Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1007230 | XP_003621252.1 | 90.099 | 202 | 18 | 1 | 1 | 200 | 1 | 202 | 6.35e-116 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1007230 | sp|Q93Z27|CML46_ARATH | 43.602 | 211 | 101 | 6 | 1 | 200 | 1 | 204 | 3.65e-45 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1007230 | G7L207 | 90.099 | 202 | 18 | 1 | 1 | 200 | 1 | 202 | 3.03e-116 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa1007230 | 0.809788 | 1.591066e-50 | -8.615850e-47 |
| Msa0018070 | Msa1007230 | 0.812737 | 3.647791e-51 | -8.615850e-47 |
| Msa0061500 | Msa1007230 | 0.805166 | 1.522145e-49 | -8.615850e-47 |
| Msa0079070 | Msa1007230 | 0.801994 | 6.922393e-49 | -8.615850e-47 |
| Msa0090570 | Msa1007230 | 0.807573 | 4.731726e-50 | -8.615850e-47 |
| Msa0092410 | Msa1007230 | 0.819482 | 1.134849e-52 | -8.615850e-47 |
| Msa0103250 | Msa1007230 | 0.808462 | 3.060570e-50 | -8.615850e-47 |
| Msa0615010 | Msa1007230 | 0.828044 | 1.118761e-54 | -8.615850e-47 |
| Msa0622170 | Msa1007230 | -0.805675 | 1.190313e-49 | -8.615850e-47 |
| Msa0624960 | Msa1007230 | 0.805306 | 1.422556e-49 | -8.615850e-47 |
| Msa0626850 | Msa1007230 | 0.810949 | 8.938022e-51 | -8.615850e-47 |
| Msa0648860 | Msa1007230 | 0.800031 | 1.743676e-48 | -8.615850e-47 |
| Msa0657870 | Msa1007230 | 0.822931 | 1.818688e-53 | -8.615850e-47 |
| Msa0661650 | Msa1007230 | 0.806755 | 7.050349e-50 | -8.615850e-47 |
| Msa0664970 | Msa1007230 | 0.812931 | 3.307222e-51 | -8.615850e-47 |
| Msa0667340 | Msa1007230 | 0.802566 | 5.279014e-49 | -8.615850e-47 |
| Msa0667740 | Msa1007230 | 0.819280 | 1.261526e-52 | -8.615850e-47 |
| Msa0672450 | Msa1007230 | 0.804611 | 1.988426e-49 | -8.615850e-47 |
| Msa0672480 | Msa1007230 | 0.805863 | 1.086823e-49 | -8.615850e-47 |
| Msa0679290 | Msa1007230 | -0.801168 | 1.022656e-48 | -8.615850e-47 |
| Msa0689780 | Msa1007230 | 0.821231 | 4.506409e-53 | -8.615850e-47 |
| Msa0708310 | Msa1007230 | 0.842726 | 2.168149e-58 | -8.615850e-47 |
| Msa0711150 | Msa1007230 | 0.836781 | 7.653380e-57 | -8.615850e-47 |
| Msa0715410 | Msa1007230 | 0.800452 | 1.432031e-48 | -8.615850e-47 |
| Msa0749440 | Msa1007230 | 0.801113 | 1.049519e-48 | -8.615850e-47 |
| Msa0751850 | Msa1007230 | 0.824096 | 9.714768e-54 | -8.615850e-47 |
| Msa0825870 | Msa1007230 | 0.822542 | 2.240849e-53 | -8.615850e-47 |
| Msa0830230 | Msa1007230 | 0.802719 | 4.910455e-49 | -8.615850e-47 |
| Msa0831850 | Msa1007230 | 0.805598 | 1.235412e-49 | -8.615850e-47 |
| Msa0125650 | Msa1007230 | 0.804357 | 2.246172e-49 | -8.615850e-47 |
| Msa0129190 | Msa1007230 | -0.802262 | 6.099173e-49 | -8.615850e-47 |
| Msa0130720 | Msa1007230 | 0.800201 | 1.610461e-48 | -8.615850e-47 |
| Msa0138020 | Msa1007230 | 0.805569 | 1.252957e-49 | -8.615850e-47 |
| Msa0140500 | Msa1007230 | -0.811637 | 6.336154e-51 | -8.615850e-47 |
| Msa0150230 | Msa1007230 | 0.800948 | 1.134008e-48 | -8.615850e-47 |
| Msa0152560 | Msa1007230 | 0.811858 | 5.673490e-51 | -8.615850e-47 |
| Msa0178510 | Msa1007230 | 0.805003 | 1.646003e-49 | -8.615850e-47 |
| Msa0187830 | Msa1007230 | 0.834577 | 2.765681e-56 | -8.615850e-47 |
| Msa0190530 | Msa1007230 | 0.830857 | 2.318382e-55 | -8.615850e-47 |
| Msa0201570 | Msa1007230 | 0.817329 | 3.488529e-52 | -8.615850e-47 |
| Msa0204840 | Msa1007230 | 0.807884 | 4.064982e-50 | -8.615850e-47 |
| Msa0217700 | Msa1007230 | 0.809298 | 2.027618e-50 | -8.615850e-47 |
| Msa0369920 | Msa1007230 | 0.803941 | 2.741605e-49 | -8.615850e-47 |
| Msa0371950 | Msa1007230 | 0.800065 | 1.716643e-48 | -8.615850e-47 |
| Msa0381610 | Msa1007230 | -0.819938 | 8.926967e-53 | -8.615850e-47 |
| Msa0382370 | Msa1007230 | 0.802295 | 6.004033e-49 | -8.615850e-47 |
| Msa0417330 | Msa1007230 | 0.814713 | 1.339413e-51 | -8.615850e-47 |
| Msa0432160 | Msa1007230 | 0.809936 | 1.478894e-50 | -8.615850e-47 |
| Msa0432670 | Msa1007230 | 0.801108 | 1.051881e-48 | -8.615850e-47 |
| Msa0434180 | Msa1007230 | 0.808288 | 3.334189e-50 | -8.615850e-47 |
| Msa0455760 | Msa1007230 | 0.812740 | 3.641698e-51 | -8.615850e-47 |
| Msa0476680 | Msa1007230 | 0.814992 | 1.161457e-51 | -8.615850e-47 |
| Msa0980020 | Msa1007230 | 0.801194 | 1.009954e-48 | -8.615850e-47 |
| Msa0994910 | Msa1007230 | 0.812252 | 4.655068e-51 | -8.615850e-47 |
| Msa1000250 | Msa1007230 | 0.825678 | 4.111667e-54 | -8.615850e-47 |
| Msa1007230 | Msa1011090 | 0.809586 | 1.758942e-50 | -8.615850e-47 |
| Msa1007230 | Msa1025080 | 0.816314 | 5.895287e-52 | -8.615850e-47 |
| Msa1007230 | Msa1026940 | 0.805399 | 1.360463e-49 | -8.615850e-47 |
| Msa1007230 | Msa1036710 | -0.802627 | 5.128095e-49 | -8.615850e-47 |
| Msa1007230 | Msa1039710 | -0.812527 | 4.053987e-51 | -8.615850e-47 |
| Msa1007230 | Msa1063420 | 0.808837 | 2.545551e-50 | -8.615850e-47 |
| Msa1007230 | Msa1063690 | 0.805208 | 1.491250e-49 | -8.615850e-47 |
| Msa1007230 | Msa1064250 | 0.805669 | 1.194135e-49 | -8.615850e-47 |
| Msa1007230 | Msa1076960 | 0.842141 | 3.098817e-58 | -8.615850e-47 |
| Msa1007230 | Msa1100930 | 0.856359 | 3.394435e-62 | -8.615850e-47 |
| Msa1007230 | Msa1104090 | 0.815945 | 7.127449e-52 | -8.615850e-47 |
| Msa1007230 | Msa1107190 | 0.811302 | 7.491773e-51 | -8.615850e-47 |
| Msa1007230 | Msa1109090 | 0.814805 | 1.277865e-51 | -8.615850e-47 |
| Msa1007230 | Msa1111870 | 0.806813 | 6.856449e-50 | -8.615850e-47 |
| Msa1007230 | Msa1121490 | 0.800676 | 1.289113e-48 | -8.615850e-47 |
| Msa1007230 | Msa1122860 | 0.843621 | 1.251732e-58 | -8.615850e-47 |
| Msa1007230 | Msa1162780 | 0.810386 | 1.183033e-50 | -8.615850e-47 |
| Msa1007230 | Msa1163540 | 0.828901 | 6.947315e-55 | -8.615850e-47 |
| Msa1007230 | Msa1177780 | 0.815085 | 1.107247e-51 | -8.615850e-47 |
| Msa1007230 | Msa1180500 | 0.814397 | 1.573216e-51 | -8.615850e-47 |
| Msa1007230 | Msa1185110 | 0.816755 | 4.696690e-52 | -8.615850e-47 |
| Msa1007230 | Msa1186950 | -0.812536 | 4.035080e-51 | -8.615850e-47 |
| Msa1007230 | Msa1198770 | 0.813991 | 1.933725e-51 | -8.615850e-47 |
| Msa1007230 | Msa1200250 | 0.812754 | 3.615374e-51 | -8.615850e-47 |
| Msa1007230 | Msa1210110 | 0.836487 | 9.091760e-57 | -8.615850e-47 |
| Msa1007230 | Msa1218580 | 0.801390 | 9.211039e-49 | -8.615850e-47 |
| Msa1007230 | Msa1225100 | 0.856462 | 3.165596e-62 | -8.615850e-47 |
| Msa1007230 | Msa1231840 | 0.801679 | 8.034472e-49 | -8.615850e-47 |
| Msa1007230 | Msa1232740 | 0.800220 | 1.596065e-48 | -8.615850e-47 |
| Msa1007230 | Msa1236730 | 0.800917 | 1.150651e-48 | -8.615850e-47 |
| Msa1007230 | Msa1243870 | 0.812616 | 3.875933e-51 | -8.615850e-47 |
| Msa1007230 | Msa1246700 | 0.838017 | 3.690463e-57 | -8.615850e-47 |
| Msa1007230 | Msa1255720 | 0.800979 | 1.117914e-48 | -8.615850e-47 |
| Msa1007230 | Msa1270660 | 0.808790 | 2.604373e-50 | -8.615850e-47 |
| Msa1007230 | Msa1279480 | 0.808939 | 2.420885e-50 | -8.615850e-47 |
| Msa1007230 | Msa1280150 | 0.810333 | 1.214139e-50 | -8.615850e-47 |
| Msa1007230 | Msa1291830 | 0.804610 | 1.988758e-49 | -8.615850e-47 |
| Msa1007230 | Msa1292990 | 0.811993 | 5.301680e-51 | -8.615850e-47 |
| Msa1007230 | Msa1299560 | 0.812258 | 4.641132e-51 | -8.615850e-47 |
| Msa1007230 | Msa1299620 | 0.813441 | 2.555313e-51 | -8.615850e-47 |
| Msa1007230 | Msa1304890 | -0.808286 | 3.336778e-50 | -8.615850e-47 |
| Msa1007230 | Msa1305810 | 0.805600 | 1.234225e-49 | -8.615850e-47 |
| Msa1007230 | Msa1312520 | 0.819359 | 1.210785e-52 | -8.615850e-47 |
| Msa1007230 | Msa1313320 | 0.808468 | 3.051877e-50 | -8.615850e-47 |
| Msa1007230 | Msa1317130 | 0.800553 | 1.365687e-48 | -8.615850e-47 |
| Msa1007230 | Msa1329870 | 0.855538 | 5.898871e-62 | -8.615850e-47 |
| Msa1007230 | Msa1332050 | 0.804472 | 2.124952e-49 | -8.615850e-47 |
| Msa1007230 | Msa1343250 | 0.802029 | 6.810902e-49 | -8.615850e-47 |
| Msa1007230 | Msa1353890 | 0.823410 | 1.406052e-53 | -8.615850e-47 |
| Msa1007230 | Msa1355890 | 0.845075 | 5.090029e-59 | -8.615850e-47 |
| Msa1007230 | Msa1365270 | 0.838552 | 2.686985e-57 | -8.615850e-47 |
| Msa1007230 | Msa1371940 | 0.800312 | 1.529266e-48 | -8.615850e-47 |
| Msa1007230 | Msa1372150 | 0.803494 | 3.393947e-49 | -8.615850e-47 |
| Msa1007230 | Msa1376450 | 0.809561 | 1.780704e-50 | -8.615850e-47 |
| Msa1007230 | Msa1378040 | 0.816842 | 4.488866e-52 | -8.615850e-47 |
| Msa1007230 | Msa1380220 | 0.804402 | 2.197484e-49 | -8.615850e-47 |
| Msa1007230 | Msa1384280 | 0.800278 | 1.553484e-48 | -8.615850e-47 |
| Msa1007230 | Msa1391550 | 0.810812 | 9.567678e-51 | -8.615850e-47 |
| Msa1007230 | Msa1392910 | 0.804080 | 2.564600e-49 | -8.615850e-47 |
| Msa1007230 | Msa1394310 | 0.827239 | 1.745697e-54 | -8.615850e-47 |
| Msa1007230 | Msa1394380 | 0.805090 | 1.578705e-49 | -8.615850e-47 |
| Msa1007230 | Msa1405220 | 0.856875 | 2.393365e-62 | -8.615850e-47 |
| Msa1007230 | Msa1408340 | 0.812987 | 3.215569e-51 | -8.615850e-47 |
| Msa1007230 | Msa1420270 | 0.827374 | 1.621045e-54 | -8.615850e-47 |
| Msa1007230 | Msa1424630 | 0.829942 | 3.880581e-55 | -8.615850e-47 |
| Msa1007230 | Msa1430130 | 0.818241 | 2.172219e-52 | -8.615850e-47 |
| Msa1007230 | Msa1430550 | 0.810264 | 1.256573e-50 | -8.615850e-47 |
| Msa1007230 | Msa1436600 | 0.803194 | 3.916153e-49 | -8.615850e-47 |
| Msa1007230 | Msa1445390 | -0.809294 | 2.031863e-50 | -8.615850e-47 |
| Msa1007230 | Msa1449340 | -0.800813 | 1.208515e-48 | -8.615850e-47 |
| Msa1007230 | Msa1454570 | 0.822537 | 2.246123e-53 | -8.615850e-47 |
| Msa1007230 | Msa1457160 | 0.834316 | 3.216409e-56 | -8.615850e-47 |
| Msa1007230 | Msa1458340 | 0.803480 | 3.417609e-49 | -8.615850e-47 |
| Msa1007230 | Msa1460750 | 0.818181 | 2.241286e-52 | -8.615850e-47 |
| Msa1007230 | Msa1460800 | 0.801048 | 1.082024e-48 | -8.615850e-47 |
| Msa1007230 | Msa1461550 | 0.827621 | 1.413920e-54 | -8.615850e-47 |
| Msa1007230 | Msa1462360 | 0.821657 | 3.593300e-53 | -8.615850e-47 |
| Msa0244140 | Msa1007230 | 0.817223 | 3.686546e-52 | -8.615850e-47 |
| Msa0244190 | Msa1007230 | 0.817434 | 3.303973e-52 | -8.615850e-47 |
| Msa0264830 | Msa1007230 | 0.816380 | 5.698948e-52 | -8.615850e-47 |
| Msa0269560 | Msa1007230 | 0.814512 | 1.483412e-51 | -8.615850e-47 |
| Msa0269810 | Msa1007230 | 0.818310 | 2.095379e-52 | -8.615850e-47 |
| Msa0278580 | Msa1007230 | 0.800906 | 1.157017e-48 | -8.615850e-47 |
| Msa0282720 | Msa1007230 | 0.845411 | 4.129339e-59 | -8.615850e-47 |
| Msa0296480 | Msa1007230 | 0.819049 | 1.424287e-52 | -8.615850e-47 |
| Msa0296820 | Msa1007230 | 0.822803 | 1.948507e-53 | -8.615850e-47 |
| Msa0305190 | Msa1007230 | 0.808949 | 2.408928e-50 | -8.615850e-47 |
| Msa0308460 | Msa1007230 | 0.811645 | 6.310951e-51 | -8.615850e-47 |
| Msa0319170 | Msa1007230 | 0.806481 | 8.053897e-50 | -8.615850e-47 |
| Msa0319290 | Msa1007230 | 0.807139 | 5.847833e-50 | -8.615850e-47 |
| Msa0340340 | Msa1007230 | 0.812981 | 3.225221e-51 | -8.615850e-47 |
| Msa0347750 | Msa1007230 | 0.828421 | 9.074364e-55 | -8.615850e-47 |
| Msa0357220 | Msa1007230 | 0.805949 | 1.042884e-49 | -8.615850e-47 |
| Msa0357830 | Msa1007230 | 0.807906 | 4.021410e-50 | -8.615850e-47 |
| Msa0357840 | Msa1007230 | 0.801632 | 8.217723e-49 | -8.615850e-47 |
| Msa0357870 | Msa1007230 | 0.807846 | 4.139644e-50 | -8.615850e-47 |
| Msa0363790 | Msa1007230 | 0.806441 | 8.212099e-50 | -8.615850e-47 |
| Msa0521010 | Msa1007230 | 0.818215 | 2.201768e-52 | -8.615850e-47 |
| Msa0526070 | Msa1007230 | -0.821341 | 4.251771e-53 | -8.615850e-47 |
| Msa0532930 | Msa1007230 | 0.809068 | 2.271576e-50 | -8.615850e-47 |
| Msa0545700 | Msa1007230 | 0.810867 | 9.308956e-51 | -8.615850e-47 |
| Msa0574600 | Msa1007230 | 0.816896 | 4.365520e-52 | -8.615850e-47 |
| Msa0587030 | Msa1007230 | 0.809607 | 1.740570e-50 | -8.615850e-47 |
| Msa0865330 | Msa1007230 | 0.810728 | 9.979415e-51 | -8.615850e-47 |
| Msa0870060 | Msa1007230 | 0.831798 | 1.360695e-55 | -8.615850e-47 |
| Msa0877710 | Msa1007230 | 0.805805 | 1.118136e-49 | -8.615850e-47 |
| Msa0880810 | Msa1007230 | 0.801754 | 7.756055e-49 | -8.615850e-47 |
| Msa0888260 | Msa1007230 | 0.800443 | 1.438066e-48 | -8.615850e-47 |
| Msa0894710 | Msa1007230 | 0.835257 | 1.864746e-56 | -8.615850e-47 |
| Msa0902830 | Msa1007230 | 0.815627 | 8.392231e-52 | -8.615850e-47 |
| Msa0914270 | Msa1007230 | 0.806697 | 7.254395e-50 | -8.615850e-47 |
| Msa0921420 | Msa1007230 | 0.806685 | 7.295702e-50 | -8.615850e-47 |
| Msa0927380 | Msa1007230 | 0.802147 | 6.440954e-49 | -8.615850e-47 |
| Msa0935770 | Msa1007230 | 0.834964 | 2.210468e-56 | -8.615850e-47 |
| Msa0939250 | Msa1007230 | 0.809637 | 1.715002e-50 | -8.615850e-47 |
| Msa0943190 | Msa1007230 | 0.856406 | 3.287895e-62 | -8.615850e-47 |
| Msa0947760 | Msa1007230 | 0.802936 | 4.427076e-49 | -8.615850e-47 |
| Msa0951400 | Msa1007230 | 0.804893 | 1.735715e-49 | -8.615850e-47 |
| Msa0960390 | Msa1007230 | 0.829375 | 5.331368e-55 | -8.615850e-47 |
| Msa0972810 | Msa1007230 | 0.811344 | 7.336169e-51 | -8.615850e-47 |
| Msa0973600 | Msa1007230 | 0.820663 | 6.088952e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1007230 | MtrunA17_Chr7g0217621 | 90.099 | 202 | 18 | 1 | 1 | 200 | 1 | 202 | 5.84e-120 | 338 |
| Msa1007230 | MtrunA17_Chr5g0408251 | 79.902 | 204 | 33 | 2 | 1 | 200 | 1 | 200 | 9.26e-109 | 310 |
| Msa1007230 | MtrunA17_Chr4g0071941 | 66.434 | 143 | 44 | 2 | 62 | 200 | 8 | 150 | 2.13e-52 | 165 |
| Msa1007230 | MtrunA17_Chr4g0042491 | 48.148 | 108 | 53 | 2 | 89 | 196 | 72 | 176 | 6.33e-21 | 85.5 |
| Msa1007230 | MtrunA17_Chr7g0217611 | 83.721 | 43 | 7 | 0 | 96 | 138 | 1 | 43 | 6.67e-17 | 71.2 |
| Msa1007230 | MtrunA17_Chr3g0139311 | 39.167 | 120 | 64 | 2 | 84 | 195 | 60 | 178 | 7.95e-13 | 63.9 |
| Msa1007230 | MtrunA17_Chr4g0064231 | 43.243 | 74 | 42 | 0 | 124 | 197 | 145 | 218 | 4.01e-12 | 62.8 |
| Msa1007230 | MtrunA17_Chr2g0329371 | 47.541 | 61 | 32 | 0 | 136 | 196 | 143 | 203 | 1.00e-11 | 61.6 |
| Msa1007230 | MtrunA17_Chr7g0245371 | 44.928 | 69 | 38 | 0 | 127 | 195 | 102 | 170 | 1.02e-11 | 60.8 |
| Msa1007230 | MtrunA17_Chr4g0033601 | 43.939 | 66 | 37 | 0 | 131 | 196 | 77 | 142 | 1.31e-11 | 60.1 |
| Msa1007230 | MtrunA17_Chr8g0392951 | 44.118 | 68 | 36 | 1 | 130 | 197 | 94 | 159 | 1.49e-11 | 60.5 |
| Msa1007230 | MtrunA17_Chr7g0256171 | 45.902 | 61 | 33 | 0 | 136 | 196 | 82 | 142 | 9.64e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1007230 | AT5G39670.1 | 43.602 | 211 | 101 | 6 | 1 | 200 | 1 | 204 | 3.71e-46 | 151 |
| Msa1007230 | AT3G29000.1 | 45.109 | 184 | 88 | 4 | 24 | 197 | 11 | 191 | 2.97e-40 | 136 |
| Msa1007230 | AT3G47480.1 | 54.545 | 66 | 29 | 1 | 131 | 196 | 115 | 179 | 4.00e-16 | 73.2 |
| Msa1007230 | AT4G20780.1 | 54.930 | 71 | 29 | 1 | 125 | 195 | 116 | 183 | 1.86e-15 | 71.6 |
| Msa1007230 | AT5G44460.1 | 31.098 | 164 | 94 | 3 | 39 | 197 | 27 | 176 | 1.30e-14 | 69.3 |
| Msa1007230 | AT2G43290.1 | 40.449 | 89 | 52 | 1 | 108 | 196 | 120 | 207 | 5.91e-14 | 68.2 |
| Msa1007230 | AT1G05990.1 | 46.154 | 65 | 35 | 0 | 133 | 197 | 80 | 144 | 1.56e-12 | 62.8 |
| Msa1007230 | AT4G03290.1 | 45.312 | 64 | 35 | 0 | 133 | 196 | 82 | 145 | 4.46e-12 | 62.0 |
| Msa1007230 | AT1G21550.1 | 37.838 | 111 | 62 | 2 | 85 | 191 | 41 | 148 | 4.59e-12 | 62.0 |
| Msa1007230 | AT3G07490.1 | 45.902 | 61 | 33 | 0 | 136 | 196 | 82 | 142 | 7.96e-12 | 61.2 |
| Msa1007230 | AT3G59440.1 | 25.758 | 198 | 106 | 6 | 25 | 197 | 7 | 188 | 1.48e-11 | 61.2 |
Find 23 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGAAGAGTTATGTGTATTT+TGG | 0.154565 | 7_1:+6662203 | Msa1007230:CDS |
| TGAAGCGGTGATGGCGAAAA+TGG | 0.258329 | 7_1:+6662020 | Msa1007230:CDS |
| GAGAAAGTGGAGAGATTAAG+AGG | 0.304916 | 7_1:+6661989 | Msa1007230:CDS |
| GAAAGCAACTCAACTTTGTT+TGG | 0.330887 | 7_1:+6661802 | Msa1007230:CDS |
| CTTCTCTGCCAACTTCGTTC+CGG | 0.355688 | 7_1:+6661898 | Msa1007230:CDS |
| TGATGAGAATGAGCCAAGTT+TGG | 0.401446 | 7_1:+6662113 | Msa1007230:CDS |
| ATCTTCACTTCCTCCAAACT+TGG | 0.413419 | 7_1:-6662126 | None:intergenic |
| TTCCGGTGACTTAGAAGTAA+AGG | 0.466313 | 7_1:+6661915 | Msa1007230:CDS |
| CGGAACGAAGTTGGCAGAGA+AGG | 0.482954 | 7_1:-6661897 | None:intergenic |
| TCCGGTGACTTAGAAGTAAA+GGG | 0.483748 | 7_1:+6661916 | Msa1007230:CDS |
| GAAGCGGTGATGGCGAAAAT+GGG | 0.492089 | 7_1:+6662021 | Msa1007230:CDS |
| AAGTTTGGAGGAAGTGAAGA+TGG | 0.496634 | 7_1:+6662128 | Msa1007230:CDS |
| TCCCTTTACTTCTAAGTCAC+CGG | 0.500276 | 7_1:-6661917 | None:intergenic |
| TGAGAATGAGCCAAGTTTGG+AGG | 0.510803 | 7_1:+6662116 | Msa1007230:CDS |
| GGATGAAGTTGAAGCGGTGA+TGG | 0.511527 | 7_1:+6662011 | Msa1007230:CDS |
| CTAAGTCACCGGAACGAAGT+TGG | 0.521372 | 7_1:-6661906 | None:intergenic |
| TCAAATGTAAGCGGAGAAAG+TGG | 0.530749 | 7_1:+6661976 | Msa1007230:CDS |
| AGATGGATTTATTGATGCAA+TGG | 0.533184 | 7_1:+6662176 | Msa1007230:CDS |
| CTGCAATAAGATAAACAAGT+TGG | 0.540643 | 7_1:-6661756 | None:intergenic |
| AGAAAGTGGAGAGATTAAGA+GGG | 0.546580 | 7_1:+6661990 | Msa1007230:CDS |
| TAAGAGGGATGAAGTTGAAG+CGG | 0.562793 | 7_1:+6662005 | Msa1007230:CDS |
| ACTTGTTTATCTTATTGCAG+AGG | 0.590641 | 7_1:+6661759 | Msa1007230:CDS |
| AGCAGAGACTCAAATGTAAG+CGG | 0.613770 | 7_1:+6661967 | Msa1007230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTGAATTTGTAAAAATTA+TGG | + | chr7_1:6662308-6662327 | Msa1007230:CDS | 15.0% |
| ! | GATGATCTTGAAGAAAAATA+TGG | + | chr7_1:6662066-6662085 | Msa1007230:CDS | 25.0% |
| ! | TGAAGAAAAATATGGTTCAA+AGG | + | chr7_1:6662074-6662093 | Msa1007230:CDS | 25.0% |
| !!! | TATGTGTATTTTGGGATTTA+AGG | + | chr7_1:6662212-6662231 | Msa1007230:CDS | 25.0% |
| !! | AAGATGATCAAGAATTTTGA+TGG | + | chr7_1:6662261-6662280 | Msa1007230:CDS | 25.0% |
| !!! | AATTTTGATGGAAATCAAGA+TGG | + | chr7_1:6662273-6662292 | Msa1007230:CDS | 25.0% |
| CTGCAATAAGATAAACAAGT+TGG | - | chr7_1:6661759-6661778 | None:intergenic | 30.0% | |
| ACTTGTTTATCTTATTGCAG+AGG | + | chr7_1:6661759-6661778 | Msa1007230:CDS | 30.0% | |
| ! | ATAAGCTTTTCTCGAGTTTT+TGG | + | chr7_1:6661869-6661888 | Msa1007230:CDS | 30.0% |
| ! | GTTTTTGATGAGAACAAAGA+TGG | + | chr7_1:6662159-6662178 | Msa1007230:CDS | 30.0% |
| ! | AGATGGATTTATTGATGCAA+TGG | + | chr7_1:6662176-6662195 | Msa1007230:CDS | 30.0% |
| ! | CGAAGAGTTATGTGTATTTT+GGG | + | chr7_1:6662204-6662223 | Msa1007230:CDS | 30.0% |
| !!! | TGTATTTTGGGATTTAAGGA+AGG | + | chr7_1:6662216-6662235 | Msa1007230:CDS | 30.0% |
| GAAAGCAACTCAACTTTGTT+TGG | + | chr7_1:6661802-6661821 | Msa1007230:CDS | 35.0% | |
| AGAAAGTGGAGAGATTAAGA+GGG | + | chr7_1:6661990-6662009 | Msa1007230:CDS | 35.0% | |
| ! | GCGAAGAGTTATGTGTATTT+TGG | + | chr7_1:6662203-6662222 | Msa1007230:CDS | 35.0% |
| TTCCGGTGACTTAGAAGTAA+AGG | + | chr7_1:6661915-6661934 | Msa1007230:CDS | 40.0% | |
| TCCGGTGACTTAGAAGTAAA+GGG | + | chr7_1:6661916-6661935 | Msa1007230:CDS | 40.0% | |
| TCCCTTTACTTCTAAGTCAC+CGG | - | chr7_1:6661920-6661939 | None:intergenic | 40.0% | |
| AGCAGAGACTCAAATGTAAG+CGG | + | chr7_1:6661967-6661986 | Msa1007230:CDS | 40.0% | |
| TCAAATGTAAGCGGAGAAAG+TGG | + | chr7_1:6661976-6661995 | Msa1007230:CDS | 40.0% | |
| GAGAAAGTGGAGAGATTAAG+AGG | + | chr7_1:6661989-6662008 | Msa1007230:CDS | 40.0% | |
| TAAGAGGGATGAAGTTGAAG+CGG | + | chr7_1:6662005-6662024 | Msa1007230:CDS | 40.0% | |
| TGATGAGAATGAGCCAAGTT+TGG | + | chr7_1:6662113-6662132 | Msa1007230:CDS | 40.0% | |
| ATCTTCACTTCCTCCAAACT+TGG | - | chr7_1:6662129-6662148 | None:intergenic | 40.0% | |
| AAGTTTGGAGGAAGTGAAGA+TGG | + | chr7_1:6662128-6662147 | Msa1007230:CDS | 40.0% | |
| TGAGAATGAGCCAAGTTTGG+AGG | + | chr7_1:6662116-6662135 | Msa1007230:CDS | 45.0% | |
| CTTCTCTGCCAACTTCGTTC+CGG | + | chr7_1:6661898-6661917 | Msa1007230:CDS | 50.0% | |
| CTAAGTCACCGGAACGAAGT+TGG | - | chr7_1:6661909-6661928 | None:intergenic | 50.0% | |
| GGATGAAGTTGAAGCGGTGA+TGG | + | chr7_1:6662011-6662030 | Msa1007230:CDS | 50.0% | |
| ! | TGAAGCGGTGATGGCGAAAA+TGG | + | chr7_1:6662020-6662039 | Msa1007230:CDS | 50.0% |
| ! | GAAGCGGTGATGGCGAAAAT+GGG | + | chr7_1:6662021-6662040 | Msa1007230:CDS | 50.0% |
| CGGAACGAAGTTGGCAGAGA+AGG | - | chr7_1:6661900-6661919 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 6661745 | 6662347 | 6661745 | ID=Msa1007230;Name=Msa1007230 |
| chr7_1 | mRNA | 6661745 | 6662347 | 6661745 | ID=Msa1007230-mRNA-1;Parent=Msa1007230;Name=Msa1007230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|200 |
| chr7_1 | exon | 6661745 | 6662347 | 6661745 | ID=Msa1007230-mRNA-1:exon:1958;Parent=Msa1007230-mRNA-1 |
| chr7_1 | CDS | 6661745 | 6662347 | 6661745 | ID=Msa1007230-mRNA-1:cds;Parent=Msa1007230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
