AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015985.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015985.01.T01 MTR_3g081060 78.723 235 23 4 1 208 1 235 6.67e-121 352
MsG0380015985.01.T01 MTR_3g081060 93.750 64 4 0 233 296 348 411 4.97e-34 128
MsG0380015985.01.T01 MTR_7g081050 65.939 229 51 5 6 208 4 231 8.69e-97 291
MsG0380015985.01.T01 MTR_7g081050 73.016 63 16 1 234 296 344 405 3.40e-21 93.2
MsG0380015985.01.T01 MTR_3g081040 68.372 215 43 4 19 208 17 231 8.47e-96 288
MsG0380015985.01.T01 MTR_3g081040 82.540 63 10 1 234 296 345 406 5.60e-26 106
MsG0380015985.01.T01 MTR_3g080980 60.870 230 64 4 6 209 3 232 3.68e-88 269
MsG0380015985.01.T01 MTR_3g080980 69.355 62 18 1 235 296 345 405 3.44e-20 90.1
MsG0380015985.01.T01 MTR_7g081060 60.177 226 65 4 8 208 6 231 1.19e-86 265
MsG0380015985.01.T01 MTR_7g081060 53.333 60 28 0 235 294 344 403 4.53e-11 63.5
MsG0380015985.01.T01 MTR_6g033965 61.261 222 62 3 8 205 6 227 2.72e-86 264
MsG0380015985.01.T01 MTR_6g033965 53.226 62 29 0 235 296 343 404 8.75e-11 62.4
MsG0380015985.01.T01 MTR_6g033975 60.360 222 64 3 8 205 6 227 1.07e-83 257
MsG0380015985.01.T01 MTR_7g029365 44.643 224 96 5 8 204 11 233 2.74e-50 169
MsG0380015985.01.T01 MTR_5g084950 46.354 192 77 4 41 209 40 228 5.87e-50 170
MsG0380015985.01.T01 MTR_5g084950 53.226 62 28 1 233 294 340 400 7.42e-14 71.6
MsG0380015985.01.T01 MTR_7g029365 44.643 224 96 5 8 204 11 233 1.44e-49 169
MsG0380015985.01.T01 MTR_7g029365 53.226 62 28 1 233 294 350 410 3.34e-12 66.6
MsG0380015985.01.T01 MTR_0595s0010 39.914 233 107 5 3 205 6 235 7.56e-47 160
MsG0380015985.01.T01 MTR_6g023740 38.793 232 108 5 7 207 9 237 4.04e-46 160
MsG0380015985.01.T01 MTR_6g023740 41.176 85 45 1 214 293 327 411 2.10e-12 67.4
MsG0380015985.01.T01 MTR_6g023715 40.394 203 94 3 35 210 38 240 4.44e-43 152
MsG0380015985.01.T01 MTR_6g023715 45.455 66 36 0 228 293 327 392 8.59e-12 65.5
MsG0380015985.01.T01 MTR_6g023750 43.182 176 73 3 59 207 5 180 2.00e-39 141
MsG0380015985.01.T01 MTR_6g023750 42.353 85 44 1 214 293 270 354 7.58e-13 68.6
MsG0380015985.01.T01 MTR_5g006650 43.452 168 68 5 65 209 44 207 3.85e-32 119
MsG0380015985.01.T01 MTR_1g107330 36.813 182 85 4 43 194 35 216 2.13e-31 119
MsG0380015985.01.T01 MTR_1g107330 36.813 182 85 4 43 194 35 216 4.40e-31 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015985.01.T01 AT5G14180 37.407 270 132 6 2 238 5 270 4.65e-45 155
MsG0380015985.01.T01 AT5G14180 37.407 270 132 6 2 238 5 270 8.13e-45 154
MsG0380015985.01.T01 AT5G14180 37.407 270 132 6 2 238 5 270 4.02e-44 155
MsG0380015985.01.T01 AT2G15230 39.560 182 79 4 41 196 30 206 2.32e-36 134
MsG0380015985.01.T01 AT5G14180 35.758 165 82 3 96 238 8 170 1.74e-21 92.8
MsG0380015985.01.T01 AT5G14180 36.025 161 79 3 100 238 3 161 4.83e-21 91.3

Find 50 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTATTGAGCAGGGATAT+TGG 0.304995 3:-77531567 MsG0380015985.01.T01:intron
ATGAATCCCAACGATTCTTC+TGG 0.332777 3:+77532404 None:intergenic
GGATATTGGAATAAAACTTC+TGG 0.335303 3:-77531553 MsG0380015985.01.T01:CDS
TCTAAAGTACCTGTGAATAA+TGG 0.365904 3:+77531483 None:intergenic
AGGATCCCGGTAGGGAGGTC+TGG 0.391845 3:-77532729 MsG0380015985.01.T01:CDS
AGACCATGTTGGATTAATAT+AGG 0.422190 3:+77532687 None:intergenic
TTTGTATAGGCTTATTGGAT+TGG 0.423418 3:-77532173 MsG0380015985.01.T01:intron
ATTTGAGTCATATGAGCAAT+TGG 0.424879 3:+77531893 None:intergenic
TCCCTACCGGGATCCTCTGC+AGG 0.427098 3:+77532736 None:intergenic
CAGTCTTATCTCAATAGTCT+TGG 0.446672 3:-77533087 MsG0380015985.01.T01:CDS
TTCTTGCCAGACCTCCCTAC+CGG 0.449901 3:+77532723 None:intergenic
TCAGCTATCAATGATTATGA+TGG 0.457813 3:-77533011 MsG0380015985.01.T01:CDS
CAACCGTGTGGTATTGTTCA+AGG 0.466765 3:-77530595 MsG0380015985.01.T01:CDS
CGCTTATTGCCATTATTCAC+AGG 0.474257 3:-77531492 MsG0380015985.01.T01:intron
TAGGCTTATTGGATTGGTCA+TGG 0.490235 3:-77532167 MsG0380015985.01.T01:CDS
TAAGCGGTTTGTGCAGTTGA+GGG 0.507971 3:+77531509 None:intergenic
TAGCATCATGGTCATTATTG+AGG 0.509250 3:+77530619 None:intergenic
AATTCTCCAGAAGAATCGTT+GGG 0.517452 3:-77532410 MsG0380015985.01.T01:CDS
CAATTCTCCAGAAGAATCGT+TGG 0.526154 3:-77532411 MsG0380015985.01.T01:CDS
TACACATATTGTGCTGAAGC+AGG 0.528094 3:+77532120 None:intergenic
GGTTTGTGCAGTTGAGGGAT+AGG 0.533808 3:+77531514 None:intergenic
TTTGATGTGTGGCTTATCAA+TGG 0.534449 3:-77532365 MsG0380015985.01.T01:intron
TGGTCATGGGATGAATTAGC+TGG 0.535170 3:-77532153 MsG0380015985.01.T01:CDS
TTATACGTGTGAAGAACATA+AGG 0.540544 3:-77532958 MsG0380015985.01.T01:intron
AGGCTTATTGGATTGGTCAT+GGG 0.541662 3:-77532166 MsG0380015985.01.T01:CDS
CTTGAGCCTGCAGAGGATCC+CGG 0.547280 3:-77532742 MsG0380015985.01.T01:CDS
ATAAGCGGTTTGTGCAGTTG+AGG 0.553728 3:+77531508 None:intergenic
TCTTGCCAGACCTCCCTACC+GGG 0.556268 3:+77532724 None:intergenic
GCTTCTGAATGTATTGAGAT+CGG 0.565413 3:-77531930 MsG0380015985.01.T01:CDS
TATTTCAGGATGCTGCCGTA+TGG 0.566764 3:-77532439 MsG0380015985.01.T01:intron
ACTCAGGTTACAACAGATGA+TGG 0.570897 3:-77532771 MsG0380015985.01.T01:intron
GCCTGCAGAGGATCCCGGTA+GGG 0.576569 3:-77532737 MsG0380015985.01.T01:CDS
ATCTGATGTACAAGATGTGA+AGG 0.579082 3:-77530655 MsG0380015985.01.T01:CDS
CAGATATTGGATTTGATGTG+TGG 0.580726 3:-77532376 MsG0380015985.01.T01:CDS
TGCAGAGGATCCCGGTAGGG+AGG 0.585018 3:-77532734 MsG0380015985.01.T01:CDS
CCACACGGTTGCTAGCATCA+TGG 0.601075 3:+77530607 None:intergenic
CCATGTTGGATTAATATAGG+AGG 0.616127 3:+77532690 None:intergenic
TGTGCAGTTGAGGGATAGGA+CGG 0.620624 3:+77531518 None:intergenic
ATTGGAATAAAACTTCTGGA+TGG 0.625552 3:-77531549 MsG0380015985.01.T01:CDS
CCTCCTATATTAATCCAACA+TGG 0.625853 3:-77532690 MsG0380015985.01.T01:CDS
AGCCTGCAGAGGATCCCGGT+AGG 0.629406 3:-77532738 MsG0380015985.01.T01:CDS
TGGAGAATTGAACAACCATA+CGG 0.639873 3:+77532424 None:intergenic
GCTACATCTTGAGCCTGCAG+AGG 0.650733 3:-77532749 MsG0380015985.01.T01:CDS
CTGTGAATAATGGCAATAAG+CGG 0.654347 3:+77531493 None:intergenic
AGGGAGGTCTGGCAAGAAAG+CGG 0.654413 3:-77532718 MsG0380015985.01.T01:CDS
TTACACAAAAGAGACCATGT+TGG 0.663756 3:+77532676 None:intergenic
CATCCTTGAACAATACCACA+CGG 0.673124 3:+77530592 None:intergenic
CAATATGTGTACAACCACAC+TGG 0.676176 3:-77532108 MsG0380015985.01.T01:CDS
AACACTATAGTAGAGAAACA+AGG 0.740164 3:-77532981 MsG0380015985.01.T01:CDS
CCATGATGCTAGCAACCGTG+TGG 0.780724 3:-77530607 MsG0380015985.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATATAAAAATGACA+TGG + Chr3:77532627-77532646 None:intergenic 10.0%
!! AAACATATTAACAAATAGTA+AGG + Chr3:77531968-77531987 None:intergenic 15.0%
!! AAATTAATAATACAAAAGTC+AGG + Chr3:77532787-77532806 None:intergenic 15.0%
!! TTAAAATTAATTTCTCTACA+TGG - Chr3:77532665-77532684 MsG0380015985.01.T01:intron 15.0%
!!! ACAAATTGATATAATTTTTC+AGG - Chr3:77531629-77531648 MsG0380015985.01.T01:intron 15.0%
!!! ATTTTTATGCATTTATGAAT+AGG - Chr3:77532740-77532759 MsG0380015985.01.T01:CDS 15.0%
!!! CAAATTGATATAATTTTTCA+GGG - Chr3:77531630-77531649 MsG0380015985.01.T01:intron 15.0%
!!! TTTTCATAATTGTATTCAAT+TGG + Chr3:77531854-77531873 None:intergenic 15.0%
!! ACACTAACAAAAATGAAAAT+AGG + Chr3:77531094-77531113 None:intergenic 20.0%
!! ACATCAATAATTGTTGTAAT+TGG + Chr3:77532213-77532232 None:intergenic 20.0%
!! ATCATACTTAACAAAACTTT+AGG + Chr3:77532581-77532600 None:intergenic 20.0%
!! GATCAAATTATATTTAGTCA+TGG + Chr3:77532402-77532421 None:intergenic 20.0%
!! TAACAAATAGTAAGGAAATA+GGG + Chr3:77531960-77531979 None:intergenic 20.0%
!! TAATGTAACAGGATATATAT+TGG - Chr3:77531889-77531908 MsG0380015985.01.T01:CDS 20.0%
!! TATGAAAAAAGTGAACAATT+AGG - Chr3:77532552-77532571 MsG0380015985.01.T01:intron 20.0%
!! TCAATATTGTATATGTAAAG+CGG - Chr3:77530990-77531009 MsG0380015985.01.T01:intron 20.0%
!! TTAACAAATAGTAAGGAAAT+AGG + Chr3:77531961-77531980 None:intergenic 20.0%
!! TTCCTTACCTTAAAATTTAT+AGG - Chr3:77532242-77532261 MsG0380015985.01.T01:intron 20.0%
!! TTTAGAAAAAAATGCTTCTT+TGG + Chr3:77532372-77532391 None:intergenic 20.0%
!!! ATTTGGACCTATAAATTTTA+AGG + Chr3:77532252-77532271 None:intergenic 20.0%
!!! TGTTTTATTCCATTTTGTAT+AGG - Chr3:77531433-77531452 MsG0380015985.01.T01:intron 20.0%
! AATTCTAATTTCTATTGAGC+AGG - Chr3:77532044-77532063 MsG0380015985.01.T01:intron 25.0%
! AATTGAAGTGGCATTAATAA+TGG + Chr3:77530789-77530808 None:intergenic 25.0%
! ACATATGTTACAATTTCGAA+TGG + Chr3:77530720-77530739 None:intergenic 25.0%
! ATAAGAATTAACCATGTCAT+TGG + Chr3:77531320-77531339 None:intergenic 25.0%
! ATATGTGATATCAATTGAAG+TGG + Chr3:77530801-77530820 None:intergenic 25.0%
! ATCCTGTTACATTAGAAAAA+AGG + Chr3:77531883-77531902 None:intergenic 25.0%
! ATTCTAATTTCTATTGAGCA+GGG - Chr3:77532045-77532064 MsG0380015985.01.T01:intron 25.0%
! TCCTGTTACATTAGAAAAAA+GGG + Chr3:77531882-77531901 None:intergenic 25.0%
! TGATTCCTATGATTTATTTC+AGG - Chr3:77531166-77531185 MsG0380015985.01.T01:intron 25.0%
!! ATTTGTTACATACACAAACA+TGG + Chr3:77531615-77531634 None:intergenic 25.0%
!! TAACAGGATATATATTGGTT+AGG - Chr3:77531894-77531913 MsG0380015985.01.T01:CDS 25.0%
!! TAGACTTACTTTGAGAAAAA+TGG + Chr3:77532349-77532368 None:intergenic 25.0%
!!! ATTTATTTTTGTGTTGACTC+AGG - Chr3:77530832-77530851 MsG0380015985.01.T01:intron 25.0%
!!! ATTTTGGTTATGTCATAAGT+TGG + Chr3:77532897-77532916 None:intergenic 25.0%
!!! GACCTATAAATTTTAAGGTA+AGG + Chr3:77532247-77532266 None:intergenic 25.0%
!!! TGCACATATTGATTTTATAG+CGG - Chr3:77533054-77533073 MsG0380015985.01.T01:CDS 25.0%
AACACTATAGTAGAGAAACA+AGG - Chr3:77530638-77530657 MsG0380015985.01.T01:CDS 30.0%
AGACCATGTTGGATTAATAT+AGG + Chr3:77530935-77530954 None:intergenic 30.0%
AGCATCCTGAAATAAATCAT+AGG + Chr3:77531174-77531193 None:intergenic 30.0%
ATATACTACACTATGGACAA+AGG - Chr3:77532865-77532884 MsG0380015985.01.T01:intron 30.0%
ATCAAGTTCTTTGTTGATGT+TGG + Chr3:77532326-77532345 None:intergenic 30.0%
ATGTTTGAGTGCAAAAGAAA+AGG - Chr3:77531982-77532001 MsG0380015985.01.T01:intron 30.0%
ATTGGAATAAAACTTCTGGA+TGG - Chr3:77532070-77532089 MsG0380015985.01.T01:intron 30.0%
ATTTGAGTCATATGAGCAAT+TGG + Chr3:77531729-77531748 None:intergenic 30.0%
GAAGAATTTATGCAGCAATT+TGG + Chr3:77532269-77532288 None:intergenic 30.0%
GCACAAAATATACTACACTA+TGG - Chr3:77532858-77532877 MsG0380015985.01.T01:intron 30.0%
GCATTGAAAAAAGCTATCAT+GGG + Chr3:77533109-77533128 None:intergenic 30.0%
GGATATTGGAATAAAACTTC+TGG - Chr3:77532066-77532085 MsG0380015985.01.T01:intron 30.0%
TATACTACACTATGGACAAA+GGG - Chr3:77532866-77532885 MsG0380015985.01.T01:intron 30.0%
TCAGCTATCAATGATTATGA+TGG - Chr3:77530608-77530627 MsG0380015985.01.T01:CDS 30.0%
TCCAATAAGCCTATACAAAA+TGG + Chr3:77531445-77531464 None:intergenic 30.0%
TGGTCAAAAATGCATTATGT+CGG - Chr3:77531531-77531550 MsG0380015985.01.T01:CDS 30.0%
TGTTTGAGTGCAAAAGAAAA+GGG - Chr3:77531983-77532002 MsG0380015985.01.T01:intron 30.0%
TTATACGTGTGAAGAACATA+AGG - Chr3:77530661-77530680 MsG0380015985.01.T01:CDS 30.0%
TTGCTGCATAAATTCTTCTA+AGG - Chr3:77532271-77532290 MsG0380015985.01.T01:intron 30.0%
TTTGTATAGGCTTATTGGAT+TGG - Chr3:77531446-77531465 MsG0380015985.01.T01:intron 30.0%
! AGCAGCAATTTTTGTTAACT+CGG + Chr3:77531757-77531776 None:intergenic 30.0%
! AGCATTGAAAAAAGCTATCA+TGG + Chr3:77533110-77533129 None:intergenic 30.0%
! TCCATTTTGTATAGGCTTAT+TGG - Chr3:77531441-77531460 MsG0380015985.01.T01:intron 30.0%
! TCTAAAGTACCTGTGAATAA+TGG + Chr3:77532139-77532158 None:intergenic 30.0%
!! GGATTCATTTTAGCAGATAT+TGG - Chr3:77531230-77531249 MsG0380015985.01.T01:intron 30.0%
!!! GCACATATTGATTTTATAGC+GGG - Chr3:77533055-77533074 MsG0380015985.01.T01:CDS 30.0%
!!! TCCCTTTTTTCTAATGTAAC+AGG - Chr3:77531878-77531897 MsG0380015985.01.T01:CDS 30.0%
AATTCTCCAGAAGAATCGTT+GGG - Chr3:77531209-77531228 MsG0380015985.01.T01:intron 35.0%
AGAAAAAGGGGAATTCACTA+GGG + Chr3:77532920-77532939 None:intergenic 35.0%
AGTGTGACTTTATAACCTCA+AGG - Chr3:77532452-77532471 MsG0380015985.01.T01:intron 35.0%
ATCTGATGTACAAGATGTGA+AGG - Chr3:77532964-77532983 MsG0380015985.01.T01:CDS 35.0%
CAGATATTGGATTTGATGTG+TGG - Chr3:77531243-77531262 MsG0380015985.01.T01:intron 35.0%
CCATGTTGGATTAATATAGG+AGG + Chr3:77530932-77530951 None:intergenic 35.0%
CCTCCTATATTAATCCAACA+TGG - Chr3:77530929-77530948 MsG0380015985.01.T01:intron 35.0%
CTGTGAATAATGGCAATAAG+CGG + Chr3:77532129-77532148 None:intergenic 35.0%
GCTTCTGAATGTATTGAGAT+CGG - Chr3:77531689-77531708 MsG0380015985.01.T01:intron 35.0%
GTGTGACTTTATAACCTCAA+GGG - Chr3:77532453-77532472 MsG0380015985.01.T01:intron 35.0%
TAGCATCATGGTCATTATTG+AGG + Chr3:77533003-77533022 None:intergenic 35.0%
TATTTCTTCTCTTACGCATG+TGG + Chr3:77531936-77531955 None:intergenic 35.0%
TGGAGAATTGAACAACCATA+CGG + Chr3:77531198-77531217 None:intergenic 35.0%
TTACACAAAAGAGACCATGT+TGG + Chr3:77530946-77530965 None:intergenic 35.0%
TTGTGGTTCATGATCAAGAT+AGG + Chr3:77532303-77532322 None:intergenic 35.0%
TTTCTATTGAGCAGGGATAT+TGG - Chr3:77532052-77532071 MsG0380015985.01.T01:intron 35.0%
TTTGATGTGTGGCTTATCAA+TGG - Chr3:77531254-77531273 MsG0380015985.01.T01:intron 35.0%
! CAGTCTTATCTCAATAGTCT+TGG - Chr3:77530532-77530551 MsG0380015985.01.T01:CDS 35.0%
! GCAATTTTTGTTAACTCGGA+AGG + Chr3:77531753-77531772 None:intergenic 35.0%
! TAATGCATTTTTGACCAGTG+TGG + Chr3:77531528-77531547 None:intergenic 35.0%
! TGGTTATGTCATAAGTTGGA+GGG + Chr3:77532893-77532912 None:intergenic 35.0%
! TTCTTTGTTGATGTTGGTTG+TGG + Chr3:77532320-77532339 None:intergenic 35.0%
! TTGGTTATGTCATAAGTTGG+AGG + Chr3:77532894-77532913 None:intergenic 35.0%
!! GTGAAGTGTTTTTCTTCCTT+GGG + Chr3:77530573-77530592 None:intergenic 35.0%
!! TGTGAAGTGTTTTTCTTCCT+TGG + Chr3:77530574-77530593 None:intergenic 35.0%
ACTCAGGTTACAACAGATGA+TGG - Chr3:77530848-77530867 MsG0380015985.01.T01:intron 40.0%
ATGAATCCCAACGATTCTTC+TGG + Chr3:77531218-77531237 None:intergenic 40.0%
ATGGTACGTGAAATGCAACA+TGG + Chr3:77530701-77530720 None:intergenic 40.0%
CAATATGTGTACAACCACAC+TGG - Chr3:77531511-77531530 MsG0380015985.01.T01:CDS 40.0%
CAATTCTCCAGAAGAATCGT+TGG - Chr3:77531208-77531227 MsG0380015985.01.T01:intron 40.0%
CATCACTAAGTCCAATGACA+TGG - Chr3:77531306-77531325 MsG0380015985.01.T01:intron 40.0%
CATCCTTGAACAATACCACA+CGG + Chr3:77533030-77533049 None:intergenic 40.0%
CGCTTATTGCCATTATTCAC+AGG - Chr3:77532127-77532146 MsG0380015985.01.T01:CDS 40.0%
CTTTGCACGAAACTCTTAAG+CGG + Chr3:77531132-77531151 None:intergenic 40.0%
GAGAAAAAGGGGAATTCACT+AGG + Chr3:77532921-77532940 None:intergenic 40.0%
GATTTGAACTATGTCCCTTG+AGG + Chr3:77532470-77532489 None:intergenic 40.0%
TACACATATTGTGCTGAAGC+AGG + Chr3:77531502-77531521 None:intergenic 40.0%
TGGACTTAGTGATGTGTGAT+TGG + Chr3:77531300-77531319 None:intergenic 40.0%
! ATTCCCCTTTTTCTCAGCTA+TGG - Chr3:77532926-77532945 MsG0380015985.01.T01:intron 40.0%
! CTTAAGCGGTGACAAGATTT+TGG + Chr3:77531118-77531137 None:intergenic 40.0%
! CTTGAGTGATCACGAGATTT+TGG - Chr3:77531020-77531039 MsG0380015985.01.T01:intron 40.0%
! TTTTGAGCAGTGATCAGATC+AGG - Chr3:77532804-77532823 MsG0380015985.01.T01:intron 40.0%
!! AGGCTTATTGGATTGGTCAT+GGG - Chr3:77531453-77531472 MsG0380015985.01.T01:intron 40.0%
!! ATCACGAGATTTTGGTCACA+AGG - Chr3:77531028-77531047 MsG0380015985.01.T01:intron 40.0%
!! GAGATTTTGGTCACAAGGTT+CGG - Chr3:77531033-77531052 MsG0380015985.01.T01:intron 40.0%
!! TAGGCTTATTGGATTGGTCA+TGG - Chr3:77531452-77531471 MsG0380015985.01.T01:intron 40.0%
!!! GCTTTTGCTGCTTTATCTCA+AGG - Chr3:77531663-77531682 MsG0380015985.01.T01:intron 40.0%
ACGCATGTGGAACGAATTCA+CGG + Chr3:77531923-77531942 None:intergenic 45.0%
ATAAGCGGTTTGTGCAGTTG+AGG + Chr3:77532114-77532133 None:intergenic 45.0%
CAACCGTGTGGTATTGTTCA+AGG - Chr3:77533024-77533043 MsG0380015985.01.T01:CDS 45.0%
CCCTCCATAGCTGAGAAAAA+GGG + Chr3:77532933-77532952 None:intergenic 45.0%
CCTCCATAGCTGAGAAAAAG+GGG + Chr3:77532932-77532951 None:intergenic 45.0%
GCATTATGTCGGTCATTCTC+AGG - Chr3:77531542-77531561 MsG0380015985.01.T01:CDS 45.0%
TAAGCGGTTTGTGCAGTTGA+GGG + Chr3:77532113-77532132 None:intergenic 45.0%
TATTTCAGGATGCTGCCGTA+TGG - Chr3:77531180-77531199 MsG0380015985.01.T01:intron 45.0%
TGGTCATGGGATGAATTAGC+TGG - Chr3:77531466-77531485 MsG0380015985.01.T01:intron 45.0%
! AGTGTTTTTCTTCCTTGGGC+TGG + Chr3:77530569-77530588 None:intergenic 45.0%
! CCCTTTTTCTCAGCTATGGA+GGG - Chr3:77532930-77532949 MsG0380015985.01.T01:intron 45.0%
! GGGGAATTCACTAGGGATTT+TGG + Chr3:77532913-77532932 None:intergenic 45.0%
GCCCTCCATAGCTGAGAAAA+AGG + Chr3:77532934-77532953 None:intergenic 50.0%
GGTTTGTGCAGTTGAGGGAT+AGG + Chr3:77532108-77532127 None:intergenic 50.0%
GTGTGGCTTATCAATGGTCG+AGG - Chr3:77531260-77531279 MsG0380015985.01.T01:intron 50.0%
TGTGCAGTTGAGGGATAGGA+CGG + Chr3:77532104-77532123 None:intergenic 50.0%
! CCCCTTTTTCTCAGCTATGG+AGG - Chr3:77532929-77532948 MsG0380015985.01.T01:intron 50.0%
! GTTTTCATTGCACCAGCCCA+AGG - Chr3:77530554-77530573 MsG0380015985.01.T01:CDS 50.0%
AGGGAGGTCTGGCAAGAAAG+CGG - Chr3:77530901-77530920 MsG0380015985.01.T01:intron 55.0%
CCACACGGTTGCTAGCATCA+TGG + Chr3:77533015-77533034 None:intergenic 55.0%
CCATGATGCTAGCAACCGTG+TGG - Chr3:77533012-77533031 MsG0380015985.01.T01:CDS 55.0%
GCTACATCTTGAGCCTGCAG+AGG - Chr3:77530870-77530889 MsG0380015985.01.T01:intron 55.0%
TTCTTGCCAGACCTCCCTAC+CGG + Chr3:77530899-77530918 None:intergenic 55.0%
CTTGAGCCTGCAGAGGATCC+CGG - Chr3:77530877-77530896 MsG0380015985.01.T01:intron 60.0%
TCTTGCCAGACCTCCCTACC+GGG + Chr3:77530898-77530917 None:intergenic 60.0%
AGCCTGCAGAGGATCCCGGT+AGG - Chr3:77530881-77530900 MsG0380015985.01.T01:intron 65.0%
AGGATCCCGGTAGGGAGGTC+TGG - Chr3:77530890-77530909 MsG0380015985.01.T01:intron 65.0%
GCCTGCAGAGGATCCCGGTA+GGG - Chr3:77530882-77530901 MsG0380015985.01.T01:intron 65.0%
TCCCTACCGGGATCCTCTGC+AGG + Chr3:77530886-77530905 None:intergenic 65.0%
TGCAGAGGATCCCGGTAGGG+AGG - Chr3:77530885-77530904 MsG0380015985.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 77530506 77533135 77530506 ID=MsG0380015985.01;Name=MsG0380015985.01
Chr3 mRNA 77530506 77533135 77530506 ID=MsG0380015985.01.T01;Parent=MsG0380015985.01;Name=MsG0380015985.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0.16|0.42|1|1|1|7|0|296
Chr3 exon 77532959 77533135 77532959 ID=MsG0380015985.01.T01:exon:1480;Parent=MsG0380015985.01.T01
Chr3 exon 77532680 77532787 77532680 ID=MsG0380015985.01.T01:exon:1479;Parent=MsG0380015985.01.T01
Chr3 exon 77532366 77532453 77532366 ID=MsG0380015985.01.T01:exon:1478;Parent=MsG0380015985.01.T01
Chr3 exon 77532089 77532186 77532089 ID=MsG0380015985.01.T01:exon:1477;Parent=MsG0380015985.01.T01
Chr3 exon 77531847 77531990 77531847 ID=MsG0380015985.01.T01:exon:1476;Parent=MsG0380015985.01.T01
Chr3 exon 77531493 77531575 77531493 ID=MsG0380015985.01.T01:exon:1475;Parent=MsG0380015985.01.T01
Chr3 exon 77530506 77530698 77530506 ID=MsG0380015985.01.T01:exon:1474;Parent=MsG0380015985.01.T01
Chr3 CDS 77532959 77533135 77532959 ID=MsG0380015985.01.T01:cds;Parent=MsG0380015985.01.T01
Chr3 CDS 77532680 77532787 77532680 ID=MsG0380015985.01.T01:cds;Parent=MsG0380015985.01.T01
Chr3 CDS 77532366 77532453 77532366 ID=MsG0380015985.01.T01:cds;Parent=MsG0380015985.01.T01
Chr3 CDS 77532089 77532186 77532089 ID=MsG0380015985.01.T01:cds;Parent=MsG0380015985.01.T01
Chr3 CDS 77531847 77531990 77531847 ID=MsG0380015985.01.T01:cds;Parent=MsG0380015985.01.T01
Chr3 CDS 77531493 77531575 77531493 ID=MsG0380015985.01.T01:cds;Parent=MsG0380015985.01.T01
Chr3 CDS 77530506 77530698 77530506 ID=MsG0380015985.01.T01:cds;Parent=MsG0380015985.01.T01
Gene Sequence

>MsG0380015985.01.T01

ATGGTTAGCACACACACAGTAGTAGTCAGTCTTATCTCAATAGTCTTGGTTTTCATTGCACCAGCCCAAGGAAGAAAAACACTTCACACATACAATGAATTTTCAGCTATCAATGATTATGATGGTATTTGCAACACTATAGTAGAGAAACAAGGTTATACGTGTGAAGAACATAAGGTTACAACAGATGATGGCTACATCTTGAGCCTGCAGAGGATCCCGGTAGGGAGGTCTGGCAAGAAAGCGGACAAGCCTCCTATATTAATCCAACATGGTCTCTTTTGTGATGCTGCCGTATGGTTGTTCAATTCTCCAGAAGAATCGTTGGGATTCATTTTAGCAGATATTGGATTTGATGTGTGGCTTATCAATGGCTTATTGGATTGGTCATGGGATGAATTAGCTGGTTATGATCTACCTGCTTCAGCACAATATGTGTACAACCACACTGGTCAAAAATGCATTATGTCGGGAACTTTAATAGCTTTTGCTGCTTTATCTCAAGGAAAGCTTCTGAATGTATTGAGATCGGCTGCATTACTTAGTCCAATTGCTCATATGACTCAAATTCCTTCCGAGTTAACAAAAATTGCTGCTGAACTCTTTTTAGCTAATGGATATTGGAATAAAACTTCTGGATGGCATCTGCACCGTCCTATCCCTCAACTGCACAAACCGCTTATTGCCATTATTCACAGCTATGGAGGGCAAGATACTCTATCTGATGTACAAGATGTGAAGGTTTTGTTCAATGACCTCAATAATGACCATGATGCTAGCAACCGTGTGGTATTGTTCAAGGATGATTATGCACATATTGATTTTATAGCGGGTGACAATGCTAAACAAGTTGTTTATGATCCCATGATAGCTTTTTTCAATGCTCATTGA

Protein sequence

>MsG0380015985.01.T01

MVSTHTVVVSLISIVLVFIAPAQGRKTLHTYNEFSAINDYDGICNTIVEKQGYTCEEHKVTTDDGYILSLQRIPVGRSGKKADKPPILIQHGLFCDAAVWLFNSPEESLGFILADIGFDVWLINGLLDWSWDELAGYDLPASAQYVYNHTGQKCIMSGTLIAFAALSQGKLLNVLRSAALLSPIAHMTQIPSELTKIAAELFLANGYWNKTSGWHLHRPIPQLHKPLIAIIHSYGGQDTLSDVQDVKVLFNDLNNDHDASNRVVLFKDDYAHIDFIAGDNAKQVVYDPMIAFFNAH*