Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069712.t1 | XP_003591062.1 | 92.7 | 150 | 7 | 1 | 1 | 150 | 144 | 289 | 1.80E-67 | 265.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069712.t1 | Q9ZVL6 | 81.3 | 150 | 24 | 1 | 1 | 150 | 140 | 285 | 5.5e-65 | 248.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069712.t1 | G7I7H7 | 92.7 | 150 | 7 | 1 | 1 | 150 | 144 | 289 | 1.3e-67 | 265.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene069712 | 0.819089 | 1.39E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene069712 | 0.808187 | 3.50E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene069712 | 0.841387 | 4.90E-58 | -1.69E-46 |
| MS.gene049369 | MS.gene069712 | 0.83452 | 2.86E-56 | -1.69E-46 |
| MS.gene049396 | MS.gene069712 | 0.815831 | 7.56E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene069712 | 0.804209 | 2.41E-49 | -1.69E-46 |
| MS.gene049488 | MS.gene069712 | 0.803352 | 3.63E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene069712 | 0.883277 | 5.14E-71 | -1.69E-46 |
| MS.gene049633 | MS.gene069712 | 0.803444 | 3.48E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene069712 | 0.822027 | 2.95E-53 | -1.69E-46 |
| MS.gene049662 | MS.gene069712 | 0.811563 | 6.58E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene069712 | 0.822666 | 2.10E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene069712 | 0.860275 | 2.31E-63 | -1.69E-46 |
| MS.gene050096 | MS.gene069712 | -0.811325 | 7.41E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene069712 | 0.811465 | 6.91E-51 | -1.69E-46 |
| MS.gene050432 | MS.gene069712 | 0.830453 | 2.91E-55 | -1.69E-46 |
| MS.gene050464 | MS.gene069712 | 0.812391 | 4.34E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene069712 | 0.811025 | 8.61E-51 | -1.69E-46 |
| MS.gene050538 | MS.gene069712 | 0.806203 | 9.22E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene069712 | 0.893152 | 8.20E-75 | -1.69E-46 |
| MS.gene050670 | MS.gene069712 | 0.893139 | 8.30E-75 | -1.69E-46 |
| MS.gene050690 | MS.gene069712 | 0.803031 | 4.23E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene069712 | 0.849009 | 4.26E-60 | -1.69E-46 |
| MS.gene050772 | MS.gene069712 | 0.87425 | 7.82E-68 | -1.69E-46 |
| MS.gene05080 | MS.gene069712 | 0.827372 | 1.62E-54 | -1.69E-46 |
| MS.gene050950 | MS.gene069712 | 0.843818 | 1.11E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene069712 | 0.895911 | 6.11E-76 | -1.69E-46 |
| MS.gene051228 | MS.gene069712 | 0.80248 | 5.50E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene069712 | 0.850399 | 1.74E-60 | -1.69E-46 |
| MS.gene051525 | MS.gene069712 | 0.821511 | 3.88E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene069712 | 0.820507 | 6.61E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene069712 | 0.832356 | 9.91E-56 | -1.69E-46 |
| MS.gene051692 | MS.gene069712 | 0.806543 | 7.82E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene069712 | 0.839616 | 1.42E-57 | -1.69E-46 |
| MS.gene051858 | MS.gene069712 | 0.800656 | 1.30E-48 | -1.69E-46 |
| MS.gene052134 | MS.gene069712 | 0.808832 | 2.55E-50 | -1.69E-46 |
| MS.gene052135 | MS.gene069712 | 0.808678 | 2.75E-50 | -1.69E-46 |
| MS.gene052136 | MS.gene069712 | 0.82205 | 2.91E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene069712 | 0.831389 | 1.72E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene069712 | 0.823593 | 1.27E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene069712 | 0.830282 | 3.21E-55 | -1.69E-46 |
| MS.gene052322 | MS.gene069712 | 0.82236 | 2.47E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene069712 | 0.824723 | 6.92E-54 | -1.69E-46 |
| MS.gene052346 | MS.gene069712 | 0.827013 | 1.98E-54 | -1.69E-46 |
| MS.gene05240 | MS.gene069712 | -0.800533 | 1.38E-48 | -1.69E-46 |
| MS.gene052414 | MS.gene069712 | 0.853553 | 2.21E-61 | -1.69E-46 |
| MS.gene052421 | MS.gene069712 | 0.837122 | 6.26E-57 | -1.69E-46 |
| MS.gene052481 | MS.gene069712 | 0.850988 | 1.19E-60 | -1.69E-46 |
| MS.gene052484 | MS.gene069712 | 0.850274 | 1.89E-60 | -1.69E-46 |
| MS.gene052485 | MS.gene069712 | 0.836245 | 1.05E-56 | -1.69E-46 |
| MS.gene052501 | MS.gene069712 | 0.832563 | 8.80E-56 | -1.69E-46 |
| MS.gene052505 | MS.gene069712 | 0.836139 | 1.12E-56 | -1.69E-46 |
| MS.gene052508 | MS.gene069712 | 0.840756 | 7.18E-58 | -1.69E-46 |
| MS.gene052510 | MS.gene069712 | 0.837676 | 4.52E-57 | -1.69E-46 |
| MS.gene052615 | MS.gene069712 | 0.842737 | 2.15E-58 | -1.69E-46 |
| MS.gene052966 | MS.gene069712 | 0.802685 | 4.99E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene069712 | 0.866465 | 2.80E-65 | -1.69E-46 |
| MS.gene053009 | MS.gene069712 | 0.810058 | 1.39E-50 | -1.69E-46 |
| MS.gene053103 | MS.gene069712 | 0.818384 | 2.02E-52 | -1.69E-46 |
| MS.gene053104 | MS.gene069712 | 0.821543 | 3.82E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene069712 | 0.810066 | 1.39E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene069712 | 0.874537 | 6.25E-68 | -1.69E-46 |
| MS.gene053209 | MS.gene069712 | 0.870462 | 1.43E-66 | -1.69E-46 |
| MS.gene053213 | MS.gene069712 | 0.834528 | 2.85E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene069712 | 0.818968 | 1.49E-52 | -1.69E-46 |
| MS.gene053436 | MS.gene069712 | 0.81738 | 3.40E-52 | -1.69E-46 |
| MS.gene053449 | MS.gene069712 | 0.841641 | 4.20E-58 | -1.69E-46 |
| MS.gene053574 | MS.gene069712 | 0.853053 | 3.08E-61 | -1.69E-46 |
| MS.gene053632 | MS.gene069712 | 0.817603 | 3.03E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene069712 | 0.844553 | 7.04E-59 | -1.69E-46 |
| MS.gene053916 | MS.gene069712 | 0.829171 | 5.98E-55 | -1.69E-46 |
| MS.gene054600 | MS.gene069712 | 0.809932 | 1.48E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene069712 | 0.816845 | 4.48E-52 | -1.69E-46 |
| MS.gene054927 | MS.gene069712 | 0.852863 | 3.49E-61 | -1.69E-46 |
| MS.gene05505 | MS.gene069712 | 0.832487 | 9.19E-56 | -1.69E-46 |
| MS.gene055116 | MS.gene069712 | 0.894209 | 3.06E-75 | -1.69E-46 |
| MS.gene055206 | MS.gene069712 | 0.839423 | 1.60E-57 | -1.69E-46 |
| MS.gene055224 | MS.gene069712 | 0.816186 | 6.30E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene069712 | 0.848972 | 4.36E-60 | -1.69E-46 |
| MS.gene055369 | MS.gene069712 | 0.825616 | 4.25E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene069712 | 0.800226 | 1.59E-48 | -1.69E-46 |
| MS.gene055564 | MS.gene069712 | 0.840873 | 6.69E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene069712 | 0.808548 | 2.93E-50 | -1.69E-46 |
| MS.gene055647 | MS.gene069712 | 0.806076 | 9.81E-50 | -1.69E-46 |
| MS.gene055722 | MS.gene069712 | 0.864865 | 8.94E-65 | -1.69E-46 |
| MS.gene055741 | MS.gene069712 | 0.80701 | 6.23E-50 | -1.69E-46 |
| MS.gene055744 | MS.gene069712 | 0.810161 | 1.32E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene069712 | 0.851121 | 1.09E-60 | -1.69E-46 |
| MS.gene05594 | MS.gene069712 | 0.810367 | 1.19E-50 | -1.69E-46 |
| MS.gene05602 | MS.gene069712 | 0.802363 | 5.81E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene069712 | 0.812064 | 5.12E-51 | -1.69E-46 |
| MS.gene056166 | MS.gene069712 | 0.807003 | 6.25E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene069712 | 0.807555 | 4.77E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene069712 | 0.848736 | 5.07E-60 | -1.69E-46 |
| MS.gene056422 | MS.gene069712 | 0.823524 | 1.32E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene069712 | 0.890633 | 8.26E-74 | -1.69E-46 |
| MS.gene056609 | MS.gene069712 | 0.806934 | 6.46E-50 | -1.69E-46 |
| MS.gene05664 | MS.gene069712 | 0.83661 | 8.46E-57 | -1.69E-46 |
| MS.gene05666 | MS.gene069712 | 0.820613 | 6.25E-53 | -1.69E-46 |
| MS.gene056877 | MS.gene069712 | 0.813932 | 1.99E-51 | -1.69E-46 |
| MS.gene056897 | MS.gene069712 | 0.806158 | 9.42E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene069712 | 0.80755 | 4.79E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene069712 | 0.853575 | 2.18E-61 | -1.69E-46 |
| MS.gene057124 | MS.gene069712 | 0.902847 | 6.38E-79 | -1.69E-46 |
| MS.gene057129 | MS.gene069712 | 0.819624 | 1.05E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene069712 | 0.818209 | 2.21E-52 | -1.69E-46 |
| MS.gene057331 | MS.gene069712 | 0.884752 | 1.47E-71 | -1.69E-46 |
| MS.gene05735 | MS.gene069712 | 0.816388 | 5.68E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene069712 | 0.868143 | 8.13E-66 | -1.69E-46 |
| MS.gene057734 | MS.gene069712 | 0.860502 | 1.98E-63 | -1.69E-46 |
| MS.gene057749 | MS.gene069712 | 0.835916 | 1.27E-56 | -1.69E-46 |
| MS.gene057823 | MS.gene069712 | 0.838068 | 3.58E-57 | -1.69E-46 |
| MS.gene057825 | MS.gene069712 | 0.810423 | 1.16E-50 | -1.69E-46 |
| MS.gene057856 | MS.gene069712 | 0.813644 | 2.31E-51 | -1.69E-46 |
| MS.gene058006 | MS.gene069712 | 0.830363 | 3.06E-55 | -1.69E-46 |
| MS.gene058019 | MS.gene069712 | 0.838869 | 2.23E-57 | -1.69E-46 |
| MS.gene058082 | MS.gene069712 | 0.820107 | 8.17E-53 | -1.69E-46 |
| MS.gene058120 | MS.gene069712 | 0.802569 | 5.27E-49 | -1.69E-46 |
| MS.gene058130 | MS.gene069712 | 0.815889 | 7.34E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene069712 | 0.813468 | 2.52E-51 | -1.69E-46 |
| MS.gene058323 | MS.gene069712 | 0.80839 | 3.17E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene069712 | 0.800514 | 1.39E-48 | -1.69E-46 |
| MS.gene058544 | MS.gene069712 | 0.801003 | 1.11E-48 | -1.69E-46 |
| MS.gene058660 | MS.gene069712 | 0.809954 | 1.47E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene069712 | 0.852996 | 3.20E-61 | -1.69E-46 |
| MS.gene058723 | MS.gene069712 | 0.819234 | 1.29E-52 | -1.69E-46 |
| MS.gene058787 | MS.gene069712 | 0.81267 | 3.77E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene069712 | 0.83443 | 3.01E-56 | -1.69E-46 |
| MS.gene05883 | MS.gene069712 | 0.812686 | 3.74E-51 | -1.69E-46 |
| MS.gene05886 | MS.gene069712 | 0.825082 | 5.69E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene069712 | 0.832307 | 1.02E-55 | -1.69E-46 |
| MS.gene058948 | MS.gene069712 | 0.830271 | 3.23E-55 | -1.69E-46 |
| MS.gene059141 | MS.gene069712 | 0.800873 | 1.17E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene069712 | 0.801544 | 8.57E-49 | -1.69E-46 |
| MS.gene059366 | MS.gene069712 | 0.836886 | 7.19E-57 | -1.69E-46 |
| MS.gene059368 | MS.gene069712 | 0.802668 | 5.03E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene069712 | 0.825188 | 5.37E-54 | -1.69E-46 |
| MS.gene059455 | MS.gene069712 | 0.833872 | 4.15E-56 | -1.69E-46 |
| MS.gene059536 | MS.gene069712 | 0.824545 | 7.62E-54 | -1.69E-46 |
| MS.gene059667 | MS.gene069712 | 0.80033 | 1.52E-48 | -1.69E-46 |
| MS.gene059676 | MS.gene069712 | 0.828125 | 1.07E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene069712 | 0.871617 | 5.96E-67 | -1.69E-46 |
| MS.gene059692 | MS.gene069712 | 0.849902 | 2.40E-60 | -1.69E-46 |
| MS.gene059695 | MS.gene069712 | 0.853263 | 2.68E-61 | -1.69E-46 |
| MS.gene059711 | MS.gene069712 | 0.831348 | 1.76E-55 | -1.69E-46 |
| MS.gene059718 | MS.gene069712 | 0.833611 | 4.83E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene069712 | 0.800583 | 1.35E-48 | -1.69E-46 |
| MS.gene059960 | MS.gene069712 | 0.811789 | 5.87E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene069712 | 0.810664 | 1.03E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene069712 | 0.877222 | 7.47E-69 | -1.69E-46 |
| MS.gene060804 | MS.gene069712 | 0.846696 | 1.85E-59 | -1.69E-46 |
| MS.gene060818 | MS.gene069712 | 0.820667 | 6.08E-53 | -1.69E-46 |
| MS.gene060835 | MS.gene069712 | 0.889235 | 2.90E-73 | -1.69E-46 |
| MS.gene060837 | MS.gene069712 | 0.863156 | 3.04E-64 | -1.69E-46 |
| MS.gene06092 | MS.gene069712 | 0.835981 | 1.22E-56 | -1.69E-46 |
| MS.gene061041 | MS.gene069712 | 0.825517 | 4.49E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene069712 | 0.813837 | 2.09E-51 | -1.69E-46 |
| MS.gene061051 | MS.gene069712 | -0.812625 | 3.86E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene069712 | 0.869219 | 3.65E-66 | -1.69E-46 |
| MS.gene061200 | MS.gene069712 | 0.806506 | 7.96E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069712.t1 | MTR_1g082420 | 92.667 | 150 | 7 | 1 | 1 | 150 | 144 | 289 | 6.52e-95 | 276 |
| MS.gene069712.t1 | MTR_1g082420 | 98.438 | 64 | 1 | 0 | 1 | 64 | 144 | 207 | 2.55e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069712.t1 | AT1G54780 | 81.333 | 150 | 24 | 1 | 1 | 150 | 140 | 285 | 2.89e-87 | 257 |
Find 34 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGTTTGCGGACCAAATTT+TGG | 0.287868 | 1.4:-56192027 | MS.gene069712:CDS |
| TATCAATTGTCAATACATAA+AGG | 0.302146 | 1.4:-56190579 | MS.gene069712:CDS |
| GATACCAACGCTCCAAAATT+TGG | 0.302536 | 1.4:+56192015 | None:intergenic |
| TCTTGTAGTTGGAGGTTTGT+TGG | 0.348630 | 1.4:-56190872 | MS.gene069712:CDS |
| ATCAATTGTCAATACATAAA+GGG | 0.365525 | 1.4:-56190578 | MS.gene069712:CDS |
| ACTGTTTCAGAGAACCTTCC+AGG | 0.376813 | 1.4:-56191873 | MS.gene069712:intron |
| CAGAAAGAAGGAGCAGTTAC+TGG | 0.391425 | 1.4:-56191942 | MS.gene069712:CDS |
| CAATTCTCTCTTGTAGTTGG+AGG | 0.420228 | 1.4:-56190880 | MS.gene069712:CDS |
| TATTGCATTTGTTGTTCCTA+TGG | 0.427254 | 1.4:-56190848 | MS.gene069712:intron |
| CGACTAGTTGCTGCCATTGA+CGG | 0.431818 | 1.4:-56190991 | MS.gene069712:CDS |
| ACCGAGGGACCACCAGGATC+TGG | 0.448423 | 1.4:+56190964 | None:intergenic |
| GGACAATTCTCTCTTGTAGT+TGG | 0.450595 | 1.4:-56190883 | MS.gene069712:CDS |
| ACGTTTGTCGTCTTTAACCG+AGG | 0.492907 | 1.4:+56190948 | None:intergenic |
| TCCAGATCCTGGTGGTCCCT+CGG | 0.499224 | 1.4:-56190965 | MS.gene069712:CDS |
| TTGGTATCCTTCTGTGGAAG+AGG | 0.505336 | 1.4:-56192000 | MS.gene069712:CDS |
| TTTGTATGCAGTATTGGCTA+CGG | 0.505886 | 1.4:-56191052 | MS.gene069712:intron |
| TCTTTAACCGAGGGACCACC+AGG | 0.532906 | 1.4:+56190958 | None:intergenic |
| ATTGACGGACTTCCAGATCC+TGG | 0.535082 | 1.4:-56190976 | MS.gene069712:CDS |
| AGGATCTGGAAGTCCGTCAA+TGG | 0.539431 | 1.4:+56190978 | None:intergenic |
| TCATTACCCTCTTCCACAGA+AGG | 0.547276 | 1.4:+56191993 | None:intergenic |
| CCTACGGCTTGAACAAAAGC+AGG | 0.557352 | 1.4:+56191915 | None:intergenic |
| CTTGTAACAAGTCAGAAAGA+AGG | 0.568574 | 1.4:-56191954 | MS.gene069712:CDS |
| GGGTAATGACAAGGGTGTTG+TGG | 0.576837 | 1.4:-56191979 | MS.gene069712:CDS |
| CGTTTGTCGTCTTTAACCGA+GGG | 0.605535 | 1.4:+56190949 | None:intergenic |
| GGAGCGTTGGTATCCTTCTG+TGG | 0.606556 | 1.4:-56192006 | MS.gene069712:CDS |
| GAAGAGACAGAAGAAAAGCG+TGG | 0.608619 | 1.4:-56190904 | MS.gene069712:CDS |
| TGGTATCCTTCTGTGGAAGA+GGG | 0.615864 | 1.4:-56191999 | MS.gene069712:CDS |
| TGAGTCTAACTTCAAAACAA+AGG | 0.628354 | 1.4:-56190926 | MS.gene069712:CDS |
| TGTGGAAGAGGGTAATGACA+AGG | 0.647686 | 1.4:-56191988 | MS.gene069712:CDS |
| GCCATTAGGAAGTACCTGGA+AGG | 0.650563 | 1.4:+56191859 | None:intergenic |
| AAAGAAGGAGCAGTTACTGG+TGG | 0.670414 | 1.4:-56191939 | MS.gene069712:CDS |
| GTGGAAGAGGGTAATGACAA+GGG | 0.686921 | 1.4:-56191987 | MS.gene069712:CDS |
| GACGGACTTCCAGATCCTGG+TGG | 0.696278 | 1.4:-56190973 | MS.gene069712:CDS |
| TCTCTGAAACAGTAGCATCG+AGG | 0.748886 | 1.4:+56191883 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATCCATTATCTTATTTTT+TGG | + | chr1.4:56191757-56191776 | None:intergenic | 15.0% |
| !! | AACTCTTCTTAACAAAAAAA+GGG | + | chr1.4:56191095-56191114 | None:intergenic | 20.0% |
| !! | AATAATCCAACAAACATATT+TGG | + | chr1.4:56191922-56191941 | None:intergenic | 20.0% |
| !! | ATAATCCAACAAACATATTT+GGG | + | chr1.4:56191921-56191940 | None:intergenic | 20.0% |
| !! | ATCAATTGTCAATACATAAA+GGG | - | chr1.4:56191980-56191999 | MS.gene069712:CDS | 20.0% |
| !! | GAAATTAAAGAGTGATAATT+TGG | + | chr1.4:56191801-56191820 | None:intergenic | 20.0% |
| !! | TATCAATTGTCAATACATAA+AGG | - | chr1.4:56191979-56191998 | MS.gene069712:CDS | 20.0% |
| !! | TTTCTTGAAAAATAAATGCA+AGG | - | chr1.4:56191016-56191035 | MS.gene069712:CDS | 20.0% |
| ! | CAACTCTTCTTAACAAAAAA+AGG | + | chr1.4:56191096-56191115 | None:intergenic | 25.0% |
| ! | GTAGCCAAAAAATAAGATAA+TGG | - | chr1.4:56191750-56191769 | MS.gene069712:intron | 25.0% |
| ! | TAATTCCCAAATATGTTTGT+TGG | - | chr1.4:56191913-56191932 | MS.gene069712:CDS | 25.0% |
| ! | TACATACTTCAGTTTAAACA+AGG | - | chr1.4:56191309-56191328 | MS.gene069712:intron | 25.0% |
| ! | TGATTATTTATGTCTGTGAA+AGG | - | chr1.4:56190808-56190827 | MS.gene069712:intron | 25.0% |
| ! | TTGTTTAAACTGAAGTATGT+AGG | + | chr1.4:56191310-56191329 | None:intergenic | 25.0% |
| !! | AAGCAACTTTGTTATGAATA+TGG | - | chr1.4:56190929-56190948 | MS.gene069712:CDS | 25.0% |
| !!! | ATTGTTTTTCTGTAGCATAT+TGG | - | chr1.4:56190741-56190760 | MS.gene069712:intron | 25.0% |
| !!! | CAAATAAGATCAGAGTTTTT+TGG | - | chr1.4:56191880-56191899 | MS.gene069712:CDS | 25.0% |
| !!! | TTGTTTTTCTGTAGCATATT+GGG | - | chr1.4:56190742-56190761 | MS.gene069712:intron | 25.0% |
| !!! | TTTTTTCTCACCAACAAATA+TGG | - | chr1.4:56190862-56190881 | MS.gene069712:CDS | 25.0% |
| !!! | TTTTTTGTTAAGAAGAGTTG+AGG | - | chr1.4:56191096-56191115 | MS.gene069712:intron | 25.0% |
| ACTCAATTATAACATGAGCT+TGG | + | chr1.4:56191847-56191866 | None:intergenic | 30.0% | |
| ACTGAGTATATAGTAAAGGA+CGG | - | chr1.4:56190968-56190987 | MS.gene069712:CDS | 30.0% | |
| ATACAGCTACTAAATGGATA+GGG | + | chr1.4:56191267-56191286 | None:intergenic | 30.0% | |
| ATGCACTGAGTATATAGTAA+AGG | - | chr1.4:56190964-56190983 | MS.gene069712:CDS | 30.0% | |
| CAACATATACAGCTACTAAA+TGG | + | chr1.4:56191273-56191292 | None:intergenic | 30.0% | |
| CATATGTTCATAAACTGTGA+AGG | - | chr1.4:56190906-56190925 | MS.gene069712:CDS | 30.0% | |
| TAAGCATAGTATTGTACCAT+AGG | + | chr1.4:56191729-56191748 | None:intergenic | 30.0% | |
| TATACAGCTACTAAATGGAT+AGG | + | chr1.4:56191268-56191287 | None:intergenic | 30.0% | |
| TCATCATGATCATTGATCAT+TGG | + | chr1.4:56191168-56191187 | None:intergenic | 30.0% | |
| TGAGTCTAACTTCAAAACAA+AGG | - | chr1.4:56191632-56191651 | MS.gene069712:intron | 30.0% | |
| TTTAAACTGAAGTATGTAGG+CGG | + | chr1.4:56191307-56191326 | None:intergenic | 30.0% | |
| ! | TGTTTTTCTGTAGCATATTG+GGG | - | chr1.4:56190743-56190762 | MS.gene069712:intron | 30.0% |
| !! | AGCAGTTGTGATCATTTTTA+GGG | - | chr1.4:56191454-56191473 | MS.gene069712:intron | 30.0% |
| !! | TAGCAGTTGTGATCATTTTT+AGG | - | chr1.4:56191453-56191472 | MS.gene069712:intron | 30.0% |
| !! | TATTGCATTTGTTGTTCCTA+TGG | - | chr1.4:56191710-56191729 | MS.gene069712:intron | 30.0% |
| AAGGATTTACAAGACTGTCT+TGG | - | chr1.4:56190827-56190846 | MS.gene069712:intron | 35.0% | |
| AGTAGCTGTATATGTTGTCA+AGG | - | chr1.4:56191276-56191295 | MS.gene069712:intron | 35.0% | |
| CATGTCCATCATTATCGTTA+TGG | + | chr1.4:56191191-56191210 | None:intergenic | 35.0% | |
| CTTCAGTTTAAACAAGGCAA+CGG | - | chr1.4:56191315-56191334 | MS.gene069712:intron | 35.0% | |
| CTTGTAACAAGTCAGAAAGA+AGG | - | chr1.4:56190604-56190623 | MS.gene069712:intron | 35.0% | |
| GATGACCATAACGATAATGA+TGG | - | chr1.4:56191183-56191202 | MS.gene069712:intron | 35.0% | |
| GTAAAGGACGGATGATAATT+TGG | - | chr1.4:56190980-56190999 | MS.gene069712:CDS | 35.0% | |
| GTAACTTCAGAAGACATACA+TGG | + | chr1.4:56191423-56191442 | None:intergenic | 35.0% | |
| TGCATACAAAAACCAGACAA+TGG | + | chr1.4:56191496-56191515 | None:intergenic | 35.0% | |
| TGCATCAAGTGCATAAAAAC+TGG | + | chr1.4:56191953-56191972 | None:intergenic | 35.0% | |
| TTCACACTTGCCATATTTGT+TGG | + | chr1.4:56190875-56190894 | None:intergenic | 35.0% | |
| ! | ATCGAGGATATTTTCTCCTA+CGG | + | chr1.4:56190662-56190681 | None:intergenic | 35.0% |
| !! | CTGGTTTTTGTATGCAGTAT+TGG | - | chr1.4:56191500-56191519 | MS.gene069712:intron | 35.0% |
| !! | GAATTGTTTTGTCAGCATGT+GGG | - | chr1.4:56191052-56191071 | MS.gene069712:intron | 35.0% |
| !! | GCAGTTGTGATCATTTTTAG+GGG | - | chr1.4:56191455-56191474 | MS.gene069712:intron | 35.0% |
| !! | TGAATTGTTTTGTCAGCATG+TGG | - | chr1.4:56191051-56191070 | MS.gene069712:intron | 35.0% |
| !! | TTTGTATGCAGTATTGGCTA+CGG | - | chr1.4:56191506-56191525 | MS.gene069712:intron | 35.0% |
| !!! | ATCCCTTTTTAGCTAGCATA+CGG | - | chr1.4:56191240-56191259 | MS.gene069712:intron | 35.0% |
| AACACACTACTACCATTGTC+TGG | - | chr1.4:56191481-56191500 | MS.gene069712:intron | 40.0% | |
| AGTTGAGGTTGTGCTTTATC+AGG | - | chr1.4:56191111-56191130 | MS.gene069712:intron | 40.0% | |
| ATCCAAATCCACTAGCCATT+AGG | + | chr1.4:56190716-56190735 | None:intergenic | 40.0% | |
| CAATTCTCTCTTGTAGTTGG+AGG | - | chr1.4:56191678-56191697 | MS.gene069712:intron | 40.0% | |
| GACCGTATGCTAGCTAAAAA+GGG | + | chr1.4:56191245-56191264 | None:intergenic | 40.0% | |
| GATACCAACGCTCCAAAATT+TGG | + | chr1.4:56190546-56190565 | None:intergenic | 40.0% | |
| GGACAATTCTCTCTTGTAGT+TGG | - | chr1.4:56191675-56191694 | MS.gene069712:intron | 40.0% | |
| GTTGAGGTTGTGCTTTATCA+GGG | - | chr1.4:56191112-56191131 | MS.gene069712:intron | 40.0% | |
| TCTTGTAGTTGGAGGTTTGT+TGG | - | chr1.4:56191686-56191705 | MS.gene069712:intron | 40.0% | |
| TTCAGCAGGGTGATAAACTA+GGG | - | chr1.4:56191341-56191360 | MS.gene069712:intron | 40.0% | |
| TTGAGGTTGTGCTTTATCAG+GGG | - | chr1.4:56191113-56191132 | MS.gene069712:intron | 40.0% | |
| TTTCAGCAGGGTGATAAACT+AGG | - | chr1.4:56191340-56191359 | MS.gene069712:intron | 40.0% | |
| ! | TGAGTTTGCGGACCAAATTT+TGG | - | chr1.4:56190531-56190550 | MS.gene069712:CDS | 40.0% |
| !! | TTCCTAATGGCTAGTGGATT+TGG | - | chr1.4:56190711-56190730 | MS.gene069712:intron | 40.0% |
| AAAGAAGGAGCAGTTACTGG+TGG | - | chr1.4:56190619-56190638 | MS.gene069712:intron | 45.0% | |
| ACCTTCCAGGTACTTCCTAA+TGG | - | chr1.4:56190698-56190717 | MS.gene069712:intron | 45.0% | |
| ACGTTTGTCGTCTTTAACCG+AGG | + | chr1.4:56191613-56191632 | None:intergenic | 45.0% | |
| ACTGTTTCAGAGAACCTTCC+AGG | - | chr1.4:56190685-56190704 | MS.gene069712:intron | 45.0% | |
| AGGTACTTCCTAATGGCTAG+TGG | - | chr1.4:56190705-56190724 | MS.gene069712:intron | 45.0% | |
| CAGAAAGAAGGAGCAGTTAC+TGG | - | chr1.4:56190616-56190635 | MS.gene069712:intron | 45.0% | |
| CGTTTGTCGTCTTTAACCGA+GGG | + | chr1.4:56191612-56191631 | None:intergenic | 45.0% | |
| GAAGAGACAGAAGAAAAGCG+TGG | - | chr1.4:56191654-56191673 | MS.gene069712:intron | 45.0% | |
| GGACCGTATGCTAGCTAAAA+AGG | + | chr1.4:56191246-56191265 | None:intergenic | 45.0% | |
| GTGGAAGAGGGTAATGACAA+GGG | - | chr1.4:56190571-56190590 | MS.gene069712:CDS | 45.0% | |
| TCATTACCCTCTTCCACAGA+AGG | + | chr1.4:56190568-56190587 | None:intergenic | 45.0% | |
| TGGTATCCTTCTGTGGAAGA+GGG | - | chr1.4:56190559-56190578 | MS.gene069712:CDS | 45.0% | |
| TGTGGAAGAGGGTAATGACA+AGG | - | chr1.4:56190570-56190589 | MS.gene069712:CDS | 45.0% | |
| TTGGTATCCTTCTGTGGAAG+AGG | - | chr1.4:56190558-56190577 | MS.gene069712:CDS | 45.0% | |
| !! | AAGGCAACGGATTTTCAGCA+GGG | - | chr1.4:56191328-56191347 | MS.gene069712:intron | 45.0% |
| !! | ACTAGCCATTAGGAAGTACC+TGG | + | chr1.4:56190706-56190725 | None:intergenic | 45.0% |
| !! | TCTCTGAAACAGTAGCATCG+AGG | + | chr1.4:56190678-56190697 | None:intergenic | 45.0% |
| !!! | CGCTGATGCTTTTGAGTTTG+CGG | - | chr1.4:56190519-56190538 | MS.gene069712:CDS | 45.0% |
| AGGATCTGGAAGTCCGTCAA+TGG | + | chr1.4:56191583-56191602 | None:intergenic | 50.0% | |
| CCTACGGCTTGAACAAAAGC+AGG | + | chr1.4:56190646-56190665 | None:intergenic | 50.0% | |
| ! | CGACTAGTTGCTGCCATTGA+CGG | - | chr1.4:56191567-56191586 | MS.gene069712:intron | 50.0% |
| !! | ATTGACGGACTTCCAGATCC+TGG | - | chr1.4:56191582-56191601 | MS.gene069712:intron | 50.0% |
| !! | CAAGGCAACGGATTTTCAGC+AGG | - | chr1.4:56191327-56191346 | MS.gene069712:intron | 50.0% |
| !! | CCTGCTTTTGTTCAAGCCGT+AGG | - | chr1.4:56190643-56190662 | MS.gene069712:intron | 50.0% |
| !! | GCCATTAGGAAGTACCTGGA+AGG | + | chr1.4:56190702-56190721 | None:intergenic | 50.0% |
| !! | GGGTAATGACAAGGGTGTTG+TGG | - | chr1.4:56190579-56190598 | MS.gene069712:CDS | 50.0% |
| !!! | CGGACCAAATTTTGGAGCGT+TGG | - | chr1.4:56190539-56190558 | MS.gene069712:CDS | 50.0% |
| TCTTTAACCGAGGGACCACC+AGG | + | chr1.4:56191603-56191622 | None:intergenic | 55.0% | |
| !! | GGAGCGTTGGTATCCTTCTG+TGG | - | chr1.4:56190552-56190571 | MS.gene069712:CDS | 55.0% |
| TCCAGATCCTGGTGGTCCCT+CGG | - | chr1.4:56191593-56191612 | MS.gene069712:intron | 60.0% | |
| ! | GACGGACTTCCAGATCCTGG+TGG | - | chr1.4:56191585-56191604 | MS.gene069712:intron | 60.0% |
| ACCGAGGGACCACCAGGATC+TGG | + | chr1.4:56191597-56191616 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 56190514 | 56192066 | 56190514 | ID=MS.gene069712 |
| chr1.4 | mRNA | 56190514 | 56192066 | 56190514 | ID=MS.gene069712.t1;Parent=MS.gene069712 |
| chr1.4 | exon | 56191874 | 56192066 | 56191874 | ID=MS.gene069712.t1.exon1;Parent=MS.gene069712.t1 |
| chr1.4 | CDS | 56191874 | 56192066 | 56191874 | ID=cds.MS.gene069712.t1;Parent=MS.gene069712.t1 |
| chr1.4 | exon | 56190849 | 56191063 | 56190849 | ID=MS.gene069712.t1.exon2;Parent=MS.gene069712.t1 |
| chr1.4 | CDS | 56190849 | 56191063 | 56190849 | ID=cds.MS.gene069712.t1;Parent=MS.gene069712.t1 |
| chr1.4 | exon | 56190514 | 56190606 | 56190514 | ID=MS.gene069712.t1.exon3;Parent=MS.gene069712.t1 |
| chr1.4 | CDS | 56190514 | 56190606 | 56190514 | ID=cds.MS.gene069712.t1;Parent=MS.gene069712.t1 |
| Gene Sequence |
| Protein sequence |
