msa0998810 MtrunA17_Chr6g0464881 28.690 481 264 16 1 449 14 447 2.86e-48 172
Msa0998810 MtrunA17_Chr4g0066261 29.167 480 288 16 4 452 19 477 3.68e-48 172
Msa0998810 MtrunA17_Chr7g0243681 30.228 483 279 16 3 452 18 475 5.73e-48 171
Msa0998810 MtrunA17_Chr6g0464841 30.398 477 261 18 1 449 14 447 7.97e-48 170
Msa0998810 MtrunA17_Chr4g0044521 29.087 471 291 13 3 452 14 462 1.00e-47 170
Msa0998810 MtrunA17_Chr3g0079711 46.032 189 93 3 274 456 3 188 1.18e-47 162
Msa0998810 MtrunA17_Chr1g0173121 28.964 473 284 13 1 452 17 458 4.50e-47 169
Msa0998810 MtrunA17_Chr6g0464871 30.818 477 259 17 1 449 26 459 5.26e-47 168
Msa0998810 MtrunA17_Chr7g0265101 29.461 482 279 18 9 450 20 480 5.28e-47 169
Msa0998810 MtrunA17_Chr3g0078841 29.193 483 275 17 1 445 13 466 5.85e-47 169
Msa0998810 MtrunA17_Chr3g0092641 29.218 486 281 20 2 452 16 473 6.46e-47 168
Msa0998810 MtrunA17_Chr7g0265151 36.803 269 135 7 202 445 214 472 8.49e-47 168
Msa0998810 MtrunA17_Chr4g0066201 28.838 482 281 16 1 452 21 470 1.33e-46 167
Msa0998810 MtrunA17_Chr4g0050341 28.770 504 272 17 2 455 23 489 1.47e-46 168
Msa0998810 MtrunA17_Chr4g0053501 29.897 388 246 12 72 447 82 455 1.63e-46 168
Msa0998810 MtrunA17_Chr4g0014061 34.307 274 146 6 202 452 206 468 2.88e-46 167
Msa0998810 MtrunA17_Chr1g0159551 28.059 474 280 16 3 452 19 455 4.41e-46 166
Msa0998810 MtrunA17_Chr7g0218811 29.362 470 272 18 1 452 18 445 6.42e-46 165
Msa0998810 MtrunA17_Chr6g0454301 29.532 491 277 20 1 452 266 726 7.02e-46 169
Msa0998810 MtrunA17_Chr6g0454301 33.755 237 128 6 225 449 3 222 1.15e-32 131
Msa0998810 MtrunA17_Chr5g0426401 34.539 304 155 13 149 432 9 288 9.93e-46 161
Msa0998810 MtrunA17_Chr4g0044501 31.701 388 223 12 87 452 104 471 1.11e-45 165
Msa0998810 MtrunA17_Chr7g0243771 29.436 479 289 15 3 452 13 471 1.44e-45 165
Msa0998810 MtrunA17_Chr6g0454191 30.000 490 265 21 1 445 13 469 1.46e-45 165
Msa0998810 MtrunA17_Chr7g0243801 29.019 479 291 15 3 452 14 472 1.59e-45 165
Msa0998810 MtrunA17_Chr7g0235051 28.870 478 260 14 3 449 18 446 1.79e-45 164
Msa0998810 MtrunA17_Chr8g0377921 28.834 489 275 16 1 452 7 459 2.10e-45 164
Msa0998810 MtrunA17_Chr6g0454201 34.783 322 169 13 141 445 172 469 3.88e-45 164
Msa0998810 MtrunA17_Chr8g0374941 29.448 489 281 21 1 452 952 1413 3.88e-45 169
Msa0998810 MtrunA17_Chr8g0374941 29.560 477 274 21 1 441 14 464 1.08e-43 164
Msa0998810 MtrunA17_Chr8g0374941 29.339 484 286 22 1 452 479 938 2.29e-40 154
Msa0998810 MtrunA17_Chr7g0218311 36.861 274 144 9 201 452 213 479 4.23e-45 164
Msa0998810 MtrunA17_Chr7g0218791 28.194 454 262 12 2 431 9 422 7.19e-45 162
Msa0998810 MtrunA17_Chr6g0482061 28.298 470 284 15 2 438 15 464 8.47e-45 163
Msa0998810 MtrunA17_Chr6g0464861 29.339 484 256 18 1 449 14 446 9.32e-45 162
Msa0998810 MtrunA17_Chr3g0112761 29.787 470 281 15 1 454 11 447 1.11e-44 162
Msa0998810 MtrunA17_Chr8g0367221 29.978 457 266 14 1 431 1291 1719 1.18e-44 167
Msa0998810 MtrunA17_Chr8g0367221 27.729 458 274 13 1 431 15 442 3.14e-38 148
Msa0998810 MtrunA17_Chr8g0367221 26.386 451 290 12 1 431 801 1229 2.25e-37 146
Msa0998810 MtrunA17_Chr8g0369341 33.978 362 214 12 102 452 117 464 1.46e-44 162
Msa0998810 MtrunA17_Chr5g0401851 28.429 503 271 18 2 452 14 479 1.63e-44 162
Msa0998810 MtrunA17_Chr5g0419761 33.611 360 202 14 117 452 135 481 2.23e-44 162
Msa0998810 MtrunA17_Chr4g0066131 35.766 274 149 9 201 452 202 470 2.48e-44 161
Msa0998810 MtrunA17_Chr8g0359821 28.024 496 278 19 1 452 13 473 3.51e-44 161
Msa0998810 MtrunA17_Chr7g0217881 33.670 297 166 9 169 452 179 457 3.70e-44 160
Msa0998810 MtrunA17_Chr4g0066171 28.866 485 276 19 1 452 24 472 7.39e-44 160
Msa0998810 MtrunA17_Chr7g0218841 28.541 466 275 15 1 449 9 433 8.02e-44 159
Msa0998810 MtrunA17_Chr8g0336331 29.719 498 264 22 2 452 14 472 8.67e-44 160
Msa0998810 MtrunA17_Chr7g0218831 28.017 464 277 14 2 449 10 432 9.56e-44 159
Msa0998810 MtrunA17_Chr7g0249981 28.145 469 264 17 9 449 36 459 1.24e-43 160
Msa0998810 MtrunA17_Chr7g0243931 28.571 490 287 14 2 452 21 486 1.44e-43 160
Msa0998810 MtrunA17_Chr5g0420801 32.778 360 216 10 102 453 114 455 1.72e-43 159
Msa0998810 MtrunA17_Chr8g0382021 31.579 399 197 12 88 452 128 484 2.67e-43 159
Msa0998810 MtrunA17_Chr8g0337381 59.690 129 49 2 329 457 1 126 3.61e-43 148
Msa0998810 MtrunA17_Chr7g0249961 37.344 241 114 8 225 449 33 252 4.55e-43 153
Msa0998810 MtrunA17_Chr7g0243951 27.992 493 285 16 2 452 15 479 7.52e-43 157
Msa0998810 MtrunA17_Chr8g0377941 28.298 470 291 12 1 449 10 454 1.28e-42 157
Msa0998810 MtrunA17_Chr2g0294921 35.401 274 147 8 202 452 360 626 2.64e-42 158
Msa0998810 MtrunA17_Chr4g0060511 36.594 276 138 7 202 452 220 483 3.79e-42 156
Msa0998810 MtrunA17_Chr2g0294931 35.165 273 147 8 203 452 212 477 6.53e-42 155
Msa0998810 MtrunA17_Chr7g0265041 29.545 484 280 17 9 452 22 484 8.00e-42 155
Msa0998810 MtrunA17_Chr2g0294941 31.522 368 201 16 114 451 28 374 8.11e-42 152
Msa0998810 MtrunA17_Chr5g0419771 28.184 479 286 17 4 445 44 501 1.18e-41 155
Msa0998810 MtrunA17_Chr6g0454261 27.699 491 282 20 1 449 13 472 1.21e-41 154
Msa0998810 MtrunA17_Chr4g0053321 34.351 262 151 8 195 445 217 468 1.23e-41 154
Msa0998810 MtrunA17_Chr1g0179901 26.458 480 294 18 4 445 24 482 1.28e-41 154
Msa0998810 MtrunA17_Chr8g0350881 35.897 273 148 9 202 452 209 476 1.39e-41 154
Msa0998810 MtrunA17_Chr7g0243761 28.918 453 263 12 3 422 18 444 1.56e-41 154
Msa0998810 MtrunA17_Chr7g0243861 28.485 495 281 16 2 452 18 483 1.86e-41 154
Msa0998810 MtrunA17_Chr7g0275681 28.721 477 284 15 9 452 23 476 2.03e-41 154
Msa0998810 MtrunA17_Chr6g0453951 29.058 499 257 24 1 445 60 515 2.19e-41 154
Msa0998810 MtrunA17_Chr7g0218821 28.298 470 282 18 1 449 8 443 3.85e-41 152
Msa0998810 MtrunA17_Chr5g0401721 29.539 369 229 11 96 449 111 463 4.40e-41 152
Msa0998810 MtrunA17_Chr8g0374931 34.717 265 147 7 202 445 211 470 4.95e-41 152
Msa0998810 MtrunA17_Chr1g0207981 29.006 362 227 9 100 449 122 465 6.73e-41 152
Msa0998810 MtrunA17_Chr5g0428081 28.125 480 297 15 2 452 15 475 7.86e-41 152
Msa0998810 MtrunA17_Chr6g0454321 27.273 473 279 16 1 436 13 457 9.09e-41 154
Msa0998810 MtrunA17_Chr3g0118671 27.743 483 282 17 1 445 9 462 1.72e-40 151
Msa0998810 MtrunA17_Chr6g0454401 27.912 498 279 19 1 452 13 476 2.17e-40 150
Msa0998810 MtrunA17_Chr4g0044481 36.364 242 129 6 161 391 169 396 4.31e-40 149
Msa0998810 MtrunA17_Chr3g0121991 30.159 378 221 13 101 451 179 540 4.63e-40 151
Msa0998810 MtrunA17_Chr8g0355221 27.907 473 298 13 8 452 25 482 4.66e-40 150
Msa0998810 MtrunA17_Chr6g0463851 29.683 347 211 13 131 453 142 479 6.23e-40 149
Msa0998810 MtrunA17_Chr7g0241781 28.414 454 243 17 1 432 12 405 9.26e-40 148
Msa0998810 MtrunA17_Chr4g0011051 33.209 268 144 7 202 445 220 476 1.37e-39 149
Msa0998810 MtrunA17_Chr5g0431361 25.887 479 282 15 2 452 16 449 1.67e-39 148
Msa0998810 MtrunA17_Chr6g0454211 31.667 360 196 14 116 449 424 759 1.79e-39 151
Msa0998810 MtrunA17_Chr6g0454211 27.160 243 116 9 141 369 41 236 5.27e-17 84.0
Msa0998810 MtrunA17_Chr6g0452771 29.231 455 253 15 23 436 33 459 1.99e-39 148
Msa0998810 MtrunA17_Chr5g0431441 27.443 481 278 16 2 452 22 461 2.14e-39 148
Msa0998810 MtrunA17_Chr6g0454291 29.328 491 266 19 1 445 10 465 2.81e-39 147
Msa0998810 MtrunA17_Chr1g0165701 28.750 480 282 16 8 452 25 479 3.07e-39 148
Msa0998810 MtrunA17_Chr6g0454181 27.778 486 280 17 1 445 13 468 3.38e-39 147
Msa0998810 MtrunA17_Chr3g0118771 26.496 468 271 16 1 427 24 459 3.96e-39 147
Msa0998810 MtrunA17_Chr8g0334841 51.064 141 65 3 168 305 6 145 3.97e-39 139
Msa0998810 MtrunA17_Chr3g0122001 27.178 482 280 17 9 450 17 467 4.66e-39 150
Msa0998810 MtrunA17_Chr3g0122001 28.852 357 225 9 116 452 601 948 1.53e-37 146
Msa0998810 MtrunA17_Chr5g0412131 28.008 482 286 18 1 452 15 465 4.71e-39 147
Msa0998810 MtrunA17_Chr8g0361411 29.730 481 263 21 3 452 13 449 4.74e-39 147
Msa0998810 MtrunA17_Chr2g0278721 28.982 452 281 12 1 431 520 952 5.17e-39 150
Msa0998810 MtrunA17_Chr2g0278721 27.902 448 282 13 1 431 18 441 6.45e-35 138
Msa0998810 MtrunA17_Chr6g0454271 32.069 290 166 8 169 445 4 275 5.97e-39 142
Msa0998810 MtrunA17_Chr1g0161351 29.925 401 224 15 76 450 122 491 6.42e-39 147
Msa0998810 MtrunA17_Chr5g0416741 27.105 487 295 14 2 452 17 479 7.40e-39 147
Msa0998810 MtrunA17_Chr6g0454331 27.200 500 281 19 1 452 10 474 8.38e-39 146
Msa0998810 MtrunA17_Chr6g0454151 32.765 293 166 7 172 452 200 473 1.40e-38 145
Msa0998810 MtrunA17_Chr6g0454141 30.607 379 212 16 99 452 123 475 1.61e-38 145
Msa0998810 MtrunA17_Chr5g0410941 27.731 476 302 16 2 452 27 485 1.98e-38 145
Msa0998810 MtrunA17_Chr1g0207951 30.189 371 218 11 97 452 760 1104 1.99e-38 149
Msa0998810 MtrunA17_Chr1g0207951 30.916 262 148 6 203 452 326 566 1.51e-35 140
Msa0998810 MtrunA17_Chr3g0118711 27.137 468 274 17 1 430 16 454 2.33e-38 145
Msa0998810 MtrunA17_Chr5g0423981 26.226 469 288 15 1 452 13 440 3.02e-38 144
Msa0998810 MtrunA17_Chr3g0118691 27.163 497 281 17 1 452 18 478 3.96e-38 144
Msa0998810 MtrunA17_Chr3g0118721 33.058 242 125 7 203 427 39 260 4.34e-38 140
Msa0998810 MtrunA17_Chr4g0072761 32.990 291 172 6 163 452 180 448 4.60e-38 144
Msa0998810 MtrunA17_Chr6g0454131 30.976 297 174 8 169 452 196 474 1.04e-37 143
Msa0998810 MtrunA17_Chr3g0098111 28.141 398 239 14 74 450 92 463 1.35e-37 143
Msa0998810 MtrunA17_Chr7g0243611 34.701 268 131 8 165 409 50 296 1.41e-37 139
Msa0998810 MtrunA17_Chr3g0118661 26.549 452 266 16 2 416 17 439 1.56e-37 143
Msa0998810 MtrunA17_Chr6g0453961 27.615 478 274 18 1 436 22 469 1.98e-37 142
Msa0998810 MtrunA17_Chr7g0243911 38.636 220 107 5 237 442 11 216 2.49e-37 136
Msa0998810 MtrunA17_Chr3g0118701 26.489 487 297 15 1 452 18 478 2.53e-37 142
Msa0998810 MtrunA17_Chr2g0278741 27.928 444 287 10 1 431 100 523 2.56e-37 143
Msa0998810 MtrunA17_Chr1g0207971 26.877 413 238 15 66 452 75 449 2.63e-37 142
Msa0998810 MtrunA17_Chr5g0393591 30.943 265 143 6 188 452 207 431 3.14e-37 141
Msa0998810 MtrunA17_Chr1g0207931 32.296 257 152 6 200 445 241 486 3.60e-37 142
Msa0998810 MtrunA17_Chr7g0249931 28.211 475 274 20 1 449 43 476 3.66e-37 142
Msa0998810 MtrunA17_Chr7g0243711 39.631 217 107 5 248 452 108 312 3.86e-37 138
Msa0998810 MtrunA17_Chr7g0243851 32.710 321 168 11 165 452 133 438 4.02e-37 141
Msa0998810 MtrunA17_Chr7g0265111 33.818 275 149 6 202 452 246 511 4.32e-37 142
Msa0998810 MtrunA17_Chr6g0454121 32.601 273 151 7 192 452 223 474 4.46e-37 141
Msa0998810 MtrunA17_Chr4g0069611 27.373 453 273 12 1 431 18 436 5.64e-37 141
Msa0998810 MtrunA17_Chr5g0442501 31.596 307 190 9 1 296 8 305 6.60e-37 137
Msa0998810 MtrunA17_Chr5g0412111 30.952 336 190 12 109 417 118 438 7.10e-37 140
Msa0998810 MtrunA17_Chr6g0454221 34.188 234 124 6 225 445 3 219 7.41e-37 137
Msa0998810 MtrunA17_Chr5g0412101 28.198 383 231 14 92 452 106 466 1.08e-36 140
Msa0998810 MtrunA17_Chr7g0250001 26.964 471 277 17 5 450 13 441 1.38e-36 140
Msa0998810 MtrunA17_Chr7g0243811 35.857 251 140 8 148 390 136 373 1.69e-36 138
Msa0998810 MtrunA17_Chr8g0380531 30.914 372 210 14 103 455 113 456 2.73e-36 139
Msa0998810 MtrunA17_Chr8g0365811 31.273 275 169 7 190 452 687 953 3.21e-36 142
Msa0998810 MtrunA17_Chr8g0365811 30.088 339 210 10 97 421 115 440 1.76e-35 140
Msa0998810 MtrunA17_Chr5g0409591 33.466 251 141 6 202 431 212 457 6.39e-36 138
Msa0998810 MtrunA17_Chr4g0072771 29.296 355 224 8 101 452 131 461 7.41e-36 138
Msa0998810 MtrunA17_Chr2g0307961 26.151 478 298 14 1 452 16 464 8.53e-36 138
Msa0998810 MtrunA17_Chr6g0454361 30.220 364 210 13 103 452 143 476 8.57e-36 138
Msa0998810 MtrunA17_Chr3g0106231 25.800 469 275 16 1 445 21 440 2.25e-35 137
Msa0998810 MtrunA17_Chr3g0106251 30.108 279 163 7 177 445 26 282 4.13e-35 132
Msa0998810 MtrunA17_Chr1g0207861 32.482 274 159 8 190 450 202 462 6.19e-35 135
Msa0998810 MtrunA17_Chr6g0454171 32.210 267 130 9 185 436 59 289 8.99e-35 132
Msa0998810 MtrunA17_Chr4g0029151 27.045 440 286 9 1 430 23 437 9.11e-35 135
Msa0998810 MtrunA17_Chr7g0241801 27.840 449 248 16 3 432 14 405 1.17e-34 134
Msa0998810 MtrunA17_Chr4g0029131 27.149 442 283 13 1 430 15 429 1.24e-34 137
Msa0998810 MtrunA17_Chr6g0466831 27.840 449 276 13 1 431 21 439 6.36e-34 132
Msa0998810 MtrunA17_Chr1g0207831 30.935 278 156 7 188 450 201 457 6.74e-34 132
Msa0998810 MtrunA17_Chr6g0463891 25.887 479 297 15 2 449 16 467 7.49e-34 132
Msa0998810 MtrunA17_Chr6g0454351 26.680 491 276 20 1 452 15 460 9.72e-34 132
Msa0998810 MtrunA17_Chr1g0196851 27.293 447 279 14 1 430 52 469 1.86e-33 132
Msa0998810 MtrunA17_Chr8g0336321 28.665 457 272 16 1 430 10 439 7.84e-33 129
Msa0998810 MtrunA17_Chr5g0431401 25.536 466 293 16 2 450 14 442 1.18e-32 129
Msa0998810 MtrunA17_Chr8g0355011 30.303 330 170 12 117 436 62 341 1.65e-32 127
Msa0998810 MtrunA17_Chr5g0431421 31.022 274 155 7 191 452 193 444 3.16e-32 127
Msa0998810 MtrunA17_Chr8g0336251 28.446 457 273 16 1 430 10 439 4.14e-32 127
Msa0998810 MtrunA17_Chr5g0416821 27.273 484 287 16 2 452 18 469 5.45e-32 127
Msa0998810 MtrunA17_Chr5g0431371 26.793 474 281 17 2 452 14 444 9.78e-32 126
Msa0998810 MtrunA17_Chr5g0432731 29.572 257 144 6 203 445 52 285 2.49e-31 122
Msa0998810 MtrunA17_Chr5g0427571 39.344 183 99 3 248 430 103 273 2.80e-31 122
Msa0998810 MtrunA17_Chr3g0118751 25.581 473 240 17 1 427 9 415 4.82e-31 124
Msa0998810 MtrunA17_Chr6g0466841 27.051 451 277 13 1 431 21 439 6.80e-31 124
Msa0998810 MtrunA17_Chr6g0464091 27.391 460 271 14 1 431 21 446 2.54e-30 122
Msa0998810 MtrunA17_Chr3g0079721 29.167 288 177 9 1 268 8 288 2.93e-30 119
Msa0998810 MtrunA17_Chr2g0302851 24.892 462 297 13 1 442 19 450 4.82e-30 121
Msa0998810 MtrunA17_Chr4g0039881 26.697 442 274 13 9 431 3 413 1.06e-29 120
Msa0998810 MtrunA17_Chr5g0448551 33.197 244 120 11 203 423 212 435 6.36e-29 118
Msa0998810 MtrunA17_Chr6g0454371 34.973 183 102 4 270 452 1 166 1.39e-28 110
Msa0998810 MtrunA17_Chr3g0092031 35.165 182 104 3 250 431 6 173 1.12e-27 109
Msa0998810 MtrunA17_Chr2g0283041 29.596 223 146 3 201 423 210 421 1.27e-27 114
Msa0998810 MtrunA17_Chr4g0066141 37.580 157 83 4 309 452 193 347 1.48e-27 112
Msa0998810 MtrunA17_Chr7g0231631 32.234 273 137 8 202 452 9 255 4.36e-27 109
Msa0998810 MtrunA17_Chr6g0454251 26.829 410 236 16 1 370 10 395 4.55e-27 112
Msa0998810 MtrunA17_Chr8g0357361 32.161 199 113 4 202 391 63 248 3.98e-26 107
Msa0998810 MtrunA17_Chr4g0040691 24.439 446 302 11 1 431 11 436 1.08e-25 109
Msa0998810 MtrunA17_Chr8g0336261 36.000 150 79 4 270 419 1 133 2.19e-25 100
Msa0998810 MtrunA17_Chr5g0431431 31.336 217 113 7 203 412 156 343 1.37e-24 104
Msa0998810 MtrunA17_Chr4g0040711 24.242 462 302 13 1 449 11 437 3.50e-24 104
Msa0998810 MtrunA17_Chr2g0319751 27.107 439 278 14 1 423 488 900 5.98e-23 102
Msa0998810 MtrunA17_Chr2g0319751 24.053 449 255 16 1 423 11 399 2.06e-16 82.0
Msa0998810 MtrunA17_Chr2g0319791 34.536 194 115 3 231 423 241 423 2.99e-22 99.0
Msa0998810 MtrunA17_Chr5g0442551 26.733 303 177 13 53 339 21 294 5.25e-22 95.9
Msa0998810 MtrunA17_Chr2g0319761 25.561 446 294 13 1 431 11 433 7.93e-22 97.8
Msa0998810 MtrunA17_Chr4g0029161 25.113 442 264 15 1 430 15 401 2.21e-21 96.3
Msa0998810 MtrunA17_Chr6g0454231 26.667 240 114 7 201 431 6 192 5.37e-21 95.5
Msa0998810 MtrunA17_Chr2g0321331 31.361 169 89 2 255 423 91 232 1.50e-19 88.2
Msa0998810 MtrunA17_Chr2g0319731 29.825 228 148 3 197 423 224 440 8.51e-19 88.6
Msa0998810 MtrunA17_Chr1g0207881 36.207 116 73 1 331 445 258 373 1.51e-18 87.4
Msa0998810 MtrunA17_Chr7g0243731 51.515 66 32 0 326 391 5 70 4.72e-18 78.6
Msa0998810 MtrunA17_Chr6g0469961 34.375 128 73 3 173 290 38 164 2.53e-17 79.3
Msa0998810 MtrunA17_Chr2g0319801 23.434 431 304 9 1 423 11 423 4.19e-17 83.6
Msa0998810 MtrunA17_Chr6g0449971 50.633 79 38 1 379 457 1 78 7.79e-17 75.5
Msa0998810 MtrunA17_Chr6g0454391 36.047 86 49 2 346 431 13 92 2.31e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998810 AT4G01070.1 46.552 464 235 10 1 457 11 468 9.76e-141 412
Msa0998810 AT1G01420.2 46.237 465 234 12 1 457 14 470 4.82e-139 408
Msa0998810 AT1G01420.1 46.237 465 234 12 1 457 11 467 5.10e-139 408
Msa0998810 AT1G01390.1 45.043 464 242 10 1 457 11 468 1.01e-123 369
Msa0998810 AT1G01390.2 45.043 464 242 10 1 457 28 485 1.22e-123 369
Msa0998810 AT5G26310.1 38.816 456 253 14 1 443 10 452 1.18e-98 304
Msa0998810 AT3G50740.1 36.864 472 268 12 1 453 10 470 2.48e-94 293
Msa0998810 AT5G66690.1 38.178 461 253 14 1 445 10 454 7.01e-93 290
Msa0998810 AT4G36770.1 37.093 461 249 14 1 440 7 447 4.78e-87 274
Msa0998810 AT2G18570.1 36.638 464 267 13 1 449 8 459 1.12e-84 268
Msa0998810 AT4G01070.2 42.857 343 182 10 1 336 11 346 5.14e-81 254
Msa0998810 AT3G16520.3 34.194 465 284 11 1 456 8 459 4.99e-79 253
Msa0998810 AT2G18560.1 39.623 371 206 9 88 449 8 369 2.83e-75 241
Msa0998810 AT1G07260.1 34.115 469 262 16 3 445 13 460 5.27e-75 243
Msa0998810 AT1G07250.1 32.285 477 271 15 2 448 10 464 6.56e-74 240
Msa0998810 AT3G21790.1 33.193 476 278 12 2 449 8 471 1.44e-73 240
Msa0998810 AT3G16520.2 33.556 450 277 11 1 441 8 444 1.56e-73 238
Msa0998810 AT3G16520.1 33.556 450 277 11 1 441 8 444 1.65e-73 238
Msa0998810 AT3G21800.1 33.544 474 275 13 2 449 9 468 1.39e-72 237
Msa0998810 AT3G21750.1 32.903 465 284 12 2 449 8 461 3.18e-71 233
Msa0998810 AT3G21780.1 33.617 470 274 11 2 449 8 461 3.69e-70 230
Msa0998810 AT1G07240.1 32.068 474 280 13 2 448 9 467 1.62e-68 226
Msa0998810 AT2G29730.1 31.197 468 281 14 2 449 9 455 2.68e-68 225
Msa0998810 AT2G29740.1 32.979 470 271 15 2 445 12 463 3.12e-68 225
Msa0998810 AT2G29750.1 33.333 474 265 19 1 445 11 462 5.14e-68 225
Msa0998810 AT4G15280.1 31.435 474 284 16 2 449 8 466 9.39e-68 224
Msa0998810 AT4G15280.2 31.435 474 284 16 2 449 40 498 1.79e-67 224
Msa0998810 AT2G29710.1 30.538 465 288 12 2 449 9 455 7.11e-65 216
Msa0998810 AT4G15260.1 33.239 355 218 7 108 450 1 348 8.11e-64 210
Msa0998810 AT3G21760.1 31.809 481 280 14 2 449 8 473 7.48e-63 211
Msa0998810 AT1G05675.1 31.933 476 260 17 1 450 9 446 1.23e-58 199
Msa0998810 AT1G05680.1 30.851 470 273 15 1 450 9 446 1.41e-58 199
Msa0998810 AT2G36780.1 30.480 479 279 16 9 452 25 484 2.50e-56 194
Msa0998810 AT2G36770.1 29.263 475 290 16 9 452 25 484 1.86e-55 192
Msa0998810 AT3G53160.1 30.435 483 290 12 1 452 11 478 3.77e-55 191
Msa0998810 AT2G36800.1 29.106 481 284 17 9 452 23 483 1.09e-54 190
Msa0998810 AT5G14860.1 29.175 473 286 12 9 452 19 471 2.66e-54 189
Msa0998810 AT2G15480.1 31.783 387 213 7 84 445 109 469 7.30e-54 187
Msa0998810 AT2G36750.1 29.474 475 288 15 9 452 21 479 2.30e-53 186
Msa0998810 AT4G34131.1 29.774 487 267 14 9 452 21 475 2.93e-53 186
Msa0998810 AT2G16890.2 32.211 475 260 18 9 452 20 463 1.66e-52 184
Msa0998810 AT2G15480.2 31.738 397 210 9 84 445 109 479 1.68e-52 184
Msa0998810 AT2G15490.1 31.204 407 230 11 66 445 86 469 2.45e-52 183
Msa0998810 AT2G15490.3 31.204 407 227 11 66 445 86 466 5.68e-52 182
Msa0998810 AT2G36760.1 30.720 472 273 17 9 445 25 477 1.62e-51 181
Msa0998810 AT4G34135.1 29.630 459 237 11 9 418 22 443 1.88e-51 181
Msa0998810 AT1G10400.1 31.368 475 261 20 9 452 18 458 2.23e-50 178
Msa0998810 AT4G34138.1 31.116 421 219 12 53 445 90 467 3.63e-50 178
Msa0998810 AT2G31790.1 31.300 377 198 11 103 450 106 450 1.76e-49 175
Msa0998810 AT1G22360.1 29.150 494 279 18 2 455 14 476 1.02e-48 174
Msa0998810 AT2G36790.1 29.228 479 285 15 9 452 24 483 1.75e-48 173
Msa0998810 AT2G43820.1 28.631 482 273 15 2 457 11 447 1.78e-47 169
Msa0998810 AT3G53150.1 33.957 374 192 12 117 452 149 505 6.47e-47 169
Msa0998810 AT2G31750.1 35.424 271 140 7 201 455 202 453 5.89e-46 166
Msa0998810 AT1G22340.1 29.697 495 276 22 2 455 17 480 7.81e-46 166
Msa0998810 AT1G22380.1 30.041 486 246 18 2 436 17 459 1.20e-45 166
Msa0998810 AT2G31750.2 35.424 271 140 7 201 455 202 453 1.43e-45 165
Msa0998810 AT2G16890.3 30.524 439 238 17 9 414 20 424 9.24e-45 162
Msa0998810 AT1G24100.1 29.228 479 270 13 1 450 14 452 1.36e-44 162
Msa0998810 AT5G03490.1 29.132 484 270 17 3 457 24 463 1.37e-44 162
Msa0998810 AT2G36970.1 31.180 356 216 12 99 445 124 459 3.43e-44 162
Msa0998810 AT1G78270.1 29.149 470 271 17 2 436 17 459 4.81e-44 161
Msa0998810 AT5G59590.1 27.729 458 294 12 1 449 13 442 6.56e-44 160
Msa0998810 AT3G55700.1 28.392 479 273 18 1 452 11 446 9.36e-44 160
Msa0998810 AT3G46670.1 30.043 466 273 16 1 449 12 441 9.54e-44 159
Msa0998810 AT1G22400.1 29.878 492 279 19 2 455 17 480 1.04e-43 160
Msa0998810 AT3G46690.1 28.326 466 288 14 1 452 12 445 3.59e-43 158
Msa0998810 AT5G12890.1 30.388 464 268 18 1 431 13 454 4.20e-43 159
Msa0998810 AT1G22360.2 28.745 494 269 20 2 455 14 464 5.89e-43 158
Msa0998810 AT5G59580.1 27.549 461 290 12 1 449 12 440 1.79e-42 156
Msa0998810 AT3G55710.1 28.390 472 286 15 1 452 11 450 2.36e-42 156
Msa0998810 AT2G43840.2 33.569 283 151 7 193 457 184 447 3.37e-42 155
Msa0998810 AT3G11340.1 31.143 350 207 10 113 452 115 440 5.46e-42 155
Msa0998810 AT3G46700.1 28.017 464 289 13 1 453 12 441 5.52e-42 155
Msa0998810 AT2G43840.1 33.566 286 147 7 193 457 184 447 5.89e-42 155
Msa0998810 AT3G46680.1 27.484 473 283 16 1 452 12 445 6.59e-42 154
Msa0998810 AT4G15550.1 31.635 373 223 12 89 445 106 462 1.29e-41 154
Msa0998810 AT2G30140.1 27.391 460 282 13 2 445 17 440 6.70e-41 152
Msa0998810 AT1G05560.1 27.907 473 281 15 1 449 8 444 8.05e-41 152
Msa0998810 AT1G51210.1 30.493 446 255 16 3 431 25 432 1.62e-40 150
Msa0998810 AT3G46660.1 28.633 461 288 14 1 449 17 448 1.88e-40 150
Msa0998810 AT2G30140.2 27.391 460 281 14 2 445 17 439 2.26e-40 150
Msa0998810 AT1G05560.2 27.907 473 281 15 1 449 58 494 2.44e-40 152
Msa0998810 AT2G23260.1 27.913 369 232 7 95 449 98 446 4.09e-40 150
Msa0998810 AT2G23250.1 29.773 309 190 6 153 452 141 431 9.52e-40 148
Msa0998810 AT1G73880.1 28.842 475 282 18 1 450 17 460 9.76e-40 149
Msa0998810 AT5G05880.1 29.708 377 232 10 88 452 89 444 1.56e-39 148
Msa0998810 AT3G46650.1 26.667 435 267 13 1 427 13 403 2.81e-39 147
Msa0998810 AT5G38040.1 27.352 457 281 16 9 449 21 442 1.23e-37 143
Msa0998810 AT3G02100.1 28.326 466 255 17 1 431 16 437 1.92e-37 142
Msa0998810 AT1G22370.2 28.958 480 273 21 2 445 17 464 4.82e-37 142
Msa0998810 AT5G05870.1 30.000 350 216 10 113 453 122 451 9.32e-37 140
Msa0998810 AT2G28080.1 31.176 340 206 12 116 447 142 461 1.33e-36 140
Msa0998810 AT2G26480.1 30.495 364 212 11 104 452 104 441 1.99e-36 139
Msa0998810 AT5G38010.1 27.637 474 284 17 1 452 13 449 5.02e-36 139
Msa0998810 AT1G05530.1 30.362 359 214 11 103 447 109 445 6.70e-36 138
Msa0998810 AT2G30150.1 26.840 462 283 14 2 445 1 425 7.27e-36 138
Msa0998810 AT2G30150.2 26.840 462 283 14 2 445 17 441 1.16e-35 137
Msa0998810 AT5G05860.1 33.594 256 151 4 202 453 204 444 1.25e-35 137
Msa0998810 AT3G21560.1 27.665 394 251 12 76 455 98 471 1.60e-35 138
Msa0998810 AT4G15480.1 31.868 273 158 6 188 447 212 469 4.84e-35 136
Msa0998810 AT3G46720.1 32.534 292 162 7 168 452 173 436 5.38e-35 135
Msa0998810 AT5G05890.1 32.258 279 169 6 179 452 185 448 6.68e-35 135
Msa0998810 AT1G22370.1 34.749 259 136 9 202 445 54 294 6.97e-35 132
Msa0998810 AT5G54010.1 26.667 435 276 11 1 423 9 412 3.14e-34 134
Msa0998810 AT5G49690.1 27.494 451 270 14 1 429 13 428 7.49e-34 132
Msa0998810 AT5G17050.1 28.385 384 242 10 72 445 86 446 1.03e-33 132
Msa0998810 AT5G65550.1 25.688 436 285 11 3 421 14 427 1.11e-33 132
Msa0998810 AT4G15490.1 30.279 251 142 4 204 445 229 455 3.47e-33 131
Msa0998810 AT1G06000.1 34.231 260 155 6 202 452 177 429 3.53e-33 130
Msa0998810 AT4G15500.1 25.647 464 306 12 1 447 12 453 5.84e-32 127
Msa0998810 AT4G14090.1 30.677 251 147 8 203 445 213 444 6.85e-32 127
Msa0998810 AT1G30530.1 26.579 380 249 10 73 445 83 439 2.45e-31 125
Msa0998810 AT5G05900.1 27.424 361 231 8 98 452 108 443 5.48e-31 124
Msa0998810 AT4G27570.1 25.167 449 272 12 1 426 10 417 8.57e-31 124
Msa0998810 AT1G64910.1 25.843 445 286 11 1 433 9 421 2.52e-30 122
Msa0998810 AT5G17040.1 25.968 439 270 14 29 445 23 428 4.29e-30 122
Msa0998810 AT5G17030.1 30.924 249 146 5 202 445 217 444 8.79e-30 121
Msa0998810 AT4G27560.1 25.951 447 263 14 1 423 10 412 4.49e-29 119
Msa0998810 AT3G29630.1 25.499 451 291 13 1 440 9 425 6.00e-29 119
Msa0998810 AT2G22590.1 26.258 457 284 18 1 432 18 446 8.22e-29 118
Msa0998810 AT5G17040.2 31.474 251 140 7 203 445 100 326 1.17e-28 115
Msa0998810 AT3G22250.1 33.476 233 116 10 223 440 240 448 1.37e-28 117
Msa0998810 AT5G53990.1 25.277 451 281 14 1 433 9 421 4.06e-28 116
Msa0998810 AT3G29630.2 25.727 447 269 12 1 440 9 399 5.17e-28 115
Msa0998810 AT1G50580.1 25.000 452 290 14 1 440 9 423 2.87e-27 114
Msa0998810 AT2G22930.1 23.707 464 285 14 1 443 9 424 1.80e-26 111
Msa0998810 AT5G37950.2 29.107 347 199 15 44 370 19 338 2.54e-26 109
Msa0998810 AT5G37950.1 29.191 346 206 14 44 370 19 344 9.35e-26 108
Msa0998810 AT1G64920.1 23.789 454 282 15 1 430 9 422 2.92e-24 105
Msa0998810 AT5G54060.1 31.298 262 151 8 198 445 205 451 3.75e-24 105
Msa0998810 AT4G09500.2 23.982 442 273 11 1 423 9 406 4.51e-24 104
Msa0998810 AT4G09500.1 34.831 178 102 3 249 423 215 381 1.45e-22 99.8
Msa0998810 AT4G34135.2 25.152 330 178 8 9 294 22 326 1.11e-17 84.3
Msa0998810 AT2G16890.4 26.623 308 176 15 9 285 20 308 8.53e-11 63.5
Msa0998810 AT2G16890.1 26.623 308 176 15 9 285 20 308 8.53e-11 63.5

Find 97 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACATGTCAATGTGTTTA+AGG 0.216637 6_4:+80146321 Msa0998810:CDS
TATGAATACTTTCACTGATT+TGG 0.217613 6_4:+80146208 Msa0998810:CDS
ATGAGTTTCATTTGTGTTGC+AGG 0.264646 6_4:-80145813 Msa0998800:intron
CAACTCAATGAGTTAGCTTT+TGG 0.270638 6_4:+80146416 Msa0998810:CDS
CATGATTCTCTTTATAGCTT+TGG 0.310224 6_4:-80146822 None:intergenic
GAAGGTCTTCAATGTTGATT+TGG 0.313378 6_4:-80145776 Msa0998800:CDS
TCTATCTTGGAGAACCCTTA+TGG 0.321509 6_4:-80146240 Msa0998800:five_prime_UTR
AAAAGAAAAGGTATGATAAA+AGG 0.327187 6_4:-80145959 Msa0998800:intron
CCAGTTTCATCCTCAACCTT+TGG 0.333119 6_4:-80146776 None:intergenic
CCCGCTATGGTTCCTTCACC+TGG 0.338354 6_4:+80145591 None:intergenic
CACGAGGTTTCTCTCTATCT+TGG 0.351778 6_4:-80146253 None:intergenic
TGGAGAACCCTTATGGCTTC+CGG 0.352182 6_4:-80146233 Msa0998800:five_prime_UTR
GAGACGAAAGCTTTGGAATT+CGG 0.354559 6_4:+80146849 Msa0998810:CDS
TTTACTTCTTCACGAAGAAA+TGG 0.358278 6_4:-80145852 Msa0998800:intron
AAGGTCTTCAATGTTGATTT+GGG 0.360402 6_4:-80145775 Msa0998800:CDS
ACTGATGTCCTCAAAGTTGC+AGG 0.365020 6_4:+80146749 Msa0998810:CDS
CCAAAGGTTGAGGATGAAAC+TGG 0.365566 6_4:+80146776 Msa0998810:CDS
CTTGATCTTTCACAGATAAA+CGG 0.383472 6_4:-80146125 Msa0998800:five_prime_UTR
ATCCGGTTGGACCGATCATT+AGG 0.385219 6_4:+80146279 Msa0998810:CDS
CCGTTTGGTAAATACTCTAA+TGG 0.393550 6_4:-80146530 None:intergenic
AACAATGGCCATGCAATTAT+CGG 0.407133 6_4:-80146695 None:intergenic
CACATCAAGAATAGATTTGT+AGG 0.409793 6_4:-80146153 Msa0998800:five_prime_UTR
CTTGGTCATGGATCAATTGG+TGG 0.420675 6_4:+80146617 Msa0998810:CDS
ATTCTTGGTCATGGATCAAT+TGG 0.422464 6_4:+80146614 Msa0998810:CDS
AACAATAGAGAAGGGATTAG+TGG 0.425909 6_4:+80146565 Msa0998810:CDS
TTGGCCTTCCTGCAACTTTG+AGG 0.426838 6_4:-80146757 None:intergenic
TTCCTAATGATCGGTCCAAC+CGG 0.429299 6_4:-80146281 None:intergenic
GAAGCAGCTTCATCAAGGTT+TGG 0.431157 6_4:-80146020 Msa0998800:five_prime_UTR
TACTTTCACTGATTTGGAAC+CGG 0.433060 6_4:+80146214 Msa0998810:CDS
AAACGGGTCAGGAAGCTCTT+TGG 0.433591 6_4:-80146108 Msa0998800:five_prime_UTR
TAAGTGAGCATGGTTCTTCT+AGG 0.434640 6_4:+80146912 Msa0998810:CDS
ATTTGGAACCGGAAGCCATA+AGG 0.434669 6_4:+80146225 Msa0998810:CDS
AGAACAATGAAGTTCATGTT+TGG 0.436205 6_4:-80145750 Msa0998800:CDS
AGAGAAACCTCGTGTTTATC+CGG 0.437596 6_4:+80146262 Msa0998810:CDS
TTGATCTTTCACAGATAAAC+GGG 0.440877 6_4:-80146124 Msa0998800:five_prime_UTR
GCACCACAAGTGGAGATTCT+TGG 0.444515 6_4:+80146599 Msa0998810:CDS
TTTGTCTCCTTTGGAAGTGG+TGG 0.456303 6_4:+80146377 Msa0998810:CDS
ATGGAAGGAGACGAAAGCTT+TGG 0.460374 6_4:+80146842 Msa0998810:CDS
GTCAATGTGTTTAAGGTGGC+TGG 0.462560 6_4:+80146328 Msa0998810:CDS
TGCAGGAAGGCCAAAGGTTG+AGG 0.475529 6_4:+80146766 Msa0998810:CDS
GTTCTTTCGACAAAACCGTT+TGG 0.485795 6_4:-80146545 None:intergenic
TTGTGGTTGGAGTTCAACTT+TGG 0.490241 6_4:+80146652 Msa0998810:CDS
ACTTTGGAGAGTGTGGTTAA+CGG 0.492375 6_4:+80146668 Msa0998810:CDS
ACAATGAAGTTCATGTTTGG+TGG 0.496235 6_4:-80145747 Msa0998800:CDS
TATGATACTCATTGTGATGT+TGG 0.499749 6_4:-80145659 Msa0998800:intron
TATGAAACAATAAATGCTCC+TGG 0.502304 6_4:+80146065 Msa0998810:CDS
GCAGAACTAGAATGTTTGCT+TGG 0.513499 6_4:-80146482 None:intergenic
TTTGGAACCGGAAGCCATAA+GGG 0.516757 6_4:+80146226 Msa0998810:CDS
CCATTAGAGTATTTACCAAA+CGG 0.517275 6_4:+80146530 Msa0998810:CDS
CTTTCACAGATAAACGGGTC+AGG 0.522320 6_4:-80146119 Msa0998800:five_prime_UTR
ACTCAACTTGTGGAATCAAA+TGG 0.522375 6_4:-80145620 Msa0998800:intron
ACATTCCTCATTCCCACACT+TGG 0.525207 6_4:+80145684 Msa0998810:CDS
GTGGACCAAGTGTGGGAATG+AGG 0.530898 6_4:-80145689 Msa0998800:intron
AAAATCAAAGAATTGAGTAT+TGG 0.531003 6_4:+80146875 Msa0998810:CDS
AGGGATTAGTGGTTACATCA+TGG 0.531688 6_4:+80146576 Msa0998810:CDS
GAGTGGTCACAAATTCTTGT+GGG 0.531702 6_4:+80146448 Msa0998810:CDS
CAAAGCTATAAAGAGAATCA+TGG 0.532183 6_4:+80146823 Msa0998810:CDS
AAACCTCGTGTTTATCCGGT+TGG 0.532673 6_4:+80146266 Msa0998810:CDS
GTCGAAAGAACAATAGAGAA+GGG 0.534642 6_4:+80146557 Msa0998810:CDS
GATTGCATGGAAGAAGTTAG+TGG 0.537942 6_4:-80145708 Msa0998800:intron
AGAAGTTAGTGGACCAAGTG+TGG 0.541159 6_4:-80145697 Msa0998800:intron
CAGCTCCTGAGGAAAAGAAA+AGG 0.541604 6_4:-80145971 Msa0998800:intron
GAGTTGAAGCAGCTTCATCA+AGG 0.542626 6_4:-80146025 Msa0998800:five_prime_UTR
AGTGTTCAAGATGGATTGCA+TGG 0.550670 6_4:-80145721 Msa0998800:CDS
CAGGTTCAAGATTATGTGGA+AGG 0.557674 6_4:-80145794 Msa0998800:exon
GTTGCAGGTTCAAGATTATG+TGG 0.558142 6_4:-80145798 Msa0998800:intron
TACATCATGGGCACCACAAG+TGG 0.558951 6_4:+80146589 Msa0998810:CDS
CAAGTGGAGATTCTTGGTCA+TGG 0.561889 6_4:+80146605 Msa0998810:CDS
GGGATTAGTGGTTACATCAT+GGG 0.562903 6_4:+80146577 Msa0998810:CDS
TGTCGAAAGAACAATAGAGA+AGG 0.569681 6_4:+80146556 Msa0998810:CDS
GGAATCAAATGGCATAATCC+AGG 0.571019 6_4:-80145609 Msa0998800:intron
TTTGACGCATTCCTAATGAT+CGG 0.571708 6_4:-80146290 None:intergenic
AAATGGCATAATCCAGGTGA+AGG 0.571783 6_4:-80145603 Msa0998800:intron
GAGTTCAACTTTGGAGAGTG+TGG 0.577151 6_4:+80146661 Msa0998810:CDS
GGAAGCTCTTTGGCATGGAA+AGG 0.583521 6_4:-80146098 Msa0998800:five_prime_UTR
TGGTGGAAGAGTGTTCAAGA+TGG 0.583956 6_4:-80145730 Msa0998800:CDS
GAGTGTTCCACCACTTCCAA+AGG 0.587648 6_4:-80146384 None:intergenic
GGCCATTGTTTGCTGAGCAA+AGG 0.589122 6_4:+80146708 Msa0998810:CDS
ATCCTTTGCTCAGCAAACAA+TGG 0.589161 6_4:-80146710 None:intergenic
TTTAGCAACATCATGTGCAT+CGG 0.592165 6_4:-80145928 Msa0998800:intron
GGTCAGGAAGCTCTTTGGCA+TGG 0.593586 6_4:-80146103 Msa0998800:five_prime_UTR
TGAGTGGTCACAAATTCTTG+TGG 0.600819 6_4:+80146447 Msa0998810:CDS
TCTCTACTCTAGCATTGAAG+TGG 0.606601 6_4:+80146942 Msa0998810:CDS
AGAGAATAAAACAGCTCCTG+AGG 0.607500 6_4:-80145982 Msa0998800:five_prime_UTR
CAAAGTTGCAGGAAGGCCAA+AGG 0.614158 6_4:+80146760 Msa0998810:CDS
GAAGTTAGTGGACCAAGTGT+GGG 0.621400 6_4:-80145696 Msa0998800:intron
ACGGCGTGCCGATAATTGCA+TGG 0.628200 6_4:+80146687 Msa0998810:CDS
CAAAGGTTGAGGATGAAACT+GGG 0.629286 6_4:+80146777 Msa0998810:CDS
GCTATAAAGAGAATCATGGA+AGG 0.638274 6_4:+80146827 Msa0998810:CDS
AACTGGGATAATAAAACGAG+AGG 0.639083 6_4:+80146793 Msa0998810:CDS
TGCTGAAAACTAAAGCAACT+AGG 0.645210 6_4:-80145896 Msa0998800:intron
GAAACTGTACTAAGTGAGCA+TGG 0.648272 6_4:+80146902 Msa0998810:CDS
TGACCAAGAATCTCCACTTG+TGG 0.654029 6_4:-80146602 None:intergenic
ATGTCCTCAAAGTTGCAGGA+AGG 0.661626 6_4:+80146753 Msa0998810:CDS
AGGTCTTCAATGTTGATTTG+GGG 0.666155 6_4:-80145774 Msa0998800:CDS
ACATGTCAATGTGTTTAAGG+TGG 0.701932 6_4:+80146324 Msa0998810:CDS
GGTCCAACCGGATAAACACG+AGG 0.775344 6_4:-80146269 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGAAAAGGTATGATAAA+AGG - chr6_4:80145962-80145981 Msa0998800:intron 20.0%
!! CAAAAATTATCATTGTTTGA+CGG + chr6_4:80146179-80146198 Msa0998810:CDS 20.0%
!! AAAATCAAAGAATTGAGTAT+TGG + chr6_4:80146875-80146894 Msa0998810:CDS 20.0%
!!! AAAAGAAAAGGTATGATAAA+AGG - chr6_4:80145962-80145981 Msa0998800:intron 20.0%
!! CAAAAATTATCATTGTTTGA+CGG + chr6_4:80146179-80146198 Msa0998810:CDS 20.0%
!! AAAATCAAAGAATTGAGTAT+TGG + chr6_4:80146875-80146894 Msa0998810:CDS 20.0%
!! TATGAATACTTTCACTGATT+TGG + chr6_4:80146208-80146227 Msa0998810:CDS 25.0%
! ACAAAAAGAACAGAATTTGT+TGG - chr6_4:80146362-80146381 None:intergenic 25.0%
!! TATGAATACTTTCACTGATT+TGG + chr6_4:80146208-80146227 Msa0998810:CDS 25.0%
! ACAAAAAGAACAGAATTTGT+TGG - chr6_4:80146362-80146381 None:intergenic 25.0%
TATGATACTCATTGTGATGT+TGG - chr6_4:80145662-80145681 Msa0998800:intron 30.0%
AGAACAATGAAGTTCATGTT+TGG - chr6_4:80145753-80145772 Msa0998800:CDS 30.0%
!! AAGGTCTTCAATGTTGATTT+GGG - chr6_4:80145778-80145797 Msa0998800:CDS 30.0%
TTTACTTCTTCACGAAGAAA+TGG - chr6_4:80145855-80145874 Msa0998800:intron 30.0%
TATGAAACAATAAATGCTCC+TGG + chr6_4:80146065-80146084 Msa0998810:CDS 30.0%
TTGATCTTTCACAGATAAAC+GGG - chr6_4:80146127-80146146 Msa0998800:five_prime_UTR 30.0%
CTTGATCTTTCACAGATAAA+CGG - chr6_4:80146128-80146147 Msa0998800:five_prime_UTR 30.0%
CACATCAAGAATAGATTTGT+AGG - chr6_4:80146156-80146175 Msa0998800:five_prime_UTR 30.0%
CAAACATGTCAATGTGTTTA+AGG + chr6_4:80146321-80146340 Msa0998810:CDS 30.0%
!!! TCTAGTTCTGCTTATTTTAG+TGG + chr6_4:80146494-80146513 Msa0998810:CDS 30.0%
!!! TGCTTATTTTAGTGGACAAA+AGG + chr6_4:80146502-80146521 Msa0998810:CDS 30.0%
! CCATTAGAGTATTTACCAAA+CGG + chr6_4:80146530-80146549 Msa0998810:CDS 30.0%
!!! GTTTTTTAAGTCATTGTGGT+TGG + chr6_4:80146639-80146658 Msa0998810:CDS 30.0%
CATGATTCTCTTTATAGCTT+TGG - chr6_4:80146825-80146844 None:intergenic 30.0%
CAAAGCTATAAAGAGAATCA+TGG + chr6_4:80146823-80146842 Msa0998810:CDS 30.0%
TATGATACTCATTGTGATGT+TGG - chr6_4:80145662-80145681 Msa0998800:intron 30.0%
AGAACAATGAAGTTCATGTT+TGG - chr6_4:80145753-80145772 Msa0998800:CDS 30.0%
!! AAGGTCTTCAATGTTGATTT+GGG - chr6_4:80145778-80145797 Msa0998800:CDS 30.0%
TTTACTTCTTCACGAAGAAA+TGG - chr6_4:80145855-80145874 Msa0998800:intron 30.0%
TATGAAACAATAAATGCTCC+TGG + chr6_4:80146065-80146084 Msa0998810:CDS 30.0%
TTGATCTTTCACAGATAAAC+GGG - chr6_4:80146127-80146146 Msa0998800:five_prime_UTR 30.0%
CTTGATCTTTCACAGATAAA+CGG - chr6_4:80146128-80146147 Msa0998800:five_prime_UTR 30.0%
CACATCAAGAATAGATTTGT+AGG - chr6_4:80146156-80146175 Msa0998800:five_prime_UTR 30.0%
CAAACATGTCAATGTGTTTA+AGG + chr6_4:80146321-80146340 Msa0998810:CDS 30.0%
!!! TCTAGTTCTGCTTATTTTAG+TGG + chr6_4:80146494-80146513 Msa0998810:CDS 30.0%
!!! TGCTTATTTTAGTGGACAAA+AGG + chr6_4:80146502-80146521 Msa0998810:CDS 30.0%
! CCATTAGAGTATTTACCAAA+CGG + chr6_4:80146530-80146549 Msa0998810:CDS 30.0%
!!! GTTTTTTAAGTCATTGTGGT+TGG + chr6_4:80146639-80146658 Msa0998810:CDS 30.0%
CATGATTCTCTTTATAGCTT+TGG - chr6_4:80146825-80146844 None:intergenic 30.0%
CAAAGCTATAAAGAGAATCA+TGG + chr6_4:80146823-80146842 Msa0998810:CDS 30.0%
ACTCAACTTGTGGAATCAAA+TGG - chr6_4:80145623-80145642 Msa0998800:intron 35.0%
! AGTTTTGCAAACTCAACTTG+TGG - chr6_4:80145633-80145652 Msa0998800:intron 35.0%
ACAATGAAGTTCATGTTTGG+TGG - chr6_4:80145750-80145769 Msa0998800:CDS 35.0%
!! AGGTCTTCAATGTTGATTTG+GGG - chr6_4:80145777-80145796 Msa0998800:CDS 35.0%
! GAAGGTCTTCAATGTTGATT+TGG - chr6_4:80145779-80145798 Msa0998800:CDS 35.0%
ATGAGTTTCATTTGTGTTGC+AGG - chr6_4:80145816-80145835 Msa0998800:intron 35.0%
TGCTGAAAACTAAAGCAACT+AGG - chr6_4:80145899-80145918 Msa0998800:intron 35.0%
TTTAGCAACATCATGTGCAT+CGG - chr6_4:80145931-80145950 Msa0998800:intron 35.0%
! TCATACCTTTTCTTTTCCTC+AGG + chr6_4:80145966-80145985 Msa0998810:CDS 35.0%
TGGAAAGGAATAGAAAAACC+AGG - chr6_4:80146086-80146105 Msa0998800:five_prime_UTR 35.0%
!! TACTTTCACTGATTTGGAAC+CGG + chr6_4:80146214-80146233 Msa0998810:CDS 35.0%
TTTGACGCATTCCTAATGAT+CGG - chr6_4:80146293-80146312 None:intergenic 35.0%
ACATGTCAATGTGTTTAAGG+TGG + chr6_4:80146324-80146343 Msa0998810:CDS 35.0%
! TCTGTTCTTTTTGTCTCCTT+TGG + chr6_4:80146368-80146387 Msa0998810:CDS 35.0%
!!! CAACTCAATGAGTTAGCTTT+TGG + chr6_4:80146416-80146435 Msa0998810:CDS 35.0%
CCGTTTGGTAAATACTCTAA+TGG - chr6_4:80146533-80146552 None:intergenic 35.0%
TGTCGAAAGAACAATAGAGA+AGG + chr6_4:80146556-80146575 Msa0998810:CDS 35.0%
GTCGAAAGAACAATAGAGAA+GGG + chr6_4:80146557-80146576 Msa0998810:CDS 35.0%
AACAATAGAGAAGGGATTAG+TGG + chr6_4:80146565-80146584 Msa0998810:CDS 35.0%
ATTCTTGGTCATGGATCAAT+TGG + chr6_4:80146614-80146633 Msa0998810:CDS 35.0%
!!! GGTGGTTTTTTAAGTCATTG+TGG + chr6_4:80146635-80146654 Msa0998810:CDS 35.0%
AACAATGGCCATGCAATTAT+CGG - chr6_4:80146698-80146717 None:intergenic 35.0%
AACTGGGATAATAAAACGAG+AGG + chr6_4:80146793-80146812 Msa0998810:CDS 35.0%
GCTATAAAGAGAATCATGGA+AGG + chr6_4:80146827-80146846 Msa0998810:CDS 35.0%
ACTCAACTTGTGGAATCAAA+TGG - chr6_4:80145623-80145642 Msa0998800:intron 35.0%
! AGTTTTGCAAACTCAACTTG+TGG - chr6_4:80145633-80145652 Msa0998800:intron 35.0%
ACAATGAAGTTCATGTTTGG+TGG - chr6_4:80145750-80145769 Msa0998800:CDS 35.0%
!! AGGTCTTCAATGTTGATTTG+GGG - chr6_4:80145777-80145796 Msa0998800:CDS 35.0%
! GAAGGTCTTCAATGTTGATT+TGG - chr6_4:80145779-80145798 Msa0998800:CDS 35.0%
ATGAGTTTCATTTGTGTTGC+AGG - chr6_4:80145816-80145835 Msa0998800:intron 35.0%
TGCTGAAAACTAAAGCAACT+AGG - chr6_4:80145899-80145918 Msa0998800:intron 35.0%
TTTAGCAACATCATGTGCAT+CGG - chr6_4:80145931-80145950 Msa0998800:intron 35.0%
! TCATACCTTTTCTTTTCCTC+AGG + chr6_4:80145966-80145985 Msa0998810:CDS 35.0%
TGGAAAGGAATAGAAAAACC+AGG - chr6_4:80146086-80146105 Msa0998800:five_prime_UTR 35.0%
!! TACTTTCACTGATTTGGAAC+CGG + chr6_4:80146214-80146233 Msa0998810:CDS 35.0%
TTTGACGCATTCCTAATGAT+CGG - chr6_4:80146293-80146312 None:intergenic 35.0%
ACATGTCAATGTGTTTAAGG+TGG + chr6_4:80146324-80146343 Msa0998810:CDS 35.0%
! TCTGTTCTTTTTGTCTCCTT+TGG + chr6_4:80146368-80146387 Msa0998810:CDS 35.0%
!!! CAACTCAATGAGTTAGCTTT+TGG + chr6_4:80146416-80146435 Msa0998810:CDS 35.0%
CCGTTTGGTAAATACTCTAA+TGG - chr6_4:80146533-80146552 None:intergenic 35.0%
TGTCGAAAGAACAATAGAGA+AGG + chr6_4:80146556-80146575 Msa0998810:CDS 35.0%
GTCGAAAGAACAATAGAGAA+GGG + chr6_4:80146557-80146576 Msa0998810:CDS 35.0%
AACAATAGAGAAGGGATTAG+TGG + chr6_4:80146565-80146584 Msa0998810:CDS 35.0%
ATTCTTGGTCATGGATCAAT+TGG + chr6_4:80146614-80146633 Msa0998810:CDS 35.0%
!!! GGTGGTTTTTTAAGTCATTG+TGG + chr6_4:80146635-80146654 Msa0998810:CDS 35.0%
AACAATGGCCATGCAATTAT+CGG - chr6_4:80146698-80146717 None:intergenic 35.0%
AACTGGGATAATAAAACGAG+AGG + chr6_4:80146793-80146812 Msa0998810:CDS 35.0%
GCTATAAAGAGAATCATGGA+AGG + chr6_4:80146827-80146846 Msa0998810:CDS 35.0%
AAATGGCATAATCCAGGTGA+AGG - chr6_4:80145606-80145625 Msa0998800:intron 40.0%
GGAATCAAATGGCATAATCC+AGG - chr6_4:80145612-80145631 Msa0998800:intron 40.0%
GATTGCATGGAAGAAGTTAG+TGG - chr6_4:80145711-80145730 Msa0998800:intron 40.0%
!! AGTGTTCAAGATGGATTGCA+TGG - chr6_4:80145724-80145743 Msa0998800:CDS 40.0%
CAGGTTCAAGATTATGTGGA+AGG - chr6_4:80145797-80145816 Msa0998800:intron 40.0%
GTTGCAGGTTCAAGATTATG+TGG - chr6_4:80145801-80145820 Msa0998800:intron 40.0%
!! TAGGCGAGTTTTTGAAAGGA+GGG - chr6_4:80145880-80145899 Msa0998800:intron 40.0%
! CAACTAGGCGAGTTTTTGAA+AGG - chr6_4:80145884-80145903 Msa0998800:intron 40.0%
AGAGAATAAAACAGCTCCTG+AGG - chr6_4:80145985-80146004 Msa0998800:five_prime_UTR 40.0%
TCTATCTTGGAGAACCCTTA+TGG - chr6_4:80146243-80146262 Msa0998800:five_prime_UTR 40.0%
AGAGAAACCTCGTGTTTATC+CGG + chr6_4:80146262-80146281 Msa0998810:CDS 40.0%
!! CTTTTTGTCTCCTTTGGAAG+TGG + chr6_4:80146374-80146393 Msa0998810:CDS 40.0%
!! GCTTTTGGTCTAGAATTGAG+TGG + chr6_4:80146431-80146450 Msa0998810:CDS 40.0%
TGAGTGGTCACAAATTCTTG+TGG + chr6_4:80146447-80146466 Msa0998810:CDS 40.0%
GAGTGGTCACAAATTCTTGT+GGG + chr6_4:80146448-80146467 Msa0998810:CDS 40.0%
GCAGAACTAGAATGTTTGCT+TGG - chr6_4:80146485-80146504 None:intergenic 40.0%
GTTCTTTCGACAAAACCGTT+TGG - chr6_4:80146548-80146567 None:intergenic 40.0%
! AGGGATTAGTGGTTACATCA+TGG + chr6_4:80146576-80146595 Msa0998810:CDS 40.0%
! GGGATTAGTGGTTACATCAT+GGG + chr6_4:80146577-80146596 Msa0998810:CDS 40.0%
TTGTGGTTGGAGTTCAACTT+TGG + chr6_4:80146652-80146671 Msa0998810:CDS 40.0%
! ACTTTGGAGAGTGTGGTTAA+CGG + chr6_4:80146668-80146687 Msa0998810:CDS 40.0%
ATCCTTTGCTCAGCAAACAA+TGG - chr6_4:80146713-80146732 None:intergenic 40.0%
CAAAGGTTGAGGATGAAACT+GGG + chr6_4:80146777-80146796 Msa0998810:CDS 40.0%
!! GAGACGAAAGCTTTGGAATT+CGG + chr6_4:80146849-80146868 Msa0998810:CDS 40.0%
GAAACTGTACTAAGTGAGCA+TGG + chr6_4:80146902-80146921 Msa0998810:CDS 40.0%
TAAGTGAGCATGGTTCTTCT+AGG + chr6_4:80146912-80146931 Msa0998810:CDS 40.0%
! TCTCTACTCTAGCATTGAAG+TGG + chr6_4:80146942-80146961 Msa0998810:CDS 40.0%
AAATGGCATAATCCAGGTGA+AGG - chr6_4:80145606-80145625 Msa0998800:intron 40.0%
GGAATCAAATGGCATAATCC+AGG - chr6_4:80145612-80145631 Msa0998800:intron 40.0%
GATTGCATGGAAGAAGTTAG+TGG - chr6_4:80145711-80145730 Msa0998800:intron 40.0%
!! AGTGTTCAAGATGGATTGCA+TGG - chr6_4:80145724-80145743 Msa0998800:CDS 40.0%
CAGGTTCAAGATTATGTGGA+AGG - chr6_4:80145797-80145816 Msa0998800:intron 40.0%
GTTGCAGGTTCAAGATTATG+TGG - chr6_4:80145801-80145820 Msa0998800:intron 40.0%
!! TAGGCGAGTTTTTGAAAGGA+GGG - chr6_4:80145880-80145899 Msa0998800:intron 40.0%
! CAACTAGGCGAGTTTTTGAA+AGG - chr6_4:80145884-80145903 Msa0998800:intron 40.0%
AGAGAATAAAACAGCTCCTG+AGG - chr6_4:80145985-80146004 Msa0998800:five_prime_UTR 40.0%
TCTATCTTGGAGAACCCTTA+TGG - chr6_4:80146243-80146262 Msa0998800:five_prime_UTR 40.0%
AGAGAAACCTCGTGTTTATC+CGG + chr6_4:80146262-80146281 Msa0998810:CDS 40.0%
!! CTTTTTGTCTCCTTTGGAAG+TGG + chr6_4:80146374-80146393 Msa0998810:CDS 40.0%
!! GCTTTTGGTCTAGAATTGAG+TGG + chr6_4:80146431-80146450 Msa0998810:CDS 40.0%
TGAGTGGTCACAAATTCTTG+TGG + chr6_4:80146447-80146466 Msa0998810:CDS 40.0%
GAGTGGTCACAAATTCTTGT+GGG + chr6_4:80146448-80146467 Msa0998810:CDS 40.0%
GCAGAACTAGAATGTTTGCT+TGG - chr6_4:80146485-80146504 None:intergenic 40.0%
GTTCTTTCGACAAAACCGTT+TGG - chr6_4:80146548-80146567 None:intergenic 40.0%
! AGGGATTAGTGGTTACATCA+TGG + chr6_4:80146576-80146595 Msa0998810:CDS 40.0%
! GGGATTAGTGGTTACATCAT+GGG + chr6_4:80146577-80146596 Msa0998810:CDS 40.0%
TTGTGGTTGGAGTTCAACTT+TGG + chr6_4:80146652-80146671 Msa0998810:CDS 40.0%
! ACTTTGGAGAGTGTGGTTAA+CGG + chr6_4:80146668-80146687 Msa0998810:CDS 40.0%
ATCCTTTGCTCAGCAAACAA+TGG - chr6_4:80146713-80146732 None:intergenic 40.0%
CAAAGGTTGAGGATGAAACT+GGG + chr6_4:80146777-80146796 Msa0998810:CDS 40.0%
!! GAGACGAAAGCTTTGGAATT+CGG + chr6_4:80146849-80146868 Msa0998810:CDS 40.0%
GAAACTGTACTAAGTGAGCA+TGG + chr6_4:80146902-80146921 Msa0998810:CDS 40.0%
TAAGTGAGCATGGTTCTTCT+AGG + chr6_4:80146912-80146931 Msa0998810:CDS 40.0%
! TCTCTACTCTAGCATTGAAG+TGG + chr6_4:80146942-80146961 Msa0998810:CDS 40.0%
ACATTCCTCATTCCCACACT+TGG + chr6_4:80145684-80145703 Msa0998810:CDS 45.0%
! GAAGTTAGTGGACCAAGTGT+GGG - chr6_4:80145699-80145718 Msa0998800:intron 45.0%
! AGAAGTTAGTGGACCAAGTG+TGG - chr6_4:80145700-80145719 Msa0998800:intron 45.0%
!! TGGTGGAAGAGTGTTCAAGA+TGG - chr6_4:80145733-80145752 Msa0998800:CDS 45.0%
!! CTAGGCGAGTTTTTGAAAGG+AGG - chr6_4:80145881-80145900 Msa0998800:intron 45.0%
CAGCTCCTGAGGAAAAGAAA+AGG - chr6_4:80145974-80145993 Msa0998800:five_prime_UTR 45.0%
GAAGCAGCTTCATCAAGGTT+TGG - chr6_4:80146023-80146042 Msa0998800:five_prime_UTR 45.0%
GAGTTGAAGCAGCTTCATCA+AGG - chr6_4:80146028-80146047 Msa0998800:five_prime_UTR 45.0%
CTTTCACAGATAAACGGGTC+AGG - chr6_4:80146122-80146141 Msa0998800:five_prime_UTR 45.0%
! ATTTGGAACCGGAAGCCATA+AGG + chr6_4:80146225-80146244 Msa0998810:CDS 45.0%
! TTTGGAACCGGAAGCCATAA+GGG + chr6_4:80146226-80146245 Msa0998810:CDS 45.0%
CACGAGGTTTCTCTCTATCT+TGG - chr6_4:80146256-80146275 None:intergenic 45.0%
AAACCTCGTGTTTATCCGGT+TGG + chr6_4:80146266-80146285 Msa0998810:CDS 45.0%
TTCCTAATGATCGGTCCAAC+CGG - chr6_4:80146284-80146303 None:intergenic 45.0%
! GTCAATGTGTTTAAGGTGGC+TGG + chr6_4:80146328-80146347 Msa0998810:CDS 45.0%
! TTTGTCTCCTTTGGAAGTGG+TGG + chr6_4:80146377-80146396 Msa0998810:CDS 45.0%
TGACCAAGAATCTCCACTTG+TGG - chr6_4:80146605-80146624 None:intergenic 45.0%
CAAGTGGAGATTCTTGGTCA+TGG + chr6_4:80146605-80146624 Msa0998810:CDS 45.0%
CTTGGTCATGGATCAATTGG+TGG + chr6_4:80146617-80146636 Msa0998810:CDS 45.0%
! GAGTTCAACTTTGGAGAGTG+TGG + chr6_4:80146661-80146680 Msa0998810:CDS 45.0%
ACTGATGTCCTCAAAGTTGC+AGG + chr6_4:80146749-80146768 Msa0998810:CDS 45.0%
ATGTCCTCAAAGTTGCAGGA+AGG + chr6_4:80146753-80146772 Msa0998810:CDS 45.0%
CCAGTTTCATCCTCAACCTT+TGG - chr6_4:80146779-80146798 None:intergenic 45.0%
CCAAAGGTTGAGGATGAAAC+TGG + chr6_4:80146776-80146795 Msa0998810:CDS 45.0%
ATGGAAGGAGACGAAAGCTT+TGG + chr6_4:80146842-80146861 Msa0998810:CDS 45.0%
ACATTCCTCATTCCCACACT+TGG + chr6_4:80145684-80145703 Msa0998810:CDS 45.0%
! GAAGTTAGTGGACCAAGTGT+GGG - chr6_4:80145699-80145718 Msa0998800:intron 45.0%
! AGAAGTTAGTGGACCAAGTG+TGG - chr6_4:80145700-80145719 Msa0998800:intron 45.0%
!! TGGTGGAAGAGTGTTCAAGA+TGG - chr6_4:80145733-80145752 Msa0998800:CDS 45.0%
!! CTAGGCGAGTTTTTGAAAGG+AGG - chr6_4:80145881-80145900 Msa0998800:intron 45.0%
CAGCTCCTGAGGAAAAGAAA+AGG - chr6_4:80145974-80145993 Msa0998800:five_prime_UTR 45.0%
GAAGCAGCTTCATCAAGGTT+TGG - chr6_4:80146023-80146042 Msa0998800:five_prime_UTR 45.0%
GAGTTGAAGCAGCTTCATCA+AGG - chr6_4:80146028-80146047 Msa0998800:five_prime_UTR 45.0%
CTTTCACAGATAAACGGGTC+AGG - chr6_4:80146122-80146141 Msa0998800:five_prime_UTR 45.0%
! ATTTGGAACCGGAAGCCATA+AGG + chr6_4:80146225-80146244 Msa0998810:CDS 45.0%
! TTTGGAACCGGAAGCCATAA+GGG + chr6_4:80146226-80146245 Msa0998810:CDS 45.0%
CACGAGGTTTCTCTCTATCT+TGG - chr6_4:80146256-80146275 None:intergenic 45.0%
AAACCTCGTGTTTATCCGGT+TGG + chr6_4:80146266-80146285 Msa0998810:CDS 45.0%
TTCCTAATGATCGGTCCAAC+CGG - chr6_4:80146284-80146303 None:intergenic 45.0%
! GTCAATGTGTTTAAGGTGGC+TGG + chr6_4:80146328-80146347 Msa0998810:CDS 45.0%
! TTTGTCTCCTTTGGAAGTGG+TGG + chr6_4:80146377-80146396 Msa0998810:CDS 45.0%
TGACCAAGAATCTCCACTTG+TGG - chr6_4:80146605-80146624 None:intergenic 45.0%
CAAGTGGAGATTCTTGGTCA+TGG + chr6_4:80146605-80146624 Msa0998810:CDS 45.0%
CTTGGTCATGGATCAATTGG+TGG + chr6_4:80146617-80146636 Msa0998810:CDS 45.0%
! GAGTTCAACTTTGGAGAGTG+TGG + chr6_4:80146661-80146680 Msa0998810:CDS 45.0%
ACTGATGTCCTCAAAGTTGC+AGG + chr6_4:80146749-80146768 Msa0998810:CDS 45.0%
ATGTCCTCAAAGTTGCAGGA+AGG + chr6_4:80146753-80146772 Msa0998810:CDS 45.0%
CCAGTTTCATCCTCAACCTT+TGG - chr6_4:80146779-80146798 None:intergenic 45.0%
CCAAAGGTTGAGGATGAAAC+TGG + chr6_4:80146776-80146795 Msa0998810:CDS 45.0%
ATGGAAGGAGACGAAAGCTT+TGG + chr6_4:80146842-80146861 Msa0998810:CDS 45.0%
GGAAGCTCTTTGGCATGGAA+AGG - chr6_4:80146101-80146120 Msa0998800:five_prime_UTR 50.0%
AAACGGGTCAGGAAGCTCTT+TGG - chr6_4:80146111-80146130 Msa0998800:five_prime_UTR 50.0%
TGGAGAACCCTTATGGCTTC+CGG - chr6_4:80146236-80146255 Msa0998800:five_prime_UTR 50.0%
ATCCGGTTGGACCGATCATT+AGG + chr6_4:80146279-80146298 Msa0998810:CDS 50.0%
GAGTGTTCCACCACTTCCAA+AGG - chr6_4:80146387-80146406 None:intergenic 50.0%
TACATCATGGGCACCACAAG+TGG + chr6_4:80146589-80146608 Msa0998810:CDS 50.0%
GCACCACAAGTGGAGATTCT+TGG + chr6_4:80146599-80146618 Msa0998810:CDS 50.0%
! GGCCATTGTTTGCTGAGCAA+AGG + chr6_4:80146708-80146727 Msa0998810:CDS 50.0%
! TTGGCCTTCCTGCAACTTTG+AGG - chr6_4:80146760-80146779 None:intergenic 50.0%
CAAAGTTGCAGGAAGGCCAA+AGG + chr6_4:80146760-80146779 Msa0998810:CDS 50.0%
GGAAGCTCTTTGGCATGGAA+AGG - chr6_4:80146101-80146120 Msa0998800:five_prime_UTR 50.0%
AAACGGGTCAGGAAGCTCTT+TGG - chr6_4:80146111-80146130 Msa0998800:five_prime_UTR 50.0%
TGGAGAACCCTTATGGCTTC+CGG - chr6_4:80146236-80146255 Msa0998800:five_prime_UTR 50.0%
ATCCGGTTGGACCGATCATT+AGG + chr6_4:80146279-80146298 Msa0998810:CDS 50.0%
GAGTGTTCCACCACTTCCAA+AGG - chr6_4:80146387-80146406 None:intergenic 50.0%
TACATCATGGGCACCACAAG+TGG + chr6_4:80146589-80146608 Msa0998810:CDS 50.0%
GCACCACAAGTGGAGATTCT+TGG + chr6_4:80146599-80146618 Msa0998810:CDS 50.0%
! GGCCATTGTTTGCTGAGCAA+AGG + chr6_4:80146708-80146727 Msa0998810:CDS 50.0%
! TTGGCCTTCCTGCAACTTTG+AGG - chr6_4:80146760-80146779 None:intergenic 50.0%
CAAAGTTGCAGGAAGGCCAA+AGG + chr6_4:80146760-80146779 Msa0998810:CDS 50.0%
GTGGACCAAGTGTGGGAATG+AGG - chr6_4:80145692-80145711 Msa0998800:intron 55.0%
GGTCAGGAAGCTCTTTGGCA+TGG - chr6_4:80146106-80146125 Msa0998800:five_prime_UTR 55.0%
GGTCCAACCGGATAAACACG+AGG - chr6_4:80146272-80146291 None:intergenic 55.0%
! ACGGCGTGCCGATAATTGCA+TGG + chr6_4:80146687-80146706 Msa0998810:CDS 55.0%
TGCAGGAAGGCCAAAGGTTG+AGG + chr6_4:80146766-80146785 Msa0998810:CDS 55.0%
GTGGACCAAGTGTGGGAATG+AGG - chr6_4:80145692-80145711 Msa0998800:intron 55.0%
GGTCAGGAAGCTCTTTGGCA+TGG - chr6_4:80146106-80146125 Msa0998800:five_prime_UTR 55.0%
GGTCCAACCGGATAAACACG+AGG - chr6_4:80146272-80146291 None:intergenic 55.0%
! ACGGCGTGCCGATAATTGCA+TGG + chr6_4:80146687-80146706 Msa0998810:CDS 55.0%
TGCAGGAAGGCCAAAGGTTG+AGG + chr6_4:80146766-80146785 Msa0998810:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 80145597 80146970 80145597 ID=Msa0998810;Name=Msa0998810
chr6_4 mRNA 80145597 80146970 80145597 ID=Msa0998810-mRNA-1;Parent=Msa0998810;Name=Msa0998810-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|457
chr6_4 exon 80145597 80146970 80145597 ID=Msa0998810-mRNA-1:exon:15196;Parent=Msa0998810-mRNA-1
chr6_4 CDS 80145597 80146970 80145597 ID=Msa0998810-mRNA-1:cds;Parent=Msa0998810-mRNA-1
Gene Sequence

>Msa0998810

ATGGTTCCTTCACCTGGATTATGCCATTTGATTCCACAAGTTGAGTTTGCAAAACTATTAATCCAACATCACAATGAGTATCATATCACATTCCTCATTCCCACACTTGGTCCACTAACTTCTTCCATGCAATCCATCTTGAACACTCTTCCACCAAACATGAACTTCATTGTTCTTCCCCAAATCAACATTGAAGACCTTCCACATAATCTTGAACCTGCAACACAAATGAAACTCATAGTGAAACACTCTATTCCATTTCTTCGTGAAGAAGTAAAATCCCTCCTTTCAAAAACTCGCCTAGTTGCTTTAGTTTTCAGCATGTTTTCAACCGATGCACATGATGTTGCTAAACATTTCAACCTTTTATCATACCTTTTCTTTTCCTCAGGAGCTGTTTTATTCTCTTTATTTATCACTATTCCAAACCTTGATGAAGCTGCTTCAACTCAGTTCTTAGAATCAAGTTATGAAACAATAAATGCTCCTGGTTTTTCTATTCCTTTCCATGCCAAAGAGCTTCCTGACCCGTTTATCTGTGAAAGATCAAGTGATACCTACAAATCTATTCTTGATGTGTGTCAAAAATTATCATTGTTTGACGGTGTTATTATGAATACTTTCACTGATTTGGAACCGGAAGCCATAAGGGTTCTCCAAGATAGAGAGAAACCTCGTGTTTATCCGGTTGGACCGATCATTAGGAATGCGTCAAATAATGAAGCAAACATGTCAATGTGTTTAAGGTGGCTGGAAAATCAGCCAACAAATTCTGTTCTTTTTGTCTCCTTTGGAAGTGGTGGAACACTCTCTCAAGATCAACTCAATGAGTTAGCTTTTGGTCTAGAATTGAGTGGTCACAAATTCTTGTGGGTTGTGAGAGCTCCAAGCAAACATTCTAGTTCTGCTTATTTTAGTGGACAAAAGGATGATCCATTAGAGTATTTACCAAACGGTTTTGTCGAAAGAACAATAGAGAAGGGATTAGTGGTTACATCATGGGCACCACAAGTGGAGATTCTTGGTCATGGATCAATTGGTGGTTTTTTAAGTCATTGTGGTTGGAGTTCAACTTTGGAGAGTGTGGTTAACGGCGTGCCGATAATTGCATGGCCATTGTTTGCTGAGCAAAGGATGAATGCAAAATTACTCACTGATGTCCTCAAAGTTGCAGGAAGGCCAAAGGTTGAGGATGAAACTGGGATAATAAAACGAGAGGAAGTCGCCAAAGCTATAAAGAGAATCATGGAAGGAGACGAAAGCTTTGGAATTCGGAAGAAAATCAAAGAATTGAGTATTGGTGCTGAAACTGTACTAAGTGAGCATGGTTCTTCTAGGAAAGCACTCTCTACTCTAGCATTGAAGTGGCAATAA

Protein sequence

>Msa0998810

MVPSPGLCHLIPQVEFAKLLIQHHNEYHITFLIPTLGPLTSSMQSILNTLPPNMNFIVLPQINIEDLPHNLEPATQMKLIVKHSIPFLREEVKSLLSKTRLVALVFSMFSTDAHDVAKHFNLLSYLFFSSGAVLFSLFITIPNLDEAASTQFLESSYETINAPGFSIPFHAKELPDPFICERSSDTYKSILDVCQKLSLFDGVIMNTFTDLEPEAIRVLQDREKPRVYPVGPIIRNASNNEANMSMCLRWLENQPTNSVLFVSFGSGGTLSQDQLNELAFGLELSGHKFLWVVRAPSKHSSSAYFSGQKDDPLEYLPNGFVERTIEKGLVVTSWAPQVEILGHGSIGGFLSHCGWSSTLESVVNGVPIIAWPLFAEQRMNAKLLTDVLKVAGRPKVEDETGIIKREEVAKAIKRIMEGDESFGIRKKIKELSIGAETVLSEHGSSRKALSTLALKWQ*