AlfalfaGEDB | MS.gene53510

M. sativa cultivar XinJiangDaYe / MS.gene53510

KEGG: K07052
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031300 GO:0031301 GO:0043170 GO:0044238 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0110165 GO:0140096 GO:1901564
PFAM: PF02517.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53510.t1	XP_003630031.1	93.5	276	14	1	1	276	1	272	1.40E-136	495.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53510.t1	G7L9N3	93.5	276	14	1	1	276	1	272	9.8e-137	495.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene53510	0.827402	1.60E-54	-1.69E-46
MS.gene049171	MS.gene53510	0.852785	3.68E-61	-1.69E-46
MS.gene049217	MS.gene53510	0.809082	2.26E-50	-1.69E-46
MS.gene049222	MS.gene53510	0.882465	1.02E-70	-1.69E-46
MS.gene049232	MS.gene53510	0.818783	1.64E-52	-1.69E-46
MS.gene049285	MS.gene53510	0.847299	1.26E-59	-1.69E-46
MS.gene049320	MS.gene53510	0.829879	4.02E-55	-1.69E-46
MS.gene049609	MS.gene53510	0.855619	5.59E-62	-1.69E-46
MS.gene049627	MS.gene53510	0.828814	7.29E-55	-1.69E-46
MS.gene049633	MS.gene53510	0.834067	3.71E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53510.t1	MTR_8g089550	92.806	278	16	1	1	278	1	274	0.0	523
MS.gene53510.t1	MTR_8g089550	91.099	191	13	1	1	191	1	187	8.25e-123	350

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53510.t1	AT3G26085	61.826	241	85	2	45	278	29	269	1.29e-101	298
MS.gene53510.t1	AT3G26085	61.826	241	85	2	45	278	50	290	4.50e-101	297
MS.gene53510.t1	AT3G26085	61.826	241	85	2	45	278	70	310	7.98e-101	297
MS.gene53510.t1	AT3G26085	61.826	241	85	2	45	278	79	319	9.19e-101	297

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Find 54 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGGCAGAACTGCGCCG+CGG	0.783792	4.2:+12107284	None:intergenic
AATAGAAGGATTGCCGGTCT+TGG	0.411237	4.2:-12110041	MS.gene53510:CDS
AATGAACTGGACGAGTATTG+CGG	0.660794	4.2:-12107257	MS.gene53510:CDS
AATTCCAGGCAAAACTGCAA+CGG	0.649711	4.2:+12107416	None:intergenic
ACAGCACTCCTGGAAGGAAT+AGG	0.375154	4.2:+12110430	None:intergenic
ACCTTTGTTGGTCTTGTATA+CGG	0.257492	4.2:-12107029	MS.gene53510:CDS
ACTGTGAGGGAGAGTGATGA+AGG	0.564456	4.2:+12110921	None:intergenic
AGCTTGAAGCACAGCACTCC+TGG	0.355918	4.2:+12110420	None:intergenic
AGTGTGCGAGAGATAAAGCA+TGG	0.665545	4.2:+12110999	None:intergenic
ATGCTAACCCTATTCCTTCC+AGG	0.372799	4.2:-12110438	MS.gene53510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAACCAAAACTAACTGA+TGG	+	chr4.2:12109526-12109545	None:intergenic	30.0%
AAAGCTTTCGTTACCATTAA+CGG	-	chr4.2:12109919-12109938	MS.gene53510:intron	30.0%
AAATGCAACAAAGTTGGAAA+CGG	+	chr4.2:12107596-12107615	None:intergenic	30.0%
AACTAAGCCTAACTAACTTT+GGG	+	chr4.2:12108392-12108411	None:intergenic	30.0%
ACAATTACCTTAGGTTTAAG+AGG	+	chr4.2:12109349-12109368	None:intergenic	30.0%
ATCCAAACTATCTTGTATTC+TGG	-	chr4.2:12108297-12108316	MS.gene53510:intron	30.0%
ATGGAAAAATGCAACAAAGT+TGG	+	chr4.2:12107602-12107621	None:intergenic	30.0%
ATTTAGTAACTCGTAACTGT+TGG	+	chr4.2:12110180-12110199	None:intergenic	30.0%
CTACTCATAACAATTACCTT+AGG	+	chr4.2:12109358-12109377	None:intergenic	30.0%
GACTCCTATTTCATCTATTA+AGG	-	chr4.2:12109079-12109098	MS.gene53510:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	12106923	12111025	12106923	ID=MS.gene53510
chr4.2	mRNA	12106923	12111025	12106923	ID=MS.gene53510.t1;Parent=MS.gene53510
chr4.2	exon	12110923	12111025	12110923	ID=MS.gene53510.t1.exon1;Parent=MS.gene53510.t1
chr4.2	CDS	12110923	12111025	12110923	ID=cds.MS.gene53510.t1;Parent=MS.gene53510.t1
chr4.2	exon	12110369	12110595	12110369	ID=MS.gene53510.t1.exon2;Parent=MS.gene53510.t1
chr4.2	CDS	12110369	12110595	12110369	ID=cds.MS.gene53510.t1;Parent=MS.gene53510.t1
chr4.2	exon	12110020	12110080	12110020	ID=MS.gene53510.t1.exon3;Parent=MS.gene53510.t1
chr4.2	CDS	12110020	12110080	12110020	ID=cds.MS.gene53510.t1;Parent=MS.gene53510.t1
chr4.2	exon	12109134	12109258	12109134	ID=MS.gene53510.t1.exon4;Parent=MS.gene53510.t1
chr4.2	CDS	12109134	12109258	12109134	ID=cds.MS.gene53510.t1;Parent=MS.gene53510.t1
chr4.2	exon	12107410	12107472	12107410	ID=MS.gene53510.t1.exon5;Parent=MS.gene53510.t1
chr4.2	CDS	12107410	12107472	12107410	ID=cds.MS.gene53510.t1;Parent=MS.gene53510.t1
chr4.2	exon	12107193	12107317	12107193	ID=MS.gene53510.t1.exon6;Parent=MS.gene53510.t1
chr4.2	CDS	12107193	12107317	12107193	ID=cds.MS.gene53510.t1;Parent=MS.gene53510.t1
chr4.2	exon	12106923	12107055	12106923	ID=MS.gene53510.t1.exon7;Parent=MS.gene53510.t1
chr4.2	CDS	12106923	12107055	12106923	ID=cds.MS.gene53510.t1;Parent=MS.gene53510.t1

Gene Sequence

>MS.gene53510

ATGGCCATGCTTTATCTCTCGCACACTCTCAATTCCTGGAGTTGCTGTAGTACTATCGCTCACACAGCATACTCTACTGCTACCTTCATCACTCTCCCTCACAGTTAGTTAATCACACTCTAAACCTTCTTTAATTTCTATTTTTATTAACCCCGTGTCATGTAATTCAACTTAATTAATTGCTGATAGCATAATTACTTATGTATAAGCTATCTCTATAACAAAAAATGAAATTATTAACTCAAGTTGTGTTCATATAAACTTGTTTTTATAAGTTATTATCAAAAGTTTATGGGAATAAGCTAAAATCATAAGCTGTTACTATAAGCTCTCACAAGTTGTTCTTCTCACAGTAGATAAGATAAGCTCAAATAGTCAATTCTAACAAGCCTAGTGAAATTGATTTTTTTTTTTTTTTTTTTTTTTATAGGGAGTAGATATAACACATGTTCTTTTGCCAAGAAATCCAAGAGGGAAGGACCTGATACATCTGTAGATCTCTCAAACGACAAATCTGTTCAAAATGACAACTTATTGGACACTTCTCTTAATCCACTTGTTGAGAATGCTAACCCTATTCCTTCCAGGAGTGCTGTGCTTCAAGCTTGCATACTGACTTCTGGTCTCATTGCTGCTTTCGGGACAGTGATTCGCCAGGTTCTCCTTCAATCCGTTTCCAACTTTGTTGCATTTTTCCATTGTCTATTTTAGCGATATAACATGCTTGCACAATAAACATACATTTCATTTGGCCATCATAGAAACTATTTCAGTATATTAGCAAGGAGAGTTAGTTGAATTCAGGCTGAAAGTTCTATTATTAACAACCGATTTCTTAATGCCAGCCAAAGCTTGGTTTTACACAAGATTGTTAGCCGTGGAAATTTGCATACACAAGATTGTTTTTTTTTTTTTTTTAATTAATCTTGTTTTTACAACTTGCAGGTGTCTCATGTTGCGTCAATAGAAGGATTGCCGGTCTTGGACTGCTCTACAGAAGTATCATGTATTACACTTTTATTTACTTCTTCCTGCTTTTCTGTTTTGCAAGTTTCTGCTAATTCTCTTCGATTCAAATTGATAGAAAGATAACATGAATCAAAATAAAATAAACATTGTCTCAAACATGTGGTATTACCATAAAGCAATACTGTTGTGGGTGAAATACTGAAATGCACATGACAATTTTGGATTTTCAAGTGGTATCACAGGTGAAAATTATTGAACATGAAGGTTGATAATTTTGTAAATTTCCAACCATAAACTTAAAAGTACAACATTTCCTCTGAAATGTTCTTAATAATTGGTGTGAGGCTTCACATGCTATGATATATTTATTGTGGGTTATGACTTTATCATGAACATTGACATGTAATCCAAACTATCTTGTATTCTGGTGGTGGGACTTTAAAGATAACCTGAATTGACTTCTAATGTATTTGTGTAACCACACAGTCACTATTGTTCCCAAAGTTAGTTAGGCTTAGTTCAGTTAGGAGTTAACCAATTTTGTTATAGCTTCTGTAGTTACATATGTATAAATACTTACTTGTACACGTCTCAATTTACAATGACAAATACAAAACTGATTCAGTTACACTTTCTTCTCTGTCTCTCTGAATCTAGAAACTTCTCTGAAGCTAACCAATGGTGATTACAGAATTATAACAATTATAACTGAGCTGATTTCTTGTGGTAAATGCGTTTAAAGTATTTGTTGTGATGAGTGAAGTATCTTAAGACTTTTTTTTCTCCTCTTATATGCAGTTGGTTTTGAAATGTGGCATCTTGAGATGATTACAGGAATTGTAGTATTAATATCATCAAGTCGCTCTTTGCTATTGAAGACTTGGCCGGATTTTGCTGAGTCTAGTGAAGCAGCCAATAGACAGGTAACTTAGATGGAAACCATAAAATCAACAGTGAAATATTTATATTATTGAATGAAAAAGATGAGCTTAGAGCTCTACAATGGTGGGATAGTAGAAAATGAAAGAGATAAACCAGAGTGCGAACACTCCTACCAGAGCATAATGCTCTTAACCAGAGAGAAACTCTCCTAACAAACTCTAATAATAATTCTCCACGAGTTACACACTACCCTTCCCTCTCTTTTATAACAGAAAAGTTCCCTAAAATCATGAAATATTCTAACTGACTCCTATTTCATCTATTAAGGTTAGTTATTGGGCTTAGGCCAAAAACCAGTGTTCTATCATAAGTGAAGGAACTGGATTCTCTAGTCTACAATCAAAATGTCACACTGTCATTGCAGTTGGACAATAAGCACTGTTGAATGAAGATTGGAAGACTCACATTTTGAGTTAGCCTTTTAAATCTGAAACTCACATGGTGGAATAAACTTCCTGCCAAGTAGTAGAATCTGAAAAGGAAGCATTGAAGGTGAAGTGGCATGCACAGATCCTCTTAAACCTAAGGTAATTGTTATGAGTAGCAAACTGTCAGATAAACGTCACCACGATTATCAATTCTCACGCAATACCTCACTTCCTTTTATTTCTTATTCATTGGTCTCGCTCGCACGAACAGATGAATCCTGCTCCCAGTTTTCTCTGTTAACTGTAACGAAAGCTTCCGAGCCATCAGTTAGTTTTGGTTCTTTTCTTGTGAAGCATTTTAGCTATGAATTAGTAAAACTGATGCCTTTGCTATGGTGTCCGAGTAAGTGTTTTATCTTTGAATTAGTTAGTATTTGCAAGCTTCGGTTGACTGTCAAACATCTCTCTCTCCTCCGTCAAACACTTCCTATTTCACGAGAATTCATAGAAAATCGAATCACGGAGAAGACTCTGAAATCAGTCATGTCGTGTAACAAGGAACCAACACTGTAGTCACTCATCAATTCAAAACAAAAGGTGTGAATATTAATGAACACATTGCACAAGACATTAAAATGACGGTTTCACTCAGTCTGCTGCTCCCGAGATCCTGTCTCGGTGACCCCAAGAAGAGAACCAAAACCACCCAATGGCTTGAAAGCTTTCGTTACCATTAACGGAAAACTGGGAGCAGGATTCATGTGTTCGCAAGAGTGAGACAAGTGCATAAGAGAAGGAAGCAGGTTTCAGATTGTGCGTGAGAATCAATAATCGTGGTGATTTTTATTTGAGAGAGTTTGCACTCCTAACAATTACCTTTGGAGGCTTAAGAGGATGCATGCACGTTATAAGTCGTGGCTACCATAAAGTAGCACTTATTGAATTTAAAATACGAATGAATAGTTTGGTTTTCACCCAACAGTTACGAGTTACTAAATGCATGGTATTCTGACTGCAAACAATGATAGTCCATAATTGAATCAGTTCATAGCTCTAGAAAATTCCTTTAAGATAGTGTAAGCTTGGCATTGTTATTAGCGGATTGCCATTTAAAATTTGAATATTATATAGTAGATGGTATTTAGTTAGTTAAGTAACTGTTAGTGCAACGAAACTAGAAATAATTCCGGCCAGCAATAACTTTTCTCACAACTCAGTTGCTTTAGTCCATTTTTGTTTTCTAAACTCTGAAAATATTTTGTTTTCCAAATCAGGTCCTTAGCTCTCTCCAACCTTTGGATTATATTGCCGTTGCAGTTTTGCCTGGAATTAGTGAGGTTAAAACAGATTTACTCTTCTTGGCTTATTTTACCGTTCTTATTTATTTTTCATCATGACTTAAATCACATCCTACCATCTTGAATTCCAGGAACTACTTTTCCGCGGCGCAGTTCTGCCACTTTTGGGAATGAACTGGACGAGTATTGCGGTAGCTGCTTTAATCTTTGGTGTTTTGCACATAGGCAATGGTCGAAACTATTCCTTTGCCATCTGGTGCATGTCCCTAATTTCTGAAAATTGGATTGTTGATTTAAATTCCTTTTATCGTATCCTCTCCATGGCACATCCATTTTTCATTGTTGTGTTGTTAACCTGATCTAATTAGAATCATATTATTGTTTATGTTTCAGGGCAACCTTTGTTGGTCTTGTATACGGATATGCTACAGTTTTATCCTCTAGCCTTGCAGTTCCCATGGCTTCTCATGCAGTGAACAACCTGATAGGAGGGCTTTTATGGCGGTACACATCAAAGCAGAAATGA

Protein sequence

>MS.gene53510.t1

MAMLYLSHTLNSWSCCSTIAHTAYSTATFITLPHRSRYNTCSFAKKSKREGPDTSVDLSNDKSVQNDNLLDTSLNPLVENANPIPSRSAVLQACILTSGLIAAFGTVIRQVSHVASIEGLPVLDCSTEVSFGFEMWHLEMITGIVVLISSSRSLLLKTWPDFAESSEAANRQVLSSLQPLDYIAVAVLPGISEELLFRGAVLPLLGMNWTSIAVAALIFGVLHIGNGRNYSFAIWATFVGLVYGYATVLSSSLAVPMASHAVNNLIGGLLWRYTSKQK