AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0557630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557630 MtrunA17_Chr4g0046891 97.133 279 8 0 1 279 1 279 0.0 561
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557630 AT4G26415.1 45.299 234 61 10 3 192 7 217 3.23e-44 152

Find 59 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTCCTCAAGAACTCTT+TGG 0.228130 4_1:-56080361 Msa0557630:CDS
TCAATGAATATAGTGGAATA+AGG 0.272127 4_1:-56080092 Msa0557630:CDS
TGGTGTTGTGGCAAAGTTAA+TGG 0.280238 4_1:-56079836 Msa0557630:CDS
GCCATTTGAGAGGCATGATT+TGG 0.298125 4_1:-56079716 Msa0557630:CDS
TCCATGTATAGGTCATCTTT+TGG 0.313265 4_1:-56079976 Msa0557630:CDS
TCTTATGCCTTTCTTCATCT+TGG 0.319608 4_1:+56080335 None:intergenic
TTTCTCCTCAAGAACTCTTT+GGG 0.349291 4_1:-56080360 Msa0557630:CDS
AACCAACAAAATAGTACTAT+TGG 0.366556 4_1:-56080276 Msa0557630:CDS
TGGATATTGTATTATGAAAC+CGG 0.367697 4_1:-56079611 Msa0557630:CDS
GGATGAGTAGTGTTGATTGT+AGG 0.385703 4_1:-56079759 Msa0557630:CDS
CAATGAATATAGTGGAATAA+GGG 0.392950 4_1:-56080091 Msa0557630:CDS
AGAACCAAAGCTTGATGAAA+AGG 0.407802 4_1:-56079911 Msa0557630:CDS
GCCATAGCTTCTAGAGAAAC+CGG 0.424661 4_1:+56079592 None:intergenic
GGTGTTGTGGCAAAGTTAAT+GGG 0.432813 4_1:-56079835 Msa0557630:CDS
TGTGGCAAAGTTAATGGGTT+TGG 0.433784 4_1:-56079830 Msa0557630:CDS
TCTTATACTACAATTAGAAA+TGG 0.443850 4_1:-56080142 Msa0557630:CDS
CTCCTTGGTTGCCAACTACT+AGG 0.453422 4_1:+56079562 None:intergenic
GTTAGAAGAAGAAATAGGTC+TGG 0.472977 4_1:-56079649 Msa0557630:CDS
AGTATAAGATCTTCTAATGT+TGG 0.477524 4_1:+56080156 None:intergenic
TCCAAATCATGCCTCTCAAA+TGG 0.478781 4_1:+56079715 None:intergenic
TGCTGCTTGTGATGTCAACT+TGG 0.485632 4_1:+56080232 None:intergenic
AGTACTATTGGCAATGGCAT+TGG 0.489373 4_1:-56080264 Msa0557630:CDS
CTAATCTAAACATATCTCCT+TGG 0.491234 4_1:+56079547 None:intergenic
AAAACTAGCAATGGACATGC+AGG 0.491726 4_1:-56079689 Msa0557630:CDS
CCCAAAAGATGACCTATACA+TGG 0.498041 4_1:+56079975 None:intergenic
TTGTGATGTCAACTTGGCTA+TGG 0.503039 4_1:+56080238 None:intergenic
TTCTCCCCAGCAACTGTTGG+TGG 0.503702 4_1:+56079877 None:intergenic
GTAGGAGACAAAATATAAGA+AGG 0.511223 4_1:-56079741 Msa0557630:CDS
ATGGAAGAGATTCCATGTAT+AGG 0.512387 4_1:-56079987 Msa0557630:CDS
ATTAACTTTGCCACAACACC+AGG 0.513967 4_1:+56079838 None:intergenic
TGGCAGGAGGTCCTAGTAGT+TGG 0.521625 4_1:-56079573 Msa0557630:CDS
ACCGGTTTCTCTAGAAGCTA+TGG 0.522607 4_1:-56079593 Msa0557630:CDS
TTGCTGGGGAGAACGTGGTT+TGG 0.527912 4_1:-56079867 Msa0557630:CDS
ACATTGTTAGAAGAAGAAAT+AGG 0.529346 4_1:-56079654 Msa0557630:CDS
ATGCTTTGAATCAATATCCA+AGG 0.531501 4_1:-56080020 Msa0557630:CDS
AAATGGAGGAAGAGATGGCA+AGG 0.533678 4_1:-56080125 Msa0557630:CDS
ATTAGAAATGGAGGAAGAGA+TGG 0.541356 4_1:-56080130 Msa0557630:CDS
GAGTTCTTGAGGAGAAAGAA+TGG 0.549925 4_1:+56080366 None:intergenic
TTGGGAGCCAAGATGAAGAA+AGG 0.561593 4_1:-56080342 Msa0557630:CDS
CAAAATAGTACTATTGGCAA+TGG 0.563916 4_1:-56080270 Msa0557630:CDS
CTTCCATCAAGTGAAAACCT+TGG 0.575355 4_1:+56080003 None:intergenic
GTCCTAGTAGTTGGCAACCA+AGG 0.577078 4_1:-56079564 Msa0557630:CDS
AATGAATATAGTGGAATAAG+GGG 0.579962 4_1:-56080090 Msa0557630:CDS
TATACTACAATTAGAAATGG+AGG 0.596710 4_1:-56080139 Msa0557630:CDS
TGGCTCCCAAAGAGTTCTTG+AGG 0.597986 4_1:+56080355 None:intergenic
GAAGCTATTCCAGTGTCAGT+AGG 0.605402 4_1:-56079808 Msa0557630:CDS
TTTGGAGAGAAAACTAGCAA+TGG 0.605568 4_1:-56079698 Msa0557630:CDS
AACGTGGTTTGGTGTAAACC+TGG 0.608504 4_1:-56079856 Msa0557630:CDS
GTTTCTCTAGAAGCTATGGC+AGG 0.610709 4_1:-56079589 Msa0557630:CDS
AACAGTTGCTGGGGAGAACG+TGG 0.612915 4_1:-56079872 Msa0557630:CDS
AATATAGTGGAATAAGGGGA+AGG 0.620558 4_1:-56080086 Msa0557630:CDS
GGAGACAAAATATAAGAAGG+AGG 0.626425 4_1:-56079738 Msa0557630:CDS
TAAGAAGGAGGCCATTTGAG+AGG 0.627512 4_1:-56079726 Msa0557630:CDS
CTGACATATTAAGATCTGCA+AGG 0.639107 4_1:-56080044 Msa0557630:CDS
AGTTGACATCACAAGCAGCA+AGG 0.656859 4_1:-56080229 Msa0557630:CDS
ACGTTCTCCCCAGCAACTGT+TGG 0.657823 4_1:+56079874 None:intergenic
TCTCTAGAAGCTATGGCAGG+AGG 0.665560 4_1:-56079586 Msa0557630:CDS
TTGGTGTAAACCTGGTGTTG+TGG 0.669247 4_1:-56079848 Msa0557630:CDS
AAACTAGCAATGGACATGCA+GGG 0.676573 4_1:-56079688 Msa0557630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTATACTACAATTAGAAA+TGG - chr4_1:56079779-56079798 Msa0557630:CDS 20.0%
!! TCTTATACTACAATTAGAAA+TGG - chr4_1:56079779-56079798 Msa0557630:CDS 20.0%
! AACCAACAAAATAGTACTAT+TGG - chr4_1:56079645-56079664 Msa0557630:CDS 25.0%
! AGTATAAGATCTTCTAATGT+TGG + chr4_1:56079768-56079787 None:intergenic 25.0%
! TATACTACAATTAGAAATGG+AGG - chr4_1:56079782-56079801 Msa0557630:CDS 25.0%
! GAAAAACTCAATGAATATAG+TGG - chr4_1:56079822-56079841 Msa0557630:CDS 25.0%
!! TCAATGAATATAGTGGAATA+AGG - chr4_1:56079829-56079848 Msa0557630:CDS 25.0%
!! CAATGAATATAGTGGAATAA+GGG - chr4_1:56079830-56079849 Msa0557630:CDS 25.0%
!! AATGAATATAGTGGAATAAG+GGG - chr4_1:56079831-56079850 Msa0557630:CDS 25.0%
! ACATTGTTAGAAGAAGAAAT+AGG - chr4_1:56080267-56080286 Msa0557630:CDS 25.0%
! TGGATATTGTATTATGAAAC+CGG - chr4_1:56080310-56080329 Msa0557630:CDS 25.0%
! AACCAACAAAATAGTACTAT+TGG - chr4_1:56079645-56079664 Msa0557630:CDS 25.0%
! AGTATAAGATCTTCTAATGT+TGG + chr4_1:56079768-56079787 None:intergenic 25.0%
! TATACTACAATTAGAAATGG+AGG - chr4_1:56079782-56079801 Msa0557630:CDS 25.0%
! GAAAAACTCAATGAATATAG+TGG - chr4_1:56079822-56079841 Msa0557630:CDS 25.0%
!! TCAATGAATATAGTGGAATA+AGG - chr4_1:56079829-56079848 Msa0557630:CDS 25.0%
!! CAATGAATATAGTGGAATAA+GGG - chr4_1:56079830-56079849 Msa0557630:CDS 25.0%
!! AATGAATATAGTGGAATAAG+GGG - chr4_1:56079831-56079850 Msa0557630:CDS 25.0%
! ACATTGTTAGAAGAAGAAAT+AGG - chr4_1:56080267-56080286 Msa0557630:CDS 25.0%
! TGGATATTGTATTATGAAAC+CGG - chr4_1:56080310-56080329 Msa0557630:CDS 25.0%
!!! ATTTTGTTGGTTTAGAGTTG+AGG + chr4_1:56079637-56079656 None:intergenic 30.0%
! TGCCAATAGTACTATTTTGT+TGG + chr4_1:56079650-56079669 None:intergenic 30.0%
CAAAATAGTACTATTGGCAA+TGG - chr4_1:56079651-56079670 Msa0557630:CDS 30.0%
AGTTGTCACATTGCAAAAAA+GGG + chr4_1:56079725-56079744 None:intergenic 30.0%
! ATGCTTTGAATCAATATCCA+AGG - chr4_1:56079901-56079920 Msa0557630:CDS 30.0%
! ATAACCTTTTCATCAAGCTT+TGG + chr4_1:56080017-56080036 None:intergenic 30.0%
AAAGATCTGACAAAAAAGAG+AGG - chr4_1:56080141-56080160 Msa0557630:CDS 30.0%
GTAGGAGACAAAATATAAGA+AGG - chr4_1:56080180-56080199 Msa0557630:CDS 30.0%
!!! TCTGGTTTTTGCTCTAAAAA+TGG - chr4_1:56080290-56080309 Msa0557630:CDS 30.0%
!!! ATTTTGTTGGTTTAGAGTTG+AGG + chr4_1:56079637-56079656 None:intergenic 30.0%
! TGCCAATAGTACTATTTTGT+TGG + chr4_1:56079650-56079669 None:intergenic 30.0%
CAAAATAGTACTATTGGCAA+TGG - chr4_1:56079651-56079670 Msa0557630:CDS 30.0%
AGTTGTCACATTGCAAAAAA+GGG + chr4_1:56079725-56079744 None:intergenic 30.0%
! ATGCTTTGAATCAATATCCA+AGG - chr4_1:56079901-56079920 Msa0557630:CDS 30.0%
! ATAACCTTTTCATCAAGCTT+TGG + chr4_1:56080017-56080036 None:intergenic 30.0%
AAAGATCTGACAAAAAAGAG+AGG - chr4_1:56080141-56080160 Msa0557630:CDS 30.0%
GTAGGAGACAAAATATAAGA+AGG - chr4_1:56080180-56080199 Msa0557630:CDS 30.0%
!!! TCTGGTTTTTGCTCTAAAAA+TGG - chr4_1:56080290-56080309 Msa0557630:CDS 30.0%
TTTCTCCTCAAGAACTCTTT+GGG - chr4_1:56079561-56079580 Msa0557630:CDS 35.0%
TCTTATGCCTTTCTTCATCT+TGG + chr4_1:56079589-56079608 None:intergenic 35.0%
GTTGTCACATTGCAAAAAAG+GGG + chr4_1:56079724-56079743 None:intergenic 35.0%
GAGTTGTCACATTGCAAAAA+AGG + chr4_1:56079726-56079745 None:intergenic 35.0%
ATTAGAAATGGAGGAAGAGA+TGG - chr4_1:56079791-56079810 Msa0557630:CDS 35.0%
! AATATAGTGGAATAAGGGGA+AGG - chr4_1:56079835-56079854 Msa0557630:CDS 35.0%
CTGACATATTAAGATCTGCA+AGG - chr4_1:56079877-56079896 Msa0557630:CDS 35.0%
! TATCCAAGGTTTTCACTTGA+TGG - chr4_1:56079915-56079934 Msa0557630:CDS 35.0%
ATGGAAGAGATTCCATGTAT+AGG - chr4_1:56079934-56079953 Msa0557630:CDS 35.0%
! TCCATGTATAGGTCATCTTT+TGG - chr4_1:56079945-56079964 Msa0557630:CDS 35.0%
! CCATGTATAGGTCATCTTTT+GGG - chr4_1:56079946-56079965 Msa0557630:CDS 35.0%
!!! TCATCTTTTGGGACTATAGA+AGG - chr4_1:56079957-56079976 Msa0557630:CDS 35.0%
AGAACCAAAGCTTGATGAAA+AGG - chr4_1:56080010-56080029 Msa0557630:CDS 35.0%
GGAGACAAAATATAAGAAGG+AGG - chr4_1:56080183-56080202 Msa0557630:CDS 35.0%
TTTGGAGAGAAAACTAGCAA+TGG - chr4_1:56080223-56080242 Msa0557630:CDS 35.0%
GTTAGAAGAAGAAATAGGTC+TGG - chr4_1:56080272-56080291 Msa0557630:CDS 35.0%
TTTCTCCTCAAGAACTCTTT+GGG - chr4_1:56079561-56079580 Msa0557630:CDS 35.0%
TCTTATGCCTTTCTTCATCT+TGG + chr4_1:56079589-56079608 None:intergenic 35.0%
GTTGTCACATTGCAAAAAAG+GGG + chr4_1:56079724-56079743 None:intergenic 35.0%
GAGTTGTCACATTGCAAAAA+AGG + chr4_1:56079726-56079745 None:intergenic 35.0%
ATTAGAAATGGAGGAAGAGA+TGG - chr4_1:56079791-56079810 Msa0557630:CDS 35.0%
! AATATAGTGGAATAAGGGGA+AGG - chr4_1:56079835-56079854 Msa0557630:CDS 35.0%
CTGACATATTAAGATCTGCA+AGG - chr4_1:56079877-56079896 Msa0557630:CDS 35.0%
! TATCCAAGGTTTTCACTTGA+TGG - chr4_1:56079915-56079934 Msa0557630:CDS 35.0%
ATGGAAGAGATTCCATGTAT+AGG - chr4_1:56079934-56079953 Msa0557630:CDS 35.0%
! TCCATGTATAGGTCATCTTT+TGG - chr4_1:56079945-56079964 Msa0557630:CDS 35.0%
! CCATGTATAGGTCATCTTTT+GGG - chr4_1:56079946-56079965 Msa0557630:CDS 35.0%
!!! TCATCTTTTGGGACTATAGA+AGG - chr4_1:56079957-56079976 Msa0557630:CDS 35.0%
AGAACCAAAGCTTGATGAAA+AGG - chr4_1:56080010-56080029 Msa0557630:CDS 35.0%
GGAGACAAAATATAAGAAGG+AGG - chr4_1:56080183-56080202 Msa0557630:CDS 35.0%
TTTGGAGAGAAAACTAGCAA+TGG - chr4_1:56080223-56080242 Msa0557630:CDS 35.0%
GTTAGAAGAAGAAATAGGTC+TGG - chr4_1:56080272-56080291 Msa0557630:CDS 35.0%
GAGTTCTTGAGGAGAAAGAA+TGG + chr4_1:56079558-56079577 None:intergenic 40.0%
CTTTCTCCTCAAGAACTCTT+TGG - chr4_1:56079560-56079579 Msa0557630:CDS 40.0%
AGTACTATTGGCAATGGCAT+TGG - chr4_1:56079657-56079676 Msa0557630:CDS 40.0%
TTGTGATGTCAACTTGGCTA+TGG + chr4_1:56079686-56079705 None:intergenic 40.0%
CTTCCATCAAGTGAAAACCT+TGG + chr4_1:56079921-56079940 None:intergenic 40.0%
CCCAAAAGATGACCTATACA+TGG + chr4_1:56079949-56079968 None:intergenic 40.0%
ATTAACTTTGCCACAACACC+AGG + chr4_1:56080086-56080105 None:intergenic 40.0%
!! TGGTGTTGTGGCAAAGTTAA+TGG - chr4_1:56080085-56080104 Msa0557630:CDS 40.0%
! GGTGTTGTGGCAAAGTTAAT+GGG - chr4_1:56080086-56080105 Msa0557630:CDS 40.0%
!! TGTGGCAAAGTTAATGGGTT+TGG - chr4_1:56080091-56080110 Msa0557630:CDS 40.0%
! CTTTTTCTACCTACTGACAC+TGG + chr4_1:56080125-56080144 None:intergenic 40.0%
!! GGATGAGTAGTGTTGATTGT+AGG - chr4_1:56080162-56080181 Msa0557630:CDS 40.0%
TCCAAATCATGCCTCTCAAA+TGG + chr4_1:56080209-56080228 None:intergenic 40.0%
AAAACTAGCAATGGACATGC+AGG - chr4_1:56080232-56080251 Msa0557630:CDS 40.0%
AAACTAGCAATGGACATGCA+GGG - chr4_1:56080233-56080252 Msa0557630:CDS 40.0%
GAGTTCTTGAGGAGAAAGAA+TGG + chr4_1:56079558-56079577 None:intergenic 40.0%
CTTTCTCCTCAAGAACTCTT+TGG - chr4_1:56079560-56079579 Msa0557630:CDS 40.0%
AGTACTATTGGCAATGGCAT+TGG - chr4_1:56079657-56079676 Msa0557630:CDS 40.0%
TTGTGATGTCAACTTGGCTA+TGG + chr4_1:56079686-56079705 None:intergenic 40.0%
CTTCCATCAAGTGAAAACCT+TGG + chr4_1:56079921-56079940 None:intergenic 40.0%
CCCAAAAGATGACCTATACA+TGG + chr4_1:56079949-56079968 None:intergenic 40.0%
ATTAACTTTGCCACAACACC+AGG + chr4_1:56080086-56080105 None:intergenic 40.0%
!! TGGTGTTGTGGCAAAGTTAA+TGG - chr4_1:56080085-56080104 Msa0557630:CDS 40.0%
! GGTGTTGTGGCAAAGTTAAT+GGG - chr4_1:56080086-56080105 Msa0557630:CDS 40.0%
!! TGTGGCAAAGTTAATGGGTT+TGG - chr4_1:56080091-56080110 Msa0557630:CDS 40.0%
! CTTTTTCTACCTACTGACAC+TGG + chr4_1:56080125-56080144 None:intergenic 40.0%
!! GGATGAGTAGTGTTGATTGT+AGG - chr4_1:56080162-56080181 Msa0557630:CDS 40.0%
TCCAAATCATGCCTCTCAAA+TGG + chr4_1:56080209-56080228 None:intergenic 40.0%
AAAACTAGCAATGGACATGC+AGG - chr4_1:56080232-56080251 Msa0557630:CDS 40.0%
AAACTAGCAATGGACATGCA+GGG - chr4_1:56080233-56080252 Msa0557630:CDS 40.0%
TTGGGAGCCAAGATGAAGAA+AGG - chr4_1:56079579-56079598 Msa0557630:CDS 45.0%
! TGCTGCTTGTGATGTCAACT+TGG + chr4_1:56079692-56079711 None:intergenic 45.0%
AGTTGACATCACAAGCAGCA+AGG - chr4_1:56079692-56079711 Msa0557630:CDS 45.0%
AAATGGAGGAAGAGATGGCA+AGG - chr4_1:56079796-56079815 Msa0557630:CDS 45.0%
! TGTTTTCCACCAACAGTTGC+TGG - chr4_1:56080038-56080057 Msa0557630:CDS 45.0%
! GTTTTCCACCAACAGTTGCT+GGG - chr4_1:56080039-56080058 Msa0557630:CDS 45.0%
! TTTTCCACCAACAGTTGCTG+GGG - chr4_1:56080040-56080059 Msa0557630:CDS 45.0%
!! AACGTGGTTTGGTGTAAACC+TGG - chr4_1:56080065-56080084 Msa0557630:CDS 45.0%
! TTGGTGTAAACCTGGTGTTG+TGG - chr4_1:56080073-56080092 Msa0557630:CDS 45.0%
GAAGCTATTCCAGTGTCAGT+AGG - chr4_1:56080113-56080132 Msa0557630:CDS 45.0%
TAAGAAGGAGGCCATTTGAG+AGG - chr4_1:56080195-56080214 Msa0557630:CDS 45.0%
! GCCATTTGAGAGGCATGATT+TGG - chr4_1:56080205-56080224 Msa0557630:CDS 45.0%
! ACCGGTTTCTCTAGAAGCTA+TGG - chr4_1:56080328-56080347 Msa0557630:CDS 45.0%
! GCCATAGCTTCTAGAGAAAC+CGG + chr4_1:56080332-56080351 None:intergenic 45.0%
! GTTTCTCTAGAAGCTATGGC+AGG - chr4_1:56080332-56080351 Msa0557630:CDS 45.0%
TTGGGAGCCAAGATGAAGAA+AGG - chr4_1:56079579-56079598 Msa0557630:CDS 45.0%
! TGCTGCTTGTGATGTCAACT+TGG + chr4_1:56079692-56079711 None:intergenic 45.0%
AGTTGACATCACAAGCAGCA+AGG - chr4_1:56079692-56079711 Msa0557630:CDS 45.0%
AAATGGAGGAAGAGATGGCA+AGG - chr4_1:56079796-56079815 Msa0557630:CDS 45.0%
! TGTTTTCCACCAACAGTTGC+TGG - chr4_1:56080038-56080057 Msa0557630:CDS 45.0%
! GTTTTCCACCAACAGTTGCT+GGG - chr4_1:56080039-56080058 Msa0557630:CDS 45.0%
! TTTTCCACCAACAGTTGCTG+GGG - chr4_1:56080040-56080059 Msa0557630:CDS 45.0%
!! AACGTGGTTTGGTGTAAACC+TGG - chr4_1:56080065-56080084 Msa0557630:CDS 45.0%
! TTGGTGTAAACCTGGTGTTG+TGG - chr4_1:56080073-56080092 Msa0557630:CDS 45.0%
GAAGCTATTCCAGTGTCAGT+AGG - chr4_1:56080113-56080132 Msa0557630:CDS 45.0%
TAAGAAGGAGGCCATTTGAG+AGG - chr4_1:56080195-56080214 Msa0557630:CDS 45.0%
! GCCATTTGAGAGGCATGATT+TGG - chr4_1:56080205-56080224 Msa0557630:CDS 45.0%
! ACCGGTTTCTCTAGAAGCTA+TGG - chr4_1:56080328-56080347 Msa0557630:CDS 45.0%
! GCCATAGCTTCTAGAGAAAC+CGG + chr4_1:56080332-56080351 None:intergenic 45.0%
! GTTTCTCTAGAAGCTATGGC+AGG - chr4_1:56080332-56080351 Msa0557630:CDS 45.0%
TGGCTCCCAAAGAGTTCTTG+AGG + chr4_1:56079569-56079588 None:intergenic 50.0%
! TCTCTAGAAGCTATGGCAGG+AGG - chr4_1:56080335-56080354 Msa0557630:CDS 50.0%
GTCCTAGTAGTTGGCAACCA+AGG - chr4_1:56080357-56080376 Msa0557630:CDS 50.0%
CTCCTTGGTTGCCAACTACT+AGG + chr4_1:56080362-56080381 None:intergenic 50.0%
TGGCTCCCAAAGAGTTCTTG+AGG + chr4_1:56079569-56079588 None:intergenic 50.0%
! TCTCTAGAAGCTATGGCAGG+AGG - chr4_1:56080335-56080354 Msa0557630:CDS 50.0%
GTCCTAGTAGTTGGCAACCA+AGG - chr4_1:56080357-56080376 Msa0557630:CDS 50.0%
CTCCTTGGTTGCCAACTACT+AGG + chr4_1:56080362-56080381 None:intergenic 50.0%
TTCTCCCCAGCAACTGTTGG+TGG + chr4_1:56080047-56080066 None:intergenic 55.0%
ACGTTCTCCCCAGCAACTGT+TGG + chr4_1:56080050-56080069 None:intergenic 55.0%
AACAGTTGCTGGGGAGAACG+TGG - chr4_1:56080049-56080068 Msa0557630:CDS 55.0%
TTGCTGGGGAGAACGTGGTT+TGG - chr4_1:56080054-56080073 Msa0557630:CDS 55.0%
TGGCAGGAGGTCCTAGTAGT+TGG - chr4_1:56080348-56080367 Msa0557630:CDS 55.0%
TTCTCCCCAGCAACTGTTGG+TGG + chr4_1:56080047-56080066 None:intergenic 55.0%
ACGTTCTCCCCAGCAACTGT+TGG + chr4_1:56080050-56080069 None:intergenic 55.0%
AACAGTTGCTGGGGAGAACG+TGG - chr4_1:56080049-56080068 Msa0557630:CDS 55.0%
TTGCTGGGGAGAACGTGGTT+TGG - chr4_1:56080054-56080073 Msa0557630:CDS 55.0%
TGGCAGGAGGTCCTAGTAGT+TGG - chr4_1:56080348-56080367 Msa0557630:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 56079552 56080391 56079552 ID=Msa0557630;Name=Msa0557630
chr4_1 mRNA 56079552 56080391 56079552 ID=Msa0557630-mRNA-1;Parent=Msa0557630;Name=Msa0557630-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|279
chr4_1 exon 56079552 56080391 56079552 ID=Msa0557630-mRNA-1:exon:16776;Parent=Msa0557630-mRNA-1
chr4_1 CDS 56079552 56080391 56079552 ID=Msa0557630-mRNA-1:cds;Parent=Msa0557630-mRNA-1
Gene Sequence

>Msa0557630

ATGCCATTCTTTCTCCTCAAGAACTCTTTGGGAGCCAAGATGAAGAAAGGCATAAGAACTTTCTGCAACACTGATGTGTCAACCTCAACTCTAAACCAACAAAATAGTACTATTGGCAATGGCATTGGCAACCATAGCCAAGTTGACATCACAAGCAGCAAGGTAAGCTCCCCTTTTTTGCAATGTGACAACTCAAATTCAAAGCAAAGCACACCAACATTAGAAGATCTTATACTACAATTAGAAATGGAGGAAGAGATGGCAAGGAAAGAAAAACTCAATGAATATAGTGGAATAAGGGGAAGGATGTCATGTGTTAACAACTCTGACATATTAAGATCTGCAAGGAATGCTTTGAATCAATATCCAAGGTTTTCACTTGATGGAAGAGATTCCATGTATAGGTCATCTTTTGGGACTATAGAAGGAAGAAGATCAGTTTGTAGTGAGATAAGTTTAGAACCAAAGCTTGATGAAAAGGTTATGTGTTTTCCACCAACAGTTGCTGGGGAGAACGTGGTTTGGTGTAAACCTGGTGTTGTGGCAAAGTTAATGGGTTTGGAAGCTATTCCAGTGTCAGTAGGTAGAAAAAGATCTGACAAAAAAGAGAGGATGAGTAGTGTTGATTGTAGGAGACAAAATATAAGAAGGAGGCCATTTGAGAGGCATGATTTGGAGAGAAAACTAGCAATGGACATGCAGGGTTATCGTGATCACATTGTTAGAAGAAGAAATAGGTCTGGTTTTTGCTCTAAAAATGGATATTGTATTATGAAACCGGTTTCTCTAGAAGCTATGGCAGGAGGTCCTAGTAGTTGGCAACCAAGGAGATATGTTTAG

Protein sequence

>Msa0557630

MPFFLLKNSLGAKMKKGIRTFCNTDVSTSTLNQQNSTIGNGIGNHSQVDITSSKVSSPFLQCDNSNSKQSTPTLEDLILQLEMEEEMARKEKLNEYSGIRGRMSCVNNSDILRSARNALNQYPRFSLDGRDSMYRSSFGTIEGRRSVCSEISLEPKLDEKVMCFPPTVAGENVVWCKPGVVAKLMGLEAIPVSVGRKRSDKKERMSSVDCRRQNIRRRPFERHDLERKLAMDMQGYRDHIVRRRNRSGFCSKNGYCIMKPVSLEAMAGGPSSWQPRRYV*