AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0504730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504730 MtrunA17_Chr3g0105401 99.306 288 2 0 1 288 1 288 0.0 590
Msa0504730 MtrunA17_Chr3g0120861 65.789 266 90 1 23 288 33 297 1.75e-127 367
Msa0504730 MtrunA17_Chr5g0438631 61.246 289 110 2 1 288 1 288 1.00e-126 365
Msa0504730 MtrunA17_Chr5g0438641 61.458 288 105 3 1 288 10 291 4.86e-125 361
Msa0504730 MtrunA17_Chr5g0438621 58.681 288 118 1 1 288 3 289 3.28e-124 358
Msa0504730 MtrunA17_Chr8g0341001 42.123 292 164 3 1 288 1 291 5.33e-75 233
Msa0504730 MtrunA17_Chr1g0156921 40.221 271 162 0 18 288 32 302 1.25e-73 230
Msa0504730 MtrunA17_Chr1g0156931 44.106 263 145 2 26 288 39 299 1.04e-72 228
Msa0504730 MtrunA17_Chr1g0156901 39.236 288 174 1 1 288 23 309 1.79e-72 228
Msa0504730 MtrunA17_Chr8g0371491 40.138 289 166 3 6 288 8 295 1.98e-71 224
Msa0504730 MtrunA17_Chr5g0405821 42.561 289 153 6 9 288 20 304 1.29e-70 223
Msa0504730 MtrunA17_Chr2g0330781 43.233 266 144 4 26 288 29 290 1.30e-70 222
Msa0504730 MtrunA17_Chr1g0156891 40.741 297 165 4 1 288 9 303 1.79e-70 222
Msa0504730 MtrunA17_Chr5g0432101 40.426 282 156 4 14 284 9 289 1.59e-69 220
Msa0504730 MtrunA17_Chr4g0046151 40.411 292 164 5 5 288 14 303 2.25e-69 219
Msa0504730 MtrunA17_Chr3g0142921 43.182 264 146 4 27 288 35 296 2.34e-68 216
Msa0504730 MtrunA17_Chr1g0156911 36.842 285 179 1 4 288 13 296 8.46e-67 213
Msa0504730 MtrunA17_Chr8g0371471 40.458 262 155 1 27 288 40 300 4.11e-66 211
Msa0504730 MtrunA17_Chr2g0283191 42.336 274 139 6 1 263 13 278 1.10e-65 210
Msa0504730 MtrunA17_Chr5g0405831 37.543 293 175 4 1 288 14 303 2.39e-65 209
Msa0504730 MtrunA17_Chr3g0142941 39.163 263 159 1 26 288 45 306 1.30e-64 207
Msa0504730 MtrunA17_Chr8g0371481 39.924 263 156 2 27 288 40 301 1.47e-64 207
Msa0504730 MtrunA17_Chr2g0320671 41.573 267 147 4 26 288 28 289 1.38e-61 199
Msa0504730 MtrunA17_Chr4g0027521 41.727 278 156 4 14 288 13 287 2.71e-61 198
Msa0504730 MtrunA17_Chr1g0157001 36.502 263 162 3 33 294 41 299 3.82e-58 191
Msa0504730 MtrunA17_Chr7g0275011 35.473 296 181 7 1 288 1 294 3.26e-54 180
Msa0504730 MtrunA17_Chr5g0437421 36.162 271 164 3 25 288 29 297 6.57e-54 179
Msa0504730 MtrunA17_Chr1g0189901 34.982 283 180 4 8 288 11 291 7.63e-54 179
Msa0504730 MtrunA17_Chr1g0189931 38.023 263 159 4 28 288 32 292 1.36e-53 179
Msa0504730 MtrunA17_Chr7g0275021 34.483 290 184 5 2 288 8 294 7.95e-53 177
Msa0504730 MtrunA17_Chr1g0182811 35.154 293 177 7 4 288 8 295 1.22e-52 176
Msa0504730 MtrunA17_Chr7g0275001 37.262 263 162 3 28 288 25 286 3.30e-51 172
Msa0504730 MtrunA17_Chr6g0457921 37.405 262 159 5 30 288 31 290 1.27e-50 171
Msa0504730 MtrunA17_Chr7g0274991 35.741 263 165 4 28 288 33 293 4.75e-50 169
Msa0504730 MtrunA17_Chr2g0301641 36.271 295 172 8 4 288 12 300 4.37e-49 167
Msa0504730 MtrunA17_Chr4g0008851 35.959 292 178 7 3 288 6 294 6.84e-49 166
Msa0504730 MtrunA17_Chr5g0434621 35.769 260 162 4 31 288 28 284 4.84e-48 164
Msa0504730 MtrunA17_Chr1g0189891 38.976 254 148 6 28 276 29 280 5.56e-48 164
Msa0504730 MtrunA17_Chr2g0294311 32.765 293 184 5 6 288 11 300 7.75e-47 161
Msa0504730 MtrunA17_Chr4g0068441 34.615 286 178 6 7 288 15 295 1.70e-46 160
Msa0504730 MtrunA17_Chr8g0374101 30.690 290 193 5 6 288 15 303 2.57e-46 160
Msa0504730 MtrunA17_Chr8g0380031 36.122 263 161 6 3 263 61 318 3.72e-46 160
Msa0504730 MtrunA17_Chr5g0396511 37.121 264 154 6 31 288 49 306 9.67e-46 159
Msa0504730 MtrunA17_Chr2g0294301 35.125 279 173 5 14 288 21 295 1.69e-45 157
Msa0504730 MtrunA17_Chr3g0131321 34.602 289 178 6 7 288 13 297 2.69e-45 157
Msa0504730 MtrunA17_Chr3g0092131 34.981 263 161 6 31 288 26 283 3.64e-45 156
Msa0504730 MtrunA17_Chr3g0086641 36.466 266 164 4 25 288 35 297 4.03e-45 157
Msa0504730 MtrunA17_Chr4g0017431 33.681 288 179 6 6 287 9 290 4.44e-45 156
Msa0504730 MtrunA17_Chr3g0077571 32.180 289 189 5 1 288 3 285 2.15e-43 152
Msa0504730 MtrunA17_Chr2g0285061 32.759 290 189 5 2 288 6 292 2.31e-43 152
Msa0504730 MtrunA17_Chr4g0060811 35.249 261 163 5 31 288 30 287 2.62e-43 152
Msa0504730 MtrunA17_Chr2g0284991 37.023 262 156 7 4 261 9 265 1.11e-42 150
Msa0504730 MtrunA17_Chr2g0284921 37.344 241 142 6 25 260 31 267 1.84e-41 147
Msa0504730 MtrunA17_Chr8g0380041 33.569 283 181 5 9 288 12 290 2.95e-41 146
Msa0504730 MtrunA17_Chr3g0085231 32.770 296 174 8 5 288 8 290 3.00e-41 146
Msa0504730 MtrunA17_Chr7g0215961 30.104 289 182 7 4 288 8 280 1.44e-40 144
Msa0504730 MtrunA17_Chr2g0284951 37.023 262 156 7 4 261 9 265 1.52e-40 144
Msa0504730 MtrunA17_Chr5g0420811 32.404 287 179 6 5 288 10 284 1.78e-39 141
Msa0504730 MtrunA17_Chr8g0344941 34.601 263 164 6 28 288 41 297 3.17e-39 141
Msa0504730 MtrunA17_Chr8g0370981 32.095 296 181 7 4 288 19 305 1.61e-38 140
Msa0504730 MtrunA17_Chr2g0285001 34.815 270 163 8 1 261 1 266 6.14e-38 138
Msa0504730 MtrunA17_Chr5g0444401 32.302 291 183 7 6 288 6 290 9.94e-38 137
Msa0504730 MtrunA17_Chr8g0349341 32.959 267 158 8 28 288 37 288 1.30e-37 137
Msa0504730 MtrunA17_Chr7g0229591 40.678 177 104 1 26 202 28 203 2.01e-37 132
Msa0504730 MtrunA17_Chr3g0099151 34.615 260 153 8 25 273 84 337 1.74e-36 135
Msa0504730 MtrunA17_Chr8g0349301 31.818 264 164 8 28 288 37 287 2.36e-36 132
Msa0504730 MtrunA17_Chr3g0099161 34.420 276 159 10 25 288 89 354 2.95e-36 134
Msa0504730 MtrunA17_Chr3g0085881 35.983 239 142 6 25 260 30 260 6.25e-35 129
Msa0504730 MtrunA17_Chr8g0349321 31.818 264 165 8 28 288 37 288 2.86e-34 128
Msa0504730 MtrunA17_Chr8g0370951 29.333 300 189 9 1 284 1 293 3.16e-34 128
Msa0504730 MtrunA17_Chr8g0344931 31.561 301 183 9 1 288 4 294 1.10e-33 126
Msa0504730 MtrunA17_Chr2g0284941 32.669 251 155 7 1 243 1 245 2.11e-32 122
Msa0504730 MtrunA17_Chr3g0099231 29.293 297 193 8 1 288 1 289 5.55e-32 122
Msa0504730 MtrunA17_Chr3g0077581 34.008 247 143 10 25 260 33 270 9.86e-32 121
Msa0504730 MtrunA17_Chr4g0027571 40.741 162 91 3 131 290 3 161 2.37e-28 108
Msa0504730 MtrunA17_Chr6g0469511 46.087 115 62 0 26 140 28 142 1.72e-26 101
Msa0504730 MtrunA17_Chr6g0463261 40.164 122 72 1 81 202 4 124 3.92e-25 97.4
Msa0504730 MtrunA17_Chr4g0027561 37.500 120 74 1 1 120 4 122 2.66e-21 87.8
Msa0504730 MtrunA17_Chr1g0160101 27.687 307 175 12 9 288 20 306 3.01e-21 92.8
Msa0504730 MtrunA17_Chr8g0381581 26.045 311 191 11 1 288 11 305 4.49e-21 92.4
Msa0504730 MtrunA17_Chr6g0455661 42.963 135 69 4 4 134 7 137 7.02e-21 92.4
Msa0504730 MtrunA17_Chr6g0455661 29.630 162 99 6 133 288 250 402 1.86e-14 73.6
Msa0504730 MtrunA17_Chr7g0254461 28.846 312 182 14 1 288 14 309 8.94e-21 91.7
Msa0504730 MtrunA17_Chr1g0160011 30.072 276 168 10 27 288 39 303 1.39e-20 90.9
Msa0504730 MtrunA17_Chr1g0159991 30.000 280 163 12 27 288 35 299 4.51e-20 89.4
Msa0504730 MtrunA17_Chr1g0160031 28.873 284 161 12 27 288 38 302 4.54e-20 89.4
Msa0504730 MtrunA17_Chr1g0159981 27.243 301 194 10 2 288 20 309 1.17e-19 88.2
Msa0504730 MtrunA17_Chr2g0321991 48.352 91 45 2 25 114 30 119 1.25e-19 82.8
Msa0504730 MtrunA17_Chr1g0159971 28.114 281 165 10 28 288 47 310 1.52e-19 88.2
Msa0504730 MtrunA17_Chr1g0178941 30.000 270 151 10 29 285 41 285 2.58e-19 87.0
Msa0504730 MtrunA17_Chr7g0271551 26.619 278 174 10 23 288 31 290 1.59e-18 84.7
Msa0504730 MtrunA17_Chr6g0450701 28.904 301 165 14 1 270 4 286 2.15e-18 84.7
Msa0504730 MtrunA17_Chr1g0189921 48.387 93 47 1 28 120 31 122 2.93e-18 80.1
Msa0504730 MtrunA17_Chr6g0450721 27.402 281 171 9 1 263 4 269 3.48e-18 84.0
Msa0504730 MtrunA17_Chr1g0198381 28.346 254 160 7 29 282 3 234 5.50e-18 82.8
Msa0504730 MtrunA17_Chr7g0266061 30.741 270 159 11 22 285 36 283 9.88e-18 82.4
Msa0504730 MtrunA17_Chr6g0450731 26.923 286 164 12 1 263 4 267 2.37e-17 81.3
Msa0504730 MtrunA17_Chr1g0198351 26.667 255 164 8 29 283 44 275 7.32e-17 80.1
Msa0504730 MtrunA17_Chr2g0317271 28.819 288 174 10 18 288 20 293 7.85e-17 79.7
Msa0504730 MtrunA17_Chr6g0467721 79.167 48 10 0 238 285 149 196 8.13e-17 77.8
Msa0504730 MtrunA17_Chr0c01g0489581 28.819 288 174 10 18 288 20 293 8.31e-17 79.7
Msa0504730 MtrunA17_Chr7g0275291 25.166 302 196 9 3 288 6 293 1.04e-16 79.7
Msa0504730 MtrunA17_Chr8g0370971 41.026 117 64 2 15 126 24 140 1.65e-16 75.5
Msa0504730 MtrunA17_Chr8g0370961 26.946 167 116 2 122 288 11 171 1.86e-16 77.4
Msa0504730 MtrunA17_Chr3g0112821 29.474 285 174 12 20 288 20 293 1.89e-16 79.0
Msa0504730 MtrunA17_Chr0c01g0489571 28.819 288 174 10 18 288 20 293 2.32e-16 78.6
Msa0504730 MtrunA17_Chr6g0469521 43.478 92 48 2 201 290 29 118 4.02e-16 74.3
Msa0504730 MtrunA17_Chr3g0096551 27.103 321 188 12 2 296 1 301 8.02e-16 77.0
Msa0504730 MtrunA17_Chr7g0226941 28.409 264 154 11 21 263 26 275 8.13e-16 77.0
Msa0504730 MtrunA17_Chr3g0093031 28.571 301 193 12 2 288 1 293 8.46e-16 77.0
Msa0504730 MtrunA17_Chr2g0283481 26.578 301 189 12 12 288 25 317 8.86e-16 77.0
Msa0504730 MtrunA17_Chr7g0229581 46.067 89 44 2 204 290 8 94 1.35e-15 73.2
Msa0504730 MtrunA17_Chr2g0308201 50.000 76 37 1 6 81 13 87 1.62e-15 70.9
Msa0504730 MtrunA17_Chr7g0226911 24.917 301 171 13 21 288 28 306 2.38e-15 75.9
Msa0504730 MtrunA17_Chr2g0283511 27.273 275 173 11 33 288 36 302 4.98e-15 74.7
Msa0504730 MtrunA17_Chr6g0459921 31.288 163 95 7 133 288 139 291 2.97e-14 72.4
Msa0504730 MtrunA17_Chr8g0347751 25.694 288 172 12 28 288 36 308 5.31e-14 71.6
Msa0504730 MtrunA17_Chr1g0178931 27.715 267 156 10 29 285 38 277 5.35e-14 71.6
Msa0504730 MtrunA17_Chr2g0283501 28.662 314 165 14 8 288 12 299 8.27e-14 71.2
Msa0504730 MtrunA17_Chr2g0283531 28.522 291 173 13 20 288 21 298 1.00e-13 70.9
Msa0504730 MtrunA17_Chr2g0301541 25.161 310 192 12 1 288 7 298 1.57e-13 70.1
Msa0504730 MtrunA17_Chr7g0226931 25.000 300 169 13 28 288 38 320 5.91e-13 68.6
Msa0504730 MtrunA17_Chr4g0018561 52.830 53 25 0 26 78 28 80 7.33e-13 63.9
Msa0504730 MtrunA17_Chr1g0198391 27.875 287 149 11 21 281 29 283 1.56e-12 67.4
Msa0504730 MtrunA17_Chr3g0112691 28.247 308 183 14 2 288 1 291 2.92e-12 66.6
Msa0504730 MtrunA17_Chr5g0440501 23.030 165 121 1 130 288 13 177 3.38e-12 65.5
Msa0504730 MtrunA17_Chr2g0301591 25.413 303 184 12 1 287 7 283 8.12e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504730 AT2G42990.1 60.764 288 111 2 2 288 1 287 6.59e-127 366
Msa0504730 AT2G04570.1 58.333 288 119 1 1 288 1 287 4.01e-121 351
Msa0504730 AT4G26790.1 62.264 265 99 1 24 288 25 288 5.67e-115 335
Msa0504730 AT4G26790.2 62.264 265 99 1 24 288 25 288 5.67e-115 335
Msa0504730 AT3G43550.1 41.638 293 162 4 2 290 1 288 7.65e-79 241
Msa0504730 AT1G06990.1 41.667 276 158 2 15 288 24 298 1.04e-74 233
Msa0504730 AT1G59406.1 41.581 291 161 4 2 288 1 286 1.47e-74 233
Msa0504730 AT1G59030.1 41.581 291 161 4 2 288 1 286 1.47e-74 233
Msa0504730 AT1G58725.1 41.581 291 161 4 2 288 1 286 1.47e-74 233
Msa0504730 AT1G58520.3 43.561 264 143 3 26 288 28 286 4.47e-73 228
Msa0504730 AT1G58525.1 43.561 264 143 3 26 288 28 286 4.47e-73 228
Msa0504730 AT2G24560.2 40.000 280 161 3 27 299 33 312 6.24e-73 227
Msa0504730 AT2G31540.1 40.909 264 154 2 27 288 34 297 8.20e-73 228
Msa0504730 AT2G24560.1 40.909 264 154 2 27 288 33 296 1.09e-71 226
Msa0504730 AT3G14820.1 39.298 285 167 4 5 288 8 287 7.74e-71 223
Msa0504730 AT2G30220.1 41.353 266 150 3 27 288 32 295 4.42e-70 221
Msa0504730 AT2G30310.1 37.671 292 176 3 3 288 5 296 5.52e-70 221
Msa0504730 AT3G16370.1 43.273 275 147 4 18 288 20 289 1.19e-69 220
Msa0504730 AT2G40250.1 40.146 274 156 3 21 288 29 300 5.33e-69 219
Msa0504730 AT1G58430.1 38.832 291 170 3 6 288 7 297 2.06e-68 217
Msa0504730 AT3G43570.1 39.310 290 140 5 2 288 1 257 6.98e-68 214
Msa0504730 AT5G63170.1 41.522 289 164 4 1 288 1 285 8.86e-68 215
Msa0504730 AT1G20135.1 41.071 280 157 4 14 288 11 287 1.28e-66 211
Msa0504730 AT5G45960.1 39.179 268 157 3 26 288 45 311 1.33e-65 210
Msa0504730 AT1G75880.2 37.201 293 175 2 4 288 20 311 2.15e-65 210
Msa0504730 AT1G75890.2 37.716 289 171 3 8 288 20 307 3.40e-65 209
Msa0504730 AT5G03810.1 41.077 297 162 5 2 290 1 292 3.44e-65 208
Msa0504730 AT1G75890.3 37.716 289 171 3 8 288 49 336 4.90e-65 209
Msa0504730 AT5G03820.1 40.604 298 163 6 2 290 4 296 2.52e-64 206
Msa0504730 AT5G03820.2 40.604 298 163 6 2 290 32 324 4.22e-64 207
Msa0504730 AT1G75880.1 37.075 294 175 3 4 288 20 312 1.21e-63 205
Msa0504730 AT1G75900.1 37.857 280 172 2 9 288 24 301 1.58e-63 204
Msa0504730 AT5G42170.1 39.924 263 154 2 26 288 48 306 3.09e-63 204
Msa0504730 AT5G22810.1 41.481 270 146 5 26 288 32 296 2.23e-62 201
Msa0504730 AT5G45950.1 38.951 267 150 5 26 288 38 295 6.89e-62 200
Msa0504730 AT1G75890.1 36.093 302 171 4 8 288 20 320 1.06e-61 200
Msa0504730 AT1G73610.1 38.636 264 156 3 26 288 33 291 1.68e-60 196
Msa0504730 AT1G20120.1 38.168 262 161 1 27 288 77 337 1.12e-59 196
Msa0504730 AT1G20132.1 35.361 263 169 1 26 288 59 320 6.23e-58 191
Msa0504730 AT1G23500.1 38.754 289 170 3 1 288 10 292 4.13e-56 185
Msa0504730 AT3G53100.1 36.395 294 179 3 1 290 1 290 2.62e-55 183
Msa0504730 AT1G75920.2 36.806 288 178 3 3 288 5 290 1.54e-54 181
Msa0504730 AT1G75910.1 35.821 268 170 1 23 288 23 290 1.04e-53 179
Msa0504730 AT4G28780.1 32.877 292 190 3 2 288 1 291 9.17e-53 177
Msa0504730 AT1G20130.2 35.165 273 163 4 26 288 182 450 7.77e-52 178
Msa0504730 AT1G20130.1 35.165 273 163 4 26 288 202 470 8.59e-52 178
Msa0504730 AT3G04290.1 36.014 286 175 5 5 288 10 289 1.11e-50 171
Msa0504730 AT3G50400.1 34.364 291 182 6 6 288 12 301 3.32e-50 170
Msa0504730 AT1G75920.1 34.768 302 178 4 4 288 1 300 6.21e-50 169
Msa0504730 AT5G33370.2 34.701 268 171 4 28 293 30 295 7.34e-49 166
Msa0504730 AT2G23540.1 35.165 273 169 5 23 288 43 314 3.72e-48 165
Msa0504730 AT5G33370.1 35.361 263 166 4 28 288 30 290 6.81e-48 164
Msa0504730 AT4G10950.2 33.333 264 174 2 26 288 69 331 2.76e-46 161
Msa0504730 AT1G75930.1 35.395 291 178 7 3 288 5 290 3.42e-46 159
Msa0504730 AT5G37690.1 32.414 290 187 6 4 288 1 286 3.29e-45 157
Msa0504730 AT5G08460.1 36.101 277 167 5 19 288 40 313 1.06e-44 156
Msa0504730 AT5G15720.2 36.727 275 162 8 26 293 28 297 5.09e-44 152
Msa0504730 AT4G10950.1 33.333 264 170 3 26 288 69 327 6.55e-44 154
Msa0504730 AT1G74460.1 34.866 261 164 5 31 288 26 283 1.18e-43 153
Msa0504730 AT1G29660.1 33.677 291 186 5 1 288 5 291 1.24e-43 153
Msa0504730 AT5G41890.1 32.707 266 171 4 31 288 34 299 1.97e-43 152
Msa0504730 AT5G18430.1 33.333 264 172 4 28 288 28 290 2.68e-43 152
Msa0504730 AT4G16230.1 34.440 241 146 5 9 245 16 248 1.50e-42 147
Msa0504730 AT5G15720.1 36.996 273 160 8 26 291 28 295 2.10e-42 150
Msa0504730 AT1G29670.1 33.559 295 183 7 2 288 1 290 1.37e-41 147
Msa0504730 AT1G71691.3 34.317 271 168 8 21 288 48 311 2.26e-41 145
Msa0504730 AT1G53920.1 34.066 273 171 6 18 288 38 303 3.17e-41 147
Msa0504730 AT1G29670.2 33.559 295 183 7 2 288 69 358 4.24e-41 148
Msa0504730 AT1G75920.4 35.146 239 152 2 52 288 25 262 1.36e-40 144
Msa0504730 AT1G71691.2 34.317 271 168 8 21 288 48 311 1.56e-40 145
Msa0504730 AT2G19010.1 33.456 272 159 8 7 270 9 266 7.32e-40 142
Msa0504730 AT2G19010.2 33.579 271 158 8 8 270 40 296 1.15e-39 143
Msa0504730 AT5G37690.2 30.450 289 186 6 4 288 1 278 2.37e-39 141
Msa0504730 AT1G75920.3 31.250 288 163 4 3 288 5 259 1.89e-38 138
Msa0504730 AT2G04020.1 40.385 208 106 8 24 224 39 235 2.90e-38 136
Msa0504730 AT1G71250.1 32.847 274 174 6 20 288 33 301 8.61e-38 138
Msa0504730 AT4G18970.1 34.586 266 168 5 26 288 26 288 9.23e-38 137
Msa0504730 AT3G14225.1 32.103 271 166 7 28 288 37 299 1.03e-37 137
Msa0504730 AT2G19060.1 34.182 275 164 8 3 270 4 268 1.39e-37 137
Msa0504730 AT4G18970.2 34.586 266 168 5 26 288 26 288 1.60e-37 138
Msa0504730 AT2G04020.2 40.385 208 106 8 24 224 39 235 1.72e-37 135
Msa0504730 AT3G14225.2 32.331 266 168 6 28 288 37 295 3.91e-37 136
Msa0504730 AT2G03980.2 33.829 269 160 8 24 286 39 295 4.57e-37 135
Msa0504730 AT2G03980.3 33.829 269 160 8 24 286 39 295 4.57e-37 135
Msa0504730 AT2G03980.1 33.829 269 160 8 24 286 39 295 4.57e-37 135
Msa0504730 AT2G03980.4 33.829 269 160 8 24 286 39 295 4.57e-37 135
Msa0504730 AT5G40990.1 33.080 263 170 5 28 288 37 295 7.36e-37 135
Msa0504730 AT5G45670.1 30.479 292 196 6 1 288 1 289 1.03e-36 134
Msa0504730 AT1G53940.1 33.210 271 167 7 28 292 39 301 1.07e-36 133
Msa0504730 AT5G55050.1 32.384 281 178 8 16 288 27 303 1.51e-35 132
Msa0504730 AT1G53940.2 33.333 267 164 7 28 288 39 297 1.52e-35 132
Msa0504730 AT2G31550.1 38.065 155 95 1 135 288 2 156 2.08e-34 125
Msa0504730 AT2G19050.2 33.195 241 149 6 25 263 28 258 2.31e-34 126
Msa0504730 AT1G33811.1 32.374 278 165 11 25 288 31 299 1.51e-33 126
Msa0504730 AT2G19050.1 31.985 272 166 7 25 294 28 282 1.54e-33 126
Msa0504730 AT1G71120.1 31.852 270 170 6 23 288 26 285 3.29e-30 117
Msa0504730 AT4G30140.1 34.025 241 143 8 25 261 30 258 1.56e-29 115
Msa0504730 AT1G53990.1 29.333 300 186 9 1 288 1 286 5.99e-29 114
Msa0504730 AT1G54010.1 28.956 297 179 10 6 291 11 286 1.95e-25 104
Msa0504730 AT1G54020.2 29.181 281 170 11 6 279 8 266 4.67e-25 103
Msa0504730 AT3G14210.1 31.321 265 149 12 28 282 36 277 4.87e-24 100
Msa0504730 AT1G54030.2 30.165 242 146 7 28 267 52 272 2.53e-23 97.8
Msa0504730 AT1G54000.1 26.621 293 191 9 6 291 11 286 6.21e-23 97.8
Msa0504730 AT3G14220.1 30.667 300 160 15 9 288 8 279 1.08e-22 97.1
Msa0504730 AT1G54030.1 30.290 241 145 7 29 267 53 272 1.28e-22 97.4
Msa0504730 AT3G26430.1 28.571 308 180 14 4 288 6 296 3.74e-21 92.8
Msa0504730 AT2G27360.1 27.869 305 190 10 5 288 7 302 4.80e-21 92.8
Msa0504730 AT5G14450.1 27.575 301 187 9 7 288 20 308 1.42e-19 88.6
Msa0504730 AT1G67830.1 28.114 281 169 11 27 288 29 295 3.68e-19 87.0
Msa0504730 AT1G71691.1 28.037 214 145 7 78 288 3 210 4.70e-19 85.5
Msa0504730 AT5G15720.3 30.189 212 139 6 87 291 55 264 6.52e-19 85.9
Msa0504730 AT1G28590.1 29.487 312 171 14 7 288 12 304 8.94e-19 86.3
Msa0504730 AT5G03610.1 28.516 256 158 9 29 280 44 278 1.17e-18 85.5
Msa0504730 AT1G28610.2 28.526 312 185 13 1 288 1 298 1.48e-18 85.5
Msa0504730 AT1G28600.1 28.939 311 185 13 1 288 1 298 1.74e-18 85.5
Msa0504730 AT1G54790.3 27.152 302 189 10 4 288 8 295 2.03e-18 85.1
Msa0504730 AT1G56670.2 26.182 275 174 10 27 288 39 297 2.95e-18 83.6
Msa0504730 AT1G28580.1 26.861 309 189 14 4 288 10 305 3.04e-18 84.7
Msa0504730 AT5G45910.1 30.671 313 173 14 4 288 6 302 3.83e-18 84.3
Msa0504730 AT1G56670.1 26.182 275 174 10 27 288 39 297 5.68e-18 83.6
Msa0504730 AT3G62280.2 28.975 283 166 10 23 290 31 293 8.25e-18 82.4
Msa0504730 AT1G28570.1 29.032 279 170 13 28 288 34 302 2.29e-17 82.0
Msa0504730 AT1G31550.2 28.247 308 188 12 1 288 9 303 7.10e-17 80.5
Msa0504730 AT1G28650.1 27.273 308 192 14 1 288 10 305 8.25e-17 80.5
Msa0504730 AT4G16220.1 43.636 110 53 3 6 114 13 114 2.48e-16 77.4
Msa0504730 AT3G27950.1 27.425 299 184 12 2 282 8 291 2.61e-16 79.0
Msa0504730 AT3G09930.2 29.588 267 142 11 29 280 40 275 4.66e-16 78.2
Msa0504730 AT3G09930.1 29.588 267 142 11 29 280 40 275 4.66e-16 78.2
Msa0504730 AT1G28640.1 25.559 313 191 13 1 288 8 303 1.11e-15 77.0
Msa0504730 AT1G28660.1 26.797 306 196 13 1 288 8 303 2.84e-15 75.9
Msa0504730 AT1G31550.1 27.961 304 186 12 1 284 9 299 4.76e-15 75.5
Msa0504730 AT3G05180.1 25.436 287 175 10 23 288 31 299 1.12e-13 71.2
Msa0504730 AT4G01130.2 24.415 299 174 12 28 298 34 308 2.09e-12 67.0
Msa0504730 AT4G01130.1 24.913 289 165 12 28 288 34 298 1.09e-11 65.1
Msa0504730 AT1G28600.2 31.905 210 114 11 1 194 1 197 7.89e-11 61.2

Find 64 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAATTGTTCCTGCTTATT+TGG 0.108815 3_4:+49713196 Msa0504730:CDS
TGAAAGGGCCATAAATATTA+TGG 0.173430 3_4:+49714601 Msa0504730:CDS
GATACTAGGACTCTTATTTA+TGG 0.179657 3_4:-49712835 None:intergenic
TCCAGGATGTGATACCTTTA+TGG 0.179807 3_4:+49714291 Msa0504730:intron
AATAAGGGAGTCCTTATATT+TGG 0.195057 3_4:+49714388 Msa0504730:CDS
AGAAGGCTAAAGAAATAATA+AGG 0.205621 3_4:+49714372 Msa0504730:CDS
ATGTAGACCCATAATATTTA+TGG 0.208788 3_4:-49714609 None:intergenic
TTTGGAGTTCAATGCAAAAT+TGG 0.216159 3_4:+49714661 Msa0504730:CDS
GTTGCACAACCTTCTCAATT+TGG 0.222834 3_4:+49714767 Msa0504730:CDS
ATCATACATTTAAAATATTA+AGG 0.235114 3_4:-49714819 None:intergenic
GGAGACTCTTCTGTTGATTC+AGG 0.247186 3_4:+49713035 Msa0504730:CDS
AAGAAATTGAAAGCATCTTT+TGG 0.301912 3_4:+49714344 Msa0504730:CDS
ATACTAGGACTCTTATTTAT+GGG 0.331335 3_4:-49712834 None:intergenic
CTTAGTATCAAAGTTGAATA+AGG 0.332106 3_4:+49714688 Msa0504730:CDS
TCCTATGCTAACCAAATATA+AGG 0.334606 3_4:-49714399 None:intergenic
GATTTCATCTCTGAGGCATT+TGG 0.336422 3_4:+49713167 Msa0504730:CDS
AAGATGCTTTCAATTTCTTT+TGG 0.344742 3_4:-49714340 None:intergenic
TCCAAATAAGCAGGAACAAT+TGG 0.379299 3_4:-49713197 None:intergenic
AATTCAACTTCTTTCCATAA+AGG 0.381519 3_4:-49714305 None:intergenic
CTAGGTCATAAATTTCTCTA+AGG 0.395264 3_4:-49714526 None:intergenic
CCAATCTCTTTATCATTCTC+TGG 0.395468 3_4:+49712877 Msa0504730:five_prime_UTR
TTTGGAAAATCTTTACCATA+TGG 0.399077 3_4:-49713101 None:intergenic
TGGGGTGTCTGCCACTTGAA+AGG 0.401836 3_4:+49714585 Msa0504730:CDS
GAAAGGGCCATAAATATTAT+GGG 0.413250 3_4:+49714602 Msa0504730:CDS
GGACCTCCATGGATTTCAAT+TGG 0.436345 3_4:+49714709 Msa0504730:CDS
TCTGACAGGGTTACCTCCCA+TGG 0.441937 3_4:+49714565 Msa0504730:CDS
GTATTACAATGATGTTGCTT+TGG 0.448572 3_4:+49714643 Msa0504730:CDS
CCAGAGAATGATAAAGAGAT+TGG 0.449105 3_4:-49712877 None:intergenic
TTTCCAAATGGTGATGCTAC+TGG 0.460194 3_4:+49713116 Msa0504730:CDS
CTACCAGTAGCATCACCATT+TGG 0.461312 3_4:-49713119 None:intergenic
TTGGAGTTCAATGCAAAATT+GGG 0.463408 3_4:+49714662 Msa0504730:CDS
CTTAGAGAAATTTATGACCT+AGG 0.466601 3_4:+49714527 Msa0504730:CDS
GCAAGGAAAATTTCTCTGAC+AGG 0.469442 3_4:+49714551 Msa0504730:CDS
GAAGGCTAAAGAAATAATAA+GGG 0.479372 3_4:+49714373 Msa0504730:CDS
GGGGTGTCTGCCACTTGAAA+GGG 0.479500 3_4:+49714586 Msa0504730:CDS
CTGACAGGGTTACCTCCCAT+GGG 0.492340 3_4:+49714566 Msa0504730:CDS
CATCTACCAATTGAAATCCA+TGG 0.493897 3_4:-49714715 None:intergenic
ATTTCATTCCAACATTAGCT+AGG 0.520508 3_4:+49713066 Msa0504730:CDS
TTATATATATGCAAACAAAC+AGG 0.527875 3_4:+49712799 Msa0504730:five_prime_UTR
GGAAAATCTTTACCATATGG+TGG 0.532684 3_4:-49713098 None:intergenic
TAAGTAGGATCCAAATAAGC+AGG 0.535765 3_4:-49713206 None:intergenic
TTCAAGTGGCAGACACCCCA+TGG 0.536664 3_4:-49714582 None:intergenic
AAATTGCTCCTAGCTAATGT+TGG 0.544150 3_4:-49713074 None:intergenic
AAATCTGATATATCATAAGT+AGG 0.544264 3_4:-49713221 None:intergenic
TGTATGAGTACTATGATACT+AGG 0.558572 3_4:-49712849 None:intergenic
ATTACACACAGCTTGAAAGA+AGG 0.561595 3_4:+49714444 Msa0504730:CDS
GCTACTGGTAGATTCTCAAA+TGG 0.564673 3_4:+49713131 Msa0504730:CDS
CAAGGAAAATTTCTCTGACA+GGG 0.564857 3_4:+49714552 Msa0504730:CDS
CACACAGCTTGAAAGAAGGA+TGG 0.578080 3_4:+49714448 Msa0504730:CDS
TCCTTATATTTGGTTAGCAT+AGG 0.584565 3_4:+49714398 Msa0504730:CDS
ACAAACTTACCAAATTGAGA+AGG 0.602477 3_4:-49714776 None:intergenic
TGCCACTGATTTCATCTCTG+AGG 0.615807 3_4:+49713160 Msa0504730:CDS
CATGTTTCAATATCAAACAG+TGG 0.622985 3_4:+49712987 Msa0504730:CDS
ATATTTATGGCCCTTTCAAG+TGG 0.628697 3_4:-49714596 None:intergenic
ATAATCAATTTAGTGAGACC+AGG 0.631492 3_4:+49712910 Msa0504730:five_prime_UTR
GAAAGAAGTTGAATTCTACA+AGG 0.633030 3_4:+49714313 Msa0504730:CDS
TATGGGTCTACATAGTTGTG+TGG 0.633469 3_4:+49714619 Msa0504730:CDS
AAATTTATGACCTAGGAGCA+AGG 0.635448 3_4:+49714534 Msa0504730:CDS
TCAAGTGGCAGACACCCCAT+GGG 0.655358 3_4:-49714581 None:intergenic
AGTGGCAGACACCCCATGGG+AGG 0.664064 3_4:-49714578 None:intergenic
AAGTTGAATAAGGACCTCCA+TGG 0.665684 3_4:+49714698 Msa0504730:CDS
TGCCTCAGAGATGAAATCAG+TGG 0.672431 3_4:-49713162 None:intergenic
TGACAGGGTTACCTCCCATG+GGG 0.694214 3_4:+49714567 Msa0504730:CDS
CTACCAATTGAAATCCATGG+AGG 0.762628 3_4:-49714712 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGTTACATTTTTTTTCT+TGG + chr3_4:49713315-49713334 Msa0504730:intron 15.0%
!! AAAATTGACAAAATTGAAAA+AGG + chr3_4:49713417-49713436 Msa0504730:intron 15.0%
!!! AAGATGAAATTTTATGTTTT+TGG + chr3_4:49713802-49713821 Msa0504730:intron 15.0%
!! AATTCTTTCAAAAATCTATA+TGG + chr3_4:49713918-49713937 Msa0504730:intron 15.0%
!! ATACGACAAAAAATATTTAA+AGG + chr3_4:49714014-49714033 Msa0504730:intron 15.0%
!!! GTACTAATATCATTTTTTTT+AGG - chr3_4:49714243-49714262 None:intergenic 15.0%
!! AATAAAAATTGAACTCAAAT+AGG - chr3_4:49714265-49714284 None:intergenic 15.0%
!!! TTTAGTTACATTTTTTTTCT+TGG + chr3_4:49713315-49713334 Msa0504730:intron 15.0%
!! AAAATTGACAAAATTGAAAA+AGG + chr3_4:49713417-49713436 Msa0504730:intron 15.0%
!!! AAGATGAAATTTTATGTTTT+TGG + chr3_4:49713802-49713821 Msa0504730:intron 15.0%
!! AATTCTTTCAAAAATCTATA+TGG + chr3_4:49713918-49713937 Msa0504730:intron 15.0%
!! ATACGACAAAAAATATTTAA+AGG + chr3_4:49714014-49714033 Msa0504730:intron 15.0%
!!! GTACTAATATCATTTTTTTT+AGG - chr3_4:49714243-49714262 None:intergenic 15.0%
!! AATAAAAATTGAACTCAAAT+AGG - chr3_4:49714265-49714284 None:intergenic 15.0%
!! TTATATATATGCAAACAAAC+AGG + chr3_4:49712799-49712818 Msa0504730:five_prime_UTR 20.0%
!!! TGATGAAAATGTACATTTTA+TGG + chr3_4:49712940-49712959 Msa0504730:CDS 20.0%
!! AAATCTGATATATCATAAGT+AGG - chr3_4:49713224-49713243 None:intergenic 20.0%
!!! TTTTCTTTTCTTTTCTTGAA+AGG - chr3_4:49713561-49713580 None:intergenic 20.0%
!! TTTCAAGAAAAGAAAAGAAA+AGG + chr3_4:49713560-49713579 Msa0504730:intron 20.0%
!! TCAAATAATTGAATGTAAGT+TGG - chr3_4:49713627-49713646 None:intergenic 20.0%
!! AACTTACATTCAATTATTTG+AGG + chr3_4:49713626-49713645 Msa0504730:intron 20.0%
!! ACTTACATTCAATTATTTGA+GGG + chr3_4:49713627-49713646 Msa0504730:intron 20.0%
!!! AGCTAAAGTATTAAAATGAT+GGG - chr3_4:49713679-49713698 None:intergenic 20.0%
!!! TAGCTAAAGTATTAAAATGA+TGG - chr3_4:49713680-49713699 None:intergenic 20.0%
!!! TAGTTTTGTAGATTAAAAGT+AGG + chr3_4:49713736-49713755 Msa0504730:intron 20.0%
!!! AGTAGATATTTTTTTAGACA+TGG + chr3_4:49713763-49713782 Msa0504730:intron 20.0%
!!! TTTTTGAAAGAATTTTTGCA+TGG - chr3_4:49713912-49713931 None:intergenic 20.0%
!! TTTCATTATATTTGTTCACT+TGG + chr3_4:49714115-49714134 Msa0504730:intron 20.0%
!!! CTAATATCATTTTTTTTAGG+AGG - chr3_4:49714240-49714259 None:intergenic 20.0%
!! TTATATATATGCAAACAAAC+AGG + chr3_4:49712799-49712818 Msa0504730:five_prime_UTR 20.0%
!!! TGATGAAAATGTACATTTTA+TGG + chr3_4:49712940-49712959 Msa0504730:CDS 20.0%
!! AAATCTGATATATCATAAGT+AGG - chr3_4:49713224-49713243 None:intergenic 20.0%
!!! TTTTCTTTTCTTTTCTTGAA+AGG - chr3_4:49713561-49713580 None:intergenic 20.0%
!! TTTCAAGAAAAGAAAAGAAA+AGG + chr3_4:49713560-49713579 Msa0504730:intron 20.0%
!! TCAAATAATTGAATGTAAGT+TGG - chr3_4:49713627-49713646 None:intergenic 20.0%
!! AACTTACATTCAATTATTTG+AGG + chr3_4:49713626-49713645 Msa0504730:intron 20.0%
!! ACTTACATTCAATTATTTGA+GGG + chr3_4:49713627-49713646 Msa0504730:intron 20.0%
!!! AGCTAAAGTATTAAAATGAT+GGG - chr3_4:49713679-49713698 None:intergenic 20.0%
!!! TAGCTAAAGTATTAAAATGA+TGG - chr3_4:49713680-49713699 None:intergenic 20.0%
!!! TAGTTTTGTAGATTAAAAGT+AGG + chr3_4:49713736-49713755 Msa0504730:intron 20.0%
!!! AGTAGATATTTTTTTAGACA+TGG + chr3_4:49713763-49713782 Msa0504730:intron 20.0%
!!! TTTTTGAAAGAATTTTTGCA+TGG - chr3_4:49713912-49713931 None:intergenic 20.0%
!! TTTCATTATATTTGTTCACT+TGG + chr3_4:49714115-49714134 Msa0504730:intron 20.0%
!!! CTAATATCATTTTTTTTAGG+AGG - chr3_4:49714240-49714259 None:intergenic 20.0%
!! ATACTAGGACTCTTATTTAT+GGG - chr3_4:49712837-49712856 None:intergenic 25.0%
! TTTGGAAAATCTTTACCATA+TGG - chr3_4:49713104-49713123 None:intergenic 25.0%
!! TATGGTAAAGATTTTCCAAA+TGG + chr3_4:49713104-49713123 Msa0504730:CDS 25.0%
!! AGTATTAAAATGATGGGAAA+TGG - chr3_4:49713673-49713692 None:intergenic 25.0%
! CGACTTAAAAGTTAAAAGAA+TGG + chr3_4:49713952-49713971 Msa0504730:intron 25.0%
! TGACTTAAAAGTTAAAAGCA+TGG + chr3_4:49713986-49714005 Msa0504730:intron 25.0%
! TGATTGAGTCTAATTTCATA+TGG - chr3_4:49714168-49714187 None:intergenic 25.0%
!! CAATTTTTATTGTGTTTTCC+AGG + chr3_4:49714274-49714293 Msa0504730:intron 25.0%
! AATTCAACTTCTTTCCATAA+AGG - chr3_4:49714308-49714327 None:intergenic 25.0%
!! AAGATGCTTTCAATTTCTTT+TGG - chr3_4:49714343-49714362 None:intergenic 25.0%
!!! AAGAAATTGAAAGCATCTTT+TGG + chr3_4:49714344-49714363 Msa0504730:CDS 25.0%
! AGAAGGCTAAAGAAATAATA+AGG + chr3_4:49714372-49714391 Msa0504730:CDS 25.0%
! GAAGGCTAAAGAAATAATAA+GGG + chr3_4:49714373-49714392 Msa0504730:CDS 25.0%
! ATGTAGACCCATAATATTTA+TGG - chr3_4:49714612-49714631 None:intergenic 25.0%
! CTTAGTATCAAAGTTGAATA+AGG + chr3_4:49714688-49714707 Msa0504730:CDS 25.0%
!! ATACTAGGACTCTTATTTAT+GGG - chr3_4:49712837-49712856 None:intergenic 25.0%
! TTTGGAAAATCTTTACCATA+TGG - chr3_4:49713104-49713123 None:intergenic 25.0%
!! TATGGTAAAGATTTTCCAAA+TGG + chr3_4:49713104-49713123 Msa0504730:CDS 25.0%
!! AGTATTAAAATGATGGGAAA+TGG - chr3_4:49713673-49713692 None:intergenic 25.0%
! CGACTTAAAAGTTAAAAGAA+TGG + chr3_4:49713952-49713971 Msa0504730:intron 25.0%
! TGACTTAAAAGTTAAAAGCA+TGG + chr3_4:49713986-49714005 Msa0504730:intron 25.0%
! TGATTGAGTCTAATTTCATA+TGG - chr3_4:49714168-49714187 None:intergenic 25.0%
!! CAATTTTTATTGTGTTTTCC+AGG + chr3_4:49714274-49714293 Msa0504730:intron 25.0%
! AATTCAACTTCTTTCCATAA+AGG - chr3_4:49714308-49714327 None:intergenic 25.0%
!! AAGATGCTTTCAATTTCTTT+TGG - chr3_4:49714343-49714362 None:intergenic 25.0%
!!! AAGAAATTGAAAGCATCTTT+TGG + chr3_4:49714344-49714363 Msa0504730:CDS 25.0%
! AGAAGGCTAAAGAAATAATA+AGG + chr3_4:49714372-49714391 Msa0504730:CDS 25.0%
! GAAGGCTAAAGAAATAATAA+GGG + chr3_4:49714373-49714392 Msa0504730:CDS 25.0%
! ATGTAGACCCATAATATTTA+TGG - chr3_4:49714612-49714631 None:intergenic 25.0%
! CTTAGTATCAAAGTTGAATA+AGG + chr3_4:49714688-49714707 Msa0504730:CDS 25.0%
! GATACTAGGACTCTTATTTA+TGG - chr3_4:49712838-49712857 None:intergenic 30.0%
TGTATGAGTACTATGATACT+AGG - chr3_4:49712852-49712871 None:intergenic 30.0%
ATAATCAATTTAGTGAGACC+AGG + chr3_4:49712910-49712929 Msa0504730:five_prime_UTR 30.0%
!! CATTTTCATCATTTTTCACC+TGG - chr3_4:49712931-49712950 None:intergenic 30.0%
CATGTTTCAATATCAAACAG+TGG + chr3_4:49712987-49713006 Msa0504730:CDS 30.0%
! GTTCCAGCTATAATTGTTTT+TGG + chr3_4:49713014-49713033 Msa0504730:CDS 30.0%
TCTCCAAAAACAATTATAGC+TGG - chr3_4:49713020-49713039 None:intergenic 30.0%
ATTTCATTCCAACATTAGCT+AGG + chr3_4:49713066-49713085 Msa0504730:CDS 30.0%
! GATATATCAGATTTTGCTAC+TGG + chr3_4:49713230-49713249 Msa0504730:CDS 30.0%
GTTAAGATTATTAGACCACT+TGG + chr3_4:49713389-49713408 Msa0504730:intron 30.0%
!! TGTCAATTTTAGTAACCAAG+TGG - chr3_4:49713407-49713426 None:intergenic 30.0%
GAAAAGAAAAGGAACTCAAT+CGG + chr3_4:49713571-49713590 Msa0504730:intron 30.0%
!! TAGGAGGTACTAATATCATT+TGG - chr3_4:49714224-49714243 None:intergenic 30.0%
GAAAGAAGTTGAATTCTACA+AGG + chr3_4:49714313-49714332 Msa0504730:CDS 30.0%
AATAAGGGAGTCCTTATATT+TGG + chr3_4:49714388-49714407 Msa0504730:CDS 30.0%
TCCTTATATTTGGTTAGCAT+AGG + chr3_4:49714398-49714417 Msa0504730:CDS 30.0%
TCCTATGCTAACCAAATATA+AGG - chr3_4:49714402-49714421 None:intergenic 30.0%
CTAGGTCATAAATTTCTCTA+AGG - chr3_4:49714529-49714548 None:intergenic 30.0%
CTTAGAGAAATTTATGACCT+AGG + chr3_4:49714527-49714546 Msa0504730:CDS 30.0%
TGAAAGGGCCATAAATATTA+TGG + chr3_4:49714601-49714620 Msa0504730:CDS 30.0%
GAAAGGGCCATAAATATTAT+GGG + chr3_4:49714602-49714621 Msa0504730:CDS 30.0%
! GTATTACAATGATGTTGCTT+TGG + chr3_4:49714643-49714662 Msa0504730:CDS 30.0%
! TTTGGAGTTCAATGCAAAAT+TGG + chr3_4:49714661-49714680 Msa0504730:CDS 30.0%
TTGGAGTTCAATGCAAAATT+GGG + chr3_4:49714662-49714681 Msa0504730:CDS 30.0%
ACAAACTTACCAAATTGAGA+AGG - chr3_4:49714779-49714798 None:intergenic 30.0%
! GATACTAGGACTCTTATTTA+TGG - chr3_4:49712838-49712857 None:intergenic 30.0%
TGTATGAGTACTATGATACT+AGG - chr3_4:49712852-49712871 None:intergenic 30.0%
ATAATCAATTTAGTGAGACC+AGG + chr3_4:49712910-49712929 Msa0504730:five_prime_UTR 30.0%
!! CATTTTCATCATTTTTCACC+TGG - chr3_4:49712931-49712950 None:intergenic 30.0%
CATGTTTCAATATCAAACAG+TGG + chr3_4:49712987-49713006 Msa0504730:CDS 30.0%
! GTTCCAGCTATAATTGTTTT+TGG + chr3_4:49713014-49713033 Msa0504730:CDS 30.0%
TCTCCAAAAACAATTATAGC+TGG - chr3_4:49713020-49713039 None:intergenic 30.0%
ATTTCATTCCAACATTAGCT+AGG + chr3_4:49713066-49713085 Msa0504730:CDS 30.0%
! GATATATCAGATTTTGCTAC+TGG + chr3_4:49713230-49713249 Msa0504730:CDS 30.0%
GTTAAGATTATTAGACCACT+TGG + chr3_4:49713389-49713408 Msa0504730:intron 30.0%
!! TGTCAATTTTAGTAACCAAG+TGG - chr3_4:49713407-49713426 None:intergenic 30.0%
GAAAAGAAAAGGAACTCAAT+CGG + chr3_4:49713571-49713590 Msa0504730:intron 30.0%
!! TAGGAGGTACTAATATCATT+TGG - chr3_4:49714224-49714243 None:intergenic 30.0%
GAAAGAAGTTGAATTCTACA+AGG + chr3_4:49714313-49714332 Msa0504730:CDS 30.0%
AATAAGGGAGTCCTTATATT+TGG + chr3_4:49714388-49714407 Msa0504730:CDS 30.0%
TCCTTATATTTGGTTAGCAT+AGG + chr3_4:49714398-49714417 Msa0504730:CDS 30.0%
TCCTATGCTAACCAAATATA+AGG - chr3_4:49714402-49714421 None:intergenic 30.0%
CTAGGTCATAAATTTCTCTA+AGG - chr3_4:49714529-49714548 None:intergenic 30.0%
CTTAGAGAAATTTATGACCT+AGG + chr3_4:49714527-49714546 Msa0504730:CDS 30.0%
TGAAAGGGCCATAAATATTA+TGG + chr3_4:49714601-49714620 Msa0504730:CDS 30.0%
GAAAGGGCCATAAATATTAT+GGG + chr3_4:49714602-49714621 Msa0504730:CDS 30.0%
! GTATTACAATGATGTTGCTT+TGG + chr3_4:49714643-49714662 Msa0504730:CDS 30.0%
! TTTGGAGTTCAATGCAAAAT+TGG + chr3_4:49714661-49714680 Msa0504730:CDS 30.0%
TTGGAGTTCAATGCAAAATT+GGG + chr3_4:49714662-49714681 Msa0504730:CDS 30.0%
ACAAACTTACCAAATTGAGA+AGG - chr3_4:49714779-49714798 None:intergenic 30.0%
CCAGAGAATGATAAAGAGAT+TGG - chr3_4:49712880-49712899 None:intergenic 35.0%
CCAATCTCTTTATCATTCTC+TGG + chr3_4:49712877-49712896 Msa0504730:five_prime_UTR 35.0%
AAATTGCTCCTAGCTAATGT+TGG - chr3_4:49713077-49713096 None:intergenic 35.0%
GGAAAATCTTTACCATATGG+TGG - chr3_4:49713101-49713120 None:intergenic 35.0%
TCCAAATAAGCAGGAACAAT+TGG - chr3_4:49713200-49713219 None:intergenic 35.0%
TAAGTAGGATCCAAATAAGC+AGG - chr3_4:49713209-49713228 None:intergenic 35.0%
ATTACACACAGCTTGAAAGA+AGG + chr3_4:49714444-49714463 Msa0504730:CDS 35.0%
AAATTTATGACCTAGGAGCA+AGG + chr3_4:49714534-49714553 Msa0504730:CDS 35.0%
CAAGGAAAATTTCTCTGACA+GGG + chr3_4:49714552-49714571 Msa0504730:CDS 35.0%
ATATTTATGGCCCTTTCAAG+TGG - chr3_4:49714599-49714618 None:intergenic 35.0%
CATCTACCAATTGAAATCCA+TGG - chr3_4:49714718-49714737 None:intergenic 35.0%
CCAGAGAATGATAAAGAGAT+TGG - chr3_4:49712880-49712899 None:intergenic 35.0%
CCAATCTCTTTATCATTCTC+TGG + chr3_4:49712877-49712896 Msa0504730:five_prime_UTR 35.0%
AAATTGCTCCTAGCTAATGT+TGG - chr3_4:49713077-49713096 None:intergenic 35.0%
GGAAAATCTTTACCATATGG+TGG - chr3_4:49713101-49713120 None:intergenic 35.0%
TCCAAATAAGCAGGAACAAT+TGG - chr3_4:49713200-49713219 None:intergenic 35.0%
TAAGTAGGATCCAAATAAGC+AGG - chr3_4:49713209-49713228 None:intergenic 35.0%
ATTACACACAGCTTGAAAGA+AGG + chr3_4:49714444-49714463 Msa0504730:CDS 35.0%
AAATTTATGACCTAGGAGCA+AGG + chr3_4:49714534-49714553 Msa0504730:CDS 35.0%
CAAGGAAAATTTCTCTGACA+GGG + chr3_4:49714552-49714571 Msa0504730:CDS 35.0%
ATATTTATGGCCCTTTCAAG+TGG - chr3_4:49714599-49714618 None:intergenic 35.0%
CATCTACCAATTGAAATCCA+TGG - chr3_4:49714718-49714737 None:intergenic 35.0%
! AGGAGCAATTTTCCACCATA+TGG + chr3_4:49713086-49713105 Msa0504730:CDS 40.0%
! TTTCCAAATGGTGATGCTAC+TGG + chr3_4:49713116-49713135 Msa0504730:CDS 40.0%
GCTACTGGTAGATTCTCAAA+TGG + chr3_4:49713131-49713150 Msa0504730:CDS 40.0%
!! GATTTCATCTCTGAGGCATT+TGG + chr3_4:49713167-49713186 Msa0504730:CDS 40.0%
GCCAATTGTTCCTGCTTATT+TGG + chr3_4:49713196-49713215 Msa0504730:CDS 40.0%
TCCAGGATGTGATACCTTTA+TGG + chr3_4:49714291-49714310 Msa0504730:intron 40.0%
!! TCCATAAAGGTATCACATCC+TGG - chr3_4:49714295-49714314 None:intergenic 40.0%
!!! AGCATCTTTTGGTGATGAGA+AGG + chr3_4:49714355-49714374 Msa0504730:CDS 40.0%
! GAGAAATTTTCCTTGCTCCT+AGG - chr3_4:49714547-49714566 None:intergenic 40.0%
GCAAGGAAAATTTCTCTGAC+AGG + chr3_4:49714551-49714570 Msa0504730:CDS 40.0%
TATGGGTCTACATAGTTGTG+TGG + chr3_4:49714619-49714638 Msa0504730:CDS 40.0%
AAGTTGAATAAGGACCTCCA+TGG + chr3_4:49714698-49714717 Msa0504730:CDS 40.0%
CTACCAATTGAAATCCATGG+AGG - chr3_4:49714715-49714734 None:intergenic 40.0%
GTTGCACAACCTTCTCAATT+TGG + chr3_4:49714767-49714786 Msa0504730:CDS 40.0%
! AGGAGCAATTTTCCACCATA+TGG + chr3_4:49713086-49713105 Msa0504730:CDS 40.0%
! TTTCCAAATGGTGATGCTAC+TGG + chr3_4:49713116-49713135 Msa0504730:CDS 40.0%
GCTACTGGTAGATTCTCAAA+TGG + chr3_4:49713131-49713150 Msa0504730:CDS 40.0%
!! GATTTCATCTCTGAGGCATT+TGG + chr3_4:49713167-49713186 Msa0504730:CDS 40.0%
GCCAATTGTTCCTGCTTATT+TGG + chr3_4:49713196-49713215 Msa0504730:CDS 40.0%
TCCAGGATGTGATACCTTTA+TGG + chr3_4:49714291-49714310 Msa0504730:intron 40.0%
!! TCCATAAAGGTATCACATCC+TGG - chr3_4:49714295-49714314 None:intergenic 40.0%
!!! AGCATCTTTTGGTGATGAGA+AGG + chr3_4:49714355-49714374 Msa0504730:CDS 40.0%
! GAGAAATTTTCCTTGCTCCT+AGG - chr3_4:49714547-49714566 None:intergenic 40.0%
GCAAGGAAAATTTCTCTGAC+AGG + chr3_4:49714551-49714570 Msa0504730:CDS 40.0%
TATGGGTCTACATAGTTGTG+TGG + chr3_4:49714619-49714638 Msa0504730:CDS 40.0%
AAGTTGAATAAGGACCTCCA+TGG + chr3_4:49714698-49714717 Msa0504730:CDS 40.0%
CTACCAATTGAAATCCATGG+AGG - chr3_4:49714715-49714734 None:intergenic 40.0%
GTTGCACAACCTTCTCAATT+TGG + chr3_4:49714767-49714786 Msa0504730:CDS 40.0%
!! GGAGACTCTTCTGTTGATTC+AGG + chr3_4:49713035-49713054 Msa0504730:CDS 45.0%
CTACCAGTAGCATCACCATT+TGG - chr3_4:49713122-49713141 None:intergenic 45.0%
!! TGCCACTGATTTCATCTCTG+AGG + chr3_4:49713160-49713179 Msa0504730:CDS 45.0%
TGCCTCAGAGATGAAATCAG+TGG - chr3_4:49713165-49713184 None:intergenic 45.0%
!!! GGTGTTTGTTTTGCTTCTGC+TGG + chr3_4:49713251-49713270 Msa0504730:CDS 45.0%
! TGTTTTGCTTCTGCTGGTAC+TGG + chr3_4:49713257-49713276 Msa0504730:CDS 45.0%
CACACAGCTTGAAAGAAGGA+TGG + chr3_4:49714448-49714467 Msa0504730:CDS 45.0%
GGACCTCCATGGATTTCAAT+TGG + chr3_4:49714709-49714728 Msa0504730:CDS 45.0%
!! GGAGACTCTTCTGTTGATTC+AGG + chr3_4:49713035-49713054 Msa0504730:CDS 45.0%
CTACCAGTAGCATCACCATT+TGG - chr3_4:49713122-49713141 None:intergenic 45.0%
!! TGCCACTGATTTCATCTCTG+AGG + chr3_4:49713160-49713179 Msa0504730:CDS 45.0%
TGCCTCAGAGATGAAATCAG+TGG - chr3_4:49713165-49713184 None:intergenic 45.0%
!!! GGTGTTTGTTTTGCTTCTGC+TGG + chr3_4:49713251-49713270 Msa0504730:CDS 45.0%
! TGTTTTGCTTCTGCTGGTAC+TGG + chr3_4:49713257-49713276 Msa0504730:CDS 45.0%
CACACAGCTTGAAAGAAGGA+TGG + chr3_4:49714448-49714467 Msa0504730:CDS 45.0%
GGACCTCCATGGATTTCAAT+TGG + chr3_4:49714709-49714728 Msa0504730:CDS 45.0%
TCTGACAGGGTTACCTCCCA+TGG + chr3_4:49714565-49714584 Msa0504730:CDS 55.0%
CTGACAGGGTTACCTCCCAT+GGG + chr3_4:49714566-49714585 Msa0504730:CDS 55.0%
TGACAGGGTTACCTCCCATG+GGG + chr3_4:49714567-49714586 Msa0504730:CDS 55.0%
TCAAGTGGCAGACACCCCAT+GGG - chr3_4:49714584-49714603 None:intergenic 55.0%
TTCAAGTGGCAGACACCCCA+TGG - chr3_4:49714585-49714604 None:intergenic 55.0%
! TGGGGTGTCTGCCACTTGAA+AGG + chr3_4:49714585-49714604 Msa0504730:CDS 55.0%
! GGGGTGTCTGCCACTTGAAA+GGG + chr3_4:49714586-49714605 Msa0504730:CDS 55.0%
TCTGACAGGGTTACCTCCCA+TGG + chr3_4:49714565-49714584 Msa0504730:CDS 55.0%
CTGACAGGGTTACCTCCCAT+GGG + chr3_4:49714566-49714585 Msa0504730:CDS 55.0%
TGACAGGGTTACCTCCCATG+GGG + chr3_4:49714567-49714586 Msa0504730:CDS 55.0%
TCAAGTGGCAGACACCCCAT+GGG - chr3_4:49714584-49714603 None:intergenic 55.0%
TTCAAGTGGCAGACACCCCA+TGG - chr3_4:49714585-49714604 None:intergenic 55.0%
! TGGGGTGTCTGCCACTTGAA+AGG + chr3_4:49714585-49714604 Msa0504730:CDS 55.0%
! GGGGTGTCTGCCACTTGAAA+GGG + chr3_4:49714586-49714605 Msa0504730:CDS 55.0%
AGTGGCAGACACCCCATGGG+AGG - chr3_4:49714581-49714600 None:intergenic 65.0%
AGTGGCAGACACCCCATGGG+AGG - chr3_4:49714581-49714600 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 49712778 49714832 49712778 ID=Msa0504730;Name=Msa0504730
chr3_4 mRNA 49712778 49714832 49712778 ID=Msa0504730-mRNA-1;Parent=Msa0504730;Name=Msa0504730-mRNA-1;_AED=0.04;_eAED=0.04;_QI=161|1|0.5|1|1|1|2|0|301
chr3_4 exon 49712778 49713307 49712778 ID=Msa0504730-mRNA-1:exon:10675;Parent=Msa0504730-mRNA-1
chr3_4 exon 49714296 49714832 49714296 ID=Msa0504730-mRNA-1:exon:10676;Parent=Msa0504730-mRNA-1
chr3_4 five_prime_UTR 49712778 49712938 49712778 ID=Msa0504730-mRNA-1:five_prime_utr;Parent=Msa0504730-mRNA-1
chr3_4 CDS 49712939 49713307 49712939 ID=Msa0504730-mRNA-1:cds;Parent=Msa0504730-mRNA-1
chr3_4 CDS 49714296 49714832 49714296 ID=Msa0504730-mRNA-1:cds;Parent=Msa0504730-mRNA-1
Gene Sequence

>Msa0504730

ATGATGAAAATGTACATTTTATGGCTCTTCTTTATTCAAATTTTGTTGCATGTTTCAATATCAAACAGTGGAAAAGTTCCAGCTATAATTGTTTTTGGAGACTCTTCTGTTGATTCAGGTAACAACAATTTCATTCCAACATTAGCTAGGAGCAATTTTCCACCATATGGTAAAGATTTTCCAAATGGTGATGCTACTGGTAGATTCTCAAATGGTAGAATTGCCACTGATTTCATCTCTGAGGCATTTGGACTTAAGCCAATTGTTCCTGCTTATTTGGATCCTACTTATGATATATCAGATTTTGCTACTGGTGTTTGTTTTGCTTCTGCTGGTACTGGATTTGATAATGCTACTGCAAATGTTGCTGATGTGATACCTTTATGGAAAGAAGTTGAATTCTACAAGGACTACCAAAAGAAATTGAAAGCATCTTTTGGTGATGAGAAGGCTAAAGAAATAATAAGGGAGTCCTTATATTTGGTTAGCATAGGAACAAATGATTTTCTTGAGAACTATTACACACAGCTTGAAAGAAGGATGGAATATAAAACTGTTCAAGAATATGAAGATTTTTTAATTGTTCTTGCTGAAAATTTCCTTAGAGAAATTTATGACCTAGGAGCAAGGAAAATTTCTCTGACAGGGTTACCTCCCATGGGGTGTCTGCCACTTGAAAGGGCCATAAATATTATGGGTCTACATAGTTGTGTGGAGTATTACAATGATGTTGCTTTGGAGTTCAATGCAAAATTGGGATGCTTAGTATCAAAGTTGAATAAGGACCTCCATGGATTTCAATTGGTAGATGCAAATGCTTATGATTTGCTACTGCAAATTGTTGCACAACCTTCTCAATTTGGTAAGTTTGTCTTTGTTTTTCTATCTTACTCCTTAATATTTTAA
Protein sequence

>Msa0504730

MMKMYILWLFFIQILLHVSISNSGKVPAIIVFGDSSVDSGNNNFIPTLARSNFPPYGKDFPNGDATGRFSNGRIATDFISEAFGLKPIVPAYLDPTYDISDFATGVCFASAGTGFDNATANVADVIPLWKEVEFYKDYQKKLKASFGDEKAKEIIRESLYLVSIGTNDFLENYYTQLERRMEYKTVQEYEDFLIVLAENFLREIYDLGARKISLTGLPPMGCLPLERAINIMGLHSCVEYYNDVALEFNAKLGCLVSKLNKDLHGFQLVDANAYDLLLQIVAQPSQFGKFVFVFLSYSLIF*