AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24631


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24631.t1 MTR_1g026550 88.166 338 35 3 1 338 1 333 0.0 540
MS.gene24631.t1 MTR_1g026550 95.522 201 7 1 1 201 1 199 1.85e-121 349
MS.gene24631.t1 MTR_5g097280 42.353 255 126 9 77 327 16 253 1.33e-52 174
MS.gene24631.t1 MTR_6g011870 43.145 248 118 9 85 327 24 253 3.14e-51 171
MS.gene24631.t1 MTR_6g011880 42.742 248 119 9 85 327 24 253 7.46e-51 170
MS.gene24631.t1 MTR_6g012080 45.740 223 99 8 109 327 49 253 9.65e-51 170
MS.gene24631.t1 MTR_6g012110 45.415 229 103 8 103 327 43 253 1.67e-50 169
MS.gene24631.t1 MTR_4g094605 42.972 249 118 9 85 327 24 254 1.97e-50 169
MS.gene24631.t1 MTR_2g081090 42.291 227 115 5 103 327 13 225 3.35e-50 167
MS.gene24631.t1 MTR_6g011890 45.291 223 100 8 109 327 49 253 4.05e-50 168
MS.gene24631.t1 MTR_2g081090 42.857 224 112 5 106 327 43 252 7.89e-50 167
MS.gene24631.t1 MTR_6g060175 41.772 237 119 5 95 329 57 276 2.68e-42 148
MS.gene24631.t1 MTR_6g043600 40.171 234 100 9 97 327 21 217 7.03e-40 140
MS.gene24631.t1 MTR_3g101670 37.815 238 118 6 105 334 49 264 1.44e-39 140
MS.gene24631.t1 MTR_6g060175 39.662 237 114 6 95 329 57 266 6.40e-35 129
MS.gene24631.t1 MTR_5g098780 37.069 232 103 9 128 338 66 275 5.30e-34 126
MS.gene24631.t1 MTR_5g098785 37.500 232 102 9 128 338 68 277 1.14e-33 125
MS.gene24631.t1 MTR_3g435460 36.493 211 107 7 127 333 63 250 5.83e-33 123
MS.gene24631.t1 MTR_8g023790 31.599 269 151 8 72 333 24 266 4.98e-32 121
MS.gene24631.t1 MTR_6g033320 37.931 203 101 7 127 328 56 234 2.45e-31 118
MS.gene24631.t1 MTR_3g435460 36.765 204 100 8 134 332 9 188 6.69e-30 113
MS.gene24631.t1 MTR_2g042720 36.406 217 107 6 127 334 72 266 4.22e-29 113
MS.gene24631.t1 MTR_4g015570 32.540 252 99 8 127 334 64 288 3.51e-24 100
MS.gene24631.t1 MTR_5g098770 53.333 75 35 0 258 332 17 91 3.05e-22 89.7
MS.gene24631.t1 MTR_2g436960 48.684 76 34 2 258 333 29 99 1.96e-17 77.0
MS.gene24631.t1 MTR_3g070340 31.197 234 90 8 127 316 67 273 9.56e-17 79.7
MS.gene24631.t1 MTR_0003s0060 45.333 75 36 2 258 332 22 91 5.38e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24631.t1 AT1G76570 70.447 291 82 3 44 334 41 327 5.04e-144 410
MS.gene24631.t1 AT3G27690 47.009 234 100 9 99 327 72 286 4.65e-55 182
MS.gene24631.t1 AT3G27690 47.009 234 100 9 99 327 40 254 5.03e-55 181
MS.gene24631.t1 AT2G05100 42.222 270 131 10 65 327 2 253 5.77e-54 178
MS.gene24631.t1 AT2G05070 45.690 232 106 8 99 327 39 253 1.11e-53 177
MS.gene24631.t1 AT1G29930 45.415 229 106 8 102 327 43 255 1.06e-50 170
MS.gene24631.t1 AT1G29920 45.415 229 106 8 102 327 43 255 1.10e-50 169
MS.gene24631.t1 AT1G29910 45.415 229 106 8 102 327 43 255 1.10e-50 169
MS.gene24631.t1 AT2G34430 44.872 234 110 8 97 327 37 254 5.12e-50 168
MS.gene24631.t1 AT2G34420 45.415 229 106 8 102 327 41 253 6.71e-50 167
MS.gene24631.t1 AT5G54270 42.411 224 113 5 106 327 44 253 2.09e-49 166
MS.gene24631.t1 AT2G05100 40.945 254 125 10 65 311 2 237 1.22e-42 150
MS.gene24631.t1 AT4G10340 43.498 223 107 5 109 329 62 267 7.71e-42 147
MS.gene24631.t1 AT1G45474 37.327 217 104 5 127 332 56 251 1.19e-36 133
MS.gene24631.t1 AT1G45474 37.327 217 104 5 127 332 56 251 1.19e-36 133
MS.gene24631.t1 AT1G61520 36.630 273 121 12 89 338 30 273 1.92e-34 127
MS.gene24631.t1 AT1G61520 36.630 273 121 12 89 338 30 273 1.92e-34 127
MS.gene24631.t1 AT3G54890 39.906 213 83 7 127 328 55 233 2.52e-34 126
MS.gene24631.t1 AT3G47470 33.471 242 131 8 96 333 36 251 8.30e-34 125
MS.gene24631.t1 AT1G19150 36.190 210 117 5 127 334 75 269 2.13e-31 119
MS.gene24631.t1 AT3G61470 34.450 209 120 5 127 333 62 255 3.88e-31 118
MS.gene24631.t1 AT1G61520 36.726 226 100 9 134 338 15 218 1.27e-30 115
MS.gene24631.t1 AT5G01530 33.083 266 102 10 114 334 55 289 1.35e-24 101
MS.gene24631.t1 AT3G08940 32.192 292 119 12 92 334 25 286 5.06e-24 100
MS.gene24631.t1 AT3G54890 32.900 231 85 9 99 328 38 199 3.83e-23 95.9
MS.gene24631.t1 AT3G54890 38.068 176 65 6 127 292 55 196 2.57e-20 88.2
MS.gene24631.t1 AT5G28450 47.368 76 39 1 259 333 96 171 1.23e-15 74.3
MS.gene24631.t1 AT2G40100 31.193 218 105 8 110 313 82 268 2.04e-14 72.8
MS.gene24631.t1 AT3G54890 52.830 53 25 0 127 179 55 107 1.78e-11 62.4

Find 0 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAAAAATAATTGAAAT+CGG - 6095:32636-32655 None:intergenic 10.0%
!! AAAGTGAAAGAAATAAAAAA+TGG + 6095:35697-35716 MS.gene24631:CDS 15.0%
!! TTAATGGTAAATTAAATGAA+AGG - 6095:32957-32976 None:intergenic 15.0%
!!! AGGAATTTTTTTAATGATTA+TGG + 6095:33449-33468 MS.gene24631:intron 15.0%
!!! ATTTTCTTAATTTCTTCAAA+TGG - 6095:34075-34094 None:intergenic 15.0%
!!! GGAATTTTTTTAATGATTAT+GGG + 6095:33450-33469 MS.gene24631:intron 15.0%
!!! TTATTAGATTTTTAACTTAG+TGG + 6095:35282-35301 MS.gene24631:intron 15.0%
!! AAATAAAAAGTTTCAGTAGT+TGG + 6095:35430-35449 MS.gene24631:intron 20.0%
!! AACCAAGTTATTAGATAAAT+AGG + 6095:34746-34765 MS.gene24631:intron 20.0%
!! ACCAAATAATTCTAATATTG+TGG - 6095:34665-34684 None:intergenic 20.0%
!! ACCAAGTTATTAGATAAATA+GGG + 6095:34747-34766 MS.gene24631:intron 20.0%
!! ACTCTTATTGTTAAATGTTA+AGG + 6095:34689-34708 MS.gene24631:intron 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG + 6095:33627-33646 MS.gene24631:intron 20.0%
!! ATAACATAACATAACCATAA+TGG - 6095:32884-32903 None:intergenic 20.0%
!! CAATTAATAAAGTGCAATAA+TGG - 6095:34896-34915 None:intergenic 20.0%
!! CTCTTATTGTTAAATGTTAA+GGG + 6095:34690-34709 MS.gene24631:intron 20.0%
!! TCCCATAATCATTAAAAAAA+GGG - 6095:33454-33473 None:intergenic 20.0%
!! TCTTATTGTTAAATGTTAAG+GGG + 6095:34691-34710 MS.gene24631:intron 20.0%
!!! AACCATAAATTTGTTTCTTT+TGG + 6095:35461-35480 MS.gene24631:intron 20.0%
!!! CTTGAATTTAAAGTGTATTT+TGG + 6095:34500-34519 MS.gene24631:intron 20.0%
!!! TCCCTTTTTTTAATGATTAT+GGG + 6095:33768-33787 MS.gene24631:intron 20.0%
!!! TTTTTTCCAATATTTGTCAA+CGG + 6095:34041-34060 MS.gene24631:intron 20.0%
! AAAAAATTCCTTATTCATGC+CGG - 6095:33440-33459 None:intergenic 25.0%
! AACAAACTTGTGTAAGATAA+AGG - 6095:33149-33168 None:intergenic 25.0%
! AATTATTGGTATAGGGATAA+GGG - 6095:34856-34875 None:intergenic 25.0%
! ACGGTAATATTATTTAAGAG+TGG - 6095:34265-34284 None:intergenic 25.0%
! ATTCTTATCATAAAACAGGT+TGG + 6095:35535-35554 MS.gene24631:intron 25.0%
! CATTCATTGTAAAAGTTTAC+CGG + 6095:33418-33437 MS.gene24631:intron 25.0%
! CTCCCATAATCATTAAAAAA+AGG - 6095:33455-33474 None:intergenic 25.0%
! CTTTCATAACTCATTTGTTT+GGG + 6095:35404-35423 MS.gene24631:intron 25.0%
! GAAAATGTTTAAGGAATGAT+AGG - 6095:32697-32716 None:intergenic 25.0%
! GCCACAATATTAGAATTATT+TGG + 6095:34661-34680 MS.gene24631:intron 25.0%
! GTCCAAAAGAAACAAATTTA+TGG - 6095:35466-35485 None:intergenic 25.0%
! TCCCTATTTATCTAATAACT+TGG - 6095:34751-34770 None:intergenic 25.0%
! TGATATGAGTTTATAAAGAG+AGG - 6095:33990-34009 None:intergenic 25.0%
!! AAGTTTTCAAACCTGTTATA+TGG + 6095:34171-34190 MS.gene24631:intron 25.0%
!! AATTTTCCCTTTCTAATTAG+TGG - 6095:33201-33220 None:intergenic 25.0%
!! CATTTTCCACTAATTAGAAA+GGG + 6095:33192-33211 MS.gene24631:intron 25.0%
!! TTTTTACGAAGCAAATAAAC+TGG + 6095:34979-34998 MS.gene24631:intron 25.0%
!!! CTCCCTTTTTTTAATGATTA+TGG + 6095:33767-33786 MS.gene24631:intron 25.0%
!!! GATTTTTAACTTAGTGGTAT+TGG + 6095:35288-35307 MS.gene24631:intron 25.0%
ACAAAACTCCTCTAAATTCA+AGG + 6095:32575-32594 MS.gene24631:CDS 30.0%
ACATAGATGCCAAATATCAT+CGG + 6095:33558-33577 MS.gene24631:intron 30.0%
ACATCATCACTAACATCATA+TGG - 6095:35246-35265 None:intergenic 30.0%
AGAAATAAAAAATGGACGCT+TGG + 6095:35705-35724 MS.gene24631:CDS 30.0%
AGCTAAATTTATTCTCATGC+AGG - 6095:34940-34959 None:intergenic 30.0%
AGCTACTGTTACTACTAATT+TGG + 6095:35511-35530 MS.gene24631:intron 30.0%
ATAACATAACCATAATGGCT+TGG - 6095:32879-32898 None:intergenic 30.0%
ATAGATGCCAAATATCATCA+GGG + 6095:33560-33579 MS.gene24631:intron 30.0%
CATATTTCCCTGATGATATT+TGG - 6095:33570-33589 None:intergenic 30.0%
CATCATCACTAACATCATAT+GGG - 6095:35245-35264 None:intergenic 30.0%
CATCTTGTAATGAGAAAGAA+AGG - 6095:33498-33517 None:intergenic 30.0%
CCAAAAGCTGAAAATGTTTA+AGG - 6095:32706-32725 None:intergenic 30.0%
CCTTTCTAATTAGTGGAAAA+TGG - 6095:33194-33213 None:intergenic 30.0%
CTCTTTATAAGACTTAGAGT+GGG - 6095:34335-34354 None:intergenic 30.0%
GAATTATTGGTATAGGGATA+AGG - 6095:34857-34876 None:intergenic 30.0%
GCCAAAGAATTATTGGTATA+GGG - 6095:34863-34882 None:intergenic 30.0%
GCTACTGTTACTACTAATTT+GGG + 6095:35512-35531 MS.gene24631:intron 30.0%
GCTTTCATAACTCATTTGTT+TGG + 6095:35403-35422 MS.gene24631:intron 30.0%
TAACATAACCATAATGGCTT+GGG - 6095:32878-32897 None:intergenic 30.0%
TACAAATCGAACATTTCTCA+TGG + 6095:35333-35352 MS.gene24631:intron 30.0%
TAGATAAATAGGGATGCTAA+AGG + 6095:34757-34776 MS.gene24631:intron 30.0%
TCCCTATACCAATAATTCTT+TGG + 6095:34859-34878 MS.gene24631:intron 30.0%
TGCAATATCTCAAAGCTTAA+TGG - 6095:32973-32992 None:intergenic 30.0%
TGCCAAAGAATTATTGGTAT+AGG - 6095:34864-34883 None:intergenic 30.0%
TGGGAGATACAAATATAACA+TGG + 6095:33787-33806 MS.gene24631:intron 30.0%
TGGGATTCTTATCATAAAAC+AGG + 6095:35531-35550 MS.gene24631:intron 30.0%
TGTCAGTTAGTTATAAAGAG+AGG - 6095:33671-33690 None:intergenic 30.0%
TTTCAAACCTGTTATATGGT+GGG + 6095:34175-34194 MS.gene24631:intron 30.0%
! AAACATACGAAAGCATATCA+CGG - 6095:34284-34303 None:intergenic 30.0%
! AACATTTTCAGCTTTTGGTA+TGG + 6095:32708-32727 MS.gene24631:intron 30.0%
! ATATGATGTTAGTGATGATG+TGG + 6095:35245-35264 MS.gene24631:intron 30.0%
! ATCAATTGTGTGCTTTGTTA+TGG + 6095:34112-34131 MS.gene24631:intron 30.0%
! CATGAGAATAAATTTAGCTC+AGG + 6095:34941-34960 MS.gene24631:intron 30.0%
! CCATTTTCCACTAATTAGAA+AGG + 6095:33191-33210 MS.gene24631:intron 30.0%
! CCTTAAACATTTTCAGCTTT+TGG + 6095:32703-32722 MS.gene24631:intron 30.0%
! TCAATTGTGTGCTTTGTTAT+GGG + 6095:34113-34132 MS.gene24631:intron 30.0%
! TTAGTGGTATTGGATGTATT+GGG + 6095:35298-35317 MS.gene24631:intron 30.0%
! TTTTCAAACCTGTTATATGG+TGG + 6095:34174-34193 MS.gene24631:intron 30.0%
!! AGAAAGTGCCAAAGAATTAT+TGG - 6095:34870-34889 None:intergenic 30.0%
AAACAAGATGAAGAAGAGGA+AGG - 6095:32342-32361 None:intergenic 35.0%
AAAGTTTACCGGCATGAATA+AGG + 6095:33429-33448 MS.gene24631:intron 35.0%
AAAGTTTACCGGCATGAATT+TGG + 6095:33740-33759 MS.gene24631:intron 35.0%
AACGAAACAAGATGAAGAAG+AGG - 6095:32346-32365 None:intergenic 35.0%
AAGTCCCACATTGGAAATAT+AGG - 6095:34018-34037 None:intergenic 35.0%
AAGTTAGTGACAATTTCGAC+AGG - 6095:34405-34424 None:intergenic 35.0%
AGAGAATTGATAGGCTCAAT+AGG + 6095:33702-33721 MS.gene24631:intron 35.0%
AGAGAATTGATAGGCTCATA+AGG + 6095:33636-33655 MS.gene24631:intron 35.0%
AGAGTCCTATATTTCCAATG+TGG + 6095:34010-34029 MS.gene24631:intron 35.0%
AGGATCTTTGGACAGATTTA+AGG - 6095:35659-35678 None:intergenic 35.0%
ATAATATTAGCAGAGCTCAC+AGG - 6095:35184-35203 None:intergenic 35.0%
ATAGATGCCAAATATCATCG+GGG + 6095:33879-33898 MS.gene24631:intron 35.0%
ATATTTCCAATGTGGGACTT+GGG + 6095:34018-34037 MS.gene24631:intron 35.0%
CATAGATGCCAAATATCATC+AGG + 6095:33559-33578 MS.gene24631:intron 35.0%
CATAGATGCCAAATATCATC+GGG + 6095:33559-33578 MS.gene24631:intron 35.0%
CATATTTCCCCGATGATATT+TGG - 6095:33889-33908 None:intergenic 35.0%
CCTCTTTATAAGACTTAGAG+TGG - 6095:34336-34355 None:intergenic 35.0%
CCTGAGTTATTAGACCTATT+GGG + 6095:33033-33052 MS.gene24631:CDS 35.0%
CTATAGCTAACAGTCCATTA+GGG + 6095:32508-32527 MS.gene24631:CDS 35.0%
CTCTCATTTCATCGACAATA+GGG + 6095:33392-33411 MS.gene24631:intron 35.0%
CTTATCAGTTAGTTATGCAG+TGG - 6095:33926-33945 None:intergenic 35.0%
GAGAATTGATAGGCTCAATA+GGG + 6095:33703-33722 MS.gene24631:intron 35.0%
GAGTCCTATATTTCCAATGT+GGG + 6095:34011-34030 MS.gene24631:intron 35.0%
GGAGTCACTTCAAAGAAAAA+TGG + 6095:32530-32549 MS.gene24631:CDS 35.0%
GGATCTTTGGACAGATTTAA+GGG - 6095:35658-35677 None:intergenic 35.0%
GTAGTACCGTTGACAAATAT+TGG - 6095:34050-34069 None:intergenic 35.0%
GTATCAAGCTTAAGCTACAA+GGG + 6095:34634-34653 MS.gene24631:intron 35.0%
GTTAAATGTTAAGGGGCTAA+TGG + 6095:34698-34717 MS.gene24631:intron 35.0%
TATAGCTAACAGTCCATTAG+GGG + 6095:32509-32528 MS.gene24631:CDS 35.0%
TATATTTCCAATGTGGGACT+TGG + 6095:34017-34036 MS.gene24631:intron 35.0%
TATCAAGCTTAAGCTACAAG+GGG + 6095:34635-34654 MS.gene24631:intron 35.0%
TATTTGCCAAGTACTCCTTA+TGG + 6095:35130-35149 MS.gene24631:CDS 35.0%
TCCTGAGTTATTAGACCTAT+TGG + 6095:33032-33051 MS.gene24631:CDS 35.0%
TCGACAACACTACATAGAAT+TGG + 6095:34239-34258 MS.gene24631:intron 35.0%
TCTCTCATTTCATCGACAAT+AGG + 6095:33391-33410 MS.gene24631:intron 35.0%
TGGATACAAGCATTACCATA+AGG - 6095:35148-35167 None:intergenic 35.0%
TGGGAGATGCAAATATAACA+TGG + 6095:33469-33488 MS.gene24631:intron 35.0%
TGTATCAAGCTTAAGCTACA+AGG + 6095:34633-34652 MS.gene24631:intron 35.0%
TTCAAAAGCTTCAGGATCTT+TGG - 6095:35671-35690 None:intergenic 35.0%
TTCAAACCTGTTATATGGTG+GGG + 6095:34176-34195 MS.gene24631:intron 35.0%
TTCACTTTGTTGAACCTGTT+TGG + 6095:33061-33080 MS.gene24631:CDS 35.0%
TTTCGACAGGATAACAGTAT+TGG - 6095:34392-34411 None:intergenic 35.0%
! AAATATTTCTGCAGTTCCAC+TGG - 6095:32846-32865 None:intergenic 35.0%
! CCACTCTAAGTCTTATAAAG+AGG + 6095:34333-34352 MS.gene24631:intron 35.0%
! CTTAGTGGTATTGGATGTAT+TGG + 6095:35297-35316 MS.gene24631:intron 35.0%
! GTTCGATTTGTAGAATCGAA+AGG - 6095:35325-35344 None:intergenic 35.0%
! TCTTCATCTTGTTTCGTTAG+TGG + 6095:32348-32367 MS.gene24631:CDS 35.0%
! TGATCCACAATGTTTTGTAC+AGG - 6095:35784-35803 None:intergenic 35.0%
! TGTTATATGGTGGGGAAAAA+GGG + 6095:34184-34203 MS.gene24631:intron 35.0%
!!! TATTTTGGTATTCACCCTTG+TGG + 6095:34515-34534 MS.gene24631:intron 35.0%
AAAAAACCCAAGTCCCACAT+TGG - 6095:34027-34046 None:intergenic 40.0%
AAAGCAGTTTACAGAGGAGA+GGG - 6095:32388-32407 None:intergenic 40.0%
AATCAGAAAACTGCACTCTC+AGG - 6095:34601-34620 None:intergenic 40.0%
ACTTTGTTGAACCTGTTTGG+TGG + 6095:33064-33083 MS.gene24631:CDS 40.0%
AGAGATAGAACATGCTAACC+TGG - 6095:33110-33129 None:intergenic 40.0%
AGGAATACAGATGTCCACAA+GGG - 6095:34532-34551 None:intergenic 40.0%
AGGTCCTGTACAAAACATTG+TGG + 6095:35777-35796 MS.gene24631:CDS 40.0%
AGTCTTCCAATTTCTGACAG+GGG + 6095:35039-35058 MS.gene24631:intron 40.0%
AGTTCCCCAATGAGATATGA+TGG - 6095:32780-32799 None:intergenic 40.0%
ATATTGTGGGATTGAAGCAC+TGG + 6095:35573-35592 MS.gene24631:CDS 40.0%
ATCAGAAAACTGCACTCTCA+GGG - 6095:34600-34619 None:intergenic 40.0%
ATCTCATCTGCAATGCTTCA+TGG + 6095:32430-32449 MS.gene24631:CDS 40.0%
ATTGATAGGCTCATAAGGTG+AGG + 6095:33641-33660 MS.gene24631:intron 40.0%
CAAAGTGAAAGACTCCCAAT+AGG - 6095:33050-33069 None:intergenic 40.0%
CAAGTTGTTGTGGAAAGGAT+CGG - 6095:35812-35831 None:intergenic 40.0%
CAGAATACGCCAGATATTGT+GGG + 6095:35560-35579 MS.gene24631:intron 40.0%
CAGATGAGATGTTGTGTTCT+GGG - 6095:32420-32439 None:intergenic 40.0%
CATCTGTATTCCTGTGTGTA+AGG + 6095:34539-34558 MS.gene24631:intron 40.0%
CCCAATAGGTCTAATAACTC+AGG - 6095:33036-33055 None:intergenic 40.0%
CTACCCATCATATCTCATTG+GGG + 6095:32773-32792 MS.gene24631:CDS 40.0%
CTTATCAGTTAGCTATGCAG+TGG - 6095:33607-33626 None:intergenic 40.0%
GAAAGGACAAGAGAGAAAGA+CGG - 6095:34834-34853 None:intergenic 40.0%
GAAGCTATTCAGTTCACTTC+TGG + 6095:34308-34327 MS.gene24631:intron 40.0%
GAGTCTTCCAATTTCTGACA+GGG + 6095:35038-35057 MS.gene24631:intron 40.0%
GCTACCCATCATATCTCATT+GGG + 6095:32772-32791 MS.gene24631:CDS 40.0%
GCTATAGCTAACAGTCCATT+AGG + 6095:32507-32526 MS.gene24631:CDS 40.0%
GGTAGCCATCATACGAAATA+GGG - 6095:32758-32777 None:intergenic 40.0%
GTTAGGTTTCTTCACACAAG+CGG + 6095:35741-35760 MS.gene24631:CDS 40.0%
GTTCCCCAATGAGATATGAT+GGG - 6095:32779-32798 None:intergenic 40.0%
TCAGTTAGTTATGCAGTGGT+AGG - 6095:33922-33941 None:intergenic 40.0%
TGAGTCTTCCAATTTCTGAC+AGG + 6095:35037-35056 MS.gene24631:intron 40.0%
TGCTTCAATCCCACAATATC+TGG - 6095:35572-35591 None:intergenic 40.0%
TTCAGCTCTTCAAAAGCTTC+AGG - 6095:35679-35698 None:intergenic 40.0%
TTGGTATAGGGATAAGGGAA+AGG - 6095:34851-34870 None:intergenic 40.0%
TTTCAAGAGAACACCTACGA+AGG - 6095:35367-35386 None:intergenic 40.0%
! CATGGCTTTTAATCCTTCGT+AGG + 6095:35351-35370 MS.gene24631:intron 40.0%
! CTGTTATATGGTGGGGAAAA+AGG + 6095:34183-34202 MS.gene24631:intron 40.0%
! CTTTCCACAACAACTTGCTT+GGG + 6095:35815-35834 MS.gene24631:CDS 40.0%
! CTTTTTCCCCACCATATAAC+AGG - 6095:34185-34204 None:intergenic 40.0%
! GGTTTGAACATCTGTTGGTT+AGG - 6095:34571-34590 None:intergenic 40.0%
! TTCAGCTTTTGGTATGGACA+AGG + 6095:32714-32733 MS.gene24631:intron 40.0%
! TTGAACATCTGTTGGTTAGG+AGG - 6095:34568-34587 None:intergenic 40.0%
!! ACACTTTTCAGGATCAGCAT+GGG - 6095:33292-33311 None:intergenic 40.0%
!! AGATGTTGTGTTCTGGGTTT+TGG - 6095:32414-32433 None:intergenic 40.0%
!! ATAGCTTTGACAGCAGTGAA+AGG - 6095:32492-32511 None:intergenic 40.0%
!! ATGTTGTGTTCTGGGTTTTG+GGG - 6095:32412-32431 None:intergenic 40.0%
!! CTGATCCTGAAAAGTGTCAT+GGG + 6095:33295-33314 MS.gene24631:intron 40.0%
!! GATGTTGTGTTCTGGGTTTT+GGG - 6095:32413-32432 None:intergenic 40.0%
!! GATTATGGCTTTGACATTGC+TGG + 6095:32807-32826 MS.gene24631:CDS 40.0%
!! GCATTACCATAAGGAGTACT+TGG - 6095:35139-35158 None:intergenic 40.0%
AAACTGCACTCTCAGGGAAT+CGG - 6095:34594-34613 None:intergenic 45.0%
AAATGGACGCTTGGCAATGA+TGG + 6095:35714-35733 MS.gene24631:CDS 45.0%
AAGTACCACCCAAGCCATTA+TGG + 6095:32867-32886 MS.gene24631:intron 45.0%
AGCCTGAGCCTTGAATTTAG+AGG - 6095:32586-32605 None:intergenic 45.0%
AGTATCCCCCTGTCAGAAAT+TGG - 6095:35048-35067 None:intergenic 45.0%
ATCGGGGTTTGAACATCTGT+TGG - 6095:34576-34595 None:intergenic 45.0%
ATGTCAAAGCCATAATCCCC+AGG - 6095:32804-32823 None:intergenic 45.0%
CAAAGCAGTTTACAGAGGAG+AGG - 6095:32389-32408 None:intergenic 45.0%
CAGGAATACAGATGTCCACA+AGG - 6095:34533-34552 None:intergenic 45.0%
CCAAGCAAGTTGTTGTGGAA+AGG - 6095:35817-35836 None:intergenic 45.0%
CCACAATATCTGGCGTATTC+TGG - 6095:35562-35581 None:intergenic 45.0%
CCAGAATACGCCAGATATTG+TGG + 6095:35559-35578 MS.gene24631:intron 45.0%
CCAGGCAGATATATTCCTAG+AGG - 6095:35601-35620 None:intergenic 45.0%
CCAGGGTAGTTTATATCACC+AGG - 6095:35619-35638 None:intergenic 45.0%
CCTGGTGATATAAACTACCC+TGG + 6095:35616-35635 MS.gene24631:CDS 45.0%
CTCCTCTAAATTCAAGGCTC+AGG + 6095:32581-32600 MS.gene24631:CDS 45.0%
CTTGGCCCTATTTCGTATGA+TGG + 6095:32750-32769 MS.gene24631:CDS 45.0%
GATCAAACAATGCTCCTCCA+GGG - 6095:35636-35655 None:intergenic 45.0%
GCAGATGAGATGTTGTGTTC+TGG - 6095:32421-32440 None:intergenic 45.0%
GGAGATGACCAAATTCATGC+CGG - 6095:33751-33770 None:intergenic 45.0%
GGCTACCCATCATATCTCAT+TGG + 6095:32771-32790 MS.gene24631:CDS 45.0%
GGGGATACTCTAGATTACCT+TGG + 6095:35059-35078 MS.gene24631:CDS 45.0%
GGGTAGCCATCATACGAAAT+AGG - 6095:32759-32778 None:intergenic 45.0%
GGTGAACAGTACACATACCT+GGG - 6095:34371-34390 None:intergenic 45.0%
GGTGATATAAACTACCCTGG+AGG + 6095:35619-35638 MS.gene24631:CDS 45.0%
GTCTTCCAATTTCTGACAGG+GGG + 6095:35040-35059 MS.gene24631:intron 45.0%
GTTAGTTATGCAGTGGTAGG+CGG - 6095:33919-33938 None:intergenic 45.0%
TCACAGGACAAGGTGGATAA+TGG - 6095:35168-35187 None:intergenic 45.0%
TCAGTTAGCTATGCAGTGGT+AGG - 6095:33603-33622 None:intergenic 45.0%
TGAGATATTGCATGCTCGCT+GGG + 6095:32981-33000 MS.gene24631:CDS 45.0%
TGGTGAACAGTACACATACC+TGG - 6095:34372-34391 None:intergenic 45.0%
TTGAGATATTGCATGCTCGC+TGG + 6095:32980-32999 MS.gene24631:CDS 45.0%
! CATAACCATAATGGCTTGGG+TGG - 6095:32875-32894 None:intergenic 45.0%
! CATATGGGCTCAAAGAGTAC+TGG - 6095:35230-35249 None:intergenic 45.0%
! CCTCTAGGAATATATCTGCC+TGG + 6095:35598-35617 MS.gene24631:CDS 45.0%
! CCTTTCCACAACAACTTGCT+TGG + 6095:35814-35833 MS.gene24631:CDS 45.0%
! GAACTCCCATGACACTTTTC+AGG - 6095:33303-33322 None:intergenic 45.0%
! GCTTTTGGTATGGACAAGGT+CGG + 6095:32718-32737 MS.gene24631:intron 45.0%
!! CTTTGAAGTGACTCCCCTAA+TGG - 6095:32525-32544 None:intergenic 45.0%
!! GACACTTTTCAGGATCAGCA+TGG - 6095:33293-33312 None:intergenic 45.0%
!! GCTGATCCTGAAAAGTGTCA+TGG + 6095:33294-33313 MS.gene24631:intron 45.0%
!! GTTAAGGGGCTAATGGACTT+GGG + 6095:34705-34724 MS.gene24631:intron 45.0%
!! TGTTAAGGGGCTAATGGACT+TGG + 6095:34704-34723 MS.gene24631:intron 45.0%
!! TTGGCAATGATGGCTTGGTT+AGG + 6095:35724-35743 MS.gene24631:CDS 45.0%
AACTGCACTCTCAGGGAATC+GGG - 6095:34593-34612 None:intergenic 50.0%
ATCTCATTGGGGAACTGCCT+GGG + 6095:32784-32803 MS.gene24631:CDS 50.0%
CAGTCATTTGCGTCTGCAGA+TGG + 6095:35485-35504 MS.gene24631:intron 50.0%
CTAGATTACCTTGGCATCCC+AGG + 6095:35068-35087 MS.gene24631:CDS 50.0%
CTTCACTTAGCTGGAAGCCA+GGG + 6095:35092-35111 MS.gene24631:CDS 50.0%
GAACAGTACACATACCTGGG+AGG - 6095:34368-34387 None:intergenic 50.0%
GAACATGCTAACCTGGAGCT+TGG - 6095:33103-33122 None:intergenic 50.0%
GGATCAAACAATGCTCCTCC+AGG - 6095:35637-35656 None:intergenic 50.0%
GTGACCCAAGCAAGTTGTTG+TGG - 6095:35822-35841 None:intergenic 50.0%
GTTAGCTATGCAGTGGTAGG+CGG - 6095:33600-33619 None:intergenic 50.0%
TAGCAATCACAACCACTCCC+TGG - 6095:35112-35131 None:intergenic 50.0%
TATCTCATTGGGGAACTGCC+TGG + 6095:32783-32802 MS.gene24631:CDS 50.0%
TGGGCTATGCTTGCATCTGT+TGG + 6095:33000-33019 MS.gene24631:CDS 50.0%
TGGGGCAAAGCAGTTTACAG+AGG - 6095:32394-32413 None:intergenic 50.0%
TTAGCAGAGCTCACAGGACA+AGG - 6095:35178-35197 None:intergenic 50.0%
TTCCAGCTAAGTGAAGGCCT+GGG - 6095:35088-35107 None:intergenic 50.0%
! CGGTCACTACCTCTGTTTTC+TGG - 6095:32616-32635 None:intergenic 50.0%
! CGTTGGTTATTCCAAGCTCC+AGG + 6095:33089-33108 MS.gene24631:CDS 50.0%
!! ATTGAAGCACTGGAGCCTCT+AGG + 6095:35583-35602 MS.gene24631:CDS 50.0%
!! CTACCTCTGTTTTCTGGCCT+TGG - 6095:32610-32629 None:intergenic 50.0%
ACTGCACTCTCAGGGAATCG+GGG - 6095:34592-34611 None:intergenic 55.0%
AGAGGTTGTTTGCTCCTCCC+AGG + 6095:34351-34370 MS.gene24631:intron 55.0%
ATCCCAGGCCTTCACTTAGC+TGG + 6095:35083-35102 MS.gene24631:CDS 55.0%
ATTCAAGGCTCAGGCTGCCA+AGG + 6095:32590-32609 MS.gene24631:CDS 55.0%
CCTGGCTTCCAGCTAAGTGA+AGG - 6095:35094-35113 None:intergenic 55.0%
CCTTCACTTAGCTGGAAGCC+AGG + 6095:35091-35110 MS.gene24631:CDS 55.0%
CTGCAGTTCCACTGGATCCT+TGG - 6095:32838-32857 None:intergenic 55.0%
CTGCCAAGGCCAGAAAACAG+AGG + 6095:32604-32623 MS.gene24631:CDS 55.0%
CTTCCAGCTAAGTGAAGGCC+TGG - 6095:35089-35108 None:intergenic 55.0%
GAAATAGGGCCAAGCCAACG+AGG - 6095:32744-32763 None:intergenic 55.0%
GACGCTTGGCAATGATGGCT+TGG + 6095:35719-35738 MS.gene24631:CDS 55.0%
GCTTCATGGCAAGAGCTTGC+TGG + 6095:32444-32463 MS.gene24631:CDS 55.0%
GTTCCACTGGATCCTTGGCA+AGG - 6095:32833-32852 None:intergenic 55.0%
TAACCAACGCGCCACCAAAC+AGG - 6095:33078-33097 None:intergenic 55.0%
TAGGAGGTCGCCTTACACAC+AGG - 6095:34552-34571 None:intergenic 55.0%
TCTCATTGGGGAACTGCCTG+GGG + 6095:32785-32804 MS.gene24631:CDS 55.0%
! CTTCACACAAGCGGCACTGA+CGG + 6095:35750-35769 MS.gene24631:CDS 55.0%
!! TGACATTGCTGGCCTTGCCA+AGG + 6095:32818-32837 MS.gene24631:CDS 55.0%
!! TTCACACAAGCGGCACTGAC+GGG + 6095:35751-35770 MS.gene24631:CDS 55.0%
AGTGAAGGCCTGGGATGCCA+AGG - 6095:35079-35098 None:intergenic 60.0%
ATGGACAAGGTCGGCCTCGT+TGG + 6095:32727-32746 MS.gene24631:CDS 60.0%
CTTAGCTGGAAGCCAGGGAG+TGG + 6095:35097-35116 MS.gene24631:CDS 60.0%
GCAGAGCTCACAGGACAAGG+TGG - 6095:35175-35194 None:intergenic 60.0%
GGGGAACTGCCTGGGGATTA+TGG + 6095:32792-32811 MS.gene24631:CDS 60.0%
! TGGCCTTGCCAAGGATCCAG+TGG + 6095:32827-32846 MS.gene24631:CDS 60.0%
!! CAAGCGGCACTGACGGGTAA+AGG + 6095:35757-35776 MS.gene24631:CDS 60.0%
!! GAACCTGTTTGGTGGCGCGT+TGG + 6095:33072-33091 MS.gene24631:CDS 60.0%
! CAAGGTCGGCCTCGTTGGCT+TGG + 6095:32732-32751 MS.gene24631:CDS 65.0%


Chromosome Type Strat End Strand Name
6095 gene 32306 35864 32306 ID=MS.gene24631
6095 mRNA 32306 35864 32306 ID=MS.gene24631.t1;Parent=MS.gene24631
6095 exon 32306 32625 32306 ID=MS.gene24631.t1.exon1;Parent=MS.gene24631.t1
6095 CDS 32306 32625 32306 ID=cds.MS.gene24631.t1;Parent=MS.gene24631.t1
6095 exon 32719 32868 32719 ID=MS.gene24631.t1.exon2;Parent=MS.gene24631.t1
6095 CDS 32719 32868 32719 ID=cds.MS.gene24631.t1;Parent=MS.gene24631.t1
6095 exon 32978 33110 32978 ID=MS.gene24631.t1.exon3;Parent=MS.gene24631.t1
6095 CDS 32978 33110 32978 ID=cds.MS.gene24631.t1;Parent=MS.gene24631.t1
6095 exon 34760 34778 34760 ID=MS.gene24631.t1.exon4;Parent=MS.gene24631.t1
6095 CDS 34760 34778 34760 ID=cds.MS.gene24631.t1;Parent=MS.gene24631.t1
6095 exon 35059 35151 35059 ID=MS.gene24631.t1.exon5;Parent=MS.gene24631.t1
6095 CDS 35059 35151 35059 ID=cds.MS.gene24631.t1;Parent=MS.gene24631.t1
6095 exon 35563 35864 35563 ID=MS.gene24631.t1.exon6;Parent=MS.gene24631.t1
6095 CDS 35563 35864 35563 ID=cds.MS.gene24631.t1;Parent=MS.gene24631.t1
Gene Sequence

>MS.gene24631

ATGGTGTGGCTTCAACTTCAATCAGTGACGTGTCCTTCCTCTTCTTCATCTTGTTTCGTTAGTGGCTCTAGTCGCTGCTCCCTCTCCTCTGTAAACTGCTTTGCCCCAAAACCCAGAACACAACATCTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCTGTCAAAGCTATAGCTAACAGTCCATTAGGGGAGTCACTTCAAAGAAAAATGGAAGAGACTAAGCAACTTGCTGTACAAAACTCCTCTAAATTCAAGGCTCAGGCTGCCAAGGCCAGAAAACAGAGGTAGTGACCGATTTCAATTATTTTTATTCTCATTGCTGCTGCTGCTGCATCAATGAATTGTGCTCATTCCTATCATTCCTTAAACATTTTCAGCTTTTGGTATGGACAAGGTCGGCCTCGTTGGCTTGGCCCTATTTCGTATGATGGCTACCCATCATATCTCATTGGGGAACTGCCTGGGGATTATGGCTTTGACATTGCTGGCCTTGCCAAGGATCCAGTGGAACTGCAGAAATATTTCAAGTACCACCCAAGCCATTATGGTTATGTTATGTTATTATTATTGCTTCTTGAATTTTTCATTTAAATAGTTAAATAGTTAACTTGTCCTTTCATTTAATTTACCATTAAGCTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTCTCATTCCTGAGTTATTAGACCTATTGGGAGTCTTTCACTTTGTTGAACCTGTTTGGTGGCGCGTTGGTTATTCCAAGCTCCAGGTTAGCATGTTCTATCTCTCTTATCTATTTGTTCACCTTTATCTTACACAAGTTTGTTCAATTAATAATATAATTACAGTCCATTTTCCACTAATTAGAAAGGGAAAATTGTGTCTTGTTTAACAATTTCAGAAAGCTACAAATGCTCTATGACATTGCTAGTTTGCAAATGAGTATTCCCATGCTGATCCTGAAAAGTGTCATGGGAGTTCAAAAATTAATTGTAGTTTTTCACTTCTTGTGTCTTGTAGTAGTTTGTTTGATCATATTGTTGTTTTTATCTCTCATTTCATCGACAATAGGGTAGCATTCATTGTAAAAGTTTACCGGCATGAATAAGGAATTTTTTTAATGATTATGGGAGATGCAAATATAACATGGCAACCTTTCTTTCTCATTACAAGATGATCTCATGTTCTTAAGAAAAAGAAAATCTATACGCTAAGAACATAGATGCCAAATATCATCAGGGAAATATGTCTTTGTCCGCCTACCACTGCATAGCTAACTGATAAGAGTTTATAAAGAGAATTGATAGGCTCATAAGGTGAGGAGTGCCTCTCTTTATAACTAACTGACAAGAGTTTATAAAGAGAATTGATAGGCTCAATAGGGTAGCATTCATTGTAAAAGTTTACCGGCATGAATTTGGTCATCTCCCTTTTTTTAATGATTATGGGAGATACAAATATAACATGGCAACCTTTCTTTCTCATTACAAGATGATCTCATGTTCTTAAGAAAAAAGAAAATCTATACGCTAAGAACATAGATGCCAAATATCATCGGGGAAATATGTCTTTGTCCGCCTACCACTGCATAACTAACTGATAAGAGTTTATAAAGAGAATTGATAGGCTCATAAGGTGAGGAGTGCCTCTCTTTATAAACTCATATCAAGAGTCCTATATTTCCAATGTGGGACTTGGGTTTTTTCCAATATTTGTCAACGGTACTACGACCATTTGAAGAAATTAAGAAAATAGTAATCAGTTTTGATTATCAATTGTGTGCTTTGTTATGGGCAGCATTTTGAACACAACATCTTAGCAAACATAATAAGTTTTCAAACCTGTTATATGGTGGGGAAAAAGGGTCAAAGTGTCTTTGCTAACGATATTCAAAAGTTCGACAACACTACATAGAATTGGCCACTCTTAAATAATATTACCGTGATATGCTTTCGTATGTTTCTAAGAAGCTATTCAGTTCACTTCTGGTCCCACTCTAAGTCTTATAAAGAGGTTGTTTGCTCCTCCCAGGTATGTGTACTGTTCACCAATACTGTTATCCTGTCGAAATTGTCACTAACTTGAGTGTCAAAGTGTATCTTATCGAAATTCTCACAAACTTGAGTATCAAAGTGTATCTTATCGAAATTCTCACTAACTTGAATTTAAAGTGTATTTTGGTATTCACCCTTGTGGACATCTGTATTCCTGTGTGTAAGGCGACCTCCTAACCAACAGATGTTCAAACCCCGATTCCCTGAGAGTGCAGTTTTCTGATTGACTTTGATGCTTGTATCAAGCTTAAGCTACAAGGGGAGTGCCACAATATTAGAATTATTTGGTTATTACTCTTATTGTTAAATGTTAAGGGGCTAATGGACTTGGGCTTATAGTACTAGCACTTAACCAAGTTATTAGATAAATAGGGATGCTAAAGGTTAGTGTTTTGTTTCACATTACATCTTTCATTATACTTTCAGCATACTGAACCGTCTTTCTCTCTTGTCCTTTCCCTTATCCCTATACCAATAATTCTTTGGCACTTTCTTTTCCATTATTGCACTTTATTAATTGAAACTAGTTGATAAATTTTTACCTGCATGAGAATAAATTTAGCTCAGGCTGATGTTGTATACTTTTTTACGAAGCAAATAAACTGGTGAGTTGTAATAATGCAATTGACACTTGTTACTTATGAGTCTTCCAATTTCTGACAGGGGGATACTCTAGATTACCTTGGCATCCCAGGCCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTAATGCTTGTATCCATTATCCACCTTGTCCTGTGAGCTCTGCTAATATTATTTATATCTTGTGACACTTGTCTTCCAGTACTCTTTGAGCCCATATGATGTTAGTGATGATGTGGCGTAGCACTACTAATTATTAGATTTTTAACTTAGTGGTATTGGATGTATTGGGACCTTTCGATTCTACAAATCGAACATTTCTCATGGCTTTTAATCCTTCGTAGGTGTTCTCTTGAAATTAAAGAAGTTAATTTGCTTTCATAACTCATTTGTTTGGGCTAAAATAAAAAGTTTCAGTAGTTGGAGCTGCTTAACCATAAATTTGTTTCTTTTGGACAGTCATTTGCGTCTGCAGATGGATTAGCTACTGTTACTACTAATTTGGGATTCTTATCATAAAACAGGTTGGACCAGAATACGCCAGATATTGTGGGATTGAAGCACTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCATTGTTTGATCCCTTAAATCTGTCCAAAGATCCTGAAGCTTTTGAAGAGCTGAAAGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGTTTCTTCACACAAGCGGCACTGACGGGTAAAGGTCCTGTACAAAACATTGTGGATCATATCTCCGATCCTTTCCACAACAACTTGCTTGGGTCACTCAATTCAATGAAATTACACTAG

Protein sequence

>MS.gene24631.t1

MVWLQLQSVTCPSSSSSCFVSGSSRCSLSSVNCFAPKPRTQHLICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEETKQLAVQNSSKFKAQAAKARKQSFWYGQGRPRWLGPISYDGYPSYLIGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFVEPVWWRVGYSKLQINRDAKGGYSRLPWHPRPSLSWKPGSGCDCYLPSTPYEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHISDPFHNNLLGSLNSMKLH