Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0299790 | XP_024631933.1 | 96.364 | 165 | 4 | 1 | 1 | 165 | 1 | 163 | 7.36e-113 | 327 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0299790 | sp|Q6R567|RMA1_CAPAN | 59.375 | 96 | 34 | 3 | 29 | 119 | 36 | 131 | 4.91e-33 | 120 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0299790 | A0A072VAR6 | 96.364 | 165 | 4 | 1 | 1 | 165 | 1 | 163 | 3.52e-113 | 327 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003470 | Msa0299790 | 0.812636 | 3.836455e-51 | -8.615850e-47 |
Msa0008850 | Msa0299790 | 0.831643 | 1.486378e-55 | -8.615850e-47 |
Msa0038310 | Msa0299790 | 0.813585 | 2.375611e-51 | -8.615850e-47 |
Msa0043940 | Msa0299790 | 0.801429 | 9.042330e-49 | -8.615850e-47 |
Msa0044710 | Msa0299790 | 0.801143 | 1.034856e-48 | -8.615850e-47 |
Msa0047470 | Msa0299790 | 0.856988 | 2.217217e-62 | -8.615850e-47 |
Msa0050720 | Msa0299790 | 0.818150 | 2.277605e-52 | -8.615850e-47 |
Msa0055280 | Msa0299790 | 0.808078 | 3.695410e-50 | -8.615850e-47 |
Msa0061150 | Msa0299790 | 0.800126 | 1.667980e-48 | -8.615850e-47 |
Msa0079250 | Msa0299790 | 0.825680 | 4.107924e-54 | -8.615850e-47 |
Msa0083160 | Msa0299790 | 0.810085 | 1.373286e-50 | -8.615850e-47 |
Msa0101060 | Msa0299790 | 0.804272 | 2.339092e-49 | -8.615850e-47 |
Msa0126900 | Msa0299790 | 0.802622 | 5.141658e-49 | -8.615850e-47 |
Msa0132620 | Msa0299790 | 0.804146 | 2.485141e-49 | -8.615850e-47 |
Msa0146470 | Msa0299790 | 0.810787 | 9.688774e-51 | -8.615850e-47 |
Msa0155610 | Msa0299790 | 0.834469 | 2.944128e-56 | -8.615850e-47 |
Msa0182930 | Msa0299790 | 0.800105 | 1.684903e-48 | -8.615850e-47 |
Msa0185390 | Msa0299790 | 0.808028 | 3.787032e-50 | -8.615850e-47 |
Msa0203180 | Msa0299790 | 0.827986 | 1.155061e-54 | -8.615850e-47 |
Msa0223100 | Msa0299790 | 0.805235 | 1.471969e-49 | -8.615850e-47 |
Msa0223290 | Msa0299790 | 0.811814 | 5.800349e-51 | -8.615850e-47 |
Msa0246300 | Msa0299790 | 0.818596 | 1.804848e-52 | -8.615850e-47 |
Msa0256880 | Msa0299790 | 0.821233 | 4.502535e-53 | -8.615850e-47 |
Msa0259330 | Msa0299790 | 0.810507 | 1.113583e-50 | -8.615850e-47 |
Msa0261970 | Msa0299790 | 0.912512 | 1.790259e-83 | -8.615850e-47 |
Msa0265580 | Msa0299790 | 0.809277 | 2.048724e-50 | -8.615850e-47 |
Msa0281940 | Msa0299790 | 0.807677 | 4.498330e-50 | -8.615850e-47 |
Msa0284870 | Msa0299790 | 0.833704 | 4.577370e-56 | -8.615850e-47 |
Msa0288240 | Msa0299790 | 0.813058 | 3.101510e-51 | -8.615850e-47 |
Msa0299790 | Msa0302650 | 0.830643 | 2.615879e-55 | -8.615850e-47 |
Msa0299790 | Msa0357380 | 0.809399 | 1.929367e-50 | -8.615850e-47 |
Msa0299790 | Msa0387790 | 0.804532 | 2.065168e-49 | -8.615850e-47 |
Msa0299790 | Msa0401340 | 0.804614 | 1.985360e-49 | -8.615850e-47 |
Msa0299790 | Msa0421800 | 0.813978 | 1.946957e-51 | -8.615850e-47 |
Msa0299790 | Msa0431520 | 0.845613 | 3.641581e-59 | -8.615850e-47 |
Msa0299790 | Msa0431830 | 0.848276 | 6.793072e-60 | -8.615850e-47 |
Msa0299790 | Msa0440130 | -0.800948 | 1.134041e-48 | -8.615850e-47 |
Msa0299790 | Msa0448080 | 0.824011 | 1.017026e-53 | -8.615850e-47 |
Msa0299790 | Msa0467800 | 0.820948 | 5.237159e-53 | -8.615850e-47 |
Msa0299790 | Msa0467880 | 0.824963 | 6.070740e-54 | -8.615850e-47 |
Msa0299790 | Msa0472740 | 0.800706 | 1.270890e-48 | -8.615850e-47 |
Msa0299790 | Msa0514260 | 0.806942 | 6.436483e-50 | -8.615850e-47 |
Msa0299790 | Msa0520220 | 0.813341 | 2.688373e-51 | -8.615850e-47 |
Msa0299790 | Msa0534420 | 0.835338 | 1.778933e-56 | -8.615850e-47 |
Msa0299790 | Msa0549740 | 0.809162 | 2.168478e-50 | -8.615850e-47 |
Msa0299790 | Msa0576600 | 0.826265 | 2.983484e-54 | -8.615850e-47 |
Msa0299790 | Msa0577230 | 0.803689 | 3.092318e-49 | -8.615850e-47 |
Msa0299790 | Msa0593810 | 0.807967 | 3.901253e-50 | -8.615850e-47 |
Msa0299790 | Msa0607280 | 0.801437 | 9.006431e-49 | -8.615850e-47 |
Msa0299790 | Msa0617830 | 0.829691 | 4.466849e-55 | -8.615850e-47 |
Msa0299790 | Msa0620640 | 0.809033 | 2.311438e-50 | -8.615850e-47 |
Msa0299790 | Msa0651400 | 0.806052 | 9.920575e-50 | -8.615850e-47 |
Msa0299790 | Msa0656270 | 0.805361 | 1.385291e-49 | -8.615850e-47 |
Msa0299790 | Msa0656680 | 0.821366 | 4.195941e-53 | -8.615850e-47 |
Msa0299790 | Msa0659040 | 0.805002 | 1.647415e-49 | -8.615850e-47 |
Msa0299790 | Msa0686610 | 0.801885 | 7.291332e-49 | -8.615850e-47 |
Msa0299790 | Msa0692110 | 0.826327 | 2.883610e-54 | -8.615850e-47 |
Msa0299790 | Msa0700070 | 0.806261 | 8.964826e-50 | -8.615850e-47 |
Msa0299790 | Msa0703460 | 0.804423 | 2.175802e-49 | -8.615850e-47 |
Msa0299790 | Msa0714340 | 0.810293 | 1.239072e-50 | -8.615850e-47 |
Msa0299790 | Msa0714380 | 0.800602 | 1.334248e-48 | -8.615850e-47 |
Msa0299790 | Msa0717510 | 0.823417 | 1.400690e-53 | -8.615850e-47 |
Msa0299790 | Msa0724050 | 0.803326 | 3.677773e-49 | -8.615850e-47 |
Msa0299790 | Msa0738860 | 0.828093 | 1.088661e-54 | -8.615850e-47 |
Msa0299790 | Msa0738870 | 0.824464 | 7.959061e-54 | -8.615850e-47 |
Msa0299790 | Msa0738880 | 0.801759 | 7.737094e-49 | -8.615850e-47 |
Msa0299790 | Msa0763880 | 0.814895 | 1.220623e-51 | -8.615850e-47 |
Msa0299790 | Msa0763910 | 0.819638 | 1.045546e-52 | -8.615850e-47 |
Msa0299790 | Msa0787720 | 0.857707 | 1.358801e-62 | -8.615850e-47 |
Msa0299790 | Msa0812660 | 0.824428 | 8.114797e-54 | -8.615850e-47 |
Msa0299790 | Msa0819360 | 0.821621 | 3.662875e-53 | -8.615850e-47 |
Msa0299790 | Msa0830720 | 0.808858 | 2.519197e-50 | -8.615850e-47 |
Msa0299790 | Msa0851740 | 0.810026 | 1.414443e-50 | -8.615850e-47 |
Msa0299790 | Msa0859520 | 0.805948 | 1.043160e-49 | -8.615850e-47 |
Msa0299790 | Msa0859530 | 0.823734 | 1.180769e-53 | -8.615850e-47 |
Msa0299790 | Msa0922540 | 0.810941 | 8.973427e-51 | -8.615850e-47 |
Msa0299790 | Msa0934830 | 0.842429 | 2.600746e-58 | -8.615850e-47 |
Msa0299790 | Msa0942730 | 0.812080 | 5.076270e-51 | -8.615850e-47 |
Msa0299790 | Msa0958020 | 0.833725 | 4.520830e-56 | -8.615850e-47 |
Msa0299790 | Msa0964680 | 0.813233 | 2.838711e-51 | -8.615850e-47 |
Msa0299790 | Msa0971860 | 0.855211 | 7.344869e-62 | -8.615850e-47 |
Msa0299790 | Msa1015060 | 0.814125 | 1.806795e-51 | -8.615850e-47 |
Msa0299790 | Msa1081000 | 0.801456 | 8.927889e-49 | -8.615850e-47 |
Msa0299790 | Msa1097380 | 0.829269 | 5.656305e-55 | -8.615850e-47 |
Msa0299790 | Msa1157730 | 0.813620 | 2.334585e-51 | -8.615850e-47 |
Msa0299790 | Msa1198450 | 0.821245 | 4.473585e-53 | -8.615850e-47 |
Msa0299790 | Msa1218650 | 0.804717 | 1.889081e-49 | -8.615850e-47 |
Msa0299790 | Msa1220740 | 0.809847 | 1.545176e-50 | -8.615850e-47 |
Msa0299790 | Msa1238410 | 0.804934 | 1.702066e-49 | -8.615850e-47 |
Msa0299790 | Msa1287360 | 0.821598 | 3.708057e-53 | -8.615850e-47 |
Msa0299790 | Msa1334650 | 0.801950 | 7.068704e-49 | -8.615850e-47 |
Msa0299790 | Msa1354090 | 0.808930 | 2.430644e-50 | -8.615850e-47 |
Msa0299790 | Msa1378460 | 0.813520 | 2.455575e-51 | -8.615850e-47 |
Msa0299790 | Msa1378470 | 0.833417 | 5.396149e-56 | -8.615850e-47 |
Msa0299790 | Msa1381130 | 0.806660 | 7.386380e-50 | -8.615850e-47 |
Msa0299790 | Msa1397970 | 0.840670 | 7.558486e-58 | -8.615850e-47 |
Msa0299790 | Msa1412080 | 0.815164 | 1.063701e-51 | -8.615850e-47 |
Msa0299790 | Msa1427830 | 0.800903 | 1.158451e-48 | -8.615850e-47 |
Msa0299790 | Msa1431730 | 0.825288 | 5.086611e-54 | -8.615850e-47 |
Msa0299790 | Msa1432640 | 0.811827 | 5.760706e-51 | -8.615850e-47 |
Msa0299790 | Msa1439230 | 0.800788 | 1.222572e-48 | -8.615850e-47 |
Msa0299790 | Msa1440180 | 0.839823 | 1.258400e-57 | -8.615850e-47 |
Msa0299790 | Msa1440610 | 0.811204 | 7.870532e-51 | -8.615850e-47 |
Msa0299790 | Msa1449740 | 0.840312 | 9.380259e-58 | -8.615850e-47 |
Msa0299790 | Msa1454110 | 0.822112 | 2.820165e-53 | -8.615850e-47 |
Msa0299790 | Msa1455660 | 0.801994 | 6.923799e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0299790 | MtrunA17_Chr2g0324291 | 96.364 | 165 | 4 | 1 | 1 | 165 | 1 | 163 | 6.77e-117 | 327 |
Msa0299790 | MtrunA17_Chr4g0021321 | 58.475 | 118 | 45 | 1 | 22 | 135 | 34 | 151 | 2.35e-46 | 151 |
Msa0299790 | MtrunA17_Chr2g0324261 | 64.545 | 110 | 29 | 2 | 29 | 128 | 37 | 146 | 6.09e-45 | 148 |
Msa0299790 | MtrunA17_Chr2g0324281 | 60.465 | 129 | 31 | 4 | 17 | 135 | 3 | 121 | 7.52e-45 | 146 |
Msa0299790 | MtrunA17_Chr2g0282171 | 46.715 | 137 | 63 | 4 | 2 | 133 | 1 | 132 | 3.57e-33 | 117 |
Msa0299790 | MtrunA17_Chr8g0360011 | 59.551 | 89 | 34 | 1 | 29 | 115 | 32 | 120 | 1.65e-32 | 116 |
Msa0299790 | MtrunA17_Chr4g0047371 | 43.165 | 139 | 70 | 5 | 6 | 137 | 7 | 143 | 1.88e-31 | 112 |
Msa0299790 | MtrunA17_Chr4g0047381 | 45.690 | 116 | 55 | 3 | 6 | 115 | 7 | 120 | 3.49e-29 | 107 |
Msa0299790 | MtrunA17_Chr5g0403521 | 48.889 | 90 | 41 | 2 | 30 | 119 | 33 | 117 | 1.79e-28 | 105 |
Msa0299790 | MtrunA17_Chr1g0154561 | 48.352 | 91 | 42 | 2 | 29 | 119 | 29 | 114 | 1.23e-27 | 103 |
Msa0299790 | MtrunA17_Chr1g0175871 | 37.190 | 121 | 63 | 5 | 3 | 115 | 28 | 143 | 1.48e-23 | 91.7 |
Msa0299790 | MtrunA17_Chr1g0175571 | 35.294 | 136 | 72 | 5 | 2 | 128 | 86 | 214 | 1.39e-22 | 89.7 |
Msa0299790 | MtrunA17_Chr7g0258821 | 43.182 | 88 | 43 | 2 | 32 | 119 | 170 | 250 | 2.05e-22 | 92.4 |
Msa0299790 | MtrunA17_Chr1g0175641 | 42.857 | 84 | 44 | 2 | 32 | 115 | 76 | 155 | 2.82e-21 | 85.5 |
Msa0299790 | MtrunA17_Chr2g0308681 | 38.889 | 90 | 51 | 1 | 30 | 119 | 105 | 190 | 2.03e-19 | 81.6 |
Msa0299790 | MtrunA17_Chr1g0150921 | 36.986 | 73 | 39 | 1 | 19 | 91 | 351 | 416 | 1.50e-12 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0299790 | AT4G03510.3 | 54.545 | 99 | 36 | 2 | 24 | 118 | 38 | 131 | 3.10e-33 | 118 |
Msa0299790 | AT4G03510.1 | 54.545 | 99 | 36 | 2 | 24 | 118 | 38 | 131 | 3.10e-33 | 118 |
Msa0299790 | AT4G03510.2 | 54.545 | 99 | 36 | 2 | 24 | 118 | 38 | 131 | 3.10e-33 | 118 |
Msa0299790 | AT4G03510.4 | 54.545 | 99 | 36 | 2 | 24 | 118 | 38 | 131 | 3.10e-33 | 118 |
Msa0299790 | AT4G28270.1 | 48.305 | 118 | 43 | 5 | 29 | 137 | 16 | 124 | 5.12e-32 | 113 |
Msa0299790 | AT1G74990.1 | 46.667 | 105 | 47 | 3 | 29 | 133 | 14 | 109 | 5.53e-29 | 104 |
Msa0299790 | AT2G23780.3 | 46.465 | 99 | 47 | 3 | 21 | 119 | 16 | 108 | 2.13e-27 | 102 |
Msa0299790 | AT2G23780.2 | 46.465 | 99 | 47 | 3 | 21 | 119 | 16 | 108 | 2.13e-27 | 102 |
Msa0299790 | AT2G23780.1 | 46.465 | 99 | 47 | 3 | 21 | 119 | 16 | 108 | 2.13e-27 | 102 |
Msa0299790 | AT1G19310.1 | 51.136 | 88 | 38 | 2 | 32 | 119 | 21 | 103 | 1.20e-26 | 100 |
Msa0299790 | AT4G27470.1 | 48.598 | 107 | 46 | 5 | 32 | 131 | 42 | 146 | 2.51e-26 | 100 |
Msa0299790 | AT3G58030.4 | 46.341 | 82 | 34 | 2 | 13 | 94 | 123 | 194 | 4.91e-22 | 91.7 |
Msa0299790 | AT3G58030.2 | 46.341 | 82 | 34 | 2 | 13 | 94 | 123 | 194 | 4.91e-22 | 91.7 |
Msa0299790 | AT3G58030.1 | 46.341 | 82 | 34 | 2 | 13 | 94 | 123 | 194 | 4.91e-22 | 91.7 |
Msa0299790 | AT3G58030.3 | 46.341 | 82 | 34 | 2 | 13 | 94 | 123 | 194 | 4.91e-22 | 91.7 |
Msa0299790 | AT2G42030.1 | 46.067 | 89 | 40 | 2 | 32 | 120 | 139 | 219 | 7.61e-22 | 91.3 |
Msa0299790 | AT2G44410.1 | 37.500 | 88 | 51 | 1 | 32 | 119 | 123 | 206 | 9.34e-18 | 79.7 |
Find 61 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTAGTTATGTTCAAGTTTA+AGG | 0.077508 | 2_3:+55017162 | None:intergenic |
GCAAATCAGAATTGTATAAT+TGG | 0.168253 | 2_3:+55017626 | None:intergenic |
TTCCGGAAATCAAGCTTATA+TGG | 0.186494 | 2_3:+55015941 | None:intergenic |
ATGTATTCTGCTGCCAATTA+AGG | 0.216460 | 2_3:-55017553 | Msa0299790:five_prime_UTR |
GAAATTTCTGATTTGCATAT+TGG | 0.222866 | 2_3:+55016181 | None:intergenic |
ATGATATTCAATCAAATTTC+CGG | 0.230037 | 2_3:+55015924 | None:intergenic |
GATTTGCATATTGGACATTC+TGG | 0.274453 | 2_3:+55016190 | None:intergenic |
GCTTCTGCTTGTTCTAGTTC+AGG | 0.300850 | 2_3:+55016022 | None:intergenic |
TTGCACATTTGCTTACAATA+TGG | 0.306524 | 2_3:-55015965 | Msa0299790:CDS |
GCCCATATAAGCTTGATTTC+CGG | 0.309807 | 2_3:-55015943 | Msa0299790:CDS |
TCAACACTTGTTCCACTATA+TGG | 0.312394 | 2_3:-55016154 | Msa0299790:CDS |
CAAATCAGAATTGTATAATT+GGG | 0.350457 | 2_3:+55017627 | None:intergenic |
GCACCATATGCTAGTGCTAA+TGG | 0.364544 | 2_3:-55016413 | Msa0299790:exon |
AATTGTATAATTGGGGTGGG+GGG | 0.367699 | 2_3:+55017635 | None:intergenic |
AGCAGAAGCACCACCAGCAC+AGG | 0.376264 | 2_3:-55015996 | Msa0299790:CDS |
ATTGTATAATTGGGGTGGGG+GGG | 0.397306 | 2_3:+55017636 | None:intergenic |
AAGAGGTAACTTGGACATAA+AGG | 0.400504 | 2_3:-55017268 | Msa0299790:five_prime_UTR |
TTTGTGGTCATCTCTATTGT+TGG | 0.402478 | 2_3:-55016264 | Msa0299790:CDS |
TAATGGACATTCTGTCGAAC+CGG | 0.412747 | 2_3:-55016396 | Msa0299790:CDS |
CGCTTTAGCATGTATTGAAT+CGG | 0.416757 | 2_3:-55015878 | Msa0299790:three_prime_UTR |
TTCCAACACAAGAGGTAACT+TGG | 0.424249 | 2_3:-55017277 | Msa0299790:five_prime_UTR |
GAATTGTATAATTGGGGTGG+GGG | 0.435784 | 2_3:+55017634 | None:intergenic |
GTTGGCCTTGTATTTACAAA+TGG | 0.435974 | 2_3:-55016246 | Msa0299790:CDS |
TCCGGAAATCAAGCTTATAT+GGG | 0.455288 | 2_3:+55015942 | None:intergenic |
GTTGCAGTATCAAGTGATCT+TGG | 0.469495 | 2_3:+55016055 | None:intergenic |
GATCCAGTGGTAACACTTTG+TGG | 0.471364 | 2_3:-55016280 | Msa0299790:CDS |
GAAAGTTAGTTGTGTGATGA+AGG | 0.480952 | 2_3:+55017504 | None:intergenic |
GATCTTGGACCAAGTGGTCT+TGG | 0.481662 | 2_3:+55016070 | None:intergenic |
AGAATTGTATAATTGGGGTG+GGG | 0.483331 | 2_3:+55017633 | None:intergenic |
AAGTGATGGTGATGATGTGC+AGG | 0.486214 | 2_3:+55017478 | None:intergenic |
GTCCAAGTTACCTCTTGTGT+TGG | 0.487804 | 2_3:+55017275 | None:intergenic |
GTTTCACCACGACCATATAG+TGG | 0.492063 | 2_3:+55016142 | None:intergenic |
GAAGGTGAGGCTCATCAAGA+TGG | 0.515188 | 2_3:-55016106 | Msa0299790:CDS |
AATGGACATTCTGTCGAACC+GGG | 0.527440 | 2_3:-55016395 | Msa0299790:CDS |
TGTCCATTAGCACTAGCATA+TGG | 0.529146 | 2_3:+55016410 | None:intergenic |
TTAATCCATTTGTAAATACA+AGG | 0.530718 | 2_3:+55016241 | None:intergenic |
CAGAATTGTATAATTGGGGT+GGG | 0.533357 | 2_3:+55017632 | None:intergenic |
CTTGGACCAAGTGGTCTTGG+TGG | 0.541843 | 2_3:+55016073 | None:intergenic |
CTCACCTTCAGAACTTGATG+TGG | 0.546869 | 2_3:+55016120 | None:intergenic |
AATGGATTAATAGCACCTCA+TGG | 0.547502 | 2_3:-55016228 | Msa0299790:CDS |
CATTAGCATCAGCTTTGCCC+CGG | 0.566386 | 2_3:+55016377 | None:intergenic |
TGCAAACTACTCTCCTGTGC+TGG | 0.567244 | 2_3:+55015983 | None:intergenic |
AAGGTGAGGCTCATCAAGAT+GGG | 0.576426 | 2_3:-55016105 | Msa0299790:CDS |
TCAGAATTGTATAATTGGGG+TGG | 0.577261 | 2_3:+55017631 | None:intergenic |
CACATCAAGTTCTGAAGGTG+AGG | 0.577593 | 2_3:-55016119 | Msa0299790:CDS |
ACCGTGCTGTTACAAGCTGA+AGG | 0.578295 | 2_3:+55017019 | None:intergenic |
CTTACATAGCTAAGAAGTGA+TGG | 0.578724 | 2_3:+55017464 | None:intergenic |
AAACTACTCTCCTGTGCTGG+TGG | 0.580631 | 2_3:+55015986 | None:intergenic |
GTTGTACCACCAAGACCACT+TGG | 0.583553 | 2_3:-55016079 | Msa0299790:CDS |
AAATCAGAATTGTATAATTG+GGG | 0.592797 | 2_3:+55017628 | None:intergenic |
ATGGATTAATAGCACCTCAT+GGG | 0.600842 | 2_3:-55016227 | Msa0299790:CDS |
TGACCACAAAGTGTTACCAC+TGG | 0.610639 | 2_3:+55016277 | None:intergenic |
GAAACCACATCAAGTTCTGA+AGG | 0.614193 | 2_3:-55016124 | Msa0299790:CDS |
CTTGTTCCACTATATGGTCG+TGG | 0.622216 | 2_3:-55016148 | Msa0299790:CDS |
CCCTTCAGCTTGTAACAGCA+CGG | 0.625188 | 2_3:-55017020 | Msa0299790:intron |
TTTCTCATTATGTTCCCATG+AGG | 0.630818 | 2_3:+55016213 | None:intergenic |
CCGTGCTGTTACAAGCTGAA+GGG | 0.637119 | 2_3:+55017020 | None:intergenic |
TCAAGTGATCTTGGACCAAG+TGG | 0.644730 | 2_3:+55016064 | None:intergenic |
GGAGCATGTGAAAGATCCAG+TGG | 0.680623 | 2_3:-55016293 | Msa0299790:CDS |
AGTGATGGTGATGATGTGCA+GGG | 0.694895 | 2_3:+55017479 | None:intergenic |
ATGGACATTCTGTCGAACCG+GGG | 0.697290 | 2_3:-55016394 | Msa0299790:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAGAAAATACTAATATTTA+GGG | - | chr2_3:55016775-55016794 | Msa0299790:intron | 15.0% |
!! | AGAGAAAATACTAATATTTA+GGG | - | chr2_3:55016775-55016794 | Msa0299790:intron | 15.0% |
!! | AAATCAGAATTGTATAATTG+GGG | + | chr2_3:55015898-55015917 | None:intergenic | 20.0% |
!! | CAAATCAGAATTGTATAATT+GGG | + | chr2_3:55015899-55015918 | None:intergenic | 20.0% |
!!! | ATTAGTTATGTTCAAGTTTA+AGG | + | chr2_3:55016364-55016383 | None:intergenic | 20.0% |
!! | ATCTCTTTCAGAAAAAATAA+AGG | + | chr2_3:55016579-55016598 | None:intergenic | 20.0% |
!! | ATGAATGAAACTTCATTTAT+TGG | - | chr2_3:55016638-55016657 | Msa0299790:intron | 20.0% |
!!! | AAATCATTCAAAGATTTTGA+AGG | - | chr2_3:55016685-55016704 | Msa0299790:intron | 20.0% |
!! | CAGAGAAAATACTAATATTT+AGG | - | chr2_3:55016774-55016793 | Msa0299790:intron | 20.0% |
!!! | ACTTTTTTTAAGTTTCAAGT+TGG | - | chr2_3:55016816-55016835 | Msa0299790:intron | 20.0% |
!!! | CTTTTTTTAAGTTTCAAGTT+GGG | - | chr2_3:55016817-55016836 | Msa0299790:intron | 20.0% |
!!! | TTATGTATGACATTTTAAGT+TGG | - | chr2_3:55016956-55016975 | Msa0299790:intron | 20.0% |
!! | TGTCATAATTCATACAAATT+AGG | + | chr2_3:55016995-55017014 | None:intergenic | 20.0% |
!! | TTAATCCATTTGTAAATACA+AGG | + | chr2_3:55017285-55017304 | None:intergenic | 20.0% |
!! | ATGATATTCAATCAAATTTC+CGG | + | chr2_3:55017602-55017621 | None:intergenic | 20.0% |
!! | AAATCAGAATTGTATAATTG+GGG | + | chr2_3:55015898-55015917 | None:intergenic | 20.0% |
!! | CAAATCAGAATTGTATAATT+GGG | + | chr2_3:55015899-55015918 | None:intergenic | 20.0% |
!!! | ATTAGTTATGTTCAAGTTTA+AGG | + | chr2_3:55016364-55016383 | None:intergenic | 20.0% |
!! | ATCTCTTTCAGAAAAAATAA+AGG | + | chr2_3:55016579-55016598 | None:intergenic | 20.0% |
!! | ATGAATGAAACTTCATTTAT+TGG | - | chr2_3:55016638-55016657 | Msa0299790:intron | 20.0% |
!!! | AAATCATTCAAAGATTTTGA+AGG | - | chr2_3:55016685-55016704 | Msa0299790:intron | 20.0% |
!! | CAGAGAAAATACTAATATTT+AGG | - | chr2_3:55016774-55016793 | Msa0299790:intron | 20.0% |
!!! | ACTTTTTTTAAGTTTCAAGT+TGG | - | chr2_3:55016816-55016835 | Msa0299790:intron | 20.0% |
!!! | CTTTTTTTAAGTTTCAAGTT+GGG | - | chr2_3:55016817-55016836 | Msa0299790:intron | 20.0% |
!!! | TTATGTATGACATTTTAAGT+TGG | - | chr2_3:55016956-55016975 | Msa0299790:intron | 20.0% |
!! | TGTCATAATTCATACAAATT+AGG | + | chr2_3:55016995-55017014 | None:intergenic | 20.0% |
!! | TTAATCCATTTGTAAATACA+AGG | + | chr2_3:55017285-55017304 | None:intergenic | 20.0% |
!! | ATGATATTCAATCAAATTTC+CGG | + | chr2_3:55017602-55017621 | None:intergenic | 20.0% |
! | GCAAATCAGAATTGTATAAT+TGG | + | chr2_3:55015900-55015919 | None:intergenic | 25.0% |
! | CAAAGTGAAAAATCCTTAAT+TGG | + | chr2_3:55015986-55016005 | None:intergenic | 25.0% |
!! | ATTGTTAACTCGTAAGTTTT+TGG | + | chr2_3:55016171-55016190 | None:intergenic | 25.0% |
! | AAAAACTTACGAGTTAACAA+TGG | - | chr2_3:55016170-55016189 | Msa0299790:CDS | 25.0% |
!!! | GATGCAAGTTTTTTACATAA+AGG | - | chr2_3:55016304-55016323 | Msa0299790:CDS | 25.0% |
!! | TTTTGTTGAAAATGAAGCAA+AGG | - | chr2_3:55016543-55016562 | Msa0299790:intron | 25.0% |
! | TTACAAACAAATTGTACTTG+TGG | + | chr2_3:55016928-55016947 | None:intergenic | 25.0% |
! | TGAATTATGACAAATGTTAG+AGG | - | chr2_3:55017003-55017022 | Msa0299790:intron | 25.0% |
! | GAATTATGACAAATGTTAGA+GGG | - | chr2_3:55017004-55017023 | Msa0299790:intron | 25.0% |
! | AATTATGACAAATGTTAGAG+GGG | - | chr2_3:55017005-55017024 | Msa0299790:intron | 25.0% |
!! | TTTTGAATGCAACATATGTT+TGG | - | chr2_3:55017209-55017228 | Msa0299790:five_prime_UTR | 25.0% |
!! | GAAATTTCTGATTTGCATAT+TGG | + | chr2_3:55017345-55017364 | None:intergenic | 25.0% |
! | GCAAATCAGAATTGTATAAT+TGG | + | chr2_3:55015900-55015919 | None:intergenic | 25.0% |
! | CAAAGTGAAAAATCCTTAAT+TGG | + | chr2_3:55015986-55016005 | None:intergenic | 25.0% |
!! | ATTGTTAACTCGTAAGTTTT+TGG | + | chr2_3:55016171-55016190 | None:intergenic | 25.0% |
! | AAAAACTTACGAGTTAACAA+TGG | - | chr2_3:55016170-55016189 | Msa0299790:CDS | 25.0% |
!!! | GATGCAAGTTTTTTACATAA+AGG | - | chr2_3:55016304-55016323 | Msa0299790:CDS | 25.0% |
!! | TTTTGTTGAAAATGAAGCAA+AGG | - | chr2_3:55016543-55016562 | Msa0299790:intron | 25.0% |
! | TTACAAACAAATTGTACTTG+TGG | + | chr2_3:55016928-55016947 | None:intergenic | 25.0% |
! | TGAATTATGACAAATGTTAG+AGG | - | chr2_3:55017003-55017022 | Msa0299790:intron | 25.0% |
! | GAATTATGACAAATGTTAGA+GGG | - | chr2_3:55017004-55017023 | Msa0299790:intron | 25.0% |
! | AATTATGACAAATGTTAGAG+GGG | - | chr2_3:55017005-55017024 | Msa0299790:intron | 25.0% |
!! | TTTTGAATGCAACATATGTT+TGG | - | chr2_3:55017209-55017228 | Msa0299790:five_prime_UTR | 25.0% |
!! | GAAATTTCTGATTTGCATAT+TGG | + | chr2_3:55017345-55017364 | None:intergenic | 25.0% |
!! | AAGTTTTTGGAAGCAAACTA+AGG | + | chr2_3:55016158-55016177 | None:intergenic | 30.0% |
!!! | TGTATGACATTTTAAGTTGG+TGG | - | chr2_3:55016959-55016978 | Msa0299790:intron | 30.0% |
!!! | ATGTTCCATTTTTTGAAGTC+TGG | - | chr2_3:55017047-55017066 | Msa0299790:five_prime_UTR | 30.0% |
! | CAGTTTTACCTTTCAAATTC+AGG | - | chr2_3:55017088-55017107 | Msa0299790:five_prime_UTR | 30.0% |
TTGCACATTTGCTTACAATA+TGG | - | chr2_3:55017558-55017577 | Msa0299790:five_prime_UTR | 30.0% | |
!! | AAGTTTTTGGAAGCAAACTA+AGG | + | chr2_3:55016158-55016177 | None:intergenic | 30.0% |
!!! | TGTATGACATTTTAAGTTGG+TGG | - | chr2_3:55016959-55016978 | Msa0299790:intron | 30.0% |
!!! | ATGTTCCATTTTTTGAAGTC+TGG | - | chr2_3:55017047-55017066 | Msa0299790:five_prime_UTR | 30.0% |
! | CAGTTTTACCTTTCAAATTC+AGG | - | chr2_3:55017088-55017107 | Msa0299790:five_prime_UTR | 30.0% |
TTGCACATTTGCTTACAATA+TGG | - | chr2_3:55017558-55017577 | Msa0299790:five_prime_UTR | 30.0% | |
AGAATTGTATAATTGGGGTG+GGG | + | chr2_3:55015893-55015912 | None:intergenic | 35.0% | |
CAGAATTGTATAATTGGGGT+GGG | + | chr2_3:55015894-55015913 | None:intergenic | 35.0% | |
TCAGAATTGTATAATTGGGG+TGG | + | chr2_3:55015895-55015914 | None:intergenic | 35.0% | |
ATGTATTCTGCTGCCAATTA+AGG | - | chr2_3:55015970-55015989 | Msa0299790:CDS | 35.0% | |
GAAAGTTAGTTGTGTGATGA+AGG | + | chr2_3:55016022-55016041 | None:intergenic | 35.0% | |
CTTACATAGCTAAGAAGTGA+TGG | + | chr2_3:55016062-55016081 | None:intergenic | 35.0% | |
!!! | AATTTTGGTTCCAACACAAG+AGG | - | chr2_3:55016238-55016257 | Msa0299790:CDS | 35.0% |
AAGAGGTAACTTGGACATAA+AGG | - | chr2_3:55016255-55016274 | Msa0299790:CDS | 35.0% | |
TCTGAAAGAGATCAAAACTC+TGG | - | chr2_3:55016587-55016606 | Msa0299790:intron | 35.0% | |
TTAGAGGGGACAAATTATAC+TGG | - | chr2_3:55017019-55017038 | Msa0299790:intron | 35.0% | |
TAGCTCCAGACTTCAAAAAA+TGG | + | chr2_3:55017055-55017074 | None:intergenic | 35.0% | |
!!! | TTTTTGAAGTCTGGAGCTAA+TGG | - | chr2_3:55017056-55017075 | Msa0299790:five_prime_UTR | 35.0% |
ATATGGTGCCTGAATTTGAA+AGG | + | chr2_3:55017099-55017118 | None:intergenic | 35.0% | |
TTTGTGGTCATCTCTATTGT+TGG | - | chr2_3:55017259-55017278 | Msa0299790:five_prime_UTR | 35.0% | |
!! | GTTGGCCTTGTATTTACAAA+TGG | - | chr2_3:55017277-55017296 | Msa0299790:five_prime_UTR | 35.0% |
!! | AATGGATTAATAGCACCTCA+TGG | - | chr2_3:55017295-55017314 | Msa0299790:five_prime_UTR | 35.0% |
! | ATGGATTAATAGCACCTCAT+GGG | - | chr2_3:55017296-55017315 | Msa0299790:five_prime_UTR | 35.0% |
TTTCTCATTATGTTCCCATG+AGG | + | chr2_3:55017313-55017332 | None:intergenic | 35.0% | |
GATTTGCATATTGGACATTC+TGG | + | chr2_3:55017336-55017355 | None:intergenic | 35.0% | |
TCAACACTTGTTCCACTATA+TGG | - | chr2_3:55017369-55017388 | Msa0299790:five_prime_UTR | 35.0% | |
TCCGGAAATCAAGCTTATAT+GGG | + | chr2_3:55017584-55017603 | None:intergenic | 35.0% | |
TTCCGGAAATCAAGCTTATA+TGG | + | chr2_3:55017585-55017604 | None:intergenic | 35.0% | |
CGCTTTAGCATGTATTGAAT+CGG | - | chr2_3:55017645-55017664 | Msa0299790:five_prime_UTR | 35.0% | |
AGAATTGTATAATTGGGGTG+GGG | + | chr2_3:55015893-55015912 | None:intergenic | 35.0% | |
CAGAATTGTATAATTGGGGT+GGG | + | chr2_3:55015894-55015913 | None:intergenic | 35.0% | |
TCAGAATTGTATAATTGGGG+TGG | + | chr2_3:55015895-55015914 | None:intergenic | 35.0% | |
ATGTATTCTGCTGCCAATTA+AGG | - | chr2_3:55015970-55015989 | Msa0299790:CDS | 35.0% | |
GAAAGTTAGTTGTGTGATGA+AGG | + | chr2_3:55016022-55016041 | None:intergenic | 35.0% | |
CTTACATAGCTAAGAAGTGA+TGG | + | chr2_3:55016062-55016081 | None:intergenic | 35.0% | |
!!! | AATTTTGGTTCCAACACAAG+AGG | - | chr2_3:55016238-55016257 | Msa0299790:CDS | 35.0% |
AAGAGGTAACTTGGACATAA+AGG | - | chr2_3:55016255-55016274 | Msa0299790:CDS | 35.0% | |
TCTGAAAGAGATCAAAACTC+TGG | - | chr2_3:55016587-55016606 | Msa0299790:intron | 35.0% | |
TTAGAGGGGACAAATTATAC+TGG | - | chr2_3:55017019-55017038 | Msa0299790:intron | 35.0% | |
TAGCTCCAGACTTCAAAAAA+TGG | + | chr2_3:55017055-55017074 | None:intergenic | 35.0% | |
!!! | TTTTTGAAGTCTGGAGCTAA+TGG | - | chr2_3:55017056-55017075 | Msa0299790:five_prime_UTR | 35.0% |
ATATGGTGCCTGAATTTGAA+AGG | + | chr2_3:55017099-55017118 | None:intergenic | 35.0% | |
TTTGTGGTCATCTCTATTGT+TGG | - | chr2_3:55017259-55017278 | Msa0299790:five_prime_UTR | 35.0% | |
!! | GTTGGCCTTGTATTTACAAA+TGG | - | chr2_3:55017277-55017296 | Msa0299790:five_prime_UTR | 35.0% |
!! | AATGGATTAATAGCACCTCA+TGG | - | chr2_3:55017295-55017314 | Msa0299790:five_prime_UTR | 35.0% |
! | ATGGATTAATAGCACCTCAT+GGG | - | chr2_3:55017296-55017315 | Msa0299790:five_prime_UTR | 35.0% |
TTTCTCATTATGTTCCCATG+AGG | + | chr2_3:55017313-55017332 | None:intergenic | 35.0% | |
GATTTGCATATTGGACATTC+TGG | + | chr2_3:55017336-55017355 | None:intergenic | 35.0% | |
TCAACACTTGTTCCACTATA+TGG | - | chr2_3:55017369-55017388 | Msa0299790:five_prime_UTR | 35.0% | |
TCCGGAAATCAAGCTTATAT+GGG | + | chr2_3:55017584-55017603 | None:intergenic | 35.0% | |
TTCCGGAAATCAAGCTTATA+TGG | + | chr2_3:55017585-55017604 | None:intergenic | 35.0% | |
AATTGTATAATTGGGGTGGG+GGG | + | chr2_3:55015891-55015910 | None:intergenic | 40.0% | |
GAATTGTATAATTGGGGTGG+GGG | + | chr2_3:55015892-55015911 | None:intergenic | 40.0% | |
TTCCAACACAAGAGGTAACT+TGG | - | chr2_3:55016246-55016265 | Msa0299790:CDS | 40.0% | |
TGTCCATTAGCACTAGCATA+TGG | + | chr2_3:55017116-55017135 | None:intergenic | 40.0% | |
! | TAATGGACATTCTGTCGAAC+CGG | - | chr2_3:55017127-55017146 | Msa0299790:five_prime_UTR | 40.0% |
! | GAAACCACATCAAGTTCTGA+AGG | - | chr2_3:55017399-55017418 | Msa0299790:five_prime_UTR | 40.0% |
GTTGCAGTATCAAGTGATCT+TGG | + | chr2_3:55017471-55017490 | None:intergenic | 40.0% | |
GCCCATATAAGCTTGATTTC+CGG | - | chr2_3:55017580-55017599 | Msa0299790:five_prime_UTR | 40.0% | |
AATTGTATAATTGGGGTGGG+GGG | + | chr2_3:55015891-55015910 | None:intergenic | 40.0% | |
GAATTGTATAATTGGGGTGG+GGG | + | chr2_3:55015892-55015911 | None:intergenic | 40.0% | |
TTCCAACACAAGAGGTAACT+TGG | - | chr2_3:55016246-55016265 | Msa0299790:CDS | 40.0% | |
TGTCCATTAGCACTAGCATA+TGG | + | chr2_3:55017116-55017135 | None:intergenic | 40.0% | |
! | TAATGGACATTCTGTCGAAC+CGG | - | chr2_3:55017127-55017146 | Msa0299790:five_prime_UTR | 40.0% |
! | GAAACCACATCAAGTTCTGA+AGG | - | chr2_3:55017399-55017418 | Msa0299790:five_prime_UTR | 40.0% |
GTTGCAGTATCAAGTGATCT+TGG | + | chr2_3:55017471-55017490 | None:intergenic | 40.0% | |
GCCCATATAAGCTTGATTTC+CGG | - | chr2_3:55017580-55017599 | Msa0299790:five_prime_UTR | 40.0% | |
ATTGTATAATTGGGGTGGGG+GGG | + | chr2_3:55015890-55015909 | None:intergenic | 45.0% | |
! | AGTGATGGTGATGATGTGCA+GGG | + | chr2_3:55016047-55016066 | None:intergenic | 45.0% |
! | AAGTGATGGTGATGATGTGC+AGG | + | chr2_3:55016048-55016067 | None:intergenic | 45.0% |
GTCCAAGTTACCTCTTGTGT+TGG | + | chr2_3:55016251-55016270 | None:intergenic | 45.0% | |
GCACCATATGCTAGTGCTAA+TGG | - | chr2_3:55017110-55017129 | Msa0299790:five_prime_UTR | 45.0% | |
AATGGACATTCTGTCGAACC+GGG | - | chr2_3:55017128-55017147 | Msa0299790:five_prime_UTR | 45.0% | |
GATCCAGTGGTAACACTTTG+TGG | - | chr2_3:55017243-55017262 | Msa0299790:five_prime_UTR | 45.0% | |
! | TGACCACAAAGTGTTACCAC+TGG | + | chr2_3:55017249-55017268 | None:intergenic | 45.0% |
CTTGTTCCACTATATGGTCG+TGG | - | chr2_3:55017375-55017394 | Msa0299790:five_prime_UTR | 45.0% | |
GTTTCACCACGACCATATAG+TGG | + | chr2_3:55017384-55017403 | None:intergenic | 45.0% | |
CTCACCTTCAGAACTTGATG+TGG | + | chr2_3:55017406-55017425 | None:intergenic | 45.0% | |
!! | CACATCAAGTTCTGAAGGTG+AGG | - | chr2_3:55017404-55017423 | Msa0299790:five_prime_UTR | 45.0% |
AAGGTGAGGCTCATCAAGAT+GGG | - | chr2_3:55017418-55017437 | Msa0299790:five_prime_UTR | 45.0% | |
TCAAGTGATCTTGGACCAAG+TGG | + | chr2_3:55017462-55017481 | None:intergenic | 45.0% | |
!! | GCTTCTGCTTGTTCTAGTTC+AGG | + | chr2_3:55017504-55017523 | None:intergenic | 45.0% |
ATTGTATAATTGGGGTGGGG+GGG | + | chr2_3:55015890-55015909 | None:intergenic | 45.0% | |
! | AGTGATGGTGATGATGTGCA+GGG | + | chr2_3:55016047-55016066 | None:intergenic | 45.0% |
! | AAGTGATGGTGATGATGTGC+AGG | + | chr2_3:55016048-55016067 | None:intergenic | 45.0% |
GTCCAAGTTACCTCTTGTGT+TGG | + | chr2_3:55016251-55016270 | None:intergenic | 45.0% | |
GCACCATATGCTAGTGCTAA+TGG | - | chr2_3:55017110-55017129 | Msa0299790:five_prime_UTR | 45.0% | |
AATGGACATTCTGTCGAACC+GGG | - | chr2_3:55017128-55017147 | Msa0299790:five_prime_UTR | 45.0% | |
GATCCAGTGGTAACACTTTG+TGG | - | chr2_3:55017243-55017262 | Msa0299790:five_prime_UTR | 45.0% | |
! | TGACCACAAAGTGTTACCAC+TGG | + | chr2_3:55017249-55017268 | None:intergenic | 45.0% |
CTTGTTCCACTATATGGTCG+TGG | - | chr2_3:55017375-55017394 | Msa0299790:five_prime_UTR | 45.0% | |
GTTTCACCACGACCATATAG+TGG | + | chr2_3:55017384-55017403 | None:intergenic | 45.0% | |
CTCACCTTCAGAACTTGATG+TGG | + | chr2_3:55017406-55017425 | None:intergenic | 45.0% | |
!! | CACATCAAGTTCTGAAGGTG+AGG | - | chr2_3:55017404-55017423 | Msa0299790:five_prime_UTR | 45.0% |
AAGGTGAGGCTCATCAAGAT+GGG | - | chr2_3:55017418-55017437 | Msa0299790:five_prime_UTR | 45.0% | |
TCAAGTGATCTTGGACCAAG+TGG | + | chr2_3:55017462-55017481 | None:intergenic | 45.0% | |
!! | GCTTCTGCTTGTTCTAGTTC+AGG | + | chr2_3:55017504-55017523 | None:intergenic | 45.0% |
!!! | TAAAAATAAAGATTAAATTT+TGG | - | chr2_3:55016223-55016242 | Msa0299790:CDS | 5.0% |
!!! | TAAAAATAAAGATTAAATTT+TGG | - | chr2_3:55016223-55016242 | Msa0299790:CDS | 5.0% |
! | CCGTGCTGTTACAAGCTGAA+GGG | + | chr2_3:55016506-55016525 | None:intergenic | 50.0% |
CCCTTCAGCTTGTAACAGCA+CGG | - | chr2_3:55016503-55016522 | Msa0299790:intron | 50.0% | |
! | ACCGTGCTGTTACAAGCTGA+AGG | + | chr2_3:55016507-55016526 | None:intergenic | 50.0% |
ATGGACATTCTGTCGAACCG+GGG | - | chr2_3:55017129-55017148 | Msa0299790:five_prime_UTR | 50.0% | |
CATTAGCATCAGCTTTGCCC+CGG | + | chr2_3:55017149-55017168 | None:intergenic | 50.0% | |
GGAGCATGTGAAAGATCCAG+TGG | - | chr2_3:55017230-55017249 | Msa0299790:five_prime_UTR | 50.0% | |
GAAGGTGAGGCTCATCAAGA+TGG | - | chr2_3:55017417-55017436 | Msa0299790:five_prime_UTR | 50.0% | |
GTTGTACCACCAAGACCACT+TGG | - | chr2_3:55017444-55017463 | Msa0299790:five_prime_UTR | 50.0% | |
GATCTTGGACCAAGTGGTCT+TGG | + | chr2_3:55017456-55017475 | None:intergenic | 50.0% | |
AAACTACTCTCCTGTGCTGG+TGG | + | chr2_3:55017540-55017559 | None:intergenic | 50.0% | |
TGCAAACTACTCTCCTGTGC+TGG | + | chr2_3:55017543-55017562 | None:intergenic | 50.0% | |
! | CCGTGCTGTTACAAGCTGAA+GGG | + | chr2_3:55016506-55016525 | None:intergenic | 50.0% |
CCCTTCAGCTTGTAACAGCA+CGG | - | chr2_3:55016503-55016522 | Msa0299790:intron | 50.0% | |
! | ACCGTGCTGTTACAAGCTGA+AGG | + | chr2_3:55016507-55016526 | None:intergenic | 50.0% |
ATGGACATTCTGTCGAACCG+GGG | - | chr2_3:55017129-55017148 | Msa0299790:five_prime_UTR | 50.0% | |
CATTAGCATCAGCTTTGCCC+CGG | + | chr2_3:55017149-55017168 | None:intergenic | 50.0% | |
GGAGCATGTGAAAGATCCAG+TGG | - | chr2_3:55017230-55017249 | Msa0299790:five_prime_UTR | 50.0% | |
GAAGGTGAGGCTCATCAAGA+TGG | - | chr2_3:55017417-55017436 | Msa0299790:five_prime_UTR | 50.0% | |
GTTGTACCACCAAGACCACT+TGG | - | chr2_3:55017444-55017463 | Msa0299790:five_prime_UTR | 50.0% | |
GATCTTGGACCAAGTGGTCT+TGG | + | chr2_3:55017456-55017475 | None:intergenic | 50.0% | |
AAACTACTCTCCTGTGCTGG+TGG | + | chr2_3:55017540-55017559 | None:intergenic | 50.0% | |
TGCAAACTACTCTCCTGTGC+TGG | + | chr2_3:55017543-55017562 | None:intergenic | 50.0% | |
! | CTTGGACCAAGTGGTCTTGG+TGG | + | chr2_3:55017453-55017472 | None:intergenic | 55.0% |
! | CTTGGACCAAGTGGTCTTGG+TGG | + | chr2_3:55017453-55017472 | None:intergenic | 55.0% |
!! | AGCAGAAGCACCACCAGCAC+AGG | - | chr2_3:55017527-55017546 | Msa0299790:five_prime_UTR | 60.0% |
!! | AGCAGAAGCACCACCAGCAC+AGG | - | chr2_3:55017527-55017546 | Msa0299790:five_prime_UTR | 60.0% |
TTGGGGTGGGGGGGTGAAGC+AGG | + | chr2_3:55015881-55015900 | None:intergenic | 70.0% | |
TTGGGGTGGGGGGGTGAAGC+AGG | + | chr2_3:55015881-55015900 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 55015878 | 55017667 | 55015878 | ID=Msa0299790;Name=Msa0299790 |
chr2_3 | mRNA | 55015878 | 55017667 | 55015878 | ID=Msa0299790-mRNA-1;Parent=Msa0299790;Name=Msa0299790-mRNA-1;_AED=0.15;_eAED=0.15;_QI=654|1|1|1|1|1|2|53|165 |
chr2_3 | exon | 55015878 | 55016435 | 55015878 | ID=Msa0299790-mRNA-1:exon:17539;Parent=Msa0299790-mRNA-1 |
chr2_3 | exon | 55017021 | 55017667 | 55017021 | ID=Msa0299790-mRNA-1:exon:17538;Parent=Msa0299790-mRNA-1 |
chr2_3 | five_prime_UTR | 55017021 | 55017667 | 55017021 | ID=Msa0299790-mRNA-1:five_prime_utr;Parent=Msa0299790-mRNA-1 |
chr2_3 | five_prime_UTR | 55016429 | 55016435 | 55016429 | ID=Msa0299790-mRNA-1:five_prime_utr;Parent=Msa0299790-mRNA-1 |
chr2_3 | CDS | 55015931 | 55016428 | 55015931 | ID=Msa0299790-mRNA-1:cds;Parent=Msa0299790-mRNA-1 |
chr2_3 | three_prime_UTR | 55015878 | 55015930 | 55015878 | ID=Msa0299790-mRNA-1:three_prime_utr;Parent=Msa0299790-mRNA-1 |
Gene Sequence |
Protein sequence |