AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28138


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28138.t1 MTR_2g066060 35.088 171 99 2 161 322 218 385 2.28e-21 94.0
MS.gene28138.t1 MTR_7g114070 29.114 158 99 3 177 323 178 333 8.81e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28138.t1 AT2G21960 82.686 283 49 0 43 325 50 332 2.22e-171 479
MS.gene28138.t1 AT1G56180 31.928 166 104 1 166 322 217 382 4.24e-19 87.4
MS.gene28138.t1 AT5G27290 31.847 157 94 4 177 322 179 333 7.36e-14 71.6

Find 73 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTGGCTTACCCATTT+TGG 0.102537 4.4:+9842467 MS.gene28138:CDS
GAAGCTCTGGTTGTGAATTT+AGG 0.115841 4.4:-9840082 None:intergenic
CTTCGAGAGCTGACAACTTT+AGG 0.199826 4.4:+9841005 MS.gene28138:CDS
GTCGATCCATGAAGCCTTAA+TGG 0.219380 4.4:+9843276 MS.gene28138:CDS
ATTCTGGCTGGCCAGCTTCC+CGG 0.227667 4.4:+9841242 MS.gene28138:CDS
ATCCAGTGAATATCCCAAAA+TGG 0.251435 4.4:-9842481 None:intergenic
TTCGAGAGCTGACAACTTTA+GGG 0.257197 4.4:+9841006 MS.gene28138:CDS
AACTGGATTCTTGGGTATTC+TGG 0.263208 4.4:+9841226 MS.gene28138:CDS
CTTGATCAACTGAGTGAAAT+TGG 0.263702 4.4:+9840430 MS.gene28138:CDS
TTCTGGCTGGCCAGCTTCCC+GGG 0.284405 4.4:+9841243 MS.gene28138:CDS
GCAATCCTTTCTTGATAATC+AGG 0.293245 4.4:-9842289 None:intergenic
AAGCTCTGGTTGTGAATTTA+GGG 0.294762 4.4:-9840081 None:intergenic
TTGGGATATTCACTGGATAT+TGG 0.298796 4.4:+9842486 MS.gene28138:CDS
TTCTTTGTACCATACTTGAT+TGG 0.309773 4.4:+9842096 MS.gene28138:CDS
AGTATTTCCTTAGTGGTATT+GGG 0.320539 4.4:+9842120 MS.gene28138:CDS
TGGCTGAGAACTCCATTTCT+TGG 0.327017 4.4:-9840458 None:intergenic
TTTACTGTGGTTGGAACAAC+TGG 0.327694 4.4:+9841209 MS.gene28138:CDS
ATCTTTGCTGAGTTGTGGTT+TGG 0.340177 4.4:-9843064 None:intergenic
GGTTGGAACAACTGGATTCT+TGG 0.341417 4.4:+9841217 MS.gene28138:CDS
TTTCTAGTTGCTTATCTGCT+TGG 0.354201 4.4:+9842453 MS.gene28138:intron
CTTTGCCATCGATGCCATTA+AGG 0.360946 4.4:-9843290 None:intergenic
AGCAACAAAATCTCACTAGA+TGG 0.367508 4.4:+9843088 MS.gene28138:CDS
TTTGGTGGTGATGATGATTA+TGG 0.373375 4.4:-9840039 None:intergenic
GAGTATTTCCTTAGTGGTAT+TGG 0.376884 4.4:+9842119 MS.gene28138:CDS
GGTTGATGTTGAAGCATGTT+TGG 0.383493 4.4:-9840057 None:intergenic
TCCTTAGTGGTATTGGGTAT+AGG 0.386228 4.4:+9842126 MS.gene28138:CDS
GAAATACTCCCAATCAAGTA+TGG 0.386262 4.4:-9842105 None:intergenic
GATTGGGAGTATTTCCTTAG+TGG 0.396031 4.4:+9842113 MS.gene28138:CDS
TCTTTGTACCATACTTGATT+GGG 0.396789 4.4:+9842097 MS.gene28138:CDS
TGCAGCAGAGGAAGAAGCTC+TGG 0.413680 4.4:-9840095 None:intergenic
CAGATTGGCTGTTGTATCAA+TGG 0.423423 4.4:+9842854 MS.gene28138:intron
TCGATGCCATTAAGGCTTCA+TGG 0.429892 4.4:-9843282 None:intergenic
TGTTGTATCAATGGCTGGAC+TGG 0.438705 4.4:+9842863 MS.gene28138:CDS
AAATTGGTTGGGCCAAGAAA+TGG 0.440413 4.4:+9840446 MS.gene28138:CDS
TCCAGTGAATATCCCAAAAT+GGG 0.449171 4.4:-9842480 None:intergenic
GCTTCTTCCTCTGCTGCACC+TGG 0.456080 4.4:+9840100 MS.gene28138:CDS
TTAACATATGACAAGGTTGT+TGG 0.456845 4.4:+9842897 MS.gene28138:CDS
ATGTCAATCTCATTGATGAT+AGG 0.463698 4.4:+9842517 MS.gene28138:CDS
TGCTGATCTTTGCTGAGTTG+TGG 0.475443 4.4:-9843069 None:intergenic
GTTGGAACAACTGGATTCTT+GGG 0.483037 4.4:+9841218 MS.gene28138:CDS
CTTGAAAAGCTTCTCTATAG+TGG 0.485483 4.4:+9842540 MS.gene28138:CDS
GGATTCTTGGGTATTCTGGC+TGG 0.487468 4.4:+9841230 MS.gene28138:CDS
GGATACATACCCCGGGAAGC+TGG 0.488405 4.4:-9841253 None:intergenic
AGACAGCAATGCAGTTAAAG+AGG 0.489669 4.4:+9840405 MS.gene28138:CDS
GGTATAGGCAGCACATCTCC+TGG 0.494301 4.4:+9842141 MS.gene28138:CDS
TTGATGCTAAGGAGATAGAT+AGG 0.494421 4.4:+9842568 MS.gene28138:CDS
AATGGCATCGATGGCAAAGA+AGG 0.499709 4.4:+9843294 MS.gene28138:CDS
GTCGACACCAGGTGCAGCAG+AGG 0.506013 4.4:-9840107 None:intergenic
ACCGTACGACGTGAAACATA+TGG 0.511639 4.4:-9840478 None:intergenic
TTGGCTGTTGTATCAATGGC+TGG 0.512860 4.4:+9842858 MS.gene28138:CDS
TGTTGACTGATGCAGGATTG+GGG 0.521890 4.4:+9842072 MS.gene28138:intron
GCCATATGTTTCACGTCGTA+CGG 0.524271 4.4:+9840477 MS.gene28138:CDS
TAGTGGTCAGCTTGATGCTA+AGG 0.529877 4.4:+9842557 MS.gene28138:CDS
TTGGGTAAAGATGATGAGTA+AGG 0.530143 4.4:-9839998 None:intergenic
ATCAACTGAGTGAAATTGGT+TGG 0.534376 4.4:+9840434 MS.gene28138:CDS
GCCTATACCCAATACCACTA+AGG 0.541332 4.4:-9842127 None:intergenic
TGAAGCCTTAATGGCATCGA+TGG 0.543498 4.4:+9843285 MS.gene28138:CDS
TCAACTGAGTGAAATTGGTT+GGG 0.547534 4.4:+9840435 MS.gene28138:CDS
AAAAGCTGCTAATAGCTGCT+TGG 0.552163 4.4:-9842255 None:intergenic
TTCTGACACTAGGAATTGCA+AGG 0.566777 4.4:-9841046 None:intergenic
TGATGTTGAAGCATGTTTGG+TGG 0.574649 4.4:-9840054 None:intergenic
GCAACAAAATCTCACTAGAT+GGG 0.575785 4.4:+9843089 MS.gene28138:CDS
TCTTGATTCTGCCATTGCCA+AGG 0.579069 4.4:+9840138 MS.gene28138:CDS
CTCTGGTTGTGAATTTAGGG+AGG 0.583321 4.4:-9840078 None:intergenic
ATGGTCAATTACCTTGGCAA+TGG 0.596299 4.4:-9840149 None:intergenic
CTCACATCATTTCTGACACT+AGG 0.596674 4.4:-9841056 None:intergenic
ATGGCTGGACTGGCAGCAGA+AGG 0.600695 4.4:+9842873 MS.gene28138:CDS
AGAGTGTTGAGGTCGACACC+AGG 0.613261 4.4:-9840118 None:intergenic
TCTGGCTGGCCAGCTTCCCG+GGG 0.613765 4.4:+9841244 MS.gene28138:CDS
GTATAGGCAGCACATCTCCT+GGG 0.621976 4.4:+9842142 MS.gene28138:CDS
TGGCAGAATCAAGAGTGTTG+AGG 0.645439 4.4:-9840129 None:intergenic
AGAAGGTTTAACATATGACA+AGG 0.674545 4.4:+9842890 MS.gene28138:CDS
TAAAGATGATGAGTAAGGCA+TGG 0.722574 4.4:-9839993 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTATAATATGGTTT+GGG - chr4.4:9840019-9840038 None:intergenic 10.0%
!! TTATGGTAAAAATTATAATA+TGG - chr4.4:9840025-9840044 None:intergenic 10.0%
!! ACTTCAAATAAAAAATGTAA+TGG - chr4.4:9840171-9840190 None:intergenic 15.0%
!! GCATATGAATATTTAAATAT+GGG - chr4.4:9840937-9840956 None:intergenic 15.0%
!! GTAAAAATTATAATATGGTT+TGG - chr4.4:9840020-9840039 None:intergenic 15.0%
!! TGCATATGAATATTTAAATA+TGG - chr4.4:9840938-9840957 None:intergenic 15.0%
!!! TAAAAAGGAAATTTTATCTT+GGG + chr4.4:9840796-9840815 MS.gene28138:intron 15.0%
!!! TTAAAAAGGAAATTTTATCT+TGG + chr4.4:9840795-9840814 MS.gene28138:intron 15.0%
!! AACATTTCCCTTTAAATATT+TGG - chr4.4:9840743-9840762 None:intergenic 20.0%
!! ACTTCTTCCAAATATTTAAA+GGG + chr4.4:9840733-9840752 MS.gene28138:intron 20.0%
!! AGTTATATAAAAATTACACG+AGG + chr4.4:9840188-9840207 MS.gene28138:intron 20.0%
!! TACTTCTTCCAAATATTTAA+AGG + chr4.4:9840732-9840751 MS.gene28138:intron 20.0%
!! TCTAATTAATATGTTAGTGT+AGG + chr4.4:9842227-9842246 MS.gene28138:intron 20.0%
!! TTAACAAATGACTACAAATT+GGG - chr4.4:9842782-9842801 None:intergenic 20.0%
!!! AAGTGTAAATATTTTAGAAC+TGG + chr4.4:9841908-9841927 MS.gene28138:intron 20.0%
!!! ACTTGTTAAGAAGTTTAAAA+AGG + chr4.4:9840781-9840800 MS.gene28138:intron 20.0%
!!! TAAATATTTGGAAGAAGTAT+TGG - chr4.4:9840731-9840750 None:intergenic 20.0%
!!! TTCACATATTTTGAAAATAG+AGG - chr4.4:9842959-9842978 None:intergenic 20.0%
! AAGGATTGAATACAATTTCA+CGG - chr4.4:9840304-9840323 None:intergenic 25.0%
! ATTTCAAAAGCTCATATTTG+TGG + chr4.4:9843164-9843183 MS.gene28138:intron 25.0%
! CAGAACATCAACATTTATAA+TGG - chr4.4:9840510-9840529 None:intergenic 25.0%
! CATTATAAATGTTGATGTTC+TGG + chr4.4:9840508-9840527 MS.gene28138:intron 25.0%
! CCTAAATAACAAAGTGAAAA+TGG + chr4.4:9841955-9841974 MS.gene28138:intron 25.0%
! CTTAAAAAGCTTATATTTGC+AGG + chr4.4:9843219-9843238 MS.gene28138:intron 25.0%
! CTTAACAAATGACTACAAAT+TGG - chr4.4:9842783-9842802 None:intergenic 25.0%
! GATAGATAGGTATATTTACT+AGG + chr4.4:9842581-9842600 MS.gene28138:intron 25.0%
! GTATCAAATGGAATTATACA+TGG + chr4.4:9841108-9841127 MS.gene28138:intron 25.0%
! TAGTGCATATTCTTAAATCA+CGG + chr4.4:9842610-9842629 MS.gene28138:intron 25.0%
! TATATGATATGACATGAACA+CGG + chr4.4:9842695-9842714 MS.gene28138:intron 25.0%
!! AACTTTAGGGATTAAAAATG+CGG + chr4.4:9841019-9841038 MS.gene28138:CDS 25.0%
!! AAGTATATATTTTGCTACAG+AGG + chr4.4:9843028-9843047 MS.gene28138:intron 25.0%
!! CTGCAAATATAAGCTTTTTA+AGG - chr4.4:9843221-9843240 None:intergenic 25.0%
!! TACTCAGATAAATTTGGAAT+TGG - chr4.4:9841438-9841457 None:intergenic 25.0%
!! TCAAAGTACTCAGATAAATT+TGG - chr4.4:9841444-9841463 None:intergenic 25.0%
!! TTTTTCCTGATTATCAAGAA+AGG + chr4.4:9842284-9842303 MS.gene28138:CDS 25.0%
!!! CCATTTTCACTTTGTTATTT+AGG - chr4.4:9841958-9841977 None:intergenic 25.0%
!!! TATTGCTTGTTTTTTCAGAT+TGG + chr4.4:9842839-9842858 MS.gene28138:intron 25.0%
!!! TCTATTTTTGCAGTATCAAA+TGG + chr4.4:9841096-9841115 MS.gene28138:intron 25.0%
!!! TCTGCATTATGCTTTTTTTA+GGG + chr4.4:9841790-9841809 MS.gene28138:intron 25.0%
!!! TTCTGCATTATGCTTTTTTT+AGG + chr4.4:9841789-9841808 MS.gene28138:intron 25.0%
AAATGGTAGTTTATACCGTT+TGG + chr4.4:9840333-9840352 MS.gene28138:intron 30.0%
AAGTACCAATGTGAAGAAAT+AGG + chr4.4:9842807-9842826 MS.gene28138:intron 30.0%
AATATTTAACTAGTGCCCTA+AGG + chr4.4:9840895-9840914 MS.gene28138:intron 30.0%
AATGGTAGTTTATACCGTTT+GGG + chr4.4:9840334-9840353 MS.gene28138:intron 30.0%
AATGTAATGGTCAATTACCT+TGG - chr4.4:9840158-9840177 None:intergenic 30.0%
ACATATAACACAGATCTTTG+TGG + chr4.4:9841169-9841188 MS.gene28138:intron 30.0%
ACTACCATTTCAATGAACAA+AGG - chr4.4:9840323-9840342 None:intergenic 30.0%
AGAAGGTTTAACATATGACA+AGG + chr4.4:9842890-9842909 MS.gene28138:CDS 30.0%
AGGATTGAATACAATTTCAC+GGG - chr4.4:9840303-9840322 None:intergenic 30.0%
AGTAAGAAGGTGAAAACTAT+TGG - chr4.4:9842013-9842032 None:intergenic 30.0%
AGTATTTCCTTAGTGGTATT+GGG + chr4.4:9842120-9842139 MS.gene28138:CDS 30.0%
ATATCAGCCATAAAAGCAAT+AGG - chr4.4:9842348-9842367 None:intergenic 30.0%
ATATTTAACTAGTGCCCTAA+GGG + chr4.4:9840896-9840915 MS.gene28138:intron 30.0%
ATGATAAATGAGAGAGTTGA+TGG - chr4.4:9842038-9842057 None:intergenic 30.0%
CAATCCTTTGTTCATTGAAA+TGG + chr4.4:9840316-9840335 MS.gene28138:intron 30.0%
CAATGTAACAATATGTGTTG+TGG - chr4.4:9840634-9840653 None:intergenic 30.0%
GACAAAAATGCATAAACTTG+AGG - chr4.4:9843199-9843218 None:intergenic 30.0%
GTAAGAAGGTGAAAACTATT+GGG - chr4.4:9842012-9842031 None:intergenic 30.0%
GTGTTCATGTCATATCATAT+AGG - chr4.4:9842696-9842715 None:intergenic 30.0%
GTTCAGTTATATTACCCAAA+CGG - chr4.4:9840351-9840370 None:intergenic 30.0%
TAGCAATTGTTCAAAAGAAG+TGG - chr4.4:9841754-9841773 None:intergenic 30.0%
TATCAGCCATAAAAGCAATA+GGG - chr4.4:9842347-9842366 None:intergenic 30.0%
TCTTTGTACCATACTTGATT+GGG + chr4.4:9842097-9842116 MS.gene28138:CDS 30.0%
TGAAAAAGGAAATTCCATTC+TGG - chr4.4:9841698-9841717 None:intergenic 30.0%
TGTCGAATTTCACAAAATCA+TGG - chr4.4:9842641-9842660 None:intergenic 30.0%
TTAACATATGACAAGGTTGT+TGG + chr4.4:9842897-9842916 MS.gene28138:CDS 30.0%
TTCTAAACTAGTTGTCTGTT+TGG - chr4.4:9842669-9842688 None:intergenic 30.0%
TTCTTTGTACCATACTTGAT+TGG + chr4.4:9842096-9842115 MS.gene28138:CDS 30.0%
! ATGTCAATCTCATTGATGAT+AGG + chr4.4:9842517-9842536 MS.gene28138:CDS 30.0%
! CTTTACCTATTTCTTCACAT+TGG - chr4.4:9842815-9842834 None:intergenic 30.0%
! TAATTAGAGCATTAATGCTG+TGG - chr4.4:9842215-9842234 None:intergenic 30.0%
! TGATAAATGAGAGAGTTGAT+GGG - chr4.4:9842037-9842056 None:intergenic 30.0%
AAATGTTAACAAGTGCCCTT+GGG + chr4.4:9840756-9840775 MS.gene28138:intron 35.0%
AACACTTCACTTCAGATTGA+GGG + chr4.4:9840577-9840596 MS.gene28138:intron 35.0%
AACTAGTTGTCTGTTTGGAT+TGG - chr4.4:9842664-9842683 None:intergenic 35.0%
AAGTGTGGATATAGCATTCA+TGG + chr4.4:9841370-9841389 MS.gene28138:intron 35.0%
AATTTGATGTCGCAATGAAG+CGG - chr4.4:9841486-9841505 None:intergenic 35.0%
AGAGTTAAAAGAAGCCAGAA+TGG + chr4.4:9841681-9841700 MS.gene28138:intron 35.0%
AGCAACAAAATCTCACTAGA+TGG + chr4.4:9843088-9843107 MS.gene28138:CDS 35.0%
ATCAACTGAGTGAAATTGGT+TGG + chr4.4:9840434-9840453 MS.gene28138:CDS 35.0%
ATCCAGTGAATATCCCAAAA+TGG - chr4.4:9842484-9842503 None:intergenic 35.0%
CAGAAGTTTAAGAATGTCCT+TGG + chr4.4:9841873-9841892 MS.gene28138:intron 35.0%
CTACAGCTTGAAATTATGAC+TGG + chr4.4:9841572-9841591 MS.gene28138:intron 35.0%
CTTGAAAAGCTTCTCTATAG+TGG + chr4.4:9842540-9842559 MS.gene28138:CDS 35.0%
CTTGATCAACTGAGTGAAAT+TGG + chr4.4:9840430-9840449 MS.gene28138:CDS 35.0%
GAAATACTCCCAATCAAGTA+TGG - chr4.4:9842108-9842127 None:intergenic 35.0%
GAGTATTTCCTTAGTGGTAT+TGG + chr4.4:9842119-9842138 MS.gene28138:CDS 35.0%
GCAACAAAATCTCACTAGAT+GGG + chr4.4:9843089-9843108 MS.gene28138:CDS 35.0%
GGATTGAATACAATTTCACG+GGG - chr4.4:9840302-9840321 None:intergenic 35.0%
GGCATAACAAGCAAGTTAAA+AGG - chr4.4:9841937-9841956 None:intergenic 35.0%
TAACACTTCACTTCAGATTG+AGG + chr4.4:9840576-9840595 MS.gene28138:intron 35.0%
TAAGAACTACGCTTACAAGT+TGG + chr4.4:9842165-9842184 MS.gene28138:intron 35.0%
TCAAAAGCTCATATTTGTGG+AGG + chr4.4:9843167-9843186 MS.gene28138:intron 35.0%
TCAACTGAGTGAAATTGGTT+GGG + chr4.4:9840435-9840454 MS.gene28138:CDS 35.0%
TCCAGTGAATATCCCAAAAT+GGG - chr4.4:9842483-9842502 None:intergenic 35.0%
TTGATGCTAAGGAGATAGAT+AGG + chr4.4:9842568-9842587 MS.gene28138:CDS 35.0%
TTGGGATATTCACTGGATAT+TGG + chr4.4:9842486-9842505 MS.gene28138:CDS 35.0%
TTGGGTAAAGATGATGAGTA+AGG - chr4.4:9840001-9840020 None:intergenic 35.0%
! AAGCTCTGGTTGTGAATTTA+GGG - chr4.4:9840084-9840103 None:intergenic 35.0%
! AAGTAACAAAGAAGAGTGCA+AGG - chr4.4:9841278-9841297 None:intergenic 35.0%
! AGTAACAAAGAAGAGTGCAA+GGG - chr4.4:9841277-9841296 None:intergenic 35.0%
! CACTTTTCACTTATCTACCA+AGG - chr4.4:9841893-9841912 None:intergenic 35.0%
! GCAATCCTTTCTTGATAATC+AGG - chr4.4:9842292-9842311 None:intergenic 35.0%
!! AGTAGTGTTATTTGCAAGTG+TGG + chr4.4:9841355-9841374 MS.gene28138:intron 35.0%
!! TTTCTAGTTGCTTATCTGCT+TGG + chr4.4:9842453-9842472 MS.gene28138:intron 35.0%
!! TTTGGTGGTGATGATGATTA+TGG - chr4.4:9840042-9840061 None:intergenic 35.0%
AAAAGCTGCTAATAGCTGCT+TGG - chr4.4:9842258-9842277 None:intergenic 40.0%
AAATTGGTTGGGCCAAGAAA+TGG + chr4.4:9840446-9840465 MS.gene28138:CDS 40.0%
AACTGGATTCTTGGGTATTC+TGG + chr4.4:9841226-9841245 MS.gene28138:CDS 40.0%
AATGTTAACAAGTGCCCTTG+GGG + chr4.4:9840757-9840776 MS.gene28138:intron 40.0%
ACGAGGTTATACTCGATGAT+GGG + chr4.4:9840205-9840224 MS.gene28138:intron 40.0%
ACTTGTGATGCAGGTGAAAA+AGG - chr4.4:9841712-9841731 None:intergenic 40.0%
AGACAGCAATGCAGTTAAAG+AGG + chr4.4:9840405-9840424 MS.gene28138:CDS 40.0%
AGCTTGAAATTATGACTGGC+AGG + chr4.4:9841576-9841595 MS.gene28138:intron 40.0%
ATAGGGCAGTACTCAAAAAG+TGG - chr4.4:9842330-9842349 None:intergenic 40.0%
ATCTTTGCTGAGTTGTGGTT+TGG - chr4.4:9843067-9843086 None:intergenic 40.0%
ATGATGTTCGCGTATGTATC+AGG + chr4.4:9840679-9840698 MS.gene28138:intron 40.0%
ATGGTCAATTACCTTGGCAA+TGG - chr4.4:9840152-9840171 None:intergenic 40.0%
CTCACATCATTTCTGACACT+AGG - chr4.4:9841059-9841078 None:intergenic 40.0%
CTTGTTAACCAATGCCCTTA+GGG - chr4.4:9840913-9840932 None:intergenic 40.0%
GAAAATAGAGGTCTCAAACC+TGG - chr4.4:9842947-9842966 None:intergenic 40.0%
GAAATGTTAACAAGTGCCCT+TGG + chr4.4:9840755-9840774 MS.gene28138:intron 40.0%
GCATTCATGGTTTCACATTG+TGG + chr4.4:9841383-9841402 MS.gene28138:intron 40.0%
GGTGTATCTTACATGTGTTG+TGG + chr4.4:9840598-9840617 MS.gene28138:intron 40.0%
GTAGACTAAACTTGTGATGC+AGG - chr4.4:9841721-9841740 None:intergenic 40.0%
GTTGGAACAACTGGATTCTT+GGG + chr4.4:9841218-9841237 MS.gene28138:CDS 40.0%
TAGGGCAGTACTCAAAAAGT+GGG - chr4.4:9842329-9842348 None:intergenic 40.0%
TATGACATGAACACGGAATG+TGG + chr4.4:9842702-9842721 MS.gene28138:intron 40.0%
TCTTGTTAACCAATGCCCTT+AGG - chr4.4:9840914-9840933 None:intergenic 40.0%
TGATGTCTGTCGCACAAATT+TGG - chr4.4:9840985-9841004 None:intergenic 40.0%
TGATGTTGAAGCATGTTTGG+TGG - chr4.4:9840057-9840076 None:intergenic 40.0%
TTCGAGAGCTGACAACTTTA+GGG + chr4.4:9841006-9841025 MS.gene28138:CDS 40.0%
TTCTGACACTAGGAATTGCA+AGG - chr4.4:9841049-9841068 None:intergenic 40.0%
TTGCTTATTGCTATGTCCCT+TGG - chr4.4:9840541-9840560 None:intergenic 40.0%
TTTACTGTGGTTGGAACAAC+TGG + chr4.4:9841209-9841228 MS.gene28138:CDS 40.0%
! ATGTTCTGGATAGATGCCAA+GGG + chr4.4:9840522-9840541 MS.gene28138:intron 40.0%
! CAGATTGGCTGTTGTATCAA+TGG + chr4.4:9842854-9842873 MS.gene28138:intron 40.0%
! GAAGCTCTGGTTGTGAATTT+AGG - chr4.4:9840085-9840104 None:intergenic 40.0%
! GCTTTTCTCTTTACTGTGGT+TGG + chr4.4:9841200-9841219 MS.gene28138:CDS 40.0%
! GGTAGGCTTGTAGTCTTTTA+TGG + chr4.4:9841609-9841628 MS.gene28138:intron 40.0%
! GGTTGATGTTGAAGCATGTT+TGG - chr4.4:9840060-9840079 None:intergenic 40.0%
! TAATGCTTGTTGACTGATGC+AGG + chr4.4:9842065-9842084 MS.gene28138:intron 40.0%
! TCCTTAGTGGTATTGGGTAT+AGG + chr4.4:9842126-9842145 MS.gene28138:CDS 40.0%
! TTGTTGACTGATGCAGGATT+GGG + chr4.4:9842071-9842090 MS.gene28138:intron 40.0%
!! AGAGTTGATGGGAAGTAAGA+AGG - chr4.4:9842026-9842045 None:intergenic 40.0%
!! GATTGGGAGTATTTCCTTAG+TGG + chr4.4:9842113-9842132 MS.gene28138:CDS 40.0%
!! GTACTGCCCTATTGCTTTTA+TGG + chr4.4:9842338-9842357 MS.gene28138:intron 40.0%
!! TGTCTCCTCTTTGAAGTTGA+CGG + chr4.4:9841821-9841840 MS.gene28138:intron 40.0%
!!! ACCCATTTTGGGATATTCAC+TGG + chr4.4:9842479-9842498 MS.gene28138:CDS 40.0%
AACACAGATCTTTGTGGTGC+AGG + chr4.4:9841175-9841194 MS.gene28138:intron 45.0%
ACCGTACGACGTGAAACATA+TGG - chr4.4:9840481-9840500 None:intergenic 45.0%
ACTTCTTAACAAGTGCCCCA+AGG - chr4.4:9840775-9840794 None:intergenic 45.0%
ATTATGACTGGCAGGCCATT+TGG + chr4.4:9841584-9841603 MS.gene28138:intron 45.0%
CACGAGGTTATACTCGATGA+TGG + chr4.4:9840204-9840223 MS.gene28138:intron 45.0%
CGAGGTTATACTCGATGATG+GGG + chr4.4:9840206-9840225 MS.gene28138:intron 45.0%
CTCTGGTTGTGAATTTAGGG+AGG - chr4.4:9840081-9840100 None:intergenic 45.0%
CTTCGAGAGCTGACAACTTT+AGG + chr4.4:9841005-9841024 MS.gene28138:CDS 45.0%
CTTCTTAACAAGTGCCCCAA+GGG - chr4.4:9840774-9840793 None:intergenic 45.0%
CTTTGCCATCGATGCCATTA+AGG - chr4.4:9843293-9843312 None:intergenic 45.0%
GCCATATGTTTCACGTCGTA+CGG + chr4.4:9840477-9840496 MS.gene28138:CDS 45.0%
GCCTATACCCAATACCACTA+AGG - chr4.4:9842130-9842149 None:intergenic 45.0%
GGTTGGAACAACTGGATTCT+TGG + chr4.4:9841217-9841236 MS.gene28138:CDS 45.0%
GTCGATCCATGAAGCCTTAA+TGG + chr4.4:9843276-9843295 MS.gene28138:CDS 45.0%
TAGTGGTCAGCTTGATGCTA+AGG + chr4.4:9842557-9842576 MS.gene28138:CDS 45.0%
TCGATGCCATTAAGGCTTCA+TGG - chr4.4:9843285-9843304 None:intergenic 45.0%
TCTGTCGCACAAATTTGGAG+AGG - chr4.4:9840980-9840999 None:intergenic 45.0%
TCTTGATTCTGCCATTGCCA+AGG + chr4.4:9840138-9840157 MS.gene28138:CDS 45.0%
TGCTGATCTTTGCTGAGTTG+TGG - chr4.4:9843072-9843091 None:intergenic 45.0%
TGGCTGAGAACTCCATTTCT+TGG - chr4.4:9840461-9840480 None:intergenic 45.0%
TGTAAGCGTAGTTCTTACCC+AGG - chr4.4:9842162-9842181 None:intergenic 45.0%
TGTTGTATCAATGGCTGGAC+TGG + chr4.4:9842863-9842882 MS.gene28138:CDS 45.0%
TTGGCTGTTGTATCAATGGC+TGG + chr4.4:9842858-9842877 MS.gene28138:CDS 45.0%
! CTGCTTGGCTTACCCATTTT+GGG + chr4.4:9842468-9842487 MS.gene28138:CDS 45.0%
! CTTGTTGACTGATGCAGGAT+TGG + chr4.4:9842070-9842089 MS.gene28138:intron 45.0%
! GATGTTCTGGATAGATGCCA+AGG + chr4.4:9840521-9840540 MS.gene28138:intron 45.0%
! GGCAGCTTTTCTCTTTACTG+TGG + chr4.4:9841196-9841215 MS.gene28138:intron 45.0%
! TCTGCTTGGCTTACCCATTT+TGG + chr4.4:9842467-9842486 MS.gene28138:CDS 45.0%
! TGAAGCCTTAATGGCATCGA+TGG + chr4.4:9843285-9843304 MS.gene28138:CDS 45.0%
! TGCTGATCTTTTCACTCTCC+AGG + chr4.4:9842926-9842945 MS.gene28138:CDS 45.0%
! TGTTGACTGATGCAGGATTG+GGG + chr4.4:9842072-9842091 MS.gene28138:intron 45.0%
!! AATGGCATCGATGGCAAAGA+AGG + chr4.4:9843294-9843313 MS.gene28138:CDS 45.0%
!! GTCTCCTCTTTGAAGTTGAC+GGG + chr4.4:9841822-9841841 MS.gene28138:intron 45.0%
!! TGGCAGAATCAAGAGTGTTG+AGG - chr4.4:9840132-9840151 None:intergenic 45.0%
AGTGCAAGGGATACATACCC+CGG - chr4.4:9841264-9841283 None:intergenic 50.0%
CTACAAGCCTACCAGCCAAA+TGG - chr4.4:9841602-9841621 None:intergenic 50.0%
GCTGTGGCAAACACTGAAGA+GGG - chr4.4:9842199-9842218 None:intergenic 50.0%
GGATTCTTGGGTATTCTGGC+TGG + chr4.4:9841230-9841249 MS.gene28138:CDS 50.0%
GTATAGGCAGCACATCTCCT+GGG + chr4.4:9842142-9842161 MS.gene28138:CDS 50.0%
TGAGCCCGTCAACTTCAAAG+AGG - chr4.4:9841829-9841848 None:intergenic 50.0%
TGCTGTGGCAAACACTGAAG+AGG - chr4.4:9842200-9842219 None:intergenic 50.0%
! AACTAGTGCCCTAAGGGCAT+TGG + chr4.4:9840902-9840921 MS.gene28138:intron 50.0%
!! CTCGATGATGGGGAACATGA+AGG + chr4.4:9840216-9840235 MS.gene28138:intron 50.0%
GGTATAGGCAGCACATCTCC+TGG + chr4.4:9842141-9842160 MS.gene28138:CDS 55.0%
GTGCAAGGGATACATACCCC+GGG - chr4.4:9841263-9841282 None:intergenic 55.0%
TGCAGCAGAGGAAGAAGCTC+TGG - chr4.4:9840098-9840117 None:intergenic 55.0%
!! AGAGTGTTGAGGTCGACACC+AGG - chr4.4:9840121-9840140 None:intergenic 55.0%
GCTTCTTCCTCTGCTGCACC+TGG + chr4.4:9840100-9840119 MS.gene28138:CDS 60.0%
GGATACATACCCCGGGAAGC+TGG - chr4.4:9841256-9841275 None:intergenic 60.0%
TGACTGGCAGGCCATTTGGC+TGG + chr4.4:9841588-9841607 MS.gene28138:intron 60.0%
TGGCAGGCCATTTGGCTGGT+AGG + chr4.4:9841592-9841611 MS.gene28138:intron 60.0%
! ATTCTGGCTGGCCAGCTTCC+CGG + chr4.4:9841242-9841261 MS.gene28138:CDS 60.0%
!! ATGGCTGGACTGGCAGCAGA+AGG + chr4.4:9842873-9842892 MS.gene28138:CDS 60.0%
GTCGACACCAGGTGCAGCAG+AGG - chr4.4:9840110-9840129 None:intergenic 65.0%
! TTCTGGCTGGCCAGCTTCCC+GGG + chr4.4:9841243-9841262 MS.gene28138:CDS 65.0%
! TCTGGCTGGCCAGCTTCCCG+GGG + chr4.4:9841244-9841263 MS.gene28138:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 9839995 9843360 9839995 ID=MS.gene28138
chr4.4 mRNA 9839995 9843360 9839995 ID=MS.gene28138.t1;Parent=MS.gene28138
chr4.4 exon 9839995 9840159 9839995 ID=MS.gene28138.t1.exon1;Parent=MS.gene28138.t1
chr4.4 CDS 9839995 9840159 9839995 ID=cds.MS.gene28138.t1;Parent=MS.gene28138.t1
chr4.4 exon 9840403 9840498 9840403 ID=MS.gene28138.t1.exon2;Parent=MS.gene28138.t1
chr4.4 CDS 9840403 9840498 9840403 ID=cds.MS.gene28138.t1;Parent=MS.gene28138.t1
chr4.4 exon 9840999 9841073 9840999 ID=MS.gene28138.t1.exon3;Parent=MS.gene28138.t1
chr4.4 CDS 9840999 9841073 9840999 ID=cds.MS.gene28138.t1;Parent=MS.gene28138.t1
chr4.4 exon 9841197 9841265 9841197 ID=MS.gene28138.t1.exon4;Parent=MS.gene28138.t1
chr4.4 CDS 9841197 9841265 9841197 ID=cds.MS.gene28138.t1;Parent=MS.gene28138.t1
chr4.4 exon 9842087 9842163 9842087 ID=MS.gene28138.t1.exon5;Parent=MS.gene28138.t1
chr4.4 CDS 9842087 9842163 9842087 ID=cds.MS.gene28138.t1;Parent=MS.gene28138.t1
chr4.4 exon 9842249 9842337 9842249 ID=MS.gene28138.t1.exon6;Parent=MS.gene28138.t1
chr4.4 CDS 9842249 9842337 9842249 ID=cds.MS.gene28138.t1;Parent=MS.gene28138.t1
chr4.4 exon 9842460 9842589 9842460 ID=MS.gene28138.t1.exon7;Parent=MS.gene28138.t1
chr4.4 CDS 9842460 9842589 9842460 ID=cds.MS.gene28138.t1;Parent=MS.gene28138.t1
chr4.4 exon 9842857 9842947 9842857 ID=MS.gene28138.t1.exon8;Parent=MS.gene28138.t1
chr4.4 CDS 9842857 9842947 9842857 ID=cds.MS.gene28138.t1;Parent=MS.gene28138.t1
chr4.4 exon 9843048 9843113 9843048 ID=MS.gene28138.t1.exon9;Parent=MS.gene28138.t1
chr4.4 CDS 9843048 9843113 9843048 ID=cds.MS.gene28138.t1;Parent=MS.gene28138.t1
chr4.4 exon 9843241 9843360 9843241 ID=MS.gene28138.t1.exon10;Parent=MS.gene28138.t1
chr4.4 CDS 9843241 9843360 9843241 ID=cds.MS.gene28138.t1;Parent=MS.gene28138.t1
Gene Sequence

>MS.gene28138

ATGCCTTACTCATCATCTTTACCCAAACCATATTATAATTTTTACCATAATCATCATCACCACCAAACATGCTTCAACATCAACCTCCCTAAATTCACAACCAGAGCTTCTTCCTCTGCTGCACCTGGTGTCGACCTCAACACTCTTGATTCTGCCATTGCCAAGGTAATTGACCATTACATTTTTTATTTGAAGTTATATAAAAATTACACGAGGTTATACTCGATGATGGGGAACATGAAGGTTTTCTAAATTTCAAGTTCAAGTTAGATATTTTTTTGTTATATGCTTAAAATAAAATAATCCCCGTGAAATTGTATTCAATCCTTTGTTCATTGAAATGGTAGTTTATACCGTTTGGGTAATATAACTGAACTAACAAGTATGTAAATAAATGTGTTTGTGCAGAAAGACAGCAATGCAGTTAAAGAGGCACTTGATCAACTGAGTGAAATTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCACGTCGTACGGTTAGTGTCCATTATAAATGTTGATGTTCTGGATAGATGCCAAGGGACATAGCAATAAGCAATGCACTATATAGCACTAACACTTCACTTCAGATTGAGGGTGTATCTTACATGTGTTGTGGACTGTCGTGTCCACAACACATATTGTTACATTGAATCAATTTTCTTAAATTTTTATCGATGATGTTCGCGTATGTATCAGGCTTTCTAGTCAAGTATATTATTTTGTCCAATACTTCTTCCAAATATTTAAAGGGAAATGTTAACAAGTGCCCTTGGGGCACTTGTTAAGAAGTTTAAAAAGGAAATTTTATCTTGGGAATGATTTATTCAGCGCATTGAAAGTTTAAAAAGTAACTTTATCTACATAAAACTTGTAAATTATTTCTATATTTGAATATTTAACTAGTGCCCTAAGGGCATTGGTTAACAAGACCCATATTTAAATATTCATATGCAAGCTTCGTTATTCGTTTAACCTCTCCAAATTTGTGCGACAGACATCACTTCGAGAGCTGACAACTTTAGGGATTAAAAATGCGGAGAACCTTGCAATTCCTAGTGTCAGAAATGATGTGAGTTTTCAGAATTTCTTTCTCTATTTTTGCAGTATCAAATGGAATTATACATGGCATATGACTTTCTTGAGAATTAAGTTTTTTCAAGTACAACATATAACACAGATCTTTGTGGTGCAGGCAGCTTTTCTCTTTACTGTGGTTGGAACAACTGGATTCTTGGGTATTCTGGCTGGCCAGCTTCCCGGGGTATGTATCCCTTGCACTCTTCTTTGTTACTTTGTATGTCTGTTTGATGATCTTGTGTATGATAATCTGTTTTTAGAAATATGAAGTCTAGTAGTGTTATTTGCAAGTGTGGATATAGCATTCATGGTTTCACATTGTGGTTGTAGTCAAGCACATTTGTATATTCATTCCAATTCCAAATTTATCTGAGTACTTTGAAGTCTGCATCAAAGTGCATCCGCTTCATTGCGACATCAAATTGTATATTTTTTCGTGATTTTCAAAAGCATCACAACGTGATACTGTAGACATATCGCTTAATGTAGTCTACAGCTTGAAATTATGACTGGCAGGCCATTTGGCTGGTAGGCTTGTAGTCTTTTATGGATTATTAATGATATCTTGATAATTAGAGTTTTTTTTTAAGAAGATAATTAGAGTTAAAAGAAGCCAGAATGGAATTTCCTTTTTCACCTGCATCACAAGTTTAGTCTACATACTATATTCCACTTCTTTTGAACAATTGCTAGCAATAGTGATAATTTTCTGCATTATGCTTTTTTTAGGGTTTAGAATTGTCTCCTCTTTGAAGTTGACGGGCTCATACATTTAGCTTATGACTATTAAACAGAAGTTTAAGAATGTCCTTGGTAGATAAGTGAAAAGTGTAAATATTTTAGAACTGGATTCCTTTTAACTTGCTTGTTATGCCTAAATAACAAAGTGAAAATGGAAAATAAGTTTTGTTTGAAAATAATTTTGCTCCCAATAGTTTTCACCTTCTTACTTCCCATCAACTCTCTCATTTATCATCTGTGATTAATGCTTGTTGACTGATGCAGGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCCTTAGTGGTATTGGGTATAGGCAGCACATCTCCTGGGTAAGAACTACGCTTACAAGTTGGCAAGAATGCCCTCTTCAGTGTTTGCCACAGCATTAATGCTCTAATTAATATGTTAGTGTAGGCTTCTCCAAGCAGCTATTAGCAGCTTTTCAGTTGTTTTTCCTGATTATCAAGAAAGGATTGCTAGACATGAAGCAGCCCACTTTTTGAGTACTGCCCTATTGCTTTTATGGCTGATATTCATTCACAAAGTATCAGATATATCATATATGTCTTATCAATTTCATCATGACTCTAACTCAGCTTCTTCTTTTTGTTCATTCTATTTCTAGTTGCTTATCTGCTTGGCTTACCCATTTTGGGATATTCACTGGATATTGGAAAAGAGCATGTCAATCTCATTGATGATAGGCTTGAAAAGCTTCTCTATAGTGGTCAGCTTGATGCTAAGGAGATAGATAGGTATATTTACTAGGAAACTTTAGTGCATATTCTTAAATCACGGTAGCACCATGATTTTGTGAAATTCGACACCAATCCAAACAGACAACTAGTTTAGAAAACTCCTATATGATATGACATGAACACGGAATGTGGTGAAAATTAAGAATCATAAGACATGTCACAACTATAATAAAATGAAGAAATTATCCCAATTTGTAGTCATTTGTTAAGAACAAAGTACCAATGTGAAGAAATAGGTAAAGTTGTTATTGCTTGTTTTTTCAGATTGGCTGTTGTATCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTTGTTGGTCAATCTGCTGATCTTTTCACTCTCCAGGTTTGAGACCTCTATTTTCAAAATATGTGAATATTATTAAACTACTCACTAGTATTATTGAATCAAATAATAATTTTAAAAAGTATATATTTTGCTACAGAGGTTTATAAACAGAACCAAACCACAACTCAGCAAAGATCAGCAACAAAATCTCACTAGATGGGCAGTAAGTTCTTCTATAACACAGAGCTAGACACAAATTAGCATTGCAGATATATTTCAAAAGCTCATATTTGTGGAGGTTTAGTCCTCAAGTTTATGCATTTTTGTCCTTAAAAAGCTTATATTTGCAGGTTTTGTTCGCTGCTTCTCTATTGAAAAACAACAAGTCGATCCATGAAGCCTTAATGGCATCGATGGCAAAGAAGGCAAGTGTACTCGAGTGCATTCAAACAATCGAAAGTGAATCATAG

Protein sequence

>MS.gene28138.t1

MPYSSSLPKPYYNFYHNHHHHQTCFNINLPKFTTRASSSAAPGVDLNTLDSAIAKKDSNAVKEALDQLSEIGWAKKWSSQPYVSRRTTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGILAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPGLLQAAISSFSVVFPDYQERIARHEAAHFLIAYLLGLPILGYSLDIGKEHVNLIDDRLEKLLYSGQLDAKEIDRLAVVSMAGLAAEGLTYDKVVGQSADLFTLQRFINRTKPQLSKDQQQNLTRWAVLFAASLLKNNKSIHEALMASMAKKASVLECIQTIESES