AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24082


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24082.t1 MTR_1g026550 96.716 335 9 1 1 335 1 333 0.0 620
MS.gene24082.t1 MTR_1g026550 95.708 233 8 1 1 233 1 231 3.05e-146 412
MS.gene24082.t1 MTR_5g097280 46.215 251 117 7 78 324 17 253 1.33e-63 202
MS.gene24082.t1 MTR_6g011870 48.133 241 113 7 85 324 24 253 1.90e-62 200
MS.gene24082.t1 MTR_4g094605 47.934 242 113 7 85 324 24 254 4.63e-62 199
MS.gene24082.t1 MTR_6g011880 47.718 241 114 7 85 324 24 253 4.90e-62 199
MS.gene24082.t1 MTR_6g012080 51.389 216 94 6 109 324 49 253 5.51e-62 199
MS.gene24082.t1 MTR_6g012110 50.901 222 98 6 103 324 43 253 8.86e-62 198
MS.gene24082.t1 MTR_6g011890 50.926 216 95 6 109 324 49 253 2.12e-61 197
MS.gene24082.t1 MTR_2g081090 46.154 221 110 3 104 324 14 225 9.95e-59 189
MS.gene24082.t1 MTR_2g081090 46.575 219 108 3 106 324 43 252 2.24e-58 189
MS.gene24082.t1 MTR_6g043600 44.298 228 96 6 97 324 21 217 4.87e-51 169
MS.gene24082.t1 MTR_6g060175 44.444 234 114 4 95 326 57 276 1.23e-49 167
MS.gene24082.t1 MTR_6g060175 42.308 234 109 5 95 326 57 266 3.24e-42 148
MS.gene24082.t1 MTR_3g101670 39.669 242 105 7 105 331 49 264 1.15e-40 143
MS.gene24082.t1 MTR_8g023790 31.868 273 142 7 72 330 24 266 1.01e-35 130
MS.gene24082.t1 MTR_6g033320 39.500 200 99 7 127 325 56 234 2.33e-35 129
MS.gene24082.t1 MTR_3g435460 38.208 212 99 8 127 330 63 250 4.51e-34 125
MS.gene24082.t1 MTR_2g042720 36.916 214 107 5 127 331 72 266 4.06e-33 124
MS.gene24082.t1 MTR_5g098785 36.245 229 106 8 128 335 68 277 9.75e-33 123
MS.gene24082.t1 MTR_5g098780 36.245 229 106 8 128 335 66 275 9.82e-33 123
MS.gene24082.t1 MTR_3g435460 37.745 204 95 8 134 329 9 188 6.41e-31 115
MS.gene24082.t1 MTR_4g015570 34.470 264 98 11 114 331 54 288 9.04e-29 112
MS.gene24082.t1 MTR_5g098770 53.333 75 35 0 255 329 17 91 2.43e-22 90.1
MS.gene24082.t1 MTR_3g070340 30.131 229 90 6 127 310 67 270 7.33e-18 82.8
MS.gene24082.t1 MTR_2g436960 48.684 76 34 2 255 330 29 99 1.28e-17 77.4
MS.gene24082.t1 MTR_0003s0060 45.333 75 36 2 255 329 22 91 5.55e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24082.t1 AT1G76570 76.744 301 63 2 37 331 28 327 2.15e-174 487
MS.gene24082.t1 AT3G27690 50.655 229 96 6 99 324 72 286 8.97e-67 212
MS.gene24082.t1 AT3G27690 50.655 229 96 6 99 324 40 254 1.07e-66 211
MS.gene24082.t1 AT2G05100 45.489 266 125 8 65 324 2 253 3.96e-65 207
MS.gene24082.t1 AT2G05070 49.782 229 98 6 99 324 39 253 5.54e-65 206
MS.gene24082.t1 AT1G29930 49.776 223 102 6 102 324 43 255 6.07e-62 199
MS.gene24082.t1 AT1G29920 49.776 223 102 6 102 324 43 255 7.86e-62 198
MS.gene24082.t1 AT1G29910 49.776 223 102 6 102 324 43 255 7.86e-62 198
MS.gene24082.t1 AT2G34430 49.123 228 106 6 97 324 37 254 2.55e-61 197
MS.gene24082.t1 AT2G34420 49.776 223 102 6 102 324 41 253 4.73e-61 196
MS.gene24082.t1 AT5G54270 46.119 219 109 3 106 324 44 253 9.99e-59 190
MS.gene24082.t1 AT2G05100 44.400 250 119 8 65 308 2 237 1.49e-53 179
MS.gene24082.t1 AT4G10340 47.297 222 97 5 109 326 62 267 4.51e-48 163
MS.gene24082.t1 AT1G45474 38.117 223 91 5 127 329 56 251 2.65e-39 139
MS.gene24082.t1 AT1G45474 38.117 223 91 5 127 329 56 251 2.65e-39 139
MS.gene24082.t1 AT3G54890 42.500 200 93 7 127 325 55 233 1.31e-37 135
MS.gene24082.t1 AT3G47470 34.979 243 123 9 96 330 36 251 4.76e-35 128
MS.gene24082.t1 AT1G19150 36.279 215 107 5 127 331 75 269 4.52e-34 126
MS.gene24082.t1 AT1G61520 35.926 270 124 11 89 335 30 273 8.81e-34 125
MS.gene24082.t1 AT1G61520 35.926 270 124 11 89 335 30 273 8.81e-34 125
MS.gene24082.t1 AT3G61470 34.234 222 116 5 120 330 53 255 3.29e-33 124
MS.gene24082.t1 AT1G61520 35.874 223 103 8 134 335 15 218 9.37e-30 113
MS.gene24082.t1 AT5G01530 34.221 263 100 10 114 331 55 289 1.43e-28 112
MS.gene24082.t1 AT3G08940 33.218 289 117 12 92 331 25 286 3.46e-28 111
MS.gene24082.t1 AT3G54890 33.333 228 85 7 99 325 38 199 1.41e-24 99.8
MS.gene24082.t1 AT3G54890 41.212 165 72 6 127 289 55 196 2.24e-23 96.7
MS.gene24082.t1 AT2G40100 32.407 216 102 9 110 310 82 268 1.26e-16 79.3
MS.gene24082.t1 AT5G28450 47.368 76 39 1 256 330 96 171 1.04e-15 74.3
MS.gene24082.t1 AT3G54890 43.529 85 41 2 127 211 55 132 1.43e-12 65.5

Find 0 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAAAAATAATTGAAAT+CGG + 6096:1932-1951 MS.gene24082:intergenic 10.0%
!! AAAGTGAAAGAAATAAAAAA+TGG - 6096:4674-4693 MS.gene24082:CDS 15.0%
!! TTAATGGTAAATTAAATGAA+AGG + 6096:2253-2272 MS.gene24082:intergenic 15.0%
!!! AGGAATTTTTTTAATGATTA+TGG - 6096:2745-2764 MS.gene24082:intron 15.0%
!!! ATTTTCTTAATTTCTTCAAA+TGG + 6096:3052-3071 MS.gene24082:intergenic 15.0%
!!! GGAATTTTTTTAATGATTAT+GGG - 6096:2746-2765 MS.gene24082:intron 15.0%
!!! TTATTAGATTTTTAACTTAG+TGG - 6096:4259-4278 MS.gene24082:intron 15.0%
!! AAATAAAAAGTTTCAGTAGT+TGG - 6096:4407-4426 MS.gene24082:CDS 20.0%
!! AACCAAGTTATTAGATAAAT+AGG - 6096:3723-3742 MS.gene24082:intron 20.0%
!! ACCAAATAATTCTAATATTG+TGG + 6096:3642-3661 MS.gene24082:intergenic 20.0%
!! ACCAAGTTATTAGATAAATA+GGG - 6096:3724-3743 MS.gene24082:intron 20.0%
!! ACTCTTATTGTTAAATGTTA+AGG - 6096:3666-3685 MS.gene24082:intron 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG - 6096:2923-2942 MS.gene24082:intron 20.0%
!! ATAACATAACATAACCATAA+TGG + 6096:2180-2199 MS.gene24082:intergenic 20.0%
!! CAATTAATAAAGTGCAATAA+TGG + 6096:3873-3892 MS.gene24082:intergenic 20.0%
!! CTCTTATTGTTAAATGTTAA+GGG - 6096:3667-3686 MS.gene24082:intron 20.0%
!! TCTTATTGTTAAATGTTAAG+GGG - 6096:3668-3687 MS.gene24082:intron 20.0%
!!! AACCATAAATTTGTTTCTTT+TGG - 6096:4438-4457 MS.gene24082:intron 20.0%
!!! CTTGAATTTAAAGTGTATTT+TGG - 6096:3477-3496 MS.gene24082:intron 20.0%
!!! TTTTTTCCAATATTTGTCAA+CGG - 6096:3018-3037 MS.gene24082:intron 20.0%
! AAAAAATTCCTTATTCATGC+CGG + 6096:2736-2755 MS.gene24082:intergenic 25.0%
! AACAAACTTGTGTAAGATAA+AGG + 6096:2445-2464 MS.gene24082:intergenic 25.0%
! AATTATTGGTATAGGGATAA+GGG + 6096:3833-3852 MS.gene24082:intergenic 25.0%
! ACGGTAATATTATTTAAGAG+TGG + 6096:3242-3261 MS.gene24082:intergenic 25.0%
! ATTCTTATCATAAAACAGGT+TGG - 6096:4512-4531 MS.gene24082:intron 25.0%
! CATTCATTGTAAAAGTTTAC+CGG - 6096:2714-2733 MS.gene24082:intron 25.0%
! CTTTCATAACTCATTTGTTT+GGG - 6096:4381-4400 MS.gene24082:CDS 25.0%
! GAAAATGTTTAAGGAATGAT+AGG + 6096:1993-2012 MS.gene24082:intergenic 25.0%
! GCCACAATATTAGAATTATT+TGG - 6096:3638-3657 MS.gene24082:intron 25.0%
! GTCCAAAAGAAACAAATTTA+TGG + 6096:4443-4462 MS.gene24082:intergenic 25.0%
! TCCCTATTTATCTAATAACT+TGG + 6096:3728-3747 MS.gene24082:intergenic 25.0%
! TGATATGAGTTTATAAAGAG+AGG + 6096:2967-2986 MS.gene24082:intergenic 25.0%
!! AAGTTTTCAAACCTGTTATA+TGG - 6096:3148-3167 MS.gene24082:intron 25.0%
!! AATTTTCCCTTTCTAATTAG+TGG + 6096:2497-2516 MS.gene24082:intergenic 25.0%
!! CATTTTCCACTAATTAGAAA+GGG - 6096:2488-2507 MS.gene24082:intron 25.0%
!! TTTTTACGAAGCAAATAAAC+TGG - 6096:3956-3975 MS.gene24082:intron 25.0%
!!! GATTTTTAACTTAGTGGTAT+TGG - 6096:4265-4284 MS.gene24082:intron 25.0%
ACAAAACTCCTCTAAATTCA+AGG - 6096:1871-1890 MS.gene24082:CDS 30.0%
ACATAGATGCCAAATATCAT+CGG - 6096:2854-2873 MS.gene24082:intron 30.0%
ACATCATCACTAACATCATA+TGG + 6096:4223-4242 MS.gene24082:intergenic 30.0%
AGAAATAAAAAATGGACGCT+TGG - 6096:4682-4701 MS.gene24082:CDS 30.0%
AGCTAAATTTATTCTCATGC+AGG + 6096:3917-3936 MS.gene24082:intergenic 30.0%
AGCTACTGTTACTACTAATT+TGG - 6096:4488-4507 MS.gene24082:intron 30.0%
ATAACATAACCATAATGGCT+TGG + 6096:2175-2194 MS.gene24082:intergenic 30.0%
CATCATCACTAACATCATAT+GGG + 6096:4222-4241 MS.gene24082:intergenic 30.0%
CATCTTGTAATGAGAAAGAA+AGG + 6096:2794-2813 MS.gene24082:intergenic 30.0%
CCAAAAGCTGAAAATGTTTA+AGG + 6096:2002-2021 MS.gene24082:intergenic 30.0%
CCTTTCTAATTAGTGGAAAA+TGG + 6096:2490-2509 MS.gene24082:intergenic 30.0%
CTCTTTATAAGACTTAGAGT+GGG + 6096:3312-3331 MS.gene24082:intergenic 30.0%
GAATTATTGGTATAGGGATA+AGG + 6096:3834-3853 MS.gene24082:intergenic 30.0%
GCCAAAGAATTATTGGTATA+GGG + 6096:3840-3859 MS.gene24082:intergenic 30.0%
GCTACTGTTACTACTAATTT+GGG - 6096:4489-4508 MS.gene24082:intron 30.0%
GCTTTCATAACTCATTTGTT+TGG - 6096:4380-4399 MS.gene24082:CDS 30.0%
TAACATAACCATAATGGCTT+GGG + 6096:2174-2193 MS.gene24082:intergenic 30.0%
TACAAATCGAACATTTCTCA+TGG - 6096:4310-4329 MS.gene24082:CDS 30.0%
TAGATAAATAGGGATGCTAA+AGG - 6096:3734-3753 MS.gene24082:intron 30.0%
TCCCTATACCAATAATTCTT+TGG - 6096:3836-3855 MS.gene24082:intron 30.0%
TGCAATATCTCAAAGCTTAA+TGG + 6096:2269-2288 MS.gene24082:intergenic 30.0%
TGCCAAAGAATTATTGGTAT+AGG + 6096:3841-3860 MS.gene24082:intergenic 30.0%
TGGGATTCTTATCATAAAAC+AGG - 6096:4508-4527 MS.gene24082:intron 30.0%
TTTCAAACCTGTTATATGGT+GGG - 6096:3152-3171 MS.gene24082:intron 30.0%
! AAACATACGAAAGCATATCA+CGG + 6096:3261-3280 MS.gene24082:intergenic 30.0%
! AACATTTTCAGCTTTTGGTA+TGG - 6096:2004-2023 MS.gene24082:intron 30.0%
! ATATGATGTTAGTGATGATG+TGG - 6096:4222-4241 MS.gene24082:intron 30.0%
! ATCAATTGTGTGCTTTGTTA+TGG - 6096:3089-3108 MS.gene24082:intron 30.0%
! CATGAGAATAAATTTAGCTC+AGG - 6096:3918-3937 MS.gene24082:intron 30.0%
! CCATTTTCCACTAATTAGAA+AGG - 6096:2487-2506 MS.gene24082:intron 30.0%
! CCTTAAACATTTTCAGCTTT+TGG - 6096:1999-2018 MS.gene24082:intron 30.0%
! TCAATTGTGTGCTTTGTTAT+GGG - 6096:3090-3109 MS.gene24082:intron 30.0%
! TTAGTGGTATTGGATGTATT+GGG - 6096:4275-4294 MS.gene24082:intron 30.0%
! TTTTCAAACCTGTTATATGG+TGG - 6096:3151-3170 MS.gene24082:intron 30.0%
!! AGAAAGTGCCAAAGAATTAT+TGG + 6096:3847-3866 MS.gene24082:intergenic 30.0%
AAACAAGATGAAGAAGAGGA+AGG + 6096:1638-1657 MS.gene24081:intergenic 35.0%
AAAGTTTACCGGCATGAATA+AGG - 6096:2725-2744 MS.gene24082:intron 35.0%
AACGAAACAAGATGAAGAAG+AGG + 6096:1642-1661 MS.gene24082:intergenic 35.0%
AAGTCCCACATTGGAAATAT+AGG + 6096:2995-3014 MS.gene24082:intergenic 35.0%
AAGTTAGTGACAATTTCGAC+AGG + 6096:3382-3401 MS.gene24082:intergenic 35.0%
AGAGAATTGATAGGCTCATA+AGG - 6096:2932-2951 MS.gene24082:intron 35.0%
AGAGTCCTATATTTCCAATG+TGG - 6096:2987-3006 MS.gene24082:intron 35.0%
AGGATCTTTGGACAGATTTA+AGG + 6096:4636-4655 MS.gene24082:intergenic 35.0%
ATAATATTAGCAGAGCTCAC+AGG + 6096:4161-4180 MS.gene24082:intergenic 35.0%
ATAGATGCCAAATATCATCG+GGG - 6096:2856-2875 MS.gene24082:intron 35.0%
ATATTTCCAATGTGGGACTT+GGG - 6096:2995-3014 MS.gene24082:intron 35.0%
CATAGATGCCAAATATCATC+GGG - 6096:2855-2874 MS.gene24082:intron 35.0%
CATATTTCCCCGATGATATT+TGG + 6096:2866-2885 MS.gene24082:intergenic 35.0%
CCTCTTTATAAGACTTAGAG+TGG + 6096:3313-3332 MS.gene24082:intergenic 35.0%
CCTGAGTTATTAGACCTATT+GGG - 6096:2329-2348 MS.gene24082:CDS 35.0%
CTATAGCTAACAGTCCATTA+GGG - 6096:1804-1823 MS.gene24082:CDS 35.0%
CTCTCATTTCATCGACAATA+GGG - 6096:2688-2707 MS.gene24082:intron 35.0%
CTTATCAGTTAGTTATGCAG+TGG + 6096:2903-2922 MS.gene24082:intergenic 35.0%
GAGTCCTATATTTCCAATGT+GGG - 6096:2988-3007 MS.gene24082:intron 35.0%
GGAGTCACTTCAAAGAAAAA+TGG - 6096:1826-1845 MS.gene24082:CDS 35.0%
GGATCTTTGGACAGATTTAA+GGG + 6096:4635-4654 MS.gene24082:intergenic 35.0%
GTAGTACCGTTGACAAATAT+TGG + 6096:3027-3046 MS.gene24082:intergenic 35.0%
GTATCAAGCTTAAGCTACAA+GGG - 6096:3611-3630 MS.gene24082:intron 35.0%
GTTAAATGTTAAGGGGCTAA+TGG - 6096:3675-3694 MS.gene24082:intron 35.0%
TATAGCTAACAGTCCATTAG+GGG - 6096:1805-1824 MS.gene24082:CDS 35.0%
TATATTTCCAATGTGGGACT+TGG - 6096:2994-3013 MS.gene24082:intron 35.0%
TATCAAGCTTAAGCTACAAG+GGG - 6096:3612-3631 MS.gene24082:intron 35.0%
TATTTGCCAAGTACTCCTTA+TGG - 6096:4107-4126 MS.gene24082:CDS 35.0%
TCCTGAGTTATTAGACCTAT+TGG - 6096:2328-2347 MS.gene24082:CDS 35.0%
TCGACAACACTACATAGAAT+TGG - 6096:3216-3235 MS.gene24082:intron 35.0%
TCTCTCATTTCATCGACAAT+AGG - 6096:2687-2706 MS.gene24082:intron 35.0%
TGGATACAAGCATTACCATA+AGG + 6096:4125-4144 MS.gene24082:intergenic 35.0%
TGGGAGATGCAAATATAACA+TGG - 6096:2765-2784 MS.gene24082:intron 35.0%
TGTATCAAGCTTAAGCTACA+AGG - 6096:3610-3629 MS.gene24082:intron 35.0%
TTCAAAAGCTTCAGGATCTT+TGG + 6096:4648-4667 MS.gene24082:intergenic 35.0%
TTCAAACCTGTTATATGGTG+GGG - 6096:3153-3172 MS.gene24082:intron 35.0%
TTCACTTTGTTGAACCTGTT+TGG - 6096:2357-2376 MS.gene24082:CDS 35.0%
TTTCGACAGGATAACAGTAT+TGG + 6096:3369-3388 MS.gene24082:intergenic 35.0%
! AAATATTTCTGCAGTTCCAC+TGG + 6096:2142-2161 MS.gene24082:intergenic 35.0%
! CCACTCTAAGTCTTATAAAG+AGG - 6096:3310-3329 MS.gene24082:intron 35.0%
! CTTAGTGGTATTGGATGTAT+TGG - 6096:4274-4293 MS.gene24082:intron 35.0%
! GTTCGATTTGTAGAATCGAA+AGG + 6096:4302-4321 MS.gene24082:intergenic 35.0%
! TCTTCATCTTGTTTCGTTAG+TGG - 6096:1644-1663 MS.gene24082:CDS 35.0%
! TGATCCACAATGTTTTGTAC+AGG + 6096:4761-4780 MS.gene24082:intergenic 35.0%
! TGTTATATGGTGGGGAAAAA+GGG - 6096:3161-3180 MS.gene24082:intron 35.0%
!!! TATTTTGGTATTCACCCTTG+TGG - 6096:3492-3511 MS.gene24082:intron 35.0%
AAAAAACCCAAGTCCCACAT+TGG + 6096:3004-3023 MS.gene24081:intergenic 40.0%
AAAGCAGTTTACAGAGGAGA+GGG + 6096:1684-1703 MS.gene24081:intergenic 40.0%
AATCAGAAAACTGCACTCTC+AGG + 6096:3578-3597 MS.gene24082:intergenic 40.0%
ACTTTGTTGAACCTGTTTGG+TGG - 6096:2360-2379 MS.gene24082:CDS 40.0%
AGAGATAGAACATGCTAACC+TGG + 6096:2406-2425 MS.gene24082:intergenic 40.0%
AGGAATACAGATGTCCACAA+GGG + 6096:3509-3528 MS.gene24082:intergenic 40.0%
AGGTCCTGTACAAAACATTG+TGG - 6096:4754-4773 MS.gene24082:CDS 40.0%
AGTCTTCCAATTTCTGACAG+GGG - 6096:4016-4035 MS.gene24082:intron 40.0%
AGTTCCCCAATGAGATATGA+TGG + 6096:2076-2095 MS.gene24082:intergenic 40.0%
ATATTGTGGGATTGAAGCAC+TGG - 6096:4550-4569 MS.gene24082:CDS 40.0%
ATCAGAAAACTGCACTCTCA+GGG + 6096:3577-3596 MS.gene24082:intergenic 40.0%
ATCTCATCTGCAATGCTTCA+TGG - 6096:1726-1745 MS.gene24082:CDS 40.0%
ATTGATAGGCTCATAAGGTG+AGG - 6096:2937-2956 MS.gene24082:intron 40.0%
CAAAGTGAAAGACTCCCAAT+AGG + 6096:2346-2365 MS.gene24082:intergenic 40.0%
CAAGTTGTTGTGGAAAGGAT+CGG + 6096:4789-4808 MS.gene24082:intergenic 40.0%
CAGAATACGCCAGATATTGT+GGG - 6096:4537-4556 MS.gene24082:CDS 40.0%
CAGATGAGATGTTGTGTTCT+GGG + 6096:1716-1735 MS.gene24082:intergenic 40.0%
CATCTGTATTCCTGTGTGTA+AGG - 6096:3516-3535 MS.gene24082:intron 40.0%
CCCAATAGGTCTAATAACTC+AGG + 6096:2332-2351 MS.gene24082:intergenic 40.0%
CTACCCATCATATCTCATTG+GGG - 6096:2069-2088 MS.gene24082:intron 40.0%
GAAAGGACAAGAGAGAAAGA+CGG + 6096:3811-3830 MS.gene24082:intergenic 40.0%
GAAGCTATTCAGTTCACTTC+TGG - 6096:3285-3304 MS.gene24082:intron 40.0%
GAGTCTTCCAATTTCTGACA+GGG - 6096:4015-4034 MS.gene24082:intron 40.0%
GCTACCCATCATATCTCATT+GGG - 6096:2068-2087 MS.gene24082:intron 40.0%
GCTATAGCTAACAGTCCATT+AGG - 6096:1803-1822 MS.gene24082:CDS 40.0%
GGTAGCCATCATACGAAATA+GGG + 6096:2054-2073 MS.gene24082:intergenic 40.0%
GTTAGGTTTCTTCACACAAG+CGG - 6096:4718-4737 MS.gene24082:CDS 40.0%
GTTCCCCAATGAGATATGAT+GGG + 6096:2075-2094 MS.gene24082:intergenic 40.0%
TCAGTTAGTTATGCAGTGGT+AGG + 6096:2899-2918 MS.gene24082:intergenic 40.0%
TGAGTCTTCCAATTTCTGAC+AGG - 6096:4014-4033 MS.gene24082:intron 40.0%
TGCTTCAATCCCACAATATC+TGG + 6096:4549-4568 MS.gene24082:intergenic 40.0%
TTCAGCTCTTCAAAAGCTTC+AGG + 6096:4656-4675 MS.gene24082:intergenic 40.0%
TTGGTATAGGGATAAGGGAA+AGG + 6096:3828-3847 MS.gene24082:intergenic 40.0%
TTTCAAGAGAACACCTACGA+AGG + 6096:4344-4363 MS.gene24082:intergenic 40.0%
! CATGGCTTTTAATCCTTCGT+AGG - 6096:4328-4347 MS.gene24082:CDS 40.0%
! CTGTTATATGGTGGGGAAAA+AGG - 6096:3160-3179 MS.gene24082:intron 40.0%
! CTTTCCACAACAACTTGCTT+GGG - 6096:4792-4811 MS.gene24082:CDS 40.0%
! CTTTTTCCCCACCATATAAC+AGG + 6096:3162-3181 MS.gene24082:intergenic 40.0%
! GGTTTGAACATCTGTTGGTT+AGG + 6096:3548-3567 MS.gene24082:intergenic 40.0%
! TTCAGCTTTTGGTATGGACA+AGG - 6096:2010-2029 MS.gene24082:intron 40.0%
! TTGAACATCTGTTGGTTAGG+AGG + 6096:3545-3564 MS.gene24082:intergenic 40.0%
!! ACACTTTTCAGGATCAGCAT+GGG + 6096:2588-2607 MS.gene24082:intergenic 40.0%
!! AGATGTTGTGTTCTGGGTTT+TGG + 6096:1710-1729 MS.gene24082:intergenic 40.0%
!! ATAGCTTTGACAGCAGTGAA+AGG + 6096:1788-1807 MS.gene24082:intergenic 40.0%
!! ATGTTGTGTTCTGGGTTTTG+GGG + 6096:1708-1727 MS.gene24082:intergenic 40.0%
!! CTGATCCTGAAAAGTGTCAT+GGG - 6096:2591-2610 MS.gene24082:intron 40.0%
!! GATGTTGTGTTCTGGGTTTT+GGG + 6096:1709-1728 MS.gene24082:intergenic 40.0%
!! GATTATGGCTTTGACATTGC+TGG - 6096:2103-2122 MS.gene24082:intron 40.0%
!! GCATTACCATAAGGAGTACT+TGG + 6096:4116-4135 MS.gene24082:intergenic 40.0%
AAACTGCACTCTCAGGGAAT+CGG + 6096:3571-3590 MS.gene24081:intergenic 45.0%
AAATGGACGCTTGGCAATGA+TGG - 6096:4691-4710 MS.gene24082:CDS 45.0%
AAGTACCACCCAAGCCATTA+TGG - 6096:2163-2182 MS.gene24082:intron 45.0%
AGCCTGAGCCTTGAATTTAG+AGG + 6096:1882-1901 MS.gene24082:intergenic 45.0%
AGTATCCCCCTGTCAGAAAT+TGG + 6096:4025-4044 MS.gene24082:intergenic 45.0%
ATCGGGGTTTGAACATCTGT+TGG + 6096:3553-3572 MS.gene24082:intergenic 45.0%
ATGTCAAAGCCATAATCCCC+AGG + 6096:2100-2119 MS.gene24082:intergenic 45.0%
CAAAGCAGTTTACAGAGGAG+AGG + 6096:1685-1704 MS.gene24082:intergenic 45.0%
CAGGAATACAGATGTCCACA+AGG + 6096:3510-3529 MS.gene24082:intergenic 45.0%
CCAAGCAAGTTGTTGTGGAA+AGG + 6096:4794-4813 MS.gene24082:intergenic 45.0%
CCACAATATCTGGCGTATTC+TGG + 6096:4539-4558 MS.gene24082:intergenic 45.0%
CCAGAATACGCCAGATATTG+TGG - 6096:4536-4555 MS.gene24082:CDS 45.0%
CCAGGCAGATATATTCCTAG+AGG + 6096:4578-4597 MS.gene24082:intergenic 45.0%
CCAGGGTAGTTTATATCACC+AGG + 6096:4596-4615 MS.gene24082:intergenic 45.0%
CCTGGTGATATAAACTACCC+TGG - 6096:4593-4612 MS.gene24082:CDS 45.0%
CTCCTCTAAATTCAAGGCTC+AGG - 6096:1877-1896 MS.gene24082:CDS 45.0%
CTTGGCCCTATTTCGTATGA+TGG - 6096:2046-2065 MS.gene24082:intron 45.0%
GATCAAACAATGCTCCTCCA+GGG + 6096:4613-4632 MS.gene24082:intergenic 45.0%
GCAGATGAGATGTTGTGTTC+TGG + 6096:1717-1736 MS.gene24082:intergenic 45.0%
GGCTACCCATCATATCTCAT+TGG - 6096:2067-2086 MS.gene24082:intron 45.0%
GGGGATACTCTAGATTACCT+TGG - 6096:4036-4055 MS.gene24082:intron 45.0%
GGGTAGCCATCATACGAAAT+AGG + 6096:2055-2074 MS.gene24082:intergenic 45.0%
GGTGAACAGTACACATACCT+GGG + 6096:3348-3367 MS.gene24082:intergenic 45.0%
GGTGATATAAACTACCCTGG+AGG - 6096:4596-4615 MS.gene24082:CDS 45.0%
GTCTTCCAATTTCTGACAGG+GGG - 6096:4017-4036 MS.gene24082:intron 45.0%
GTTAGTTATGCAGTGGTAGG+CGG + 6096:2896-2915 MS.gene24082:intergenic 45.0%
TCACAGGACAAGGTGGATAA+TGG + 6096:4145-4164 MS.gene24082:intergenic 45.0%
TGAGATATTGCATGCTCGCT+GGG - 6096:2277-2296 MS.gene24082:intron 45.0%
TGGTGAACAGTACACATACC+TGG + 6096:3349-3368 MS.gene24082:intergenic 45.0%
TTGAGATATTGCATGCTCGC+TGG - 6096:2276-2295 MS.gene24082:intron 45.0%
! CATAACCATAATGGCTTGGG+TGG + 6096:2171-2190 MS.gene24082:intergenic 45.0%
! CATATGGGCTCAAAGAGTAC+TGG + 6096:4207-4226 MS.gene24082:intergenic 45.0%
! CCTCTAGGAATATATCTGCC+TGG - 6096:4575-4594 MS.gene24082:CDS 45.0%
! CCTTTCCACAACAACTTGCT+TGG - 6096:4791-4810 MS.gene24082:CDS 45.0%
! GAACTCCCATGACACTTTTC+AGG + 6096:2599-2618 MS.gene24082:intergenic 45.0%
! GCTTTTGGTATGGACAAGGT+CGG - 6096:2014-2033 MS.gene24082:intron 45.0%
!! CTTTGAAGTGACTCCCCTAA+TGG + 6096:1821-1840 MS.gene24082:intergenic 45.0%
!! GACACTTTTCAGGATCAGCA+TGG + 6096:2589-2608 MS.gene24082:intergenic 45.0%
!! GCTGATCCTGAAAAGTGTCA+TGG - 6096:2590-2609 MS.gene24082:intron 45.0%
!! GTTAAGGGGCTAATGGACTT+GGG - 6096:3682-3701 MS.gene24082:intron 45.0%
!! TGTTAAGGGGCTAATGGACT+TGG - 6096:3681-3700 MS.gene24082:intron 45.0%
!! TTGGCAATGATGGCTTGGTT+AGG - 6096:4701-4720 MS.gene24082:CDS 45.0%
AACTGCACTCTCAGGGAATC+GGG + 6096:3570-3589 MS.gene24082:intergenic 50.0%
ATCTCATTGGGGAACTGCCT+GGG - 6096:2080-2099 MS.gene24082:intron 50.0%
CAGTCATTTGCGTCTGCAGA+TGG - 6096:4462-4481 MS.gene24082:intron 50.0%
CTAGATTACCTTGGCATCCC+AGG - 6096:4045-4064 MS.gene24082:CDS 50.0%
CTTCACTTAGCTGGAAGCCA+GGG - 6096:4069-4088 MS.gene24082:CDS 50.0%
GAACAGTACACATACCTGGG+AGG + 6096:3345-3364 MS.gene24082:intergenic 50.0%
GAACATGCTAACCTGGAGCT+TGG + 6096:2399-2418 MS.gene24082:intergenic 50.0%
GGATCAAACAATGCTCCTCC+AGG + 6096:4614-4633 MS.gene24082:intergenic 50.0%
GTGACCCAAGCAAGTTGTTG+TGG + 6096:4799-4818 MS.gene24082:intergenic 50.0%
TAGCAATCACAACCACTCCC+TGG + 6096:4089-4108 MS.gene24082:intergenic 50.0%
TATCTCATTGGGGAACTGCC+TGG - 6096:2079-2098 MS.gene24082:intron 50.0%
TGGGCTATGCTTGCATCTGT+TGG - 6096:2296-2315 MS.gene24082:intron 50.0%
TGGGGCAAAGCAGTTTACAG+AGG + 6096:1690-1709 MS.gene24082:intergenic 50.0%
TTAGCAGAGCTCACAGGACA+AGG + 6096:4155-4174 MS.gene24082:intergenic 50.0%
TTCCAGCTAAGTGAAGGCCT+GGG + 6096:4065-4084 MS.gene24082:intergenic 50.0%
! CGGTCACTACCTCTGTTTTC+TGG + 6096:1912-1931 MS.gene24082:intergenic 50.0%
! CGTTGGTTATTCCAAGCTCC+AGG - 6096:2385-2404 MS.gene24082:CDS 50.0%
!! ATTGAAGCACTGGAGCCTCT+AGG - 6096:4560-4579 MS.gene24082:CDS 50.0%
!! CTACCTCTGTTTTCTGGCCT+TGG + 6096:1906-1925 MS.gene24082:intergenic 50.0%
ACTGCACTCTCAGGGAATCG+GGG + 6096:3569-3588 MS.gene24082:intergenic 55.0%
AGAGGTTGTTTGCTCCTCCC+AGG - 6096:3328-3347 MS.gene24082:intron 55.0%
ATCCCAGGCCTTCACTTAGC+TGG - 6096:4060-4079 MS.gene24082:CDS 55.0%
ATTCAAGGCTCAGGCTGCCA+AGG - 6096:1886-1905 MS.gene24082:CDS 55.0%
CCTGGCTTCCAGCTAAGTGA+AGG + 6096:4071-4090 MS.gene24082:intergenic 55.0%
CCTTCACTTAGCTGGAAGCC+AGG - 6096:4068-4087 MS.gene24082:CDS 55.0%
CTGCAGTTCCACTGGATCCT+TGG + 6096:2134-2153 MS.gene24082:intergenic 55.0%
CTGCCAAGGCCAGAAAACAG+AGG - 6096:1900-1919 MS.gene24082:intron 55.0%
CTTCCAGCTAAGTGAAGGCC+TGG + 6096:4066-4085 MS.gene24082:intergenic 55.0%
GAAATAGGGCCAAGCCAACG+AGG + 6096:2040-2059 MS.gene24082:intergenic 55.0%
GACGCTTGGCAATGATGGCT+TGG - 6096:4696-4715 MS.gene24082:CDS 55.0%
GCTTCATGGCAAGAGCTTGC+TGG - 6096:1740-1759 MS.gene24082:CDS 55.0%
GTTCCACTGGATCCTTGGCA+AGG + 6096:2129-2148 MS.gene24082:intergenic 55.0%
TAACCAACGCGCCACCAAAC+AGG + 6096:2374-2393 MS.gene24082:intergenic 55.0%
TAGGAGGTCGCCTTACACAC+AGG + 6096:3529-3548 MS.gene24082:intergenic 55.0%
TCTCATTGGGGAACTGCCTG+GGG - 6096:2081-2100 MS.gene24082:intron 55.0%
! CTTCACACAAGCGGCACTGA+CGG - 6096:4727-4746 MS.gene24082:CDS 55.0%
!! TGACATTGCTGGCCTTGCCA+AGG - 6096:2114-2133 MS.gene24082:intron 55.0%
!! TTCACACAAGCGGCACTGAC+GGG - 6096:4728-4747 MS.gene24082:CDS 55.0%
AGTGAAGGCCTGGGATGCCA+AGG + 6096:4056-4075 MS.gene24082:intergenic 60.0%
ATGGACAAGGTCGGCCTCGT+TGG - 6096:2023-2042 MS.gene24082:intron 60.0%
CTTAGCTGGAAGCCAGGGAG+TGG - 6096:4074-4093 MS.gene24082:CDS 60.0%
GCAGAGCTCACAGGACAAGG+TGG + 6096:4152-4171 MS.gene24082:intergenic 60.0%
GGGGAACTGCCTGGGGATTA+TGG - 6096:2088-2107 MS.gene24082:intron 60.0%
! TGGCCTTGCCAAGGATCCAG+TGG - 6096:2123-2142 MS.gene24082:intron 60.0%
!! CAAGCGGCACTGACGGGTAA+AGG - 6096:4734-4753 MS.gene24082:CDS 60.0%
!! GAACCTGTTTGGTGGCGCGT+TGG - 6096:2368-2387 MS.gene24082:CDS 60.0%
! CAAGGTCGGCCTCGTTGGCT+TGG - 6096:2028-2047 MS.gene24082:intron 65.0%


Chromosome Type Strat End Strand Name
6096 gene 1602 4841 1602 ID=MS.gene24082
6096 mRNA 1602 4841 1602 ID=MS.gene24082.t1;Parent=MS.gene24082
6096 exon 4522 4841 4522 ID=MS.gene24082.t1.exon1;Parent=MS.gene24082.t1
6096 CDS 4522 4841 4522 ID=cds.MS.gene24082.t1;Parent=MS.gene24082.t1
6096 exon 4279 4428 4279 ID=MS.gene24082.t1.exon2;Parent=MS.gene24082.t1
6096 CDS 4279 4428 4279 ID=cds.MS.gene24082.t1;Parent=MS.gene24082.t1
6096 exon 4037 4169 4037 ID=MS.gene24082.t1.exon3;Parent=MS.gene24082.t1
6096 CDS 4037 4169 4037 ID=cds.MS.gene24082.t1;Parent=MS.gene24082.t1
6096 exon 2315 2407 2315 ID=MS.gene24082.t1.exon4;Parent=MS.gene24082.t1
6096 CDS 2315 2407 2315 ID=cds.MS.gene24082.t1;Parent=MS.gene24082.t1
6096 exon 1602 1913 1602 ID=MS.gene24082.t1.exon5;Parent=MS.gene24082.t1
6096 CDS 1602 1913 1602 ID=cds.MS.gene24082.t1;Parent=MS.gene24082.t1
Gene Sequence

>MS.gene24082

ATGGTGTGGCTTCAACTTCAATCAGTGACGTGTCCTTCCTCTTCTTCATCTTGTTTCGTTAGTGGCTCTAGTCGCTGCTCCCTCTCCTCTGTAAACTGCTTTGCCCCAAAACCCAGAACACAACATCTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCTGTCAAAGCTATAGCTAACAGTCCATTAGGGGAGTCACTTCAAAGAAAAATGGAAGAGACTAAGCAACTTGCTGTACAAAACTCCTCTAAATTCAAGGCTCAGGCTGCCAAGGCCAGAAAACAGAGGTAGTGACCGATTTCAATTATTTTTATTCTCATTGCTGCTGCTGCTGCATCAATGAATTGTGCTCATTCCTATCATTCCTTAAACATTTTCAGCTTTTGGTATGGACAAGGTCGGCCTCGTTGGCTTGGCCCTATTTCGTATGATGGCTACCCATCATATCTCATTGGGGAACTGCCTGGGGATTATGGCTTTGACATTGCTGGCCTTGCCAAGGATCCAGTGGAACTGCAGAAATATTTCAAGTACCACCCAAGCCATTATGGTTATGTTATGTTATTATTATTGCTTCTTGAATTTTTCATTTAAATAGTTAAATAGTTAACTTGTCCTTTCATTTAATTTACCATTAAGCTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTCTCATTCCTGAGTTATTAGACCTATTGGGAGTCTTTCACTTTGTTGAACCTGTTTGGTGGCGCGTTGGTTATTCCAAGCTCCAGGTTAGCATGTTCTATCTCTCTTATCTATTTGTTCACCTTTATCTTACACAAGTTTGTTCAATTAATAATATAATTACAGTCCATTTTCCACTAATTAGAAAGGGAAAATTGTGTCTTGTTTAACAATTTCAGAAAGCTACAAATGCTCTATGACATTGCTAGTTTGCAAATGAGTATTCCCATGCTGATCCTGAAAAGTGTCATGGGAGTTCAAAAATTAATTGTAGTTTTTCACTTCTTGTGTCTTGTAGTAGTTTGTTTGATCATATTGTTGTTTTTATCTCTCATTTCATCGACAATAGGGTAGCATTCATTGTAAAAGTTTACCGGCATGAATAAGGAATTTTTTTAATGATTATGGGAGATGCAAATATAACATGGCAACCTTTCTTTCTCATTACAAGATGATCTCATGTTCTTAAGAAAAAGAAAATCTATACGCTAAGAACATAGATGCCAAATATCATCGGGGAAATATGTCTTTGTCCGCCTACCACTGCATAACTAACTGATAAGAGTTTATAAAGAGAATTGATAGGCTCATAAGGTGAGGAGTGCCTCTCTTTATAAACTCATATCAAGAGTCCTATATTTCCAATGTGGGACTTGGGTTTTTTCCAATATTTGTCAACGGTACTACGACCATTTGAAGAAATTAAGAAAATAGTAATCAGTTTTGATTATCAATTGTGTGCTTTGTTATGGGCAGCATTTTGAACACAACATCTTAGCAAACATAATAAGTTTTCAAACCTGTTATATGGTGGGGAAAAAGGGTCAAAGTGTCTTTGCTAACGATATTCAAAAGTTCGACAACACTACATAGAATTGGCCACTCTTAAATAATATTACCGTGATATGCTTTCGTATGTTTCTAAGAAGCTATTCAGTTCACTTCTGGTCCCACTCTAAGTCTTATAAAGAGGTTGTTTGCTCCTCCCAGGTATGTGTACTGTTCACCAATACTGTTATCCTGTCGAAATTGTCACTAACTTGAGTGTCAAAGTGTATCTTATCGAAATTCTCACAAACTTGAGTATCAAAGTGTATCTTATCGAAATTCTCACTAACTTGAATTTAAAGTGTATTTTGGTATTCACCCTTGTGGACATCTGTATTCCTGTGTGTAAGGCGACCTCCTAACCAACAGATGTTCAAACCCCGATTCCCTGAGAGTGCAGTTTTCTGATTGACTTTGATGCTTGTATCAAGCTTAAGCTACAAGGGGAGTGCCACAATATTAGAATTATTTGGTTATTACTCTTATTGTTAAATGTTAAGGGGCTAATGGACTTGGGCTTATAGTACTAGCACTTAACCAAGTTATTAGATAAATAGGGATGCTAAAGGTTAGTGTTTTGTTTCACATTACATCTTTCATTATACTTTCAGCATACTGAACCGTCTTTCTCTCTTGTCCTTTCCCTTATCCCTATACCAATAATTCTTTGGCACTTTCTTTTCCATTATTGCACTTTATTAATTGAAACTAGTTGATAAATTTTTACCTGCATGAGAATAAATTTAGCTCAGGCTGATGTTGTATACTTTTTTACGAAGCAAATAAACTGGTGAGTTGTAATAATGCAATTGACACTTATTACTTATGAGTCTTCCAATTTCTGACAGGGGGATACTCTAGATTACCTTGGCATCCCAGGCCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTAATGCTTGTATCCATTATCCACCTTGTCCTGTGAGCTCTGCTAATATTATTTATATCTTGTGACACTTGTCTTCCAGTACTCTTTGAGCCCATATGATGTTAGTGATGATGTGGCGTAGCACTACTAATTATTAGATTTTTAACTTAGTGGTATTGGATGTATTGGGACCTTTCGATTCTACAAATCGAACATTTCTCATGGCTTTTAATCCTTCGTAGGTGTTCTCTTGAAATTAAAGAAGTTAATTTGCTTTCATAACTCATTTGTTTGGGCTAAAATAAAAAGTTTCAGTAGTTGGAGCTGCTTAACCATAAATTTGTTTCTTTTGGACAGTCATTTGCGTCTGCAGATGGATTAGCTACTGTTACTACTAATTTGGGATTCTTATCATAAAACAGGTTGGACCAGAATACGCCAGATATTGTGGGATTGAAGCACTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCATTGTTTGATCCCTTAAATCTGTCCAAAGATCCTGAAGCTTTTGAAGAGCTGAAAGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGTTTCTTCACACAAGCGGCACTGACGGGTAAAGGTCCTGTACAAAACATTGTGGATCATATCTCCGATCCTTTCCACAACAACTTGCTTGGGTCACTCAATTCAATGAAATTACACTAG

Protein sequence

>MS.gene24082.t1

MVWLQLQSVTCPSSSSSCFVSGSSRCSLSSVNCFAPKPRTQHLICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEETKQLAVQNSSKFKAQAAKARKQSFWYGQGRPRWLGPISYDGYPSYLIGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHISDPFHNNLLGSLNSMKLH