AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66910.t1 MTR_2g055010 95.515 379 17 0 1 379 1 379 0.0 748
MS.gene66910.t1 MTR_2g054130 95.924 368 15 0 1 368 1 368 0.0 729
MS.gene66910.t1 MTR_4g019130 37.079 178 86 5 211 363 11 187 1.27e-18 83.6
MS.gene66910.t1 MTR_4g019150 34.595 185 92 7 210 368 10 191 3.77e-18 82.4
MS.gene66910.t1 MTR_7g104650 33.149 181 90 5 208 360 99 276 1.99e-17 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66910.t1 AT5G20140 73.885 314 81 1 56 368 51 364 1.26e-177 499
MS.gene66910.t1 AT5G20140 73.885 314 81 1 56 368 51 364 2.44e-177 498
MS.gene66910.t1 AT2G37970 34.737 190 85 6 210 360 41 230 2.33e-17 81.3
MS.gene66910.t1 AT3G10130 34.532 139 67 3 208 323 112 249 8.20e-15 75.1

Find 90 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTCGCAGGTATATATT+TGG 0.154800 2.3:+36989522 MS.gene66910:intron
AAATCATCATGCTTAGTAAT+TGG 0.154857 2.3:-36987451 None:intergenic
CCTCAATTTCCCAGGACTTT+TGG 0.196703 2.3:+36988777 MS.gene66910:intron
CTACAACTTGCACCACTTTC+CGG 0.208753 2.3:+36987185 MS.gene66910:CDS
CAGACCATCTTTAATGATAT+TGG 0.210028 2.3:-36990079 None:intergenic
CTCAACTAAGCTCAGCTTAA+TGG 0.235783 2.3:-36987299 None:intergenic
AAGCTAACTGTTTCTTGATT+AGG 0.251086 2.3:-36989964 None:intergenic
ACAAATGGAGACAAGCTATC+TGG 0.265343 2.3:+36989389 MS.gene66910:CDS
TGTCTGATGGAAGAACTATT+TGG 0.281044 2.3:-36989629 None:intergenic
ACTGTTTCTTGATTAGGATT+TGG 0.296904 2.3:-36989958 None:intergenic
TCCTCACCTGTTTGATGATA+AGG 0.297496 2.3:+36987384 MS.gene66910:CDS
AAACCAGAATTGGTCTTTAC+AGG 0.303338 2.3:+36988479 MS.gene66910:CDS
GTTCCTGTAAAGACCAATTC+TGG 0.315384 2.3:-36988482 None:intergenic
CTTTACAGGAACATCTGTTA+TGG 0.331343 2.3:+36988493 MS.gene66910:CDS
ATGGGTGTTAACCCAGAAAA+TGG 0.339771 2.3:+36988512 MS.gene66910:CDS
CCTCACCTGTTTGATGATAA+GGG 0.342928 2.3:+36987385 MS.gene66910:CDS
GATTTACAAGACACCAGATT+TGG 0.350699 2.3:+36988975 MS.gene66910:CDS
AACTATTTGGATTGAGACTT+TGG 0.355211 2.3:-36989616 None:intergenic
CTCTTTGTTTCTTTGTCTGA+TGG 0.379732 2.3:-36989642 None:intergenic
TATTTGGGTGATTCCAAATC+TGG 0.380267 2.3:-36988988 None:intergenic
CATCTTGTAGTTATTTCATA+AGG 0.386402 2.3:-36988422 None:intergenic
AGCCTCAGTTTCAGTTGCAT+TGG 0.396587 2.3:+36987518 MS.gene66910:CDS
ACCGGCTTTAATGATGTTGC+TGG 0.397252 2.3:+36989416 MS.gene66910:CDS
TTTACAGGAACATCTGTTAT+GGG 0.408859 2.3:+36988494 MS.gene66910:CDS
GCCTCAGTTTCAGTTGCATT+GGG 0.419471 2.3:+36987519 MS.gene66910:CDS
GCTGCAGTAATAAAGTTTAG+TGG 0.421311 2.3:+36990009 MS.gene66910:CDS
TACGGTGTCTCAGTGGTGGC+TGG 0.422994 2.3:-36987255 None:intergenic
AATCATCATGCTTAGTAATT+GGG 0.426244 2.3:-36987450 None:intergenic
TTTATTGGAAGTATTCAAAC+AGG 0.429041 2.3:+36988838 MS.gene66910:CDS
CGCTCCAATATCATTAAAGA+TGG 0.429781 2.3:+36990075 MS.gene66910:CDS
GCTTCCATGGAAACCAGAAT+TGG 0.431262 2.3:+36988469 MS.gene66910:CDS
TCGAACATGGTCCTTCATAA+TGG 0.440473 2.3:+36990146 MS.gene66910:CDS
GTGGTGCAAGTTGTAGGAAA+TGG 0.442861 2.3:-36987178 None:intergenic
GTTAGCTTGAGAAAGGTAGA+AGG 0.445389 2.3:+36989979 MS.gene66910:CDS
CGGAAAGTGGTGCAAGTTGT+AGG 0.450152 2.3:-36987184 None:intergenic
CTTGCCCGTTACAATGATCC+AGG 0.455438 2.3:+36990123 MS.gene66910:CDS
TCAGTTGCATTGGGTTAAAC+CGG 0.455907 2.3:+36987528 MS.gene66910:CDS
CCAAATATCAAATATTAAAA+CGG 0.467136 2.3:+36989004 MS.gene66910:CDS
CAATACCCTTATCATCAAAC+AGG 0.468336 2.3:-36987390 None:intergenic
TTTGGACAAGTCAATATCAA+TGG 0.477556 2.3:-36989598 None:intergenic
TGAAATTCATGCTGCTTCCA+TGG 0.477688 2.3:+36988456 MS.gene66910:CDS
CAAATGGAGACAAGCTATCT+GGG 0.479821 2.3:+36989390 MS.gene66910:CDS
TTCGCGAACAATATCCTCCA+TGG 0.485927 2.3:-36990037 None:intergenic
CATGCATATTCAAAATCAAA+TGG 0.487271 2.3:-36990196 None:intergenic
AAGACCAATTCTGGTTTCCA+TGG 0.488831 2.3:-36988473 None:intergenic
GGAGGATATTGTTCGCGAAA+AGG 0.499867 2.3:+36990041 MS.gene66910:CDS
TGGTGCAAGTTGTAGGAAAT+GGG 0.500255 2.3:-36987177 None:intergenic
TTCGTAGTAGTAGAAACAAA+TGG 0.502411 2.3:+36989374 MS.gene66910:CDS
GACAAGCTATCTGGGAATAC+CGG 0.516068 2.3:+36989398 MS.gene66910:CDS
TCAATGGCTTGAGTGAATAC+AGG 0.516246 2.3:-36989582 None:intergenic
AGAAACAGTTAGCTTGAGAA+AGG 0.518821 2.3:+36989972 MS.gene66910:CDS
TTTGTTTCTACTACTACGAA+TGG 0.522785 2.3:-36989371 None:intergenic
TTCGCGGCATACCATTATGA+AGG 0.526169 2.3:-36990157 None:intergenic
TCGACCTGGATCATTGTAAC+GGG 0.527359 2.3:-36990127 None:intergenic
GGAGGTTGGTCGCCGGAAAG+TGG 0.531539 2.3:-36987197 None:intergenic
AGAGTAGTTGTGGATGTTGA+AGG 0.536229 2.3:-36987221 None:intergenic
GAAGAAGTGGAGAGTAGTTG+TGG 0.543985 2.3:-36987231 None:intergenic
TCGCGAACAATATCCTCCAT+GGG 0.547839 2.3:-36990036 None:intergenic
CATCGGTATCTTCTCTGCTG+TGG 0.557509 2.3:-36989553 None:intergenic
AGTGGTGGCTGGAGAAGAAG+TGG 0.564881 2.3:-36987244 None:intergenic
ACCCAATGCAACTGAAACTG+AGG 0.565595 2.3:-36987520 None:intergenic
CCCAGCAACATCATTAAAGC+CGG 0.567439 2.3:-36989417 None:intergenic
CAGCAATCAAGAAGGTTTCG+CGG 0.568972 2.3:-36990173 None:intergenic
CTTATGAAATAACTACAAGA+TGG 0.569482 2.3:+36988423 MS.gene66910:CDS
TGGATGTTGAAGGCGGAGGT+TGG 0.570197 2.3:-36987211 None:intergenic
GGAGAGAATGAAAGTGGCCA+TGG 0.571341 2.3:-36987152 None:intergenic
CCGGCTTTAATGATGTTGCT+GGG 0.579992 2.3:+36989417 MS.gene66910:CDS
TTCGACCTGGATCATTGTAA+CGG 0.580924 2.3:-36990128 None:intergenic
AAAGTTTAGTGGAAAACCCA+TGG 0.583126 2.3:+36990020 MS.gene66910:CDS
ACAATGATCCAGGTCGAACA+TGG 0.586299 2.3:+36990133 MS.gene66910:CDS
TGAAGGCGGAGGTTGGTCGC+CGG 0.586760 2.3:-36987204 None:intergenic
AAAACGGACAGCAAATTATG+AGG 0.586779 2.3:+36989020 MS.gene66910:CDS
ATGAAGGACCATGTTCGACC+TGG 0.591864 2.3:-36990141 None:intergenic
TGCAAGTTGTAGGAAATGGG+TGG 0.597054 2.3:-36987174 None:intergenic
ACTAAGCATGATGATTTGAG+TGG 0.598452 2.3:+36987457 MS.gene66910:CDS
GCAAGTTGTAGGAAATGGGT+GGG 0.599564 2.3:-36987173 None:intergenic
GTTGTGGATGTTGAAGGCGG+AGG 0.602344 2.3:-36987215 None:intergenic
TCAAATGGCAGCAATCAAGA+AGG 0.603364 2.3:-36990181 None:intergenic
GTAGTTGTGGATGTTGAAGG+CGG 0.605157 2.3:-36987218 None:intergenic
GCAAGCAAACAACCAGGCTG+AGG 0.606063 2.3:-36990105 None:intergenic
CATCAGACAAAGAAACAAAG+AGG 0.609686 2.3:+36989643 MS.gene66910:CDS
GATGGTCTGAAACCTCAGCC+TGG 0.615097 2.3:+36990093 MS.gene66910:CDS
CAGCATGAATTTCATAACCA+TGG 0.617626 2.3:-36988447 None:intergenic
GTGAATACAGGAGTAGTCAT+CGG 0.628384 2.3:-36989570 None:intergenic
TGGGTGGGAGAGAATGAAAG+TGG 0.629225 2.3:-36987158 None:intergenic
CCCTTATCATCAAACAGGTG+AGG 0.643518 2.3:-36987385 None:intergenic
AGCTTGAGAAAGGTAGAAGG+AGG 0.657758 2.3:+36989982 MS.gene66910:CDS
TAACGGGCAAGCAAACAACC+AGG 0.667765 2.3:-36990111 None:intergenic
AATAACTACAAGATGGACCA+TGG 0.682550 2.3:+36988430 MS.gene66910:CDS
GTTTAGTGGAAAACCCATGG+AGG 0.746638 2.3:+36990023 MS.gene66910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATCACATTAAAT+GGG + chr2.3:36987276-36987295 MS.gene66910:CDS 10.0%
!!! ATTTAATGTGATTTTTTTTA+CGG - chr2.3:36987276-36987295 None:intergenic 10.0%
!! ATAATATTGTATGAAAATCA+AGG - chr2.3:36988201-36988220 None:intergenic 15.0%
!! CCAAATATCAAATATTAAAA+CGG + chr2.3:36989004-36989023 MS.gene66910:CDS 15.0%
!! GTAAAAAAAATCACATTAAA+TGG + chr2.3:36987275-36987294 MS.gene66910:CDS 15.0%
!! TTGTTTGTATAAAATATCAT+AGG - chr2.3:36988008-36988027 None:intergenic 15.0%
!! TTTCAGCTTATTTATATATA+GGG + chr2.3:36987664-36987683 MS.gene66910:intron 15.0%
!!! CGTTTTAATATTTGATATTT+GGG - chr2.3:36989006-36989025 None:intergenic 15.0%
!!! TGATTTTCATACAATATTAT+AGG + chr2.3:36988201-36988220 MS.gene66910:intron 15.0%
!!! TTATCTATGGTTTTAAATTT+TGG + chr2.3:36988581-36988600 MS.gene66910:intron 15.0%
!!! TTTTCAGCTTATTTATATAT+AGG + chr2.3:36987663-36987682 MS.gene66910:intron 15.0%
!! AACAAGACATAAAAAAGTTA+AGG - chr2.3:36988366-36988385 None:intergenic 20.0%
!! ATATAAATAAGCTGAAAACA+TGG - chr2.3:36987661-36987680 None:intergenic 20.0%
!! ATATCAAAAGTTAACACAAA+AGG + chr2.3:36989206-36989225 MS.gene66910:intron 20.0%
!! TTAACCACTTATAGTATTAT+CGG - chr2.3:36987856-36987875 None:intergenic 20.0%
!!! AATGACTATTTTTCATTTGA+AGG + chr2.3:36988815-36988834 MS.gene66910:CDS 20.0%
!!! CCGTTTTAATATTTGATATT+TGG - chr2.3:36989007-36989026 None:intergenic 20.0%
!!! GTTTGACTTTATTTTATCTT+TGG + chr2.3:36987808-36987827 MS.gene66910:intron 20.0%
!!! TGAATTCATTGTTTTTTTGA+TGG + chr2.3:36989325-36989344 MS.gene66910:intron 20.0%
!!! TTGAGTCATATTCATTTTTT+TGG + chr2.3:36988052-36988071 MS.gene66910:intron 20.0%
!!! TTTTTCATTTGAAGGTTTAT+TGG + chr2.3:36988823-36988842 MS.gene66910:CDS 20.0%
! AAATCATCATGCTTAGTAAT+TGG - chr2.3:36987454-36987473 None:intergenic 25.0%
! AACATATGCTTAGTAAAGAA+AGG + chr2.3:36989856-36989875 MS.gene66910:intron 25.0%
! AAGAAGAAAAAAAATGCCAA+AGG - chr2.3:36988892-36988911 None:intergenic 25.0%
! AATCATCATGCTTAGTAATT+GGG - chr2.3:36987453-36987472 None:intergenic 25.0%
! AATGTAGTAATCACATATGT+TGG - chr2.3:36988172-36988191 None:intergenic 25.0%
! ACAAAAGGATGTATCTTATA+TGG + chr2.3:36989278-36989297 MS.gene66910:intron 25.0%
! ATTTATATATAGGGTCTGTT+TGG + chr2.3:36987673-36987692 MS.gene66910:intron 25.0%
! CTTATGAAATAACTACAAGA+TGG + chr2.3:36988423-36988442 MS.gene66910:CDS 25.0%
! GAAATCACAATAATGATAGA+TGG + chr2.3:36987695-36987714 MS.gene66910:intron 25.0%
! TAAATGAAGTGGTATTATGT+CGG + chr2.3:36988737-36988756 MS.gene66910:intron 25.0%
! TACTTCAAGTCAAAAACAAA+AGG + chr2.3:36989263-36989282 MS.gene66910:intron 25.0%
! TTAACCGATAATACTATAAG+TGG + chr2.3:36987849-36987868 MS.gene66910:intron 25.0%
! TTCTTTACTAAGCATATGTT+TGG - chr2.3:36989856-36989875 None:intergenic 25.0%
!! ATTGGTGTTTATAAATGAAG+TGG + chr2.3:36988726-36988745 MS.gene66910:intron 25.0%
!! CATCTTGTAGTTATTTCATA+AGG - chr2.3:36988425-36988444 None:intergenic 25.0%
!! GTTAACTTTTGATATGTTTG+TGG - chr2.3:36989201-36989220 None:intergenic 25.0%
!!! GACTTGAAGTAGTTTTATAA+TGG - chr2.3:36989254-36989273 None:intergenic 25.0%
!!! TAATAGACTGAAACTTGTTT+TGG - chr2.3:36987892-36987911 None:intergenic 25.0%
!!! TGTTTTTTTGATGGTATAAC+AGG + chr2.3:36989334-36989353 MS.gene66910:intron 25.0%
!!! TTATGTCTTGTTTGTTCAAT+TGG + chr2.3:36988374-36988393 MS.gene66910:intron 25.0%
!!! TTGAAGTAGTTTTATAATGG+TGG - chr2.3:36989251-36989270 None:intergenic 25.0%
!!! TTTATTGGAAGTATTCAAAC+AGG + chr2.3:36988838-36988857 MS.gene66910:CDS 25.0%
!!! TTTTAAATTTTGGTTGCAGT+CGG + chr2.3:36988591-36988610 MS.gene66910:intron 25.0%
AACTATTTGGATTGAGACTT+TGG - chr2.3:36989619-36989638 None:intergenic 30.0%
AGAACTTATAGAGACAACTT+AGG + chr2.3:36987627-36987646 MS.gene66910:intron 30.0%
AGAGGAAAAAAAGAGAGAAA+CGG - chr2.3:36987724-36987743 None:intergenic 30.0%
CAATGACTAGTGTTATCAAT+TGG + chr2.3:36988708-36988727 MS.gene66910:intron 30.0%
CAGACCATCTTTAATGATAT+TGG - chr2.3:36990082-36990101 None:intergenic 30.0%
CGATAAAAATAACCCTAAGA+CGG - chr2.3:36987576-36987595 None:intergenic 30.0%
GATAAAAATAACCCTAAGAC+GGG - chr2.3:36987575-36987594 None:intergenic 30.0%
TGTTAAAAATCTTCATTCGC+AGG + chr2.3:36989511-36989530 MS.gene66910:intron 30.0%
TTCATTCGCAGGTATATATT+TGG + chr2.3:36989522-36989541 MS.gene66910:intron 30.0%
TTCGTAGTAGTAGAAACAAA+TGG + chr2.3:36989374-36989393 MS.gene66910:CDS 30.0%
TTTACAGGAACATCTGTTAT+GGG + chr2.3:36988494-36988513 MS.gene66910:CDS 30.0%
TTTGGACAAGTCAATATCAA+TGG - chr2.3:36989601-36989620 None:intergenic 30.0%
! AAGCTAACTGTTTCTTGATT+AGG - chr2.3:36989967-36989986 None:intergenic 30.0%
! ACTGTTTCTTGATTAGGATT+TGG - chr2.3:36989961-36989980 None:intergenic 30.0%
! AGTAAAGAAAGGAAGTTTTG+TGG + chr2.3:36989867-36989886 MS.gene66910:intron 30.0%
! ATTGATAACACTAGTCATTG+AGG - chr2.3:36988708-36988727 None:intergenic 30.0%
!! TTTGTTTCTACTACTACGAA+TGG - chr2.3:36989374-36989393 None:intergenic 30.0%
!!! TACAAAACTTGCCATTTTCT+GGG - chr2.3:36988526-36988545 None:intergenic 30.0%
!!! TTTAAATTTTGGTTGCAGTC+GGG + chr2.3:36988592-36988611 MS.gene66910:intron 30.0%
AAAACGGACAGCAAATTATG+AGG + chr2.3:36989020-36989039 MS.gene66910:CDS 35.0%
AAAGTTTAGTGGAAAACCCA+TGG + chr2.3:36990020-36990039 MS.gene66910:CDS 35.0%
AAGCGGGAAATCAGAAATAT+AGG - chr2.3:36989776-36989795 None:intergenic 35.0%
AATAACTACAAGATGGACCA+TGG + chr2.3:36988430-36988449 MS.gene66910:CDS 35.0%
AATTTGTCGCTCTCTATTTC+AGG + chr2.3:36989477-36989496 MS.gene66910:intron 35.0%
ACTAAGCATGATGATTTGAG+TGG + chr2.3:36987457-36987476 MS.gene66910:CDS 35.0%
ATGCAACCTTAATTGCAGTA+GGG + chr2.3:36988659-36988678 MS.gene66910:intron 35.0%
CAAAAGGTAAACTCTACCTT+TGG + chr2.3:36989150-36989169 MS.gene66910:intron 35.0%
CAATACCCTTATCATCAAAC+AGG - chr2.3:36987393-36987412 None:intergenic 35.0%
CACAAACATGGAAAACAAAC+AGG - chr2.3:36989742-36989761 None:intergenic 35.0%
CACTATGTTCATGAATGAGA+AGG - chr2.3:36989050-36989069 None:intergenic 35.0%
CAGCATGAATTTCATAACCA+TGG - chr2.3:36988450-36988469 None:intergenic 35.0%
CATCAGACAAAGAAACAAAG+AGG + chr2.3:36989643-36989662 MS.gene66910:CDS 35.0%
CGCTCCAATATCATTAAAGA+TGG + chr2.3:36990075-36990094 MS.gene66910:CDS 35.0%
CTTTACAGGAACATCTGTTA+TGG + chr2.3:36988493-36988512 MS.gene66910:CDS 35.0%
GATTTACAAGACACCAGATT+TGG + chr2.3:36988975-36988994 MS.gene66910:CDS 35.0%
GCATGAATGCTCATATCAAA+AGG + chr2.3:36989134-36989153 MS.gene66910:intron 35.0%
GCTGCAGTAATAAAGTTTAG+TGG + chr2.3:36990009-36990028 MS.gene66910:CDS 35.0%
TATAAGCTGATGACTCTGTT+TGG - chr2.3:36987780-36987799 None:intergenic 35.0%
TATTTGGGTGATTCCAAATC+TGG - chr2.3:36988991-36989010 None:intergenic 35.0%
TGGTAGAACAAACGCTTATT+TGG + chr2.3:36988307-36988326 MS.gene66910:intron 35.0%
TGTCTGATGGAAGAACTATT+TGG - chr2.3:36989632-36989651 None:intergenic 35.0%
TTACTCTTGATGTATGCCTT+TGG + chr2.3:36988873-36988892 MS.gene66910:intron 35.0%
! AACCCTTTATTTGTCTGAAG+CGG - chr2.3:36989793-36989812 None:intergenic 35.0%
! AAGCTAGCTTAACAACTATC+TGG + chr2.3:36987745-36987764 MS.gene66910:intron 35.0%
! AGAAACAGTTAGCTTGAGAA+AGG + chr2.3:36989972-36989991 MS.gene66910:CDS 35.0%
! CTATGTGTCACTATCGTATT+CGG + chr2.3:36988227-36988246 MS.gene66910:intron 35.0%
! CTCTTTGTTTCTTTGTCTGA+TGG - chr2.3:36989645-36989664 None:intergenic 35.0%
! GATTTGACATTTTGCAGTTG+AGG + chr2.3:36988953-36988972 MS.gene66910:intron 35.0%
! TAACAACTCACAGCGAATTT+TGG - chr2.3:36988926-36988945 None:intergenic 35.0%
! TTGTGGTGCAGTTTTCATAA+AGG - chr2.3:36989184-36989203 None:intergenic 35.0%
!! AAACCAGAATTGGTCTTTAC+AGG + chr2.3:36988479-36988498 MS.gene66910:CDS 35.0%
!! AAATAAAGGGTTAGTTGCCT+AGG + chr2.3:36989801-36989820 MS.gene66910:intron 35.0%
!! AATAAAGGGTTAGTTGCCTA+GGG + chr2.3:36989802-36989821 MS.gene66910:intron 35.0%
!! AGTTGTTAAGCTAGCTTTAG+AGG - chr2.3:36987742-36987761 None:intergenic 35.0%
!!! CTACAAAACTTGCCATTTTC+TGG - chr2.3:36988527-36988546 None:intergenic 35.0%
!!! TTTTTTTTACGGTGTCTCAG+TGG - chr2.3:36987265-36987284 None:intergenic 35.0%
AAGCCAAGACATGTATCTCT+TGG - chr2.3:36989715-36989734 None:intergenic 40.0%
AAGGAAAGAGAGAAACAGAC+CGG - chr2.3:36987550-36987569 None:intergenic 40.0%
AAGTTCCAACTATCCAGTAC+TGG + chr2.3:36988556-36988575 MS.gene66910:intron 40.0%
AATAACCCTAAGACGGGAAA+AGG - chr2.3:36987569-36987588 None:intergenic 40.0%
ACAAATGGAGACAAGCTATC+TGG + chr2.3:36989389-36989408 MS.gene66910:CDS 40.0%
ACCATAGATAACACCAGTAC+TGG - chr2.3:36988572-36988591 None:intergenic 40.0%
AGAGATACATGTCTTGGCTT+AGG + chr2.3:36989715-36989734 MS.gene66910:intron 40.0%
AGAGTAGTTGTGGATGTTGA+AGG - chr2.3:36987224-36987243 None:intergenic 40.0%
ATCTGACCCTACTGCAATTA+AGG - chr2.3:36988668-36988687 None:intergenic 40.0%
ATGGGTGTTAACCCAGAAAA+TGG + chr2.3:36988512-36988531 MS.gene66910:CDS 40.0%
CAAATGGAGACAAGCTATCT+GGG + chr2.3:36989390-36989409 MS.gene66910:CDS 40.0%
CATTACCACGTGTTGTACAT+AGG - chr2.3:36988131-36988150 None:intergenic 40.0%
CTCAACTAAGCTCAGCTTAA+TGG - chr2.3:36987302-36987321 None:intergenic 40.0%
CTTTAATGATGTTGCTGGGT+AGG + chr2.3:36989421-36989440 MS.gene66910:intron 40.0%
GATAGTTGGAACTTACCACA+TGG - chr2.3:36988550-36988569 None:intergenic 40.0%
GATGCAACCTTAATTGCAGT+AGG + chr2.3:36988658-36988677 MS.gene66910:intron 40.0%
GGGAAATCAGAAATATAGGC+AGG - chr2.3:36989772-36989791 None:intergenic 40.0%
GTGAATACAGGAGTAGTCAT+CGG - chr2.3:36989573-36989592 None:intergenic 40.0%
GTTCCAAGAGATACATGTCT+TGG + chr2.3:36989709-36989728 MS.gene66910:intron 40.0%
GTTCCTGTAAAGACCAATTC+TGG - chr2.3:36988485-36988504 None:intergenic 40.0%
TAGTGAATCCCAAAAGTCCT+GGG - chr2.3:36988789-36988808 None:intergenic 40.0%
TCAAATGGCAGCAATCAAGA+AGG - chr2.3:36990184-36990203 None:intergenic 40.0%
TCAATGGCTTGAGTGAATAC+AGG - chr2.3:36989585-36989604 None:intergenic 40.0%
TCAGTTGCATTGGGTTAAAC+CGG + chr2.3:36987528-36987547 MS.gene66910:CDS 40.0%
TCCCGCTTCAGACAAATAAA+GGG + chr2.3:36989788-36989807 MS.gene66910:intron 40.0%
TCGAACATGGTCCTTCATAA+TGG + chr2.3:36990146-36990165 MS.gene66910:CDS 40.0%
TCTATTAACGCAAAGCGTGT+CGG + chr2.3:36987905-36987924 MS.gene66910:intron 40.0%
TGGTGCAAGTTGTAGGAAAT+GGG - chr2.3:36987180-36987199 None:intergenic 40.0%
TTAGTGAATCCCAAAAGTCC+TGG - chr2.3:36988790-36988809 None:intergenic 40.0%
TTCCCGCTTCAGACAAATAA+AGG + chr2.3:36989787-36989806 MS.gene66910:intron 40.0%
TTCGACCTGGATCATTGTAA+CGG - chr2.3:36990131-36990150 None:intergenic 40.0%
TTCGTATTCCTCAATTTCCC+AGG + chr2.3:36988769-36988788 MS.gene66910:intron 40.0%
! ACCCTTTATTTGTCTGAAGC+GGG - chr2.3:36989792-36989811 None:intergenic 40.0%
! CATAAAGGCACAATCACCAA+AGG - chr2.3:36989169-36989188 None:intergenic 40.0%
! CCTCACCTGTTTGATGATAA+GGG + chr2.3:36987385-36987404 MS.gene66910:CDS 40.0%
! CTCAATTTCCCAGGACTTTT+GGG + chr2.3:36988778-36988797 MS.gene66910:intron 40.0%
! CTGATTGAGTTGCTATAGAC+AGG + chr2.3:36988398-36988417 MS.gene66910:intron 40.0%
! GTTAGCTTGAGAAAGGTAGA+AGG + chr2.3:36989979-36989998 MS.gene66910:CDS 40.0%
! TAACACCAGTACTGGATAGT+TGG - chr2.3:36988564-36988583 None:intergenic 40.0%
! TCCTCACCTGTTTGATGATA+AGG + chr2.3:36987384-36987403 MS.gene66910:CDS 40.0%
! TCTTTCCTTTTCCCGTCTTA+GGG + chr2.3:36987561-36987580 MS.gene66910:intron 40.0%
! TGAAATTCATGCTGCTTCCA+TGG + chr2.3:36988456-36988475 MS.gene66910:CDS 40.0%
!! AAGACCAATTCTGGTTTCCA+TGG - chr2.3:36988476-36988495 None:intergenic 40.0%
!! GACTTATGATCTCTGAAGCA+CGG - chr2.3:36987961-36987980 None:intergenic 40.0%
!! TCCAGTACTGGTGTTATCTA+TGG + chr2.3:36988568-36988587 MS.gene66910:intron 40.0%
ACAATGATCCAGGTCGAACA+TGG + chr2.3:36990133-36990152 MS.gene66910:CDS 45.0%
ACCCAATGCAACTGAAACTG+AGG - chr2.3:36987523-36987542 None:intergenic 45.0%
AGCCTCAGTTTCAGTTGCAT+TGG + chr2.3:36987518-36987537 MS.gene66910:CDS 45.0%
AGCTTGAGAAAGGTAGAAGG+AGG + chr2.3:36989982-36990001 MS.gene66910:CDS 45.0%
CAGAAATATAGGCAGGTGCA+AGG - chr2.3:36989765-36989784 None:intergenic 45.0%
CAGCAATCAAGAAGGTTTCG+CGG - chr2.3:36990176-36990195 None:intergenic 45.0%
CATGTCCTATGTACAACACG+TGG + chr2.3:36988123-36988142 MS.gene66910:intron 45.0%
CCAAAAGTCCTGGGAAATTG+AGG - chr2.3:36988780-36988799 None:intergenic 45.0%
CCCAGCAACATCATTAAAGC+CGG - chr2.3:36989420-36989439 None:intergenic 45.0%
CCCTTATCATCAAACAGGTG+AGG - chr2.3:36987388-36987407 None:intergenic 45.0%
CTACAACTTGCACCACTTTC+CGG + chr2.3:36987185-36987204 MS.gene66910:CDS 45.0%
CTGTTCATTCTTGCATCCCT+AGG - chr2.3:36989821-36989840 None:intergenic 45.0%
GAAGAAGTGGAGAGTAGTTG+TGG - chr2.3:36987234-36987253 None:intergenic 45.0%
GACAAGCTATCTGGGAATAC+CGG + chr2.3:36989398-36989417 MS.gene66910:CDS 45.0%
GCAAGTTGTAGGAAATGGGT+GGG - chr2.3:36987176-36987195 None:intergenic 45.0%
GCCTCAGTTTCAGTTGCATT+GGG + chr2.3:36987519-36987538 MS.gene66910:CDS 45.0%
GCTTCCATGGAAACCAGAAT+TGG + chr2.3:36988469-36988488 MS.gene66910:CDS 45.0%
GGAGGATATTGTTCGCGAAA+AGG + chr2.3:36990041-36990060 MS.gene66910:CDS 45.0%
GTAGTTGTGGATGTTGAAGG+CGG - chr2.3:36987221-36987240 None:intergenic 45.0%
GTGGTGCAAGTTGTAGGAAA+TGG - chr2.3:36987181-36987200 None:intergenic 45.0%
GTTTAGTGGAAAACCCATGG+AGG + chr2.3:36990023-36990042 MS.gene66910:CDS 45.0%
TCGACCTGGATCATTGTAAC+GGG - chr2.3:36990130-36990149 None:intergenic 45.0%
TCGCGAACAATATCCTCCAT+GGG - chr2.3:36990039-36990058 None:intergenic 45.0%
TGCAAGTTGTAGGAAATGGG+TGG - chr2.3:36987177-36987196 None:intergenic 45.0%
TGGGACGCACTTAATGCTAT+TGG + chr2.3:36987932-36987951 MS.gene66910:intron 45.0%
TTCGCGAACAATATCCTCCA+TGG - chr2.3:36990040-36990059 None:intergenic 45.0%
TTCGCGGCATACCATTATGA+AGG - chr2.3:36990160-36990179 None:intergenic 45.0%
! ACCGGCTTTAATGATGTTGC+TGG + chr2.3:36989416-36989435 MS.gene66910:CDS 45.0%
! CCGGCTTTAATGATGTTGCT+GGG + chr2.3:36989417-36989436 MS.gene66910:CDS 45.0%
! CCTCAATTTCCCAGGACTTT+TGG + chr2.3:36988777-36988796 MS.gene66910:intron 45.0%
! CTCTTTCCTTTTCCCGTCTT+AGG + chr2.3:36987560-36987579 MS.gene66910:intron 45.0%
! TTTTTACGGTGTCTCAGTGG+TGG - chr2.3:36987262-36987281 None:intergenic 45.0%
!! TGGCAAGTTTTGTAGCCATG+TGG + chr2.3:36988532-36988551 MS.gene66910:CDS 45.0%
!!! TTTATTGTATAATTTTTTTT+TGG + chr2.3:36988287-36988306 MS.gene66910:intron 5.0%
ATGAAGGACCATGTTCGACC+TGG - chr2.3:36990144-36990163 None:intergenic 50.0%
CATCGGTATCTTCTCTGCTG+TGG - chr2.3:36989556-36989575 None:intergenic 50.0%
CGGAAAGTGGTGCAAGTTGT+AGG - chr2.3:36987187-36987206 None:intergenic 50.0%
CTTGCCCGTTACAATGATCC+AGG + chr2.3:36990123-36990142 MS.gene66910:CDS 50.0%
TGGGTGGGAGAGAATGAAAG+TGG - chr2.3:36987161-36987180 None:intergenic 50.0%
! TAACGGGCAAGCAAACAACC+AGG - chr2.3:36990114-36990133 None:intergenic 50.0%
AGTGGTGGCTGGAGAAGAAG+TGG - chr2.3:36987247-36987266 None:intergenic 55.0%
GCAAGCAAACAACCAGGCTG+AGG - chr2.3:36990108-36990127 None:intergenic 55.0%
GCAGGTGCAAGGCACAAACA+TGG - chr2.3:36989754-36989773 None:intergenic 55.0%
GTTGTGGATGTTGAAGGCGG+AGG - chr2.3:36987218-36987237 None:intergenic 55.0%
TGGATGTTGAAGGCGGAGGT+TGG - chr2.3:36987214-36987233 None:intergenic 55.0%
! GATGGTCTGAAACCTCAGCC+TGG + chr2.3:36990093-36990112 MS.gene66910:CDS 55.0%
ACGCAAAGCGTGTCGGACAC+TGG + chr2.3:36987912-36987931 MS.gene66910:intron 60.0%
CGCAAAGCGTGTCGGACACT+GGG + chr2.3:36987913-36987932 MS.gene66910:intron 60.0%
TACGGTGTCTCAGTGGTGGC+TGG - chr2.3:36987258-36987277 None:intergenic 60.0%
! GGAGGTTGGTCGCCGGAAAG+TGG - chr2.3:36987200-36987219 None:intergenic 65.0%
! TGAAGGCGGAGGTTGGTCGC+CGG - chr2.3:36987207-36987226 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 36987154 36990203 36987154 ID=MS.gene66910
chr2.3 mRNA 36987154 36990203 36987154 ID=MS.gene66910.t1;Parent=MS.gene66910
chr2.3 exon 36987154 36987549 36987154 ID=MS.gene66910.t1.exon1;Parent=MS.gene66910.t1
chr2.3 CDS 36987154 36987549 36987154 ID=cds.MS.gene66910.t1;Parent=MS.gene66910.t1
chr2.3 exon 36988416 36988553 36988416 ID=MS.gene66910.t1.exon2;Parent=MS.gene66910.t1
chr2.3 CDS 36988416 36988553 36988416 ID=cds.MS.gene66910.t1;Parent=MS.gene66910.t1
chr2.3 exon 36988791 36988859 36988791 ID=MS.gene66910.t1.exon3;Parent=MS.gene66910.t1
chr2.3 CDS 36988791 36988859 36988791 ID=cds.MS.gene66910.t1;Parent=MS.gene66910.t1
chr2.3 exon 36988970 36989041 36988970 ID=MS.gene66910.t1.exon4;Parent=MS.gene66910.t1
chr2.3 CDS 36988970 36989041 36988970 ID=cds.MS.gene66910.t1;Parent=MS.gene66910.t1
chr2.3 exon 36989356 36989438 36989356 ID=MS.gene66910.t1.exon5;Parent=MS.gene66910.t1
chr2.3 CDS 36989356 36989438 36989356 ID=cds.MS.gene66910.t1;Parent=MS.gene66910.t1
chr2.3 exon 36989533 36989664 36989533 ID=MS.gene66910.t1.exon6;Parent=MS.gene66910.t1
chr2.3 CDS 36989533 36989664 36989533 ID=cds.MS.gene66910.t1;Parent=MS.gene66910.t1
chr2.3 exon 36989954 36990203 36989954 ID=MS.gene66910.t1.exon7;Parent=MS.gene66910.t1
chr2.3 CDS 36989954 36990203 36989954 ID=cds.MS.gene66910.t1;Parent=MS.gene66910.t1
Gene Sequence

>MS.gene66910

ATGGCCACTTTCATTCTCTCCCACCCATTTCCTACAACTTGCACCACTTTCCGGCGACCAACCTCCGCCTTCAACATCCACAACTACTCTCCACTTCTTCTCCAGCCACCACTGAGACACCGTAAAAAAAATCACATTAAATGGGCCATTAAGCTGAGCTTAGTTGAGCAGAGTACACAAAATTCGAGTTTTGATTTGCAGCAACTTGTTGCGTTTCTTTACGACGATCTTCCTCACCTGTTTGATGATAAGGGTATTGATAAAAATGCTTATGATGAACGTGTCTTCTTTCGTGACCCAATTACTAAGCATGATGATTTGAGTGGTTATCTTTTCAACATTGCTCTTCTTAAGACAATCTTTAAGCCTCAGTTTCAGTTGCATTGGGTTAAACCGGTCTGTTTCTCTCTTTCCTTTTCCCGTCTTAGGGTTATTTTTATCGACTTATTTGAACTTATCTATTGCACGTTAGAAGAACTTATAGAGACAACTTAGGACATATGTCCATGTTTTCAGCTTATTTATATATAGGGTCTGTTTGGAAATCACAATAATGATAGATGGTGTCCGTTTCTCTCTTTTTTTCCTCTAAAGCTAGCTTAACAACTATCTGGTATTTTTTACCAAACAGAGTCATCAGCTTATAAGAAAACAGTTTGACTTTATTTTATCTTTGGTTAAATAGCATAAGAATGTTAACCGATAATACTATAAGTGGTTAATTATGTTGCTTATCCAAAACAAGTTTCAGTCTATTAACGCAAAGCGTGTCGGACACTGGGACGCACTTAATGCTATTGGTGTCCGTGCTTCAGAGATCATAAGTCTATATAATCTTATTTTAATAAGCTCCTATGATATTTTATACAAACAACTTTTCACTTTTATGTAAAGATAGTTGAGTCATATTCATTTTTTTGGTTAGAGAAATAAATTTATCTATGTAGAACAAGCAATTCAGATCAATGACATGTCCTATGTACAACACGTGGTAATGTTCGAAATCTATACGAGACCAACATATGTGATTACTACATTCAATTACCTTGATTTTCATACAATATTATAGGTGTCTATGTGTCACTATCGTATTCGGTGTATGTGTATATCTCATAGTAACTTAAACATAAAAATTTATTGTATAATTTTTTTTTGGTAGAACAAACGCTTATTTGGTAAGCATTTAATTAAATTGTGTAATAAAATTCACCTTAACTTTTTTATGTCTTGTTTGTTCAATTGGACTGATTGAGTTGCTATAGACAGGACCTTATGAAATAACTACAAGATGGACCATGGTTATGAAATTCATGCTGCTTCCATGGAAACCAGAATTGGTCTTTACAGGAACATCTGTTATGGGTGTTAACCCAGAAAATGGCAAGTTTTGTAGCCATGTGGTAAGTTCCAACTATCCAGTACTGGTGTTATCTATGGTTTTAAATTTTGGTTGCAGTCGGGTCATGATTTTTTCTATCATAGAAAAATGCAGTCAAATGCTGCTGATGCAACCTTAATTGCAGTAGGGTCAGATTGCAGACATATTAAAAACCTCAATGACTAGTGTTATCAATTGGTGTTTATAAATGAAGTGGTATTATGTCGGTAATTTAACTTCGTATTCCTCAATTTCCCAGGACTTTTGGGATTCACTAAAGAAAAATGACTATTTTTCATTTGAAGGTTTATTGGAAGTATTCAAACAGGTATCATTCTATTTTACTCTTGATGTATGCCTTTGGCATTTTTTTTCTTCTTTTGTAAGTCTTCCAAAATTCGCTGTGAGTTGTTACTATGAAGATTTGACATTTTGCAGTTGAGGATTTACAAGACACCAGATTTGGAATCACCCAAATATCAAATATTAAAACGGACAGCAAATTATGAGGTCAACCTTCTCATTCATGAACATAGTGTTTTTTGTATTGATATAATTAAAATTTATCTTTGTTCTGCTATTCTGTTATGCAATGAAATTTTGCATGAATGCTCATATCAAAAGGTAAACTCTACCTTTGGTGATTGTGCCTTTATGAAAACTGCACCACAAACATATCAAAAGTTAACACAAAAGGATTAAAATCATTCTTTTAGCCACCATTATAAAACTACTTCAAGTCAAAAACAAAAGGATGTATCTTATATGGCTGAGTACGAGATTGAATTTTTAATGAATTCATTGTTTTTTTGATGGTATAACAGGTTAGACAGTATGATCCATTCGTAGTAGTAGAAACAAATGGAGACAAGCTATCTGGGAATACCGGCTTTAATGATGTTGCTGGGTAGGACTTTATACATCAAATAAATCTTTTTTTTATTTAATTTGTCGCTCTCTATTTCAGGTAATGCATACATGTTAAAAATCTTCATTCGCAGGTATATATTTGGAAAGAATTCCACAGCAGAGAAGATACCGATGACTACTCCTGTATTCACTCAAGCCATTGATATTGACTTGTCCAAAGTCTCAATCCAAATAGTTCTTCCATCAGACAAAGAAACAAAGAGGTATGTTTCTGAATTAAGCATGTTTTAAAAATTTGAACAACTTTGTTCCAAGAGATACATGTCTTGGCTTAGGACCTGTTTGTTTTCCATGTTTGTGCCTTGCACCTGCCTATATTTCTGATTTCCCGCTTCAGACAAATAAAGGGTTAGTTGCCTAGGGATGCAAGAATGAACAGTGTACTATGTTACCAAACATATGCTTAGTAAAGAAAGGAAGTTTTGTGGAAAAATTAGAGCAATATCTTTAGTTGAATTAAGATCTGCGTTTACTGTGTAATCTTTTTGACAGTTTACCAAATCCTAATCAAGAAACAGTTAGCTTGAGAAAGGTAGAAGGAGGCATTGCTGCAGTAATAAAGTTTAGTGGAAAACCCATGGAGGATATTGTTCGCGAAAAGGAGAAAATTTTACGCTCCAATATCATTAAAGATGGTCTGAAACCTCAGCCTGGTTGTTTGCTTGCCCGTTACAATGATCCAGGTCGAACATGGTCCTTCATAATGGTATGCCGCGAAACCTTCTTGATTGCTGCCATTTGA

Protein sequence

>MS.gene66910.t1

MATFILSHPFPTTCTTFRRPTSAFNIHNYSPLLLQPPLRHRKKNHIKWAIKLSLVEQSTQNSSFDLQQLVAFLYDDLPHLFDDKGIDKNAYDERVFFRDPITKHDDLSGYLFNIALLKTIFKPQFQLHWVKPTGPYEITTRWTMVMKFMLLPWKPELVFTGTSVMGVNPENGKFCSHVDFWDSLKKNDYFSFEGLLEVFKQLRIYKTPDLESPKYQILKRTANYEVRQYDPFVVVETNGDKLSGNTGFNDVAGYIFGKNSTAEKIPMTTPVFTQAIDIDLSKVSIQIVLPSDKETKSLPNPNQETVSLRKVEGGIAAVIKFSGKPMEDIVREKEKILRSNIIKDGLKPQPGCLLARYNDPGRTWSFIMVCRETFLIAAI