AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0299790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299790 MtrunA17_Chr2g0324291 96.364 165 4 1 1 165 1 163 6.77e-117 327
Msa0299790 MtrunA17_Chr4g0021321 58.475 118 45 1 22 135 34 151 2.35e-46 151
Msa0299790 MtrunA17_Chr2g0324261 64.545 110 29 2 29 128 37 146 6.09e-45 148
Msa0299790 MtrunA17_Chr2g0324281 60.465 129 31 4 17 135 3 121 7.52e-45 146
Msa0299790 MtrunA17_Chr2g0282171 46.715 137 63 4 2 133 1 132 3.57e-33 117
Msa0299790 MtrunA17_Chr8g0360011 59.551 89 34 1 29 115 32 120 1.65e-32 116
Msa0299790 MtrunA17_Chr4g0047371 43.165 139 70 5 6 137 7 143 1.88e-31 112
Msa0299790 MtrunA17_Chr4g0047381 45.690 116 55 3 6 115 7 120 3.49e-29 107
Msa0299790 MtrunA17_Chr5g0403521 48.889 90 41 2 30 119 33 117 1.79e-28 105
Msa0299790 MtrunA17_Chr1g0154561 48.352 91 42 2 29 119 29 114 1.23e-27 103
Msa0299790 MtrunA17_Chr1g0175871 37.190 121 63 5 3 115 28 143 1.48e-23 91.7
Msa0299790 MtrunA17_Chr1g0175571 35.294 136 72 5 2 128 86 214 1.39e-22 89.7
Msa0299790 MtrunA17_Chr7g0258821 43.182 88 43 2 32 119 170 250 2.05e-22 92.4
Msa0299790 MtrunA17_Chr1g0175641 42.857 84 44 2 32 115 76 155 2.82e-21 85.5
Msa0299790 MtrunA17_Chr2g0308681 38.889 90 51 1 30 119 105 190 2.03e-19 81.6
Msa0299790 MtrunA17_Chr1g0150921 36.986 73 39 1 19 91 351 416 1.50e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299790 AT4G03510.3 54.545 99 36 2 24 118 38 131 3.10e-33 118
Msa0299790 AT4G03510.1 54.545 99 36 2 24 118 38 131 3.10e-33 118
Msa0299790 AT4G03510.2 54.545 99 36 2 24 118 38 131 3.10e-33 118
Msa0299790 AT4G03510.4 54.545 99 36 2 24 118 38 131 3.10e-33 118
Msa0299790 AT4G28270.1 48.305 118 43 5 29 137 16 124 5.12e-32 113
Msa0299790 AT1G74990.1 46.667 105 47 3 29 133 14 109 5.53e-29 104
Msa0299790 AT2G23780.3 46.465 99 47 3 21 119 16 108 2.13e-27 102
Msa0299790 AT2G23780.2 46.465 99 47 3 21 119 16 108 2.13e-27 102
Msa0299790 AT2G23780.1 46.465 99 47 3 21 119 16 108 2.13e-27 102
Msa0299790 AT1G19310.1 51.136 88 38 2 32 119 21 103 1.20e-26 100
Msa0299790 AT4G27470.1 48.598 107 46 5 32 131 42 146 2.51e-26 100
Msa0299790 AT3G58030.4 46.341 82 34 2 13 94 123 194 4.91e-22 91.7
Msa0299790 AT3G58030.2 46.341 82 34 2 13 94 123 194 4.91e-22 91.7
Msa0299790 AT3G58030.1 46.341 82 34 2 13 94 123 194 4.91e-22 91.7
Msa0299790 AT3G58030.3 46.341 82 34 2 13 94 123 194 4.91e-22 91.7
Msa0299790 AT2G42030.1 46.067 89 40 2 32 120 139 219 7.61e-22 91.3
Msa0299790 AT2G44410.1 37.500 88 51 1 32 119 123 206 9.34e-18 79.7

Find 61 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGTTATGTTCAAGTTTA+AGG 0.077508 2_3:+55017162 None:intergenic
GCAAATCAGAATTGTATAAT+TGG 0.168253 2_3:+55017626 None:intergenic
TTCCGGAAATCAAGCTTATA+TGG 0.186494 2_3:+55015941 None:intergenic
ATGTATTCTGCTGCCAATTA+AGG 0.216460 2_3:-55017553 Msa0299790:five_prime_UTR
GAAATTTCTGATTTGCATAT+TGG 0.222866 2_3:+55016181 None:intergenic
ATGATATTCAATCAAATTTC+CGG 0.230037 2_3:+55015924 None:intergenic
GATTTGCATATTGGACATTC+TGG 0.274453 2_3:+55016190 None:intergenic
GCTTCTGCTTGTTCTAGTTC+AGG 0.300850 2_3:+55016022 None:intergenic
TTGCACATTTGCTTACAATA+TGG 0.306524 2_3:-55015965 Msa0299790:CDS
GCCCATATAAGCTTGATTTC+CGG 0.309807 2_3:-55015943 Msa0299790:CDS
TCAACACTTGTTCCACTATA+TGG 0.312394 2_3:-55016154 Msa0299790:CDS
CAAATCAGAATTGTATAATT+GGG 0.350457 2_3:+55017627 None:intergenic
GCACCATATGCTAGTGCTAA+TGG 0.364544 2_3:-55016413 Msa0299790:exon
AATTGTATAATTGGGGTGGG+GGG 0.367699 2_3:+55017635 None:intergenic
AGCAGAAGCACCACCAGCAC+AGG 0.376264 2_3:-55015996 Msa0299790:CDS
ATTGTATAATTGGGGTGGGG+GGG 0.397306 2_3:+55017636 None:intergenic
AAGAGGTAACTTGGACATAA+AGG 0.400504 2_3:-55017268 Msa0299790:five_prime_UTR
TTTGTGGTCATCTCTATTGT+TGG 0.402478 2_3:-55016264 Msa0299790:CDS
TAATGGACATTCTGTCGAAC+CGG 0.412747 2_3:-55016396 Msa0299790:CDS
CGCTTTAGCATGTATTGAAT+CGG 0.416757 2_3:-55015878 Msa0299790:three_prime_UTR
TTCCAACACAAGAGGTAACT+TGG 0.424249 2_3:-55017277 Msa0299790:five_prime_UTR
GAATTGTATAATTGGGGTGG+GGG 0.435784 2_3:+55017634 None:intergenic
GTTGGCCTTGTATTTACAAA+TGG 0.435974 2_3:-55016246 Msa0299790:CDS
TCCGGAAATCAAGCTTATAT+GGG 0.455288 2_3:+55015942 None:intergenic
GTTGCAGTATCAAGTGATCT+TGG 0.469495 2_3:+55016055 None:intergenic
GATCCAGTGGTAACACTTTG+TGG 0.471364 2_3:-55016280 Msa0299790:CDS
GAAAGTTAGTTGTGTGATGA+AGG 0.480952 2_3:+55017504 None:intergenic
GATCTTGGACCAAGTGGTCT+TGG 0.481662 2_3:+55016070 None:intergenic
AGAATTGTATAATTGGGGTG+GGG 0.483331 2_3:+55017633 None:intergenic
AAGTGATGGTGATGATGTGC+AGG 0.486214 2_3:+55017478 None:intergenic
GTCCAAGTTACCTCTTGTGT+TGG 0.487804 2_3:+55017275 None:intergenic
GTTTCACCACGACCATATAG+TGG 0.492063 2_3:+55016142 None:intergenic
GAAGGTGAGGCTCATCAAGA+TGG 0.515188 2_3:-55016106 Msa0299790:CDS
AATGGACATTCTGTCGAACC+GGG 0.527440 2_3:-55016395 Msa0299790:CDS
TGTCCATTAGCACTAGCATA+TGG 0.529146 2_3:+55016410 None:intergenic
TTAATCCATTTGTAAATACA+AGG 0.530718 2_3:+55016241 None:intergenic
CAGAATTGTATAATTGGGGT+GGG 0.533357 2_3:+55017632 None:intergenic
CTTGGACCAAGTGGTCTTGG+TGG 0.541843 2_3:+55016073 None:intergenic
CTCACCTTCAGAACTTGATG+TGG 0.546869 2_3:+55016120 None:intergenic
AATGGATTAATAGCACCTCA+TGG 0.547502 2_3:-55016228 Msa0299790:CDS
CATTAGCATCAGCTTTGCCC+CGG 0.566386 2_3:+55016377 None:intergenic
TGCAAACTACTCTCCTGTGC+TGG 0.567244 2_3:+55015983 None:intergenic
AAGGTGAGGCTCATCAAGAT+GGG 0.576426 2_3:-55016105 Msa0299790:CDS
TCAGAATTGTATAATTGGGG+TGG 0.577261 2_3:+55017631 None:intergenic
CACATCAAGTTCTGAAGGTG+AGG 0.577593 2_3:-55016119 Msa0299790:CDS
ACCGTGCTGTTACAAGCTGA+AGG 0.578295 2_3:+55017019 None:intergenic
CTTACATAGCTAAGAAGTGA+TGG 0.578724 2_3:+55017464 None:intergenic
AAACTACTCTCCTGTGCTGG+TGG 0.580631 2_3:+55015986 None:intergenic
GTTGTACCACCAAGACCACT+TGG 0.583553 2_3:-55016079 Msa0299790:CDS
AAATCAGAATTGTATAATTG+GGG 0.592797 2_3:+55017628 None:intergenic
ATGGATTAATAGCACCTCAT+GGG 0.600842 2_3:-55016227 Msa0299790:CDS
TGACCACAAAGTGTTACCAC+TGG 0.610639 2_3:+55016277 None:intergenic
GAAACCACATCAAGTTCTGA+AGG 0.614193 2_3:-55016124 Msa0299790:CDS
CTTGTTCCACTATATGGTCG+TGG 0.622216 2_3:-55016148 Msa0299790:CDS
CCCTTCAGCTTGTAACAGCA+CGG 0.625188 2_3:-55017020 Msa0299790:intron
TTTCTCATTATGTTCCCATG+AGG 0.630818 2_3:+55016213 None:intergenic
CCGTGCTGTTACAAGCTGAA+GGG 0.637119 2_3:+55017020 None:intergenic
TCAAGTGATCTTGGACCAAG+TGG 0.644730 2_3:+55016064 None:intergenic
GGAGCATGTGAAAGATCCAG+TGG 0.680623 2_3:-55016293 Msa0299790:CDS
AGTGATGGTGATGATGTGCA+GGG 0.694895 2_3:+55017479 None:intergenic
ATGGACATTCTGTCGAACCG+GGG 0.697290 2_3:-55016394 Msa0299790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAGAAAATACTAATATTTA+GGG - chr2_3:55016775-55016794 Msa0299790:intron 15.0%
!! AGAGAAAATACTAATATTTA+GGG - chr2_3:55016775-55016794 Msa0299790:intron 15.0%
!! AAATCAGAATTGTATAATTG+GGG + chr2_3:55015898-55015917 None:intergenic 20.0%
!! CAAATCAGAATTGTATAATT+GGG + chr2_3:55015899-55015918 None:intergenic 20.0%
!!! ATTAGTTATGTTCAAGTTTA+AGG + chr2_3:55016364-55016383 None:intergenic 20.0%
!! ATCTCTTTCAGAAAAAATAA+AGG + chr2_3:55016579-55016598 None:intergenic 20.0%
!! ATGAATGAAACTTCATTTAT+TGG - chr2_3:55016638-55016657 Msa0299790:intron 20.0%
!!! AAATCATTCAAAGATTTTGA+AGG - chr2_3:55016685-55016704 Msa0299790:intron 20.0%
!! CAGAGAAAATACTAATATTT+AGG - chr2_3:55016774-55016793 Msa0299790:intron 20.0%
!!! ACTTTTTTTAAGTTTCAAGT+TGG - chr2_3:55016816-55016835 Msa0299790:intron 20.0%
!!! CTTTTTTTAAGTTTCAAGTT+GGG - chr2_3:55016817-55016836 Msa0299790:intron 20.0%
!!! TTATGTATGACATTTTAAGT+TGG - chr2_3:55016956-55016975 Msa0299790:intron 20.0%
!! TGTCATAATTCATACAAATT+AGG + chr2_3:55016995-55017014 None:intergenic 20.0%
!! TTAATCCATTTGTAAATACA+AGG + chr2_3:55017285-55017304 None:intergenic 20.0%
!! ATGATATTCAATCAAATTTC+CGG + chr2_3:55017602-55017621 None:intergenic 20.0%
!! AAATCAGAATTGTATAATTG+GGG + chr2_3:55015898-55015917 None:intergenic 20.0%
!! CAAATCAGAATTGTATAATT+GGG + chr2_3:55015899-55015918 None:intergenic 20.0%
!!! ATTAGTTATGTTCAAGTTTA+AGG + chr2_3:55016364-55016383 None:intergenic 20.0%
!! ATCTCTTTCAGAAAAAATAA+AGG + chr2_3:55016579-55016598 None:intergenic 20.0%
!! ATGAATGAAACTTCATTTAT+TGG - chr2_3:55016638-55016657 Msa0299790:intron 20.0%
!!! AAATCATTCAAAGATTTTGA+AGG - chr2_3:55016685-55016704 Msa0299790:intron 20.0%
!! CAGAGAAAATACTAATATTT+AGG - chr2_3:55016774-55016793 Msa0299790:intron 20.0%
!!! ACTTTTTTTAAGTTTCAAGT+TGG - chr2_3:55016816-55016835 Msa0299790:intron 20.0%
!!! CTTTTTTTAAGTTTCAAGTT+GGG - chr2_3:55016817-55016836 Msa0299790:intron 20.0%
!!! TTATGTATGACATTTTAAGT+TGG - chr2_3:55016956-55016975 Msa0299790:intron 20.0%
!! TGTCATAATTCATACAAATT+AGG + chr2_3:55016995-55017014 None:intergenic 20.0%
!! TTAATCCATTTGTAAATACA+AGG + chr2_3:55017285-55017304 None:intergenic 20.0%
!! ATGATATTCAATCAAATTTC+CGG + chr2_3:55017602-55017621 None:intergenic 20.0%
! GCAAATCAGAATTGTATAAT+TGG + chr2_3:55015900-55015919 None:intergenic 25.0%
! CAAAGTGAAAAATCCTTAAT+TGG + chr2_3:55015986-55016005 None:intergenic 25.0%
!! ATTGTTAACTCGTAAGTTTT+TGG + chr2_3:55016171-55016190 None:intergenic 25.0%
! AAAAACTTACGAGTTAACAA+TGG - chr2_3:55016170-55016189 Msa0299790:CDS 25.0%
!!! GATGCAAGTTTTTTACATAA+AGG - chr2_3:55016304-55016323 Msa0299790:CDS 25.0%
!! TTTTGTTGAAAATGAAGCAA+AGG - chr2_3:55016543-55016562 Msa0299790:intron 25.0%
! TTACAAACAAATTGTACTTG+TGG + chr2_3:55016928-55016947 None:intergenic 25.0%
! TGAATTATGACAAATGTTAG+AGG - chr2_3:55017003-55017022 Msa0299790:intron 25.0%
! GAATTATGACAAATGTTAGA+GGG - chr2_3:55017004-55017023 Msa0299790:intron 25.0%
! AATTATGACAAATGTTAGAG+GGG - chr2_3:55017005-55017024 Msa0299790:intron 25.0%
!! TTTTGAATGCAACATATGTT+TGG - chr2_3:55017209-55017228 Msa0299790:five_prime_UTR 25.0%
!! GAAATTTCTGATTTGCATAT+TGG + chr2_3:55017345-55017364 None:intergenic 25.0%
! GCAAATCAGAATTGTATAAT+TGG + chr2_3:55015900-55015919 None:intergenic 25.0%
! CAAAGTGAAAAATCCTTAAT+TGG + chr2_3:55015986-55016005 None:intergenic 25.0%
!! ATTGTTAACTCGTAAGTTTT+TGG + chr2_3:55016171-55016190 None:intergenic 25.0%
! AAAAACTTACGAGTTAACAA+TGG - chr2_3:55016170-55016189 Msa0299790:CDS 25.0%
!!! GATGCAAGTTTTTTACATAA+AGG - chr2_3:55016304-55016323 Msa0299790:CDS 25.0%
!! TTTTGTTGAAAATGAAGCAA+AGG - chr2_3:55016543-55016562 Msa0299790:intron 25.0%
! TTACAAACAAATTGTACTTG+TGG + chr2_3:55016928-55016947 None:intergenic 25.0%
! TGAATTATGACAAATGTTAG+AGG - chr2_3:55017003-55017022 Msa0299790:intron 25.0%
! GAATTATGACAAATGTTAGA+GGG - chr2_3:55017004-55017023 Msa0299790:intron 25.0%
! AATTATGACAAATGTTAGAG+GGG - chr2_3:55017005-55017024 Msa0299790:intron 25.0%
!! TTTTGAATGCAACATATGTT+TGG - chr2_3:55017209-55017228 Msa0299790:five_prime_UTR 25.0%
!! GAAATTTCTGATTTGCATAT+TGG + chr2_3:55017345-55017364 None:intergenic 25.0%
!! AAGTTTTTGGAAGCAAACTA+AGG + chr2_3:55016158-55016177 None:intergenic 30.0%
!!! TGTATGACATTTTAAGTTGG+TGG - chr2_3:55016959-55016978 Msa0299790:intron 30.0%
!!! ATGTTCCATTTTTTGAAGTC+TGG - chr2_3:55017047-55017066 Msa0299790:five_prime_UTR 30.0%
! CAGTTTTACCTTTCAAATTC+AGG - chr2_3:55017088-55017107 Msa0299790:five_prime_UTR 30.0%
TTGCACATTTGCTTACAATA+TGG - chr2_3:55017558-55017577 Msa0299790:five_prime_UTR 30.0%
!! AAGTTTTTGGAAGCAAACTA+AGG + chr2_3:55016158-55016177 None:intergenic 30.0%
!!! TGTATGACATTTTAAGTTGG+TGG - chr2_3:55016959-55016978 Msa0299790:intron 30.0%
!!! ATGTTCCATTTTTTGAAGTC+TGG - chr2_3:55017047-55017066 Msa0299790:five_prime_UTR 30.0%
! CAGTTTTACCTTTCAAATTC+AGG - chr2_3:55017088-55017107 Msa0299790:five_prime_UTR 30.0%
TTGCACATTTGCTTACAATA+TGG - chr2_3:55017558-55017577 Msa0299790:five_prime_UTR 30.0%
AGAATTGTATAATTGGGGTG+GGG + chr2_3:55015893-55015912 None:intergenic 35.0%
CAGAATTGTATAATTGGGGT+GGG + chr2_3:55015894-55015913 None:intergenic 35.0%
TCAGAATTGTATAATTGGGG+TGG + chr2_3:55015895-55015914 None:intergenic 35.0%
ATGTATTCTGCTGCCAATTA+AGG - chr2_3:55015970-55015989 Msa0299790:CDS 35.0%
GAAAGTTAGTTGTGTGATGA+AGG + chr2_3:55016022-55016041 None:intergenic 35.0%
CTTACATAGCTAAGAAGTGA+TGG + chr2_3:55016062-55016081 None:intergenic 35.0%
!!! AATTTTGGTTCCAACACAAG+AGG - chr2_3:55016238-55016257 Msa0299790:CDS 35.0%
AAGAGGTAACTTGGACATAA+AGG - chr2_3:55016255-55016274 Msa0299790:CDS 35.0%
TCTGAAAGAGATCAAAACTC+TGG - chr2_3:55016587-55016606 Msa0299790:intron 35.0%
TTAGAGGGGACAAATTATAC+TGG - chr2_3:55017019-55017038 Msa0299790:intron 35.0%
TAGCTCCAGACTTCAAAAAA+TGG + chr2_3:55017055-55017074 None:intergenic 35.0%
!!! TTTTTGAAGTCTGGAGCTAA+TGG - chr2_3:55017056-55017075 Msa0299790:five_prime_UTR 35.0%
ATATGGTGCCTGAATTTGAA+AGG + chr2_3:55017099-55017118 None:intergenic 35.0%
TTTGTGGTCATCTCTATTGT+TGG - chr2_3:55017259-55017278 Msa0299790:five_prime_UTR 35.0%
!! GTTGGCCTTGTATTTACAAA+TGG - chr2_3:55017277-55017296 Msa0299790:five_prime_UTR 35.0%
!! AATGGATTAATAGCACCTCA+TGG - chr2_3:55017295-55017314 Msa0299790:five_prime_UTR 35.0%
! ATGGATTAATAGCACCTCAT+GGG - chr2_3:55017296-55017315 Msa0299790:five_prime_UTR 35.0%
TTTCTCATTATGTTCCCATG+AGG + chr2_3:55017313-55017332 None:intergenic 35.0%
GATTTGCATATTGGACATTC+TGG + chr2_3:55017336-55017355 None:intergenic 35.0%
TCAACACTTGTTCCACTATA+TGG - chr2_3:55017369-55017388 Msa0299790:five_prime_UTR 35.0%
TCCGGAAATCAAGCTTATAT+GGG + chr2_3:55017584-55017603 None:intergenic 35.0%
TTCCGGAAATCAAGCTTATA+TGG + chr2_3:55017585-55017604 None:intergenic 35.0%
CGCTTTAGCATGTATTGAAT+CGG - chr2_3:55017645-55017664 Msa0299790:five_prime_UTR 35.0%
AGAATTGTATAATTGGGGTG+GGG + chr2_3:55015893-55015912 None:intergenic 35.0%
CAGAATTGTATAATTGGGGT+GGG + chr2_3:55015894-55015913 None:intergenic 35.0%
TCAGAATTGTATAATTGGGG+TGG + chr2_3:55015895-55015914 None:intergenic 35.0%
ATGTATTCTGCTGCCAATTA+AGG - chr2_3:55015970-55015989 Msa0299790:CDS 35.0%
GAAAGTTAGTTGTGTGATGA+AGG + chr2_3:55016022-55016041 None:intergenic 35.0%
CTTACATAGCTAAGAAGTGA+TGG + chr2_3:55016062-55016081 None:intergenic 35.0%
!!! AATTTTGGTTCCAACACAAG+AGG - chr2_3:55016238-55016257 Msa0299790:CDS 35.0%
AAGAGGTAACTTGGACATAA+AGG - chr2_3:55016255-55016274 Msa0299790:CDS 35.0%
TCTGAAAGAGATCAAAACTC+TGG - chr2_3:55016587-55016606 Msa0299790:intron 35.0%
TTAGAGGGGACAAATTATAC+TGG - chr2_3:55017019-55017038 Msa0299790:intron 35.0%
TAGCTCCAGACTTCAAAAAA+TGG + chr2_3:55017055-55017074 None:intergenic 35.0%
!!! TTTTTGAAGTCTGGAGCTAA+TGG - chr2_3:55017056-55017075 Msa0299790:five_prime_UTR 35.0%
ATATGGTGCCTGAATTTGAA+AGG + chr2_3:55017099-55017118 None:intergenic 35.0%
TTTGTGGTCATCTCTATTGT+TGG - chr2_3:55017259-55017278 Msa0299790:five_prime_UTR 35.0%
!! GTTGGCCTTGTATTTACAAA+TGG - chr2_3:55017277-55017296 Msa0299790:five_prime_UTR 35.0%
!! AATGGATTAATAGCACCTCA+TGG - chr2_3:55017295-55017314 Msa0299790:five_prime_UTR 35.0%
! ATGGATTAATAGCACCTCAT+GGG - chr2_3:55017296-55017315 Msa0299790:five_prime_UTR 35.0%
TTTCTCATTATGTTCCCATG+AGG + chr2_3:55017313-55017332 None:intergenic 35.0%
GATTTGCATATTGGACATTC+TGG + chr2_3:55017336-55017355 None:intergenic 35.0%
TCAACACTTGTTCCACTATA+TGG - chr2_3:55017369-55017388 Msa0299790:five_prime_UTR 35.0%
TCCGGAAATCAAGCTTATAT+GGG + chr2_3:55017584-55017603 None:intergenic 35.0%
TTCCGGAAATCAAGCTTATA+TGG + chr2_3:55017585-55017604 None:intergenic 35.0%
AATTGTATAATTGGGGTGGG+GGG + chr2_3:55015891-55015910 None:intergenic 40.0%
GAATTGTATAATTGGGGTGG+GGG + chr2_3:55015892-55015911 None:intergenic 40.0%
TTCCAACACAAGAGGTAACT+TGG - chr2_3:55016246-55016265 Msa0299790:CDS 40.0%
TGTCCATTAGCACTAGCATA+TGG + chr2_3:55017116-55017135 None:intergenic 40.0%
! TAATGGACATTCTGTCGAAC+CGG - chr2_3:55017127-55017146 Msa0299790:five_prime_UTR 40.0%
! GAAACCACATCAAGTTCTGA+AGG - chr2_3:55017399-55017418 Msa0299790:five_prime_UTR 40.0%
GTTGCAGTATCAAGTGATCT+TGG + chr2_3:55017471-55017490 None:intergenic 40.0%
GCCCATATAAGCTTGATTTC+CGG - chr2_3:55017580-55017599 Msa0299790:five_prime_UTR 40.0%
AATTGTATAATTGGGGTGGG+GGG + chr2_3:55015891-55015910 None:intergenic 40.0%
GAATTGTATAATTGGGGTGG+GGG + chr2_3:55015892-55015911 None:intergenic 40.0%
TTCCAACACAAGAGGTAACT+TGG - chr2_3:55016246-55016265 Msa0299790:CDS 40.0%
TGTCCATTAGCACTAGCATA+TGG + chr2_3:55017116-55017135 None:intergenic 40.0%
! TAATGGACATTCTGTCGAAC+CGG - chr2_3:55017127-55017146 Msa0299790:five_prime_UTR 40.0%
! GAAACCACATCAAGTTCTGA+AGG - chr2_3:55017399-55017418 Msa0299790:five_prime_UTR 40.0%
GTTGCAGTATCAAGTGATCT+TGG + chr2_3:55017471-55017490 None:intergenic 40.0%
GCCCATATAAGCTTGATTTC+CGG - chr2_3:55017580-55017599 Msa0299790:five_prime_UTR 40.0%
ATTGTATAATTGGGGTGGGG+GGG + chr2_3:55015890-55015909 None:intergenic 45.0%
! AGTGATGGTGATGATGTGCA+GGG + chr2_3:55016047-55016066 None:intergenic 45.0%
! AAGTGATGGTGATGATGTGC+AGG + chr2_3:55016048-55016067 None:intergenic 45.0%
GTCCAAGTTACCTCTTGTGT+TGG + chr2_3:55016251-55016270 None:intergenic 45.0%
GCACCATATGCTAGTGCTAA+TGG - chr2_3:55017110-55017129 Msa0299790:five_prime_UTR 45.0%
AATGGACATTCTGTCGAACC+GGG - chr2_3:55017128-55017147 Msa0299790:five_prime_UTR 45.0%
GATCCAGTGGTAACACTTTG+TGG - chr2_3:55017243-55017262 Msa0299790:five_prime_UTR 45.0%
! TGACCACAAAGTGTTACCAC+TGG + chr2_3:55017249-55017268 None:intergenic 45.0%
CTTGTTCCACTATATGGTCG+TGG - chr2_3:55017375-55017394 Msa0299790:five_prime_UTR 45.0%
GTTTCACCACGACCATATAG+TGG + chr2_3:55017384-55017403 None:intergenic 45.0%
CTCACCTTCAGAACTTGATG+TGG + chr2_3:55017406-55017425 None:intergenic 45.0%
!! CACATCAAGTTCTGAAGGTG+AGG - chr2_3:55017404-55017423 Msa0299790:five_prime_UTR 45.0%
AAGGTGAGGCTCATCAAGAT+GGG - chr2_3:55017418-55017437 Msa0299790:five_prime_UTR 45.0%
TCAAGTGATCTTGGACCAAG+TGG + chr2_3:55017462-55017481 None:intergenic 45.0%
!! GCTTCTGCTTGTTCTAGTTC+AGG + chr2_3:55017504-55017523 None:intergenic 45.0%
ATTGTATAATTGGGGTGGGG+GGG + chr2_3:55015890-55015909 None:intergenic 45.0%
! AGTGATGGTGATGATGTGCA+GGG + chr2_3:55016047-55016066 None:intergenic 45.0%
! AAGTGATGGTGATGATGTGC+AGG + chr2_3:55016048-55016067 None:intergenic 45.0%
GTCCAAGTTACCTCTTGTGT+TGG + chr2_3:55016251-55016270 None:intergenic 45.0%
GCACCATATGCTAGTGCTAA+TGG - chr2_3:55017110-55017129 Msa0299790:five_prime_UTR 45.0%
AATGGACATTCTGTCGAACC+GGG - chr2_3:55017128-55017147 Msa0299790:five_prime_UTR 45.0%
GATCCAGTGGTAACACTTTG+TGG - chr2_3:55017243-55017262 Msa0299790:five_prime_UTR 45.0%
! TGACCACAAAGTGTTACCAC+TGG + chr2_3:55017249-55017268 None:intergenic 45.0%
CTTGTTCCACTATATGGTCG+TGG - chr2_3:55017375-55017394 Msa0299790:five_prime_UTR 45.0%
GTTTCACCACGACCATATAG+TGG + chr2_3:55017384-55017403 None:intergenic 45.0%
CTCACCTTCAGAACTTGATG+TGG + chr2_3:55017406-55017425 None:intergenic 45.0%
!! CACATCAAGTTCTGAAGGTG+AGG - chr2_3:55017404-55017423 Msa0299790:five_prime_UTR 45.0%
AAGGTGAGGCTCATCAAGAT+GGG - chr2_3:55017418-55017437 Msa0299790:five_prime_UTR 45.0%
TCAAGTGATCTTGGACCAAG+TGG + chr2_3:55017462-55017481 None:intergenic 45.0%
!! GCTTCTGCTTGTTCTAGTTC+AGG + chr2_3:55017504-55017523 None:intergenic 45.0%
!!! TAAAAATAAAGATTAAATTT+TGG - chr2_3:55016223-55016242 Msa0299790:CDS 5.0%
!!! TAAAAATAAAGATTAAATTT+TGG - chr2_3:55016223-55016242 Msa0299790:CDS 5.0%
! CCGTGCTGTTACAAGCTGAA+GGG + chr2_3:55016506-55016525 None:intergenic 50.0%
CCCTTCAGCTTGTAACAGCA+CGG - chr2_3:55016503-55016522 Msa0299790:intron 50.0%
! ACCGTGCTGTTACAAGCTGA+AGG + chr2_3:55016507-55016526 None:intergenic 50.0%
ATGGACATTCTGTCGAACCG+GGG - chr2_3:55017129-55017148 Msa0299790:five_prime_UTR 50.0%
CATTAGCATCAGCTTTGCCC+CGG + chr2_3:55017149-55017168 None:intergenic 50.0%
GGAGCATGTGAAAGATCCAG+TGG - chr2_3:55017230-55017249 Msa0299790:five_prime_UTR 50.0%
GAAGGTGAGGCTCATCAAGA+TGG - chr2_3:55017417-55017436 Msa0299790:five_prime_UTR 50.0%
GTTGTACCACCAAGACCACT+TGG - chr2_3:55017444-55017463 Msa0299790:five_prime_UTR 50.0%
GATCTTGGACCAAGTGGTCT+TGG + chr2_3:55017456-55017475 None:intergenic 50.0%
AAACTACTCTCCTGTGCTGG+TGG + chr2_3:55017540-55017559 None:intergenic 50.0%
TGCAAACTACTCTCCTGTGC+TGG + chr2_3:55017543-55017562 None:intergenic 50.0%
! CCGTGCTGTTACAAGCTGAA+GGG + chr2_3:55016506-55016525 None:intergenic 50.0%
CCCTTCAGCTTGTAACAGCA+CGG - chr2_3:55016503-55016522 Msa0299790:intron 50.0%
! ACCGTGCTGTTACAAGCTGA+AGG + chr2_3:55016507-55016526 None:intergenic 50.0%
ATGGACATTCTGTCGAACCG+GGG - chr2_3:55017129-55017148 Msa0299790:five_prime_UTR 50.0%
CATTAGCATCAGCTTTGCCC+CGG + chr2_3:55017149-55017168 None:intergenic 50.0%
GGAGCATGTGAAAGATCCAG+TGG - chr2_3:55017230-55017249 Msa0299790:five_prime_UTR 50.0%
GAAGGTGAGGCTCATCAAGA+TGG - chr2_3:55017417-55017436 Msa0299790:five_prime_UTR 50.0%
GTTGTACCACCAAGACCACT+TGG - chr2_3:55017444-55017463 Msa0299790:five_prime_UTR 50.0%
GATCTTGGACCAAGTGGTCT+TGG + chr2_3:55017456-55017475 None:intergenic 50.0%
AAACTACTCTCCTGTGCTGG+TGG + chr2_3:55017540-55017559 None:intergenic 50.0%
TGCAAACTACTCTCCTGTGC+TGG + chr2_3:55017543-55017562 None:intergenic 50.0%
! CTTGGACCAAGTGGTCTTGG+TGG + chr2_3:55017453-55017472 None:intergenic 55.0%
! CTTGGACCAAGTGGTCTTGG+TGG + chr2_3:55017453-55017472 None:intergenic 55.0%
!! AGCAGAAGCACCACCAGCAC+AGG - chr2_3:55017527-55017546 Msa0299790:five_prime_UTR 60.0%
!! AGCAGAAGCACCACCAGCAC+AGG - chr2_3:55017527-55017546 Msa0299790:five_prime_UTR 60.0%
TTGGGGTGGGGGGGTGAAGC+AGG + chr2_3:55015881-55015900 None:intergenic 70.0%
TTGGGGTGGGGGGGTGAAGC+AGG + chr2_3:55015881-55015900 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 55015878 55017667 55015878 ID=Msa0299790;Name=Msa0299790
chr2_3 mRNA 55015878 55017667 55015878 ID=Msa0299790-mRNA-1;Parent=Msa0299790;Name=Msa0299790-mRNA-1;_AED=0.15;_eAED=0.15;_QI=654|1|1|1|1|1|2|53|165
chr2_3 exon 55015878 55016435 55015878 ID=Msa0299790-mRNA-1:exon:17539;Parent=Msa0299790-mRNA-1
chr2_3 exon 55017021 55017667 55017021 ID=Msa0299790-mRNA-1:exon:17538;Parent=Msa0299790-mRNA-1
chr2_3 five_prime_UTR 55017021 55017667 55017021 ID=Msa0299790-mRNA-1:five_prime_utr;Parent=Msa0299790-mRNA-1
chr2_3 five_prime_UTR 55016429 55016435 55016429 ID=Msa0299790-mRNA-1:five_prime_utr;Parent=Msa0299790-mRNA-1
chr2_3 CDS 55015931 55016428 55015931 ID=Msa0299790-mRNA-1:cds;Parent=Msa0299790-mRNA-1
chr2_3 three_prime_UTR 55015878 55015930 55015878 ID=Msa0299790-mRNA-1:three_prime_utr;Parent=Msa0299790-mRNA-1
Gene Sequence

>Msa0299790

ATGCTAGTGCTAATGGACATTCTGTCGAACCGGGGCAAAGCTGATGCTAATGCTAATGCTAATGCAGATTCTAATAACATCTGTTCTAATGATTTTGAATGCAACATATGTTTGGAGCATGTGAAAGATCCAGTGGTAACACTTTGTGGTCATCTCTATTGTTGGCCTTGTATTTACAAATGGATTAATAGCACCTCATGGGAACATAATGAGAAACCAGAATGTCCAATATGCAAATCAGAAATTTCAGAATCAACACTTGTTCCACTATATGGTCGTGGTGAAACCACATCAAGTTCTGAAGGTGAGGCTCATCAAGATGGGAATGTTGTACCACCAAGACCACTTGGTCCAAGATCACTTGATACTGCAACTGTTTCACAACCTGAACTAGAACAAGCAGAAGCAGAAGCAGAAGCACCACCAGCACAGGAGAGTAGTTTGCACATTTGCTTACAATATGGCCCATATAAGCTTGATTTCCGGAAATTTGATTGA

Protein sequence

>Msa0299790

MLVLMDILSNRGKADANANANADSNNICSNDFECNICLEHVKDPVVTLCGHLYCWPCIYKWINSTSWEHNEKPECPICKSEISESTLVPLYGRGETTSSSEGEAHQDGNVVPPRPLGPRSLDTATVSQPELEQAEAEAEAPPAQESSLHICLQYGPYKLDFRKFD*