AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88820.t1 MTR_1g026550 96.716 335 9 1 1 335 1 333 0.0 620
MS.gene88820.t1 MTR_1g026550 95.708 233 8 1 1 233 1 231 3.05e-146 412
MS.gene88820.t1 MTR_5g097280 46.215 251 117 7 78 324 17 253 1.33e-63 202
MS.gene88820.t1 MTR_6g011870 48.133 241 113 7 85 324 24 253 1.90e-62 200
MS.gene88820.t1 MTR_4g094605 47.934 242 113 7 85 324 24 254 4.63e-62 199
MS.gene88820.t1 MTR_6g011880 47.718 241 114 7 85 324 24 253 4.90e-62 199
MS.gene88820.t1 MTR_6g012080 51.389 216 94 6 109 324 49 253 5.51e-62 199
MS.gene88820.t1 MTR_6g012110 50.901 222 98 6 103 324 43 253 8.86e-62 198
MS.gene88820.t1 MTR_6g011890 50.926 216 95 6 109 324 49 253 2.12e-61 197
MS.gene88820.t1 MTR_2g081090 46.154 221 110 3 104 324 14 225 9.95e-59 189
MS.gene88820.t1 MTR_2g081090 46.575 219 108 3 106 324 43 252 2.24e-58 189
MS.gene88820.t1 MTR_6g043600 44.298 228 96 6 97 324 21 217 4.87e-51 169
MS.gene88820.t1 MTR_6g060175 44.444 234 114 4 95 326 57 276 1.23e-49 167
MS.gene88820.t1 MTR_6g060175 42.308 234 109 5 95 326 57 266 3.24e-42 148
MS.gene88820.t1 MTR_3g101670 39.669 242 105 7 105 331 49 264 1.15e-40 143
MS.gene88820.t1 MTR_8g023790 31.868 273 142 7 72 330 24 266 1.01e-35 130
MS.gene88820.t1 MTR_6g033320 39.500 200 99 7 127 325 56 234 2.33e-35 129
MS.gene88820.t1 MTR_3g435460 38.208 212 99 8 127 330 63 250 4.51e-34 125
MS.gene88820.t1 MTR_2g042720 36.916 214 107 5 127 331 72 266 4.06e-33 124
MS.gene88820.t1 MTR_5g098785 36.245 229 106 8 128 335 68 277 9.75e-33 123
MS.gene88820.t1 MTR_5g098780 36.245 229 106 8 128 335 66 275 9.82e-33 123
MS.gene88820.t1 MTR_3g435460 37.745 204 95 8 134 329 9 188 6.41e-31 115
MS.gene88820.t1 MTR_4g015570 34.470 264 98 11 114 331 54 288 9.04e-29 112
MS.gene88820.t1 MTR_5g098770 53.333 75 35 0 255 329 17 91 2.43e-22 90.1
MS.gene88820.t1 MTR_3g070340 30.131 229 90 6 127 310 67 270 7.33e-18 82.8
MS.gene88820.t1 MTR_2g436960 48.684 76 34 2 255 330 29 99 1.28e-17 77.4
MS.gene88820.t1 MTR_0003s0060 45.333 75 36 2 255 329 22 91 5.55e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88820.t1 AT1G76570 76.744 301 63 2 37 331 28 327 2.15e-174 487
MS.gene88820.t1 AT3G27690 50.655 229 96 6 99 324 72 286 8.97e-67 212
MS.gene88820.t1 AT3G27690 50.655 229 96 6 99 324 40 254 1.07e-66 211
MS.gene88820.t1 AT2G05100 45.489 266 125 8 65 324 2 253 3.96e-65 207
MS.gene88820.t1 AT2G05070 49.782 229 98 6 99 324 39 253 5.54e-65 206
MS.gene88820.t1 AT1G29930 49.776 223 102 6 102 324 43 255 6.07e-62 199
MS.gene88820.t1 AT1G29920 49.776 223 102 6 102 324 43 255 7.86e-62 198
MS.gene88820.t1 AT1G29910 49.776 223 102 6 102 324 43 255 7.86e-62 198
MS.gene88820.t1 AT2G34430 49.123 228 106 6 97 324 37 254 2.55e-61 197
MS.gene88820.t1 AT2G34420 49.776 223 102 6 102 324 41 253 4.73e-61 196
MS.gene88820.t1 AT5G54270 46.119 219 109 3 106 324 44 253 9.99e-59 190
MS.gene88820.t1 AT2G05100 44.400 250 119 8 65 308 2 237 1.49e-53 179
MS.gene88820.t1 AT4G10340 47.297 222 97 5 109 326 62 267 4.51e-48 163
MS.gene88820.t1 AT1G45474 38.117 223 91 5 127 329 56 251 2.65e-39 139
MS.gene88820.t1 AT1G45474 38.117 223 91 5 127 329 56 251 2.65e-39 139
MS.gene88820.t1 AT3G54890 42.500 200 93 7 127 325 55 233 1.31e-37 135
MS.gene88820.t1 AT3G47470 34.979 243 123 9 96 330 36 251 4.76e-35 128
MS.gene88820.t1 AT1G19150 36.279 215 107 5 127 331 75 269 4.52e-34 126
MS.gene88820.t1 AT1G61520 35.926 270 124 11 89 335 30 273 8.81e-34 125
MS.gene88820.t1 AT1G61520 35.926 270 124 11 89 335 30 273 8.81e-34 125
MS.gene88820.t1 AT3G61470 34.234 222 116 5 120 330 53 255 3.29e-33 124
MS.gene88820.t1 AT1G61520 35.874 223 103 8 134 335 15 218 9.37e-30 113
MS.gene88820.t1 AT5G01530 34.221 263 100 10 114 331 55 289 1.43e-28 112
MS.gene88820.t1 AT3G08940 33.218 289 117 12 92 331 25 286 3.46e-28 111
MS.gene88820.t1 AT3G54890 33.333 228 85 7 99 325 38 199 1.41e-24 99.8
MS.gene88820.t1 AT3G54890 41.212 165 72 6 127 289 55 196 2.24e-23 96.7
MS.gene88820.t1 AT2G40100 32.407 216 102 9 110 310 82 268 1.26e-16 79.3
MS.gene88820.t1 AT5G28450 47.368 76 39 1 256 330 96 171 1.04e-15 74.3
MS.gene88820.t1 AT3G54890 43.529 85 41 2 127 211 55 132 1.43e-12 65.5

Find 0 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAAAAATAATTGAAAT+CGG - 6093:8371-8390 None:intergenic 10.0%
!! AAAGTGAAAGAAATAAAAAA+TGG + 6093:11113-11132 MS.gene88820:CDS 15.0%
!! TTAATGGTAAATTAAATGAA+AGG - 6093:8692-8711 None:intergenic 15.0%
!!! AGGAATTTTTTTAATGATTA+TGG + 6093:9184-9203 MS.gene88820:intron 15.0%
!!! ATTTTCTTAATTTCTTCAAA+TGG - 6093:9491-9510 None:intergenic 15.0%
!!! GGAATTTTTTTAATGATTAT+GGG + 6093:9185-9204 MS.gene88820:intron 15.0%
!!! TTATTAGATTTTTAACTTAG+TGG + 6093:10698-10717 MS.gene88820:intron 15.0%
!! AAATAAAAAGTTTCAGTAGT+TGG + 6093:10846-10865 MS.gene88820:intron 20.0%
!! AACCAAGTTATTAGATAAAT+AGG + 6093:10162-10181 MS.gene88820:intron 20.0%
!! ACCAAATAATTCTAATATTG+TGG - 6093:10081-10100 None:intergenic 20.0%
!! ACCAAGTTATTAGATAAATA+GGG + 6093:10163-10182 MS.gene88820:intron 20.0%
!! ACTCTTATTGTTAAATGTTA+AGG + 6093:10105-10124 MS.gene88820:intron 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG + 6093:9362-9381 MS.gene88820:intron 20.0%
!! ATAACATAACATAACCATAA+TGG - 6093:8619-8638 None:intergenic 20.0%
!! CAATTAATAAAGTGCAATAA+TGG - 6093:10312-10331 None:intergenic 20.0%
!! CTCTTATTGTTAAATGTTAA+GGG + 6093:10106-10125 MS.gene88820:intron 20.0%
!! TCTTATTGTTAAATGTTAAG+GGG + 6093:10107-10126 MS.gene88820:intron 20.0%
!!! AACCATAAATTTGTTTCTTT+TGG + 6093:10877-10896 MS.gene88820:intron 20.0%
!!! CTTGAATTTAAAGTGTATTT+TGG + 6093:9916-9935 MS.gene88820:intron 20.0%
!!! TTTTTTCCAATATTTGTCAA+CGG + 6093:9457-9476 MS.gene88820:intron 20.0%
! AAAAAATTCCTTATTCATGC+CGG - 6093:9175-9194 None:intergenic 25.0%
! AACAAACTTGTGTAAGATAA+AGG - 6093:8884-8903 None:intergenic 25.0%
! AATTATTGGTATAGGGATAA+GGG - 6093:10272-10291 None:intergenic 25.0%
! ACGGTAATATTATTTAAGAG+TGG - 6093:9681-9700 None:intergenic 25.0%
! ATTCTTATCATAAAACAGGT+TGG + 6093:10951-10970 MS.gene88820:intron 25.0%
! CATTCATTGTAAAAGTTTAC+CGG + 6093:9153-9172 MS.gene88820:intron 25.0%
! CTTTCATAACTCATTTGTTT+GGG + 6093:10820-10839 MS.gene88820:intron 25.0%
! GAAAATGTTTAAGGAATGAT+AGG - 6093:8432-8451 None:intergenic 25.0%
! GCCACAATATTAGAATTATT+TGG + 6093:10077-10096 MS.gene88820:intron 25.0%
! GTCCAAAAGAAACAAATTTA+TGG - 6093:10882-10901 None:intergenic 25.0%
! TCCCTATTTATCTAATAACT+TGG - 6093:10167-10186 None:intergenic 25.0%
! TGATATGAGTTTATAAAGAG+AGG - 6093:9406-9425 None:intergenic 25.0%
!! AAGTTTTCAAACCTGTTATA+TGG + 6093:9587-9606 MS.gene88820:intron 25.0%
!! AATTTTCCCTTTCTAATTAG+TGG - 6093:8936-8955 None:intergenic 25.0%
!! CATTTTCCACTAATTAGAAA+GGG + 6093:8927-8946 MS.gene88820:intron 25.0%
!! TTTTTACGAAGCAAATAAAC+TGG + 6093:10395-10414 MS.gene88820:intron 25.0%
!!! GATTTTTAACTTAGTGGTAT+TGG + 6093:10704-10723 MS.gene88820:intron 25.0%
ACAAAACTCCTCTAAATTCA+AGG + 6093:8310-8329 MS.gene88820:CDS 30.0%
ACATAGATGCCAAATATCAT+CGG + 6093:9293-9312 MS.gene88820:intron 30.0%
ACATCATCACTAACATCATA+TGG - 6093:10662-10681 None:intergenic 30.0%
AGAAATAAAAAATGGACGCT+TGG + 6093:11121-11140 MS.gene88820:CDS 30.0%
AGCTAAATTTATTCTCATGC+AGG - 6093:10356-10375 None:intergenic 30.0%
AGCTACTGTTACTACTAATT+TGG + 6093:10927-10946 MS.gene88820:intron 30.0%
ATAACATAACCATAATGGCT+TGG - 6093:8614-8633 None:intergenic 30.0%
CATCATCACTAACATCATAT+GGG - 6093:10661-10680 None:intergenic 30.0%
CATCTTGTAATGAGAAAGAA+AGG - 6093:9233-9252 None:intergenic 30.0%
CCAAAAGCTGAAAATGTTTA+AGG - 6093:8441-8460 None:intergenic 30.0%
CCTTTCTAATTAGTGGAAAA+TGG - 6093:8929-8948 None:intergenic 30.0%
CTCTTTATAAGACTTAGAGT+GGG - 6093:9751-9770 None:intergenic 30.0%
GAATTATTGGTATAGGGATA+AGG - 6093:10273-10292 None:intergenic 30.0%
GCCAAAGAATTATTGGTATA+GGG - 6093:10279-10298 None:intergenic 30.0%
GCTACTGTTACTACTAATTT+GGG + 6093:10928-10947 MS.gene88820:intron 30.0%
GCTTTCATAACTCATTTGTT+TGG + 6093:10819-10838 MS.gene88820:intron 30.0%
TAACATAACCATAATGGCTT+GGG - 6093:8613-8632 None:intergenic 30.0%
TACAAATCGAACATTTCTCA+TGG + 6093:10749-10768 MS.gene88820:intron 30.0%
TAGATAAATAGGGATGCTAA+AGG + 6093:10173-10192 MS.gene88820:intron 30.0%
TCCCTATACCAATAATTCTT+TGG + 6093:10275-10294 MS.gene88820:intron 30.0%
TGCAATATCTCAAAGCTTAA+TGG - 6093:8708-8727 None:intergenic 30.0%
TGCCAAAGAATTATTGGTAT+AGG - 6093:10280-10299 None:intergenic 30.0%
TGGGATTCTTATCATAAAAC+AGG + 6093:10947-10966 MS.gene88820:intron 30.0%
TTTCAAACCTGTTATATGGT+GGG + 6093:9591-9610 MS.gene88820:intron 30.0%
! AAACATACGAAAGCATATCA+CGG - 6093:9700-9719 None:intergenic 30.0%
! AACATTTTCAGCTTTTGGTA+TGG + 6093:8443-8462 MS.gene88820:intron 30.0%
! ATATGATGTTAGTGATGATG+TGG + 6093:10661-10680 MS.gene88820:intron 30.0%
! ATCAATTGTGTGCTTTGTTA+TGG + 6093:9528-9547 MS.gene88820:intron 30.0%
! CATGAGAATAAATTTAGCTC+AGG + 6093:10357-10376 MS.gene88820:intron 30.0%
! CCATTTTCCACTAATTAGAA+AGG + 6093:8926-8945 MS.gene88820:intron 30.0%
! CCTTAAACATTTTCAGCTTT+TGG + 6093:8438-8457 MS.gene88820:intron 30.0%
! TCAATTGTGTGCTTTGTTAT+GGG + 6093:9529-9548 MS.gene88820:intron 30.0%
! TTAGTGGTATTGGATGTATT+GGG + 6093:10714-10733 MS.gene88820:intron 30.0%
! TTTTCAAACCTGTTATATGG+TGG + 6093:9590-9609 MS.gene88820:intron 30.0%
!! AGAAAGTGCCAAAGAATTAT+TGG - 6093:10286-10305 None:intergenic 30.0%
AAACAAGATGAAGAAGAGGA+AGG - 6093:8077-8096 None:intergenic 35.0%
AAAGTTTACCGGCATGAATA+AGG + 6093:9164-9183 MS.gene88820:intron 35.0%
AACGAAACAAGATGAAGAAG+AGG - 6093:8081-8100 None:intergenic 35.0%
AAGTCCCACATTGGAAATAT+AGG - 6093:9434-9453 None:intergenic 35.0%
AAGTTAGTGACAATTTCGAC+AGG - 6093:9821-9840 None:intergenic 35.0%
AGAGAATTGATAGGCTCATA+AGG + 6093:9371-9390 MS.gene88820:intron 35.0%
AGAGTCCTATATTTCCAATG+TGG + 6093:9426-9445 MS.gene88820:intron 35.0%
AGGATCTTTGGACAGATTTA+AGG - 6093:11075-11094 None:intergenic 35.0%
ATAATATTAGCAGAGCTCAC+AGG - 6093:10600-10619 None:intergenic 35.0%
ATAGATGCCAAATATCATCG+GGG + 6093:9295-9314 MS.gene88820:intron 35.0%
ATATTTCCAATGTGGGACTT+GGG + 6093:9434-9453 MS.gene88820:intron 35.0%
CATAGATGCCAAATATCATC+GGG + 6093:9294-9313 MS.gene88820:intron 35.0%
CATATTTCCCCGATGATATT+TGG - 6093:9305-9324 None:intergenic 35.0%
CCTCTTTATAAGACTTAGAG+TGG - 6093:9752-9771 None:intergenic 35.0%
CCTGAGTTATTAGACCTATT+GGG + 6093:8768-8787 MS.gene88820:CDS 35.0%
CTATAGCTAACAGTCCATTA+GGG + 6093:8243-8262 MS.gene88820:CDS 35.0%
CTCTCATTTCATCGACAATA+GGG + 6093:9127-9146 MS.gene88820:intron 35.0%
CTTATCAGTTAGTTATGCAG+TGG - 6093:9342-9361 None:intergenic 35.0%
GAGTCCTATATTTCCAATGT+GGG + 6093:9427-9446 MS.gene88820:intron 35.0%
GGAGTCACTTCAAAGAAAAA+TGG + 6093:8265-8284 MS.gene88820:CDS 35.0%
GGATCTTTGGACAGATTTAA+GGG - 6093:11074-11093 None:intergenic 35.0%
GTAGTACCGTTGACAAATAT+TGG - 6093:9466-9485 None:intergenic 35.0%
GTATCAAGCTTAAGCTACAA+GGG + 6093:10050-10069 MS.gene88820:intron 35.0%
GTTAAATGTTAAGGGGCTAA+TGG + 6093:10114-10133 MS.gene88820:intron 35.0%
TATAGCTAACAGTCCATTAG+GGG + 6093:8244-8263 MS.gene88820:CDS 35.0%
TATATTTCCAATGTGGGACT+TGG + 6093:9433-9452 MS.gene88820:intron 35.0%
TATCAAGCTTAAGCTACAAG+GGG + 6093:10051-10070 MS.gene88820:intron 35.0%
TATTTGCCAAGTACTCCTTA+TGG + 6093:10546-10565 MS.gene88820:CDS 35.0%
TCCTGAGTTATTAGACCTAT+TGG + 6093:8767-8786 MS.gene88820:CDS 35.0%
TCGACAACACTACATAGAAT+TGG + 6093:9655-9674 MS.gene88820:intron 35.0%
TCTCTCATTTCATCGACAAT+AGG + 6093:9126-9145 MS.gene88820:intron 35.0%
TGGATACAAGCATTACCATA+AGG - 6093:10564-10583 None:intergenic 35.0%
TGGGAGATGCAAATATAACA+TGG + 6093:9204-9223 MS.gene88820:intron 35.0%
TGTATCAAGCTTAAGCTACA+AGG + 6093:10049-10068 MS.gene88820:intron 35.0%
TTCAAAAGCTTCAGGATCTT+TGG - 6093:11087-11106 None:intergenic 35.0%
TTCAAACCTGTTATATGGTG+GGG + 6093:9592-9611 MS.gene88820:intron 35.0%
TTCACTTTGTTGAACCTGTT+TGG + 6093:8796-8815 MS.gene88820:CDS 35.0%
TTTCGACAGGATAACAGTAT+TGG - 6093:9808-9827 None:intergenic 35.0%
! AAATATTTCTGCAGTTCCAC+TGG - 6093:8581-8600 None:intergenic 35.0%
! CCACTCTAAGTCTTATAAAG+AGG + 6093:9749-9768 MS.gene88820:intron 35.0%
! CTTAGTGGTATTGGATGTAT+TGG + 6093:10713-10732 MS.gene88820:intron 35.0%
! GTTCGATTTGTAGAATCGAA+AGG - 6093:10741-10760 None:intergenic 35.0%
! TCTTCATCTTGTTTCGTTAG+TGG + 6093:8083-8102 MS.gene88820:CDS 35.0%
! TGATCCACAATGTTTTGTAC+AGG - 6093:11200-11219 None:intergenic 35.0%
! TGTTATATGGTGGGGAAAAA+GGG + 6093:9600-9619 MS.gene88820:intron 35.0%
!!! TATTTTGGTATTCACCCTTG+TGG + 6093:9931-9950 MS.gene88820:intron 35.0%
AAAAAACCCAAGTCCCACAT+TGG - 6093:9443-9462 None:intergenic 40.0%
AAAGCAGTTTACAGAGGAGA+GGG - 6093:8123-8142 None:intergenic 40.0%
AATCAGAAAACTGCACTCTC+AGG - 6093:10017-10036 None:intergenic 40.0%
ACTTTGTTGAACCTGTTTGG+TGG + 6093:8799-8818 MS.gene88820:CDS 40.0%
AGAGATAGAACATGCTAACC+TGG - 6093:8845-8864 None:intergenic 40.0%
AGGAATACAGATGTCCACAA+GGG - 6093:9948-9967 None:intergenic 40.0%
AGGTCCTGTACAAAACATTG+TGG + 6093:11193-11212 MS.gene88820:CDS 40.0%
AGTCTTCCAATTTCTGACAG+GGG + 6093:10455-10474 MS.gene88820:intron 40.0%
AGTTCCCCAATGAGATATGA+TGG - 6093:8515-8534 None:intergenic 40.0%
ATATTGTGGGATTGAAGCAC+TGG + 6093:10989-11008 MS.gene88820:CDS 40.0%
ATCAGAAAACTGCACTCTCA+GGG - 6093:10016-10035 None:intergenic 40.0%
ATCTCATCTGCAATGCTTCA+TGG + 6093:8165-8184 MS.gene88820:CDS 40.0%
ATTGATAGGCTCATAAGGTG+AGG + 6093:9376-9395 MS.gene88820:intron 40.0%
CAAAGTGAAAGACTCCCAAT+AGG - 6093:8785-8804 None:intergenic 40.0%
CAAGTTGTTGTGGAAAGGAT+CGG - 6093:11228-11247 None:intergenic 40.0%
CAGAATACGCCAGATATTGT+GGG + 6093:10976-10995 MS.gene88820:CDS 40.0%
CAGATGAGATGTTGTGTTCT+GGG - 6093:8155-8174 None:intergenic 40.0%
CATCTGTATTCCTGTGTGTA+AGG + 6093:9955-9974 MS.gene88820:intron 40.0%
CCCAATAGGTCTAATAACTC+AGG - 6093:8771-8790 None:intergenic 40.0%
CTACCCATCATATCTCATTG+GGG + 6093:8508-8527 MS.gene88820:CDS 40.0%
GAAAGGACAAGAGAGAAAGA+CGG - 6093:10250-10269 None:intergenic 40.0%
GAAGCTATTCAGTTCACTTC+TGG + 6093:9724-9743 MS.gene88820:intron 40.0%
GAGTCTTCCAATTTCTGACA+GGG + 6093:10454-10473 MS.gene88820:intron 40.0%
GCTACCCATCATATCTCATT+GGG + 6093:8507-8526 MS.gene88820:CDS 40.0%
GCTATAGCTAACAGTCCATT+AGG + 6093:8242-8261 MS.gene88820:CDS 40.0%
GGTAGCCATCATACGAAATA+GGG - 6093:8493-8512 None:intergenic 40.0%
GTTAGGTTTCTTCACACAAG+CGG + 6093:11157-11176 MS.gene88820:CDS 40.0%
GTTCCCCAATGAGATATGAT+GGG - 6093:8514-8533 None:intergenic 40.0%
TCAGTTAGTTATGCAGTGGT+AGG - 6093:9338-9357 None:intergenic 40.0%
TGAGTCTTCCAATTTCTGAC+AGG + 6093:10453-10472 MS.gene88820:intron 40.0%
TGCTTCAATCCCACAATATC+TGG - 6093:10988-11007 None:intergenic 40.0%
TTCAGCTCTTCAAAAGCTTC+AGG - 6093:11095-11114 None:intergenic 40.0%
TTGGTATAGGGATAAGGGAA+AGG - 6093:10267-10286 None:intergenic 40.0%
TTTCAAGAGAACACCTACGA+AGG - 6093:10783-10802 None:intergenic 40.0%
! CATGGCTTTTAATCCTTCGT+AGG + 6093:10767-10786 MS.gene88820:intron 40.0%
! CTGTTATATGGTGGGGAAAA+AGG + 6093:9599-9618 MS.gene88820:intron 40.0%
! CTTTCCACAACAACTTGCTT+GGG + 6093:11231-11250 MS.gene88820:CDS 40.0%
! CTTTTTCCCCACCATATAAC+AGG - 6093:9601-9620 None:intergenic 40.0%
! GGTTTGAACATCTGTTGGTT+AGG - 6093:9987-10006 None:intergenic 40.0%
! TTCAGCTTTTGGTATGGACA+AGG + 6093:8449-8468 MS.gene88820:intron 40.0%
! TTGAACATCTGTTGGTTAGG+AGG - 6093:9984-10003 None:intergenic 40.0%
!! ACACTTTTCAGGATCAGCAT+GGG - 6093:9027-9046 None:intergenic 40.0%
!! AGATGTTGTGTTCTGGGTTT+TGG - 6093:8149-8168 None:intergenic 40.0%
!! ATAGCTTTGACAGCAGTGAA+AGG - 6093:8227-8246 None:intergenic 40.0%
!! ATGTTGTGTTCTGGGTTTTG+GGG - 6093:8147-8166 None:intergenic 40.0%
!! CTGATCCTGAAAAGTGTCAT+GGG + 6093:9030-9049 MS.gene88820:intron 40.0%
!! GATGTTGTGTTCTGGGTTTT+GGG - 6093:8148-8167 None:intergenic 40.0%
!! GATTATGGCTTTGACATTGC+TGG + 6093:8542-8561 MS.gene88820:CDS 40.0%
!! GCATTACCATAAGGAGTACT+TGG - 6093:10555-10574 None:intergenic 40.0%
AAACTGCACTCTCAGGGAAT+CGG - 6093:10010-10029 None:intergenic 45.0%
AAATGGACGCTTGGCAATGA+TGG + 6093:11130-11149 MS.gene88820:CDS 45.0%
AAGTACCACCCAAGCCATTA+TGG + 6093:8602-8621 MS.gene88820:intron 45.0%
AGCCTGAGCCTTGAATTTAG+AGG - 6093:8321-8340 None:intergenic 45.0%
AGTATCCCCCTGTCAGAAAT+TGG - 6093:10464-10483 None:intergenic 45.0%
ATCGGGGTTTGAACATCTGT+TGG - 6093:9992-10011 None:intergenic 45.0%
ATGTCAAAGCCATAATCCCC+AGG - 6093:8539-8558 None:intergenic 45.0%
CAAAGCAGTTTACAGAGGAG+AGG - 6093:8124-8143 None:intergenic 45.0%
CAGGAATACAGATGTCCACA+AGG - 6093:9949-9968 None:intergenic 45.0%
CCAAGCAAGTTGTTGTGGAA+AGG - 6093:11233-11252 None:intergenic 45.0%
CCACAATATCTGGCGTATTC+TGG - 6093:10978-10997 None:intergenic 45.0%
CCAGAATACGCCAGATATTG+TGG + 6093:10975-10994 MS.gene88820:CDS 45.0%
CCAGGCAGATATATTCCTAG+AGG - 6093:11017-11036 None:intergenic 45.0%
CCAGGGTAGTTTATATCACC+AGG - 6093:11035-11054 None:intergenic 45.0%
CCTGGTGATATAAACTACCC+TGG + 6093:11032-11051 MS.gene88820:CDS 45.0%
CTCCTCTAAATTCAAGGCTC+AGG + 6093:8316-8335 MS.gene88820:CDS 45.0%
CTTGGCCCTATTTCGTATGA+TGG + 6093:8485-8504 MS.gene88820:CDS 45.0%
GATCAAACAATGCTCCTCCA+GGG - 6093:11052-11071 None:intergenic 45.0%
GCAGATGAGATGTTGTGTTC+TGG - 6093:8156-8175 None:intergenic 45.0%
GGCTACCCATCATATCTCAT+TGG + 6093:8506-8525 MS.gene88820:CDS 45.0%
GGGGATACTCTAGATTACCT+TGG + 6093:10475-10494 MS.gene88820:CDS 45.0%
GGGTAGCCATCATACGAAAT+AGG - 6093:8494-8513 None:intergenic 45.0%
GGTGAACAGTACACATACCT+GGG - 6093:9787-9806 None:intergenic 45.0%
GGTGATATAAACTACCCTGG+AGG + 6093:11035-11054 MS.gene88820:CDS 45.0%
GTCTTCCAATTTCTGACAGG+GGG + 6093:10456-10475 MS.gene88820:intron 45.0%
GTTAGTTATGCAGTGGTAGG+CGG - 6093:9335-9354 None:intergenic 45.0%
TCACAGGACAAGGTGGATAA+TGG - 6093:10584-10603 None:intergenic 45.0%
TGAGATATTGCATGCTCGCT+GGG + 6093:8716-8735 MS.gene88820:CDS 45.0%
TGGTGAACAGTACACATACC+TGG - 6093:9788-9807 None:intergenic 45.0%
TTGAGATATTGCATGCTCGC+TGG + 6093:8715-8734 MS.gene88820:CDS 45.0%
! CATAACCATAATGGCTTGGG+TGG - 6093:8610-8629 None:intergenic 45.0%
! CATATGGGCTCAAAGAGTAC+TGG - 6093:10646-10665 None:intergenic 45.0%
! CCTCTAGGAATATATCTGCC+TGG + 6093:11014-11033 MS.gene88820:CDS 45.0%
! CCTTTCCACAACAACTTGCT+TGG + 6093:11230-11249 MS.gene88820:CDS 45.0%
! GAACTCCCATGACACTTTTC+AGG - 6093:9038-9057 None:intergenic 45.0%
! GCTTTTGGTATGGACAAGGT+CGG + 6093:8453-8472 MS.gene88820:intron 45.0%
!! CTTTGAAGTGACTCCCCTAA+TGG - 6093:8260-8279 None:intergenic 45.0%
!! GACACTTTTCAGGATCAGCA+TGG - 6093:9028-9047 None:intergenic 45.0%
!! GCTGATCCTGAAAAGTGTCA+TGG + 6093:9029-9048 MS.gene88820:intron 45.0%
!! GTTAAGGGGCTAATGGACTT+GGG + 6093:10121-10140 MS.gene88820:intron 45.0%
!! TGTTAAGGGGCTAATGGACT+TGG + 6093:10120-10139 MS.gene88820:intron 45.0%
!! TTGGCAATGATGGCTTGGTT+AGG + 6093:11140-11159 MS.gene88820:CDS 45.0%
AACTGCACTCTCAGGGAATC+GGG - 6093:10009-10028 None:intergenic 50.0%
ATCTCATTGGGGAACTGCCT+GGG + 6093:8519-8538 MS.gene88820:CDS 50.0%
CAGTCATTTGCGTCTGCAGA+TGG + 6093:10901-10920 MS.gene88820:intron 50.0%
CTAGATTACCTTGGCATCCC+AGG + 6093:10484-10503 MS.gene88820:CDS 50.0%
CTTCACTTAGCTGGAAGCCA+GGG + 6093:10508-10527 MS.gene88820:CDS 50.0%
GAACAGTACACATACCTGGG+AGG - 6093:9784-9803 None:intergenic 50.0%
GAACATGCTAACCTGGAGCT+TGG - 6093:8838-8857 None:intergenic 50.0%
GGATCAAACAATGCTCCTCC+AGG - 6093:11053-11072 None:intergenic 50.0%
GTGACCCAAGCAAGTTGTTG+TGG - 6093:11238-11257 None:intergenic 50.0%
TAGCAATCACAACCACTCCC+TGG - 6093:10528-10547 None:intergenic 50.0%
TATCTCATTGGGGAACTGCC+TGG + 6093:8518-8537 MS.gene88820:CDS 50.0%
TGGGCTATGCTTGCATCTGT+TGG + 6093:8735-8754 MS.gene88820:CDS 50.0%
TGGGGCAAAGCAGTTTACAG+AGG - 6093:8129-8148 None:intergenic 50.0%
TTAGCAGAGCTCACAGGACA+AGG - 6093:10594-10613 None:intergenic 50.0%
TTCCAGCTAAGTGAAGGCCT+GGG - 6093:10504-10523 None:intergenic 50.0%
! CGGTCACTACCTCTGTTTTC+TGG - 6093:8351-8370 None:intergenic 50.0%
! CGTTGGTTATTCCAAGCTCC+AGG + 6093:8824-8843 MS.gene88820:CDS 50.0%
!! ATTGAAGCACTGGAGCCTCT+AGG + 6093:10999-11018 MS.gene88820:CDS 50.0%
!! CTACCTCTGTTTTCTGGCCT+TGG - 6093:8345-8364 None:intergenic 50.0%
ACTGCACTCTCAGGGAATCG+GGG - 6093:10008-10027 None:intergenic 55.0%
AGAGGTTGTTTGCTCCTCCC+AGG + 6093:9767-9786 MS.gene88820:intron 55.0%
ATCCCAGGCCTTCACTTAGC+TGG + 6093:10499-10518 MS.gene88820:CDS 55.0%
ATTCAAGGCTCAGGCTGCCA+AGG + 6093:8325-8344 MS.gene88820:CDS 55.0%
CCTGGCTTCCAGCTAAGTGA+AGG - 6093:10510-10529 None:intergenic 55.0%
CCTTCACTTAGCTGGAAGCC+AGG + 6093:10507-10526 MS.gene88820:CDS 55.0%
CTGCAGTTCCACTGGATCCT+TGG - 6093:8573-8592 None:intergenic 55.0%
CTGCCAAGGCCAGAAAACAG+AGG + 6093:8339-8358 MS.gene88820:CDS 55.0%
CTTCCAGCTAAGTGAAGGCC+TGG - 6093:10505-10524 None:intergenic 55.0%
GAAATAGGGCCAAGCCAACG+AGG - 6093:8479-8498 None:intergenic 55.0%
GACGCTTGGCAATGATGGCT+TGG + 6093:11135-11154 MS.gene88820:CDS 55.0%
GCTTCATGGCAAGAGCTTGC+TGG + 6093:8179-8198 MS.gene88820:CDS 55.0%
GTTCCACTGGATCCTTGGCA+AGG - 6093:8568-8587 None:intergenic 55.0%
TAACCAACGCGCCACCAAAC+AGG - 6093:8813-8832 None:intergenic 55.0%
TAGGAGGTCGCCTTACACAC+AGG - 6093:9968-9987 None:intergenic 55.0%
TCTCATTGGGGAACTGCCTG+GGG + 6093:8520-8539 MS.gene88820:CDS 55.0%
! CTTCACACAAGCGGCACTGA+CGG + 6093:11166-11185 MS.gene88820:CDS 55.0%
!! TGACATTGCTGGCCTTGCCA+AGG + 6093:8553-8572 MS.gene88820:CDS 55.0%
!! TTCACACAAGCGGCACTGAC+GGG + 6093:11167-11186 MS.gene88820:CDS 55.0%
AGTGAAGGCCTGGGATGCCA+AGG - 6093:10495-10514 None:intergenic 60.0%
ATGGACAAGGTCGGCCTCGT+TGG + 6093:8462-8481 MS.gene88820:CDS 60.0%
CTTAGCTGGAAGCCAGGGAG+TGG + 6093:10513-10532 MS.gene88820:CDS 60.0%
GCAGAGCTCACAGGACAAGG+TGG - 6093:10591-10610 None:intergenic 60.0%
GGGGAACTGCCTGGGGATTA+TGG + 6093:8527-8546 MS.gene88820:CDS 60.0%
! TGGCCTTGCCAAGGATCCAG+TGG + 6093:8562-8581 MS.gene88820:CDS 60.0%
!! CAAGCGGCACTGACGGGTAA+AGG + 6093:11173-11192 MS.gene88820:CDS 60.0%
!! GAACCTGTTTGGTGGCGCGT+TGG + 6093:8807-8826 MS.gene88820:CDS 60.0%
! CAAGGTCGGCCTCGTTGGCT+TGG + 6093:8467-8486 MS.gene88820:CDS 65.0%


Chromosome Type Strat End Strand Name
6093 gene 8041 11280 8041 ID=MS.gene88820
6093 mRNA 8041 11280 8041 ID=MS.gene88820.t1;Parent=MS.gene88820
6093 exon 8041 8360 8041 ID=MS.gene88820.t1.exon1;Parent=MS.gene88820.t1
6093 CDS 8041 8360 8041 ID=cds.MS.gene88820.t1;Parent=MS.gene88820.t1
6093 exon 8454 8603 8454 ID=MS.gene88820.t1.exon2;Parent=MS.gene88820.t1
6093 CDS 8454 8603 8454 ID=cds.MS.gene88820.t1;Parent=MS.gene88820.t1
6093 exon 8713 8845 8713 ID=MS.gene88820.t1.exon3;Parent=MS.gene88820.t1
6093 CDS 8713 8845 8713 ID=cds.MS.gene88820.t1;Parent=MS.gene88820.t1
6093 exon 10475 10567 10475 ID=MS.gene88820.t1.exon4;Parent=MS.gene88820.t1
6093 CDS 10475 10567 10475 ID=cds.MS.gene88820.t1;Parent=MS.gene88820.t1
6093 exon 10969 11280 10969 ID=MS.gene88820.t1.exon5;Parent=MS.gene88820.t1
6093 CDS 10969 11280 10969 ID=cds.MS.gene88820.t1;Parent=MS.gene88820.t1
Gene Sequence

>MS.gene88820

ATGGTGTGGCTTCAACTTCAATCAGTGACGTGTCCTTCCTCTTCTTCATCTTGTTTCGTTAGTGGCTCTAGTCGCTGCTCCCTCTCCTCTGTAAACTGCTTTGCCCCAAAACCCAGAACACAACATCTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCTGTCAAAGCTATAGCTAACAGTCCATTAGGGGAGTCACTTCAAAGAAAAATGGAAGAGACTAAGCAACTTGCTGTACAAAACTCCTCTAAATTCAAGGCTCAGGCTGCCAAGGCCAGAAAACAGAGGTAGTGACCGATTTCAATTATTTTTATTCTCATTGCTGCTGCTGCTGCATCAATGAATTGTGCTCATTCCTATCATTCCTTAAACATTTTCAGCTTTTGGTATGGACAAGGTCGGCCTCGTTGGCTTGGCCCTATTTCGTATGATGGCTACCCATCATATCTCATTGGGGAACTGCCTGGGGATTATGGCTTTGACATTGCTGGCCTTGCCAAGGATCCAGTGGAACTGCAGAAATATTTCAAGTACCACCCAAGCCATTATGGTTATGTTATGTTATTATTATTGCTTCTTGAATTTTTCATTTAAATAGTTAAATAGTTAACTTGTCCTTTCATTTAATTTACCATTAAGCTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTCTCATTCCTGAGTTATTAGACCTATTGGGAGTCTTTCACTTTGTTGAACCTGTTTGGTGGCGCGTTGGTTATTCCAAGCTCCAGGTTAGCATGTTCTATCTCTCTTATCTATTTGTTCACCTTTATCTTACACAAGTTTGTTCAATTAATAATATAATTACAGTCCATTTTCCACTAATTAGAAAGGGAAAATTGTGTCTTGTTTAACAATTTCAGAAAGCTACAAATGCTCTATGACATTGCTAGTTTGCAAATGAGTATTCCCATGCTGATCCTGAAAAGTGTCATGGGAGTTCAAAAATTAATTGTAGTTTTTCACTTCTTGTGTCTTGTAGTAGTTTGTTTGATCATATTGTTGTTTTTATCTCTCATTTCATCGACAATAGGGTAGCATTCATTGTAAAAGTTTACCGGCATGAATAAGGAATTTTTTTAATGATTATGGGAGATGCAAATATAACATGGCAACCTTTCTTTCTCATTACAAGATGATCTCATGTTCTTAAGAAAAAGAAAATCTATACGCTAAGAACATAGATGCCAAATATCATCGGGGAAATATGTCTTTGTCCGCCTACCACTGCATAACTAACTGATAAGAGTTTATAAAGAGAATTGATAGGCTCATAAGGTGAGGAGTGCCTCTCTTTATAAACTCATATCAAGAGTCCTATATTTCCAATGTGGGACTTGGGTTTTTTCCAATATTTGTCAACGGTACTACGACCATTTGAAGAAATTAAGAAAATAGTAATCAGTTTTGATTATCAATTGTGTGCTTTGTTATGGGCAGCATTTTGAACACAACATCTTAGCAAACATAATAAGTTTTCAAACCTGTTATATGGTGGGGAAAAAGGGTCAAAGTGTCTTTGCTAACGATATTCAAAAGTTCGACAACACTACATAGAATTGGCCACTCTTAAATAATATTACCGTGATATGCTTTCGTATGTTTCTAAGAAGCTATTCAGTTCACTTCTGGTCCCACTCTAAGTCTTATAAAGAGGTTGTTTGCTCCTCCCAGGTATGTGTACTGTTCACCAATACTGTTATCCTGTCGAAATTGTCACTAACTTGAGTGTCAAAGTGTATCTTATCGAAATTCTCACAAACTTGAGTATCAAAGTGTATCTTATCGAAATTCTCACTAACTTGAATTTAAAGTGTATTTTGGTATTCACCCTTGTGGACATCTGTATTCCTGTGTGTAAGGCGACCTCCTAACCAACAGATGTTCAAACCCCGATTCCCTGAGAGTGCAGTTTTCTGATTGACTTTGATGCTTGTATCAAGCTTAAGCTACAAGGGGAGTGCCACAATATTAGAATTATTTGGTTATTACTCTTATTGTTAAATGTTAAGGGGCTAATGGACTTGGGCTTATAGTACTAGCACTTAACCAAGTTATTAGATAAATAGGGATGCTAAAGGTTAGTGTTTTGTTTCACATTACATCTTTCATTATACTTTCAGCATACTGAACCGTCTTTCTCTCTTGTCCTTTCCCTTATCCCTATACCAATAATTCTTTGGCACTTTCTTTTCCATTATTGCACTTTATTAATTGAAACTAGTTGATAAATTTTTACCTGCATGAGAATAAATTTAGCTCAGGCTGATGTTGTATACTTTTTTACGAAGCAAATAAACTGGTGAGTTGTAATAATGCAATTGACACTTATTACTTATGAGTCTTCCAATTTCTGACAGGGGGATACTCTAGATTACCTTGGCATCCCAGGCCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTAATGCTTGTATCCATTATCCACCTTGTCCTGTGAGCTCTGCTAATATTATTTATATCTTGTGACACTTGTCTTCCAGTACTCTTTGAGCCCATATGATGTTAGTGATGATGTGGCGTAGCACTACTAATTATTAGATTTTTAACTTAGTGGTATTGGATGTATTGGGACCTTTCGATTCTACAAATCGAACATTTCTCATGGCTTTTAATCCTTCGTAGGTGTTCTCTTGAAATTAAAGAAGTTAATTTGCTTTCATAACTCATTTGTTTGGGCTAAAATAAAAAGTTTCAGTAGTTGGAGCTGCTTAACCATAAATTTGTTTCTTTTGGACAGTCATTTGCGTCTGCAGATGGATTAGCTACTGTTACTACTAATTTGGGATTCTTATCATAAAACAGGTTGGACCAGAATACGCCAGATATTGTGGGATTGAAGCACTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCATTGTTTGATCCCTTAAATCTGTCCAAAGATCCTGAAGCTTTTGAAGAGCTGAAAGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGTTTCTTCACACAAGCGGCACTGACGGGTAAAGGTCCTGTACAAAACATTGTGGATCATATCTCCGATCCTTTCCACAACAACTTGCTTGGGTCACTCAATTCAATGAAATTACACTAG

Protein sequence

>MS.gene88820.t1

MVWLQLQSVTCPSSSSSCFVSGSSRCSLSSVNCFAPKPRTQHLICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEETKQLAVQNSSKFKAQAAKARKQSFWYGQGRPRWLGPISYDGYPSYLIGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHISDPFHNNLLGSLNSMKLH