AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0180980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180980 MtrunA17_Chr1g0204131 92.963 270 13 1 1 264 1 270 5.67e-174 494
Msa0180980 MtrunA17_Chr8g0391241 52.913 206 80 3 74 262 6 211 1.60e-62 206
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180980 AT5G51820.1 75.732 239 49 2 35 264 27 265 5.37e-118 351
Msa0180980 AT1G23190.1 56.522 207 73 3 73 262 4 210 2.70e-69 224
Msa0180980 AT1G70730.1 54.106 207 78 3 73 262 5 211 8.43e-66 215
Msa0180980 AT1G70730.3 53.846 208 79 3 72 262 81 288 1.76e-65 216
Msa0180980 AT1G70730.2 53.883 206 78 3 74 262 26 231 8.04e-65 213

Find 64 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAGGACCACCGGGATTA+TGG 0.258958 1_4:+68976532 None:intergenic
AAGAAAATTACCTTGCAAAT+TGG 0.263297 1_4:-68977247 Msa0180980:CDS
TGAATATGATTGGGGTATTA+AGG 0.269904 1_4:-68976514 Msa0180980:intron
TGCTGAACCTCATGGCATTA+AGG 0.270429 1_4:-68977542 Msa0180980:intron
TTCTGATTATCTGGAGCTAT+TGG 0.281712 1_4:-68974332 Msa0180980:CDS
AGATCCAGTTTCTGATTATC+TGG 0.283606 1_4:-68974341 Msa0180980:CDS
TTACCTTGCAAATTGGATTC+AGG 0.292125 1_4:-68977240 Msa0180980:intron
AATGTTGGGGTTACAAAATT+CGG 0.349561 1_4:-68974385 Msa0180980:CDS
TGAAGGAAGAAGAAGGAGAT+TGG 0.361877 1_4:+68977644 None:intergenic
TCCATCACTGACAAGATTTA+CGG 0.365080 1_4:-68976055 Msa0180980:CDS
TTAGTTTGTGTCTGTGTGAT+AGG 0.371421 1_4:+68977837 None:intergenic
TTAATACCCCAATCATATTC+AGG 0.378949 1_4:+68976516 None:intergenic
ATCTTGTCAGTGATGGATTC+TGG 0.380574 1_4:+68976061 None:intergenic
ATCAAAATTGCTGCTGGAAA+TGG 0.394303 1_4:-68976928 Msa0180980:CDS
AGCTCCAGATAATCAGAAAC+TGG 0.395255 1_4:+68974337 None:intergenic
ACGTTGACTTATCAAATGTT+GGG 0.396686 1_4:-68974399 Msa0180980:CDS
GAATTAAAGCGGACTCTTAA+CGG 0.399265 1_4:+68977607 None:intergenic
CGGTGGTCCTGAATATGATT+GGG 0.412166 1_4:-68976523 Msa0180980:CDS
AGTGAGACATTGGAGGTTTG+AGG 0.418570 1_4:+68977691 None:intergenic
TTGAGGTTTGAACGCAGAAA+TGG 0.443295 1_4:+68977708 None:intergenic
TGAAGTTTGAAGGAAGAAGA+AGG 0.448640 1_4:+68977637 None:intergenic
GACGTTGACTTATCAAATGT+TGG 0.453030 1_4:-68974400 Msa0180980:CDS
CCGGTGGTCCTGAATATGAT+TGG 0.455443 1_4:-68976524 Msa0180980:CDS
ATAATAATCAAAATTGCTGC+TGG 0.456040 1_4:-68976934 Msa0180980:CDS
TTGAATTGAAAGTGAGACAT+TGG 0.456324 1_4:+68977681 None:intergenic
TGATTATCTGGAGCTATTGG+AGG 0.462457 1_4:-68974329 Msa0180980:CDS
TGTCCTTCAATGGGTTTGGT+AGG 0.464950 1_4:+68977432 None:intergenic
ATTCCTACCAAACCCATTGA+AGG 0.469265 1_4:-68977435 Msa0180980:CDS
TCCGTAAATCTTGTCAGTGA+TGG 0.471433 1_4:+68976054 None:intergenic
CTCTGTTGATTGAATTAAAG+CGG 0.477431 1_4:+68977596 None:intergenic
TGAGGTTCAGCAATGGTTGT+AGG 0.478449 1_4:+68977553 None:intergenic
TCAGTGATGGATTCTGGTGC+AGG 0.492871 1_4:+68976067 None:intergenic
CTTTAATAGAGAAGCTGCAC+AGG 0.498615 1_4:-68977063 Msa0180980:intron
GGAGATTGGAGAGTGAAGGA+AGG 0.505584 1_4:+68977658 None:intergenic
AGAAGGAGATTGGAGAGTGA+AGG 0.513473 1_4:+68977654 None:intergenic
GTGTGCTTAAACCGATCAAA+TGG 0.516883 1_4:-68977758 Msa0180980:exon
ACATTTGATAAGTCAACGTC+AGG 0.520308 1_4:+68974403 None:intergenic
CTTCCTTATCACAGCAGAAA+CGG 0.542446 1_4:+68976674 None:intergenic
TATAGGGACACTTACAGATA+GGG 0.543532 1_4:+68976027 None:intergenic
AATTGAAAGTGAGACATTGG+AGG 0.547388 1_4:+68977684 None:intergenic
ATTGCTGCTGGAAATGGTGT+TGG 0.550223 1_4:-68976922 Msa0180980:CDS
ATCCAGTTTAATTACAGTAG+TGG 0.550227 1_4:-68976094 Msa0180980:intron
CGTTGACTTATCAAATGTTG+GGG 0.551945 1_4:-68974398 Msa0180980:CDS
CTTATCACAGCAGAAACGGC+TGG 0.555218 1_4:+68976678 None:intergenic
CTTAAACTTCAACAGGCGAA+TGG 0.562488 1_4:-68976576 Msa0180980:intron
GTGTTGGTGTTAGGAGGTGA+TGG 0.568014 1_4:-68977092 Msa0180980:CDS
GTGACAGAAAGCCATTTGAT+CGG 0.571949 1_4:+68977747 None:intergenic
GTTTAATTCATTGCCGCCAG+AGG 0.572278 1_4:-68977129 Msa0180980:CDS
AAACCTGAATCCAATTTGCA+AGG 0.579422 1_4:+68977237 None:intergenic
ACAACCATTGCTGAACCTCA+TGG 0.580101 1_4:-68977550 Msa0180980:CDS
AATGGAGTGTTGGTGTTAGG+AGG 0.581232 1_4:-68977098 Msa0180980:CDS
AGCAATGGTTGTAGGAGAAG+AGG 0.585318 1_4:+68977561 None:intergenic
CAATCATATTCAGGACCACC+GGG 0.600642 1_4:+68976525 None:intergenic
AAACTTCAACAGGCGAATGG+TGG 0.601613 1_4:-68976573 Msa0180980:intron
CCAATCATATTCAGGACCAC+CGG 0.606027 1_4:+68976524 None:intergenic
ATGAGTGCAAGCCATAATCC+CGG 0.620791 1_4:-68976543 Msa0180980:CDS
TGTGTCTGTGTGATAGGACT+AGG 0.622818 1_4:+68977843 None:intergenic
GGTGGTCCTGAATATGATTG+GGG 0.636303 1_4:-68976522 Msa0180980:CDS
GTCTGTGTGATAGGACTAGG+AGG 0.669283 1_4:+68977846 None:intergenic
AAAATTCGGAAGCTTCAGTG+TGG 0.670150 1_4:-68974371 Msa0180980:CDS
AATGCCATGAGGTTCAGCAA+TGG 0.683158 1_4:+68977546 None:intergenic
GAAAGAACCTTAATGCCATG+AGG 0.691242 1_4:+68977535 None:intergenic
AGAAAGTGCTGATCATTACA+CGG 0.706063 1_4:-68977788 Msa0180980:five_prime_UTR
AGTGCAAGCCATAATCCCGG+TGG 0.744470 1_4:-68976540 Msa0180980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAAAATTTGATTTCTA+TGG + chr1_4:68975150-68975169 None:intergenic 10.0%
!!! TTTGAAATTAATAAAACTAA+GGG + chr1_4:68976944-68976963 None:intergenic 10.0%
!!! TTTTGAAATTAATAAAACTA+AGG + chr1_4:68976945-68976964 None:intergenic 10.0%
!!! AGTTTTATTAATTTCAAAAT+TGG - chr1_4:68976946-68976965 Msa0180980:intron 10.0%
!!! GTTTTATTAATTTCAAAATT+GGG - chr1_4:68976947-68976966 Msa0180980:intron 10.0%
!! TTAAACTTATGTGAATTTAT+AGG - chr1_4:68975010-68975029 Msa0180980:intron 15.0%
!!! TACTTTTTAATTTCTAATAC+AGG - chr1_4:68975447-68975466 Msa0180980:intron 15.0%
!!! ACTTTTTAATTTCTAATACA+GGG - chr1_4:68975448-68975467 Msa0180980:intron 15.0%
!! TTAAGGAATACTTAAATATA+GGG + chr1_4:68976158-68976177 None:intergenic 15.0%
!! ATTAAGGAATACTTAAATAT+AGG + chr1_4:68976159-68976178 None:intergenic 15.0%
!! TAGTAGAATTAATTTCATAA+GGG - chr1_4:68976300-68976319 Msa0180980:intron 15.0%
!! TTATTAATATTTCTTTCATG+AGG + chr1_4:68977516-68977535 None:intergenic 15.0%
!! AATCTTCAAGAAAAAAGAAA+GGG + chr1_4:68974705-68974724 None:intergenic 20.0%
!! TAATCTTCAAGAAAAAAGAA+AGG + chr1_4:68974706-68974725 None:intergenic 20.0%
!!! ACTATATTTGTTTGTTTTGT+AGG - chr1_4:68974881-68974900 Msa0180980:intron 20.0%
!! ATATGAGAAGAAAGTAAATA+AGG + chr1_4:68976267-68976286 None:intergenic 20.0%
!! GTAGTAGAATTAATTTCATA+AGG - chr1_4:68976299-68976318 Msa0180980:intron 20.0%
!! TTTCTATTAGTAGATATTCA+AGG + chr1_4:68976341-68976360 None:intergenic 20.0%
!! GAATATCTACTAATAGAAAA+TGG - chr1_4:68976342-68976361 Msa0180980:intron 20.0%
!! TAAACTTTATGCTATCTTAA+TGG + chr1_4:68976378-68976397 None:intergenic 20.0%
!!! TTATTACAAAAAGTACAAGT+TGG + chr1_4:68976415-68976434 None:intergenic 20.0%
!!! ATTACCATGAAACAATTTTA+GGG + chr1_4:68976548-68976567 None:intergenic 20.0%
!!! GAGATTTTGCAAAAATTTAA+AGG + chr1_4:68976656-68976675 None:intergenic 20.0%
!! GATATTACAGAACATAATTA+AGG - chr1_4:68976805-68976824 Msa0180980:intron 20.0%
!! ATAAATTATTTCATCACAAG+AGG - chr1_4:68977124-68977143 Msa0180980:CDS 20.0%
!! TATAATAACAATAAGCAATG+TGG + chr1_4:68977316-68977335 None:intergenic 20.0%
!!! ACATTGCTTATTGTTATTAT+AGG - chr1_4:68977315-68977334 Msa0180980:intron 20.0%
!!! CTAAGTGTTATTTTTATCAA+AGG + chr1_4:68977427-68977446 None:intergenic 20.0%
! TTCACCATTATATTAGTGAT+GGG - chr1_4:68974831-68974850 Msa0180980:intron 25.0%
! AAGAAAATTACCTTGCAAAT+TGG - chr1_4:68974919-68974938 Msa0180980:intron 25.0%
! ATAATAATCAAAATTGCTGC+TGG - chr1_4:68975232-68975251 Msa0180980:intron 25.0%
! CTTGTTAATTGTTACAAGAA+AGG - chr1_4:68975311-68975330 Msa0180980:intron 25.0%
! TAATTGTTACAAGAAAGGAT+AGG - chr1_4:68975316-68975335 Msa0180980:intron 25.0%
!! TTTAATTTCTAATACAGGGA+AGG - chr1_4:68975452-68975471 Msa0180980:intron 25.0%
! TTAATTTCTAATACAGGGAA+GGG - chr1_4:68975453-68975472 Msa0180980:intron 25.0%
! AATACTATGCTAAGGAAAAA+AGG + chr1_4:68975540-68975559 None:intergenic 25.0%
!! TCATTTTCTTAAACTTCAAC+AGG - chr1_4:68975583-68975602 Msa0180980:intron 25.0%
!! ATTAGTTCTCATCCATTTAA+AGG - chr1_4:68975686-68975705 Msa0180980:intron 25.0%
! TCGGTATTTATTATGCATAT+GGG + chr1_4:68975939-68975958 None:intergenic 25.0%
! ATCGGTATTTATTATGCATA+TGG + chr1_4:68975940-68975959 None:intergenic 25.0%
!! AAAGCTATGTATTGACAAAT+CGG + chr1_4:68975958-68975977 None:intergenic 25.0%
! TTAGTAGATATTCAAGGAAA+TGG + chr1_4:68976335-68976354 None:intergenic 25.0%
!! CATTACCATGAAACAATTTT+AGG + chr1_4:68976549-68976568 None:intergenic 25.0%
! AAATGACAAATCATCATAAG+TGG + chr1_4:68976604-68976623 None:intergenic 25.0%
!! TTTTGCAAAAATTTAAAGGC+AGG + chr1_4:68976652-68976671 None:intergenic 25.0%
! ATTCTTCATGTTAGAAGTTA+CGG + chr1_4:68976916-68976935 None:intergenic 25.0%
! TTAATTTCAAAATTGGGTCT+AGG - chr1_4:68976953-68976972 Msa0180980:intron 25.0%
! ATTTATCGATATTGAAAAGC+TGG - chr1_4:68977058-68977077 Msa0180980:intron 25.0%
! CTAATAAAACATTTCCATTC+AGG - chr1_4:68977175-68977194 Msa0180980:intron 25.0%
! TTTCAACATAATCAGATGAT+CGG + chr1_4:68977212-68977231 None:intergenic 25.0%
!!! ATCATGTTTTAAAACTTGGT+AGG + chr1_4:68977275-68977294 None:intergenic 25.0%
!!! ACGAATCATGTTTTAAAACT+TGG + chr1_4:68977279-68977298 None:intergenic 25.0%
!!! AGGTTTTTTCATTCAACATA+TGG + chr1_4:68977496-68977515 None:intergenic 25.0%
! TTAATTGTCCAAAAAAAACC+AGG + chr1_4:68977618-68977637 None:intergenic 25.0%
! TTATTTGTCAAAGAAACTGT+AGG + chr1_4:68977647-68977666 None:intergenic 25.0%
! TACAGTTTCTTTGACAAATA+AGG - chr1_4:68977646-68977665 Msa0180980:CDS 25.0%
TTGAATTGAAAGTGAGACAT+TGG + chr1_4:68974488-68974507 None:intergenic 30.0%
! CTCTGTTGATTGAATTAAAG+CGG + chr1_4:68974573-68974592 None:intergenic 30.0%
GTTCACCATTATATTAGTGA+TGG - chr1_4:68974830-68974849 Msa0180980:intron 30.0%
ATAGCCCATCACTAATATAA+TGG + chr1_4:68974838-68974857 None:intergenic 30.0%
! AAATGGTGTTGGAAAAATTC+TGG - chr1_4:68975255-68975274 Msa0180980:intron 30.0%
TTGCTGAAAATACTATGCTA+AGG + chr1_4:68975548-68975567 None:intergenic 30.0%
TTAATACCCCAATCATATTC+AGG + chr1_4:68975653-68975672 None:intergenic 30.0%
! TGAATATGATTGGGGTATTA+AGG - chr1_4:68975652-68975671 Msa0180980:intron 30.0%
ATTGATCCATGACCTTTAAA+TGG + chr1_4:68975701-68975720 None:intergenic 30.0%
AATAAAACCAAGCAACTTCA+GGG + chr1_4:68975755-68975774 None:intergenic 30.0%
TAATAAAACCAAGCAACTTC+AGG + chr1_4:68975756-68975775 None:intergenic 30.0%
!!! TTGCTTGGTTTTATTAGCTT+TGG - chr1_4:68975760-68975779 Msa0180980:intron 30.0%
!!! TGGTTTTATTAGCTTTGGTT+AGG - chr1_4:68975765-68975784 Msa0180980:intron 30.0%
! TCTGAATCGAAAACTTTTCA+AGG + chr1_4:68975804-68975823 None:intergenic 30.0%
ATCCAGTTTAATTACAGTAG+TGG - chr1_4:68976072-68976091 Msa0180980:CDS 30.0%
ACTGAAGGATTGGAATATTA+AGG + chr1_4:68976175-68976194 None:intergenic 30.0%
! TATTGCAGTGTACTAGATTT+TGG + chr1_4:68976459-68976478 None:intergenic 30.0%
AGATCCCTAAAATTGTTTCA+TGG - chr1_4:68976541-68976560 Msa0180980:CDS 30.0%
! GAGTACAAAGAATGACTTTT+GGG + chr1_4:68976572-68976591 None:intergenic 30.0%
! AGAGTACAAAGAATGACTTT+TGG + chr1_4:68976573-68976592 None:intergenic 30.0%
! GATTTGTCATTTACACTTTG+TGG - chr1_4:68976612-68976631 Msa0180980:intron 30.0%
CAAATTAACAATGCTCCTAA+AGG - chr1_4:68976865-68976884 Msa0180980:intron 30.0%
TTCTTCATGTTAGAAGTTAC+GGG + chr1_4:68976915-68976934 None:intergenic 30.0%
AAAATTGGGTCTAGGTATAT+TGG - chr1_4:68976961-68976980 Msa0180980:intron 30.0%
!! GAGTAACATTGTTGTTTATC+TGG - chr1_4:68977007-68977026 Msa0180980:intron 30.0%
AGAGAATACTAGTATAGAGA+TGG + chr1_4:68977102-68977121 None:intergenic 30.0%
GATCATCTGATTATGTTGAA+AGG - chr1_4:68977211-68977230 Msa0180980:intron 30.0%
!!! GACTTGTTCTTTTAGAATGT+AGG - chr1_4:68977337-68977356 Msa0180980:intron 30.0%
! AGTTTTTATCCCCTTTAAAC+AGG - chr1_4:68977467-68977486 Msa0180980:intron 30.0%
! GTTTTTATCCCCTTTAAACA+GGG - chr1_4:68977468-68977487 Msa0180980:intron 30.0%
AATCCATATAAATCCCTACA+TGG - chr1_4:68977534-68977553 Msa0180980:intron 30.0%
TTACCATGTAGGGATTTATA+TGG + chr1_4:68977540-68977559 None:intergenic 30.0%
!! AGTTTTGTCCTGGTTTTTTT+TGG - chr1_4:68977607-68977626 Msa0180980:CDS 30.0%
!! ACGTTGACTTATCAAATGTT+GGG - chr1_4:68977767-68977786 Msa0180980:five_prime_UTR 30.0%
AATGTTGGGGTTACAAAATT+CGG - chr1_4:68977781-68977800 Msa0180980:five_prime_UTR 30.0%
!! TTAGTTTGTGTCTGTGTGAT+AGG + chr1_4:68974332-68974351 None:intergenic 35.0%
!! AGAAAGTGCTGATCATTACA+CGG - chr1_4:68974378-68974397 Msa0180980:CDS 35.0%
AATTGAAAGTGAGACATTGG+AGG + chr1_4:68974485-68974504 None:intergenic 35.0%
TGAAGTTTGAAGGAAGAAGA+AGG + chr1_4:68974532-68974551 None:intergenic 35.0%
! GAATTAAAGCGGACTCTTAA+CGG + chr1_4:68974562-68974581 None:intergenic 35.0%
!! TTTTTGTCCTTCAATGGGTT+TGG + chr1_4:68974741-68974760 None:intergenic 35.0%
!!! CCAGTTTTTTGTCCTTCAAT+GGG + chr1_4:68974746-68974765 None:intergenic 35.0%
!!! ACCAGTTTTTTGTCCTTCAA+TGG + chr1_4:68974747-68974766 None:intergenic 35.0%
GACAAAAAACTGGTACAAGT+GGG - chr1_4:68974753-68974772 Msa0180980:intron 35.0%
TTACCTTGCAAATTGGATTC+AGG - chr1_4:68974926-68974945 Msa0180980:intron 35.0%
AAACCTGAATCCAATTTGCA+AGG + chr1_4:68974932-68974951 None:intergenic 35.0%
!! ACTCCATTTTTGTAATCCTC+TGG + chr1_4:68975056-68975075 None:intergenic 35.0%
GGATTACAAAAATGGAGTGT+TGG - chr1_4:68975058-68975077 Msa0180980:intron 35.0%
!! AAAAATGGAGTGTTGGTGTT+AGG - chr1_4:68975065-68975084 Msa0180980:intron 35.0%
CTATGGTGACACATTCAAAA+AGG + chr1_4:68975133-68975152 None:intergenic 35.0%
ATCAAAATTGCTGCTGGAAA+TGG - chr1_4:68975238-68975257 Msa0180980:intron 35.0%
ACATGAATCAAGAGCTAGTA+AGG - chr1_4:68975343-68975362 Msa0180980:intron 35.0%
CATGAATCAAGAGCTAGTAA+GGG - chr1_4:68975344-68975363 Msa0180980:intron 35.0%
GATTGGATAAACATCTGTCT+TGG - chr1_4:68975370-68975389 Msa0180980:intron 35.0%
TGCTAAGGAAAAAAGGAGTA+TGG + chr1_4:68975533-68975552 None:intergenic 35.0%
TCTCATCCATTTAAAGGTCA+TGG - chr1_4:68975692-68975711 Msa0180980:intron 35.0%
!! ATTAGCTTTGGTTAGGACAT+TGG - chr1_4:68975772-68975791 Msa0180980:intron 35.0%
! TTTTTGTCGATGTATCGCTA+AGG - chr1_4:68975835-68975854 Msa0180980:intron 35.0%
! TTGTTATTGATGCATCGCTA+GGG - chr1_4:68975895-68975914 Msa0180980:intron 35.0%
GTCCACTACTGTAATTAAAC+TGG + chr1_4:68976077-68976096 None:intergenic 35.0%
TCCATCACTGACAAGATTTA+CGG - chr1_4:68976111-68976130 Msa0180980:intron 35.0%
TATAGGGACACTTACAGATA+GGG + chr1_4:68976142-68976161 None:intergenic 35.0%
ATATAGGGACACTTACAGAT+AGG + chr1_4:68976143-68976162 None:intergenic 35.0%
TGTGCAAGTCAAACATTTCA+AGG + chr1_4:68976203-68976222 None:intergenic 35.0%
CAATATTTCATCCTCCAACA+AGG + chr1_4:68976233-68976252 None:intergenic 35.0%
TGTTCAAGTGGATAACCTTT+AGG + chr1_4:68976883-68976902 None:intergenic 35.0%
GAATACTAGTATAGAGATGG+AGG + chr1_4:68977099-68977118 None:intergenic 35.0%
CGGCTAAAAAAATACCTGAA+TGG + chr1_4:68977192-68977211 None:intergenic 35.0%
GGTAGGATGATATATGCAAA+AGG + chr1_4:68977258-68977277 None:intergenic 35.0%
TTTATCAAAGGTTGTGCTTG+AGG + chr1_4:68977415-68977434 None:intergenic 35.0%
ATATGGTTCCCTGTTTAAAG+GGG + chr1_4:68977479-68977498 None:intergenic 35.0%
CATATGGTTCCCTGTTTAAA+GGG + chr1_4:68977480-68977499 None:intergenic 35.0%
ACATATGGTTCCCTGTTTAA+AGG + chr1_4:68977481-68977500 None:intergenic 35.0%
TTCCTGACTATTACCATGTA+GGG + chr1_4:68977550-68977569 None:intergenic 35.0%
TTTCCTGACTATTACCATGT+AGG + chr1_4:68977551-68977570 None:intergenic 35.0%
!! TGGATTTGTTGATTACTCGT+AGG + chr1_4:68977577-68977596 None:intergenic 35.0%
ATCTCAGAAATCTGTGTCAA+CGG + chr1_4:68977727-68977746 None:intergenic 35.0%
ACATTTGATAAGTCAACGTC+AGG + chr1_4:68977766-68977785 None:intergenic 35.0%
!! GACGTTGACTTATCAAATGT+TGG - chr1_4:68977766-68977785 Msa0180980:five_prime_UTR 35.0%
!! CGTTGACTTATCAAATGTTG+GGG - chr1_4:68977768-68977787 Msa0180980:five_prime_UTR 35.0%
AGATCCAGTTTCTGATTATC+TGG - chr1_4:68977825-68977844 Msa0180980:five_prime_UTR 35.0%
! TTCTGATTATCTGGAGCTAT+TGG - chr1_4:68977834-68977853 Msa0180980:five_prime_UTR 35.0%
GTGTGCTTAAACCGATCAAA+TGG - chr1_4:68974408-68974427 Msa0180980:CDS 40.0%
GTGACAGAAAGCCATTTGAT+CGG + chr1_4:68974422-68974441 None:intergenic 40.0%
TTGAGGTTTGAACGCAGAAA+TGG + chr1_4:68974461-68974480 None:intergenic 40.0%
TGAAGGAAGAAGAAGGAGAT+TGG + chr1_4:68974525-68974544 None:intergenic 40.0%
!!! CGGAGAGTTTTGAAGTTTGA+AGG + chr1_4:68974542-68974561 None:intergenic 40.0%
GAAAGAACCTTAATGCCATG+AGG + chr1_4:68974634-68974653 None:intergenic 40.0%
ATTCCTACCAAACCCATTGA+AGG - chr1_4:68974731-68974750 Msa0180980:intron 40.0%
CCCATTGAAGGACAAAAAAC+TGG - chr1_4:68974743-68974762 Msa0180980:intron 40.0%
GGACAAAAAACTGGTACAAG+TGG - chr1_4:68974752-68974771 Msa0180980:intron 40.0%
!! TACAAGTGGGCTACGAAAAA+AGG - chr1_4:68974766-68974785 Msa0180980:intron 40.0%
!! CCATTTTTGTAATCCTCTGG+CGG + chr1_4:68975053-68975072 None:intergenic 40.0%
CTTTAATAGAGAAGCTGCAC+AGG - chr1_4:68975103-68975122 Msa0180980:intron 40.0%
! GGTGTTGGAAAAATTCTGGT+TGG - chr1_4:68975259-68975278 Msa0180980:intron 40.0%
AATCAAGAGCTAGTAAGGGA+TGG - chr1_4:68975348-68975367 Msa0180980:intron 40.0%
CTTCCTTATCACAGCAGAAA+CGG + chr1_4:68975495-68975514 None:intergenic 40.0%
TTTCTGCTGTGATAAGGAAG+AGG - chr1_4:68975495-68975514 Msa0180980:intron 40.0%
CTTAAACTTCAACAGGCGAA+TGG - chr1_4:68975590-68975609 Msa0180980:intron 40.0%
! AAGCCTTTTGCCACTAAGTA+GGG + chr1_4:68975861-68975880 None:intergenic 40.0%
! GTTGTTATTGATGCATCGCT+AGG - chr1_4:68975894-68975913 Msa0180980:intron 40.0%
TGTTATTGATGCATCGCTAG+GGG - chr1_4:68975896-68975915 Msa0180980:intron 40.0%
ACATAACACACACTAGAGTC+TGG + chr1_4:68976007-68976026 None:intergenic 40.0%
!! ATCTTGTCAGTGATGGATTC+TGG + chr1_4:68976108-68976127 None:intergenic 40.0%
TCCGTAAATCTTGTCAGTGA+TGG + chr1_4:68976115-68976134 None:intergenic 40.0%
CATTTCAAGGAACAGACTGA+AGG + chr1_4:68976190-68976209 None:intergenic 40.0%
!!! CAGTGTACTAGATTTTGGCT+AGG + chr1_4:68976454-68976473 None:intergenic 40.0%
TCATTTACACTTTGTGGCGA+GGG - chr1_4:68976618-68976637 Msa0180980:intron 40.0%
GTTTCTCTCTCTTTCTGTCT+TGG - chr1_4:68976704-68976723 Msa0180980:intron 40.0%
!!! GGAATTTTTTCCCTCTCTAG+AGG - chr1_4:68976725-68976744 Msa0180980:intron 40.0%
!! TTTTCCCTCTCTAGAGGTAT+CGG - chr1_4:68976731-68976750 Msa0180980:intron 40.0%
GGTTATCCACTTGAACATTC+AGG - chr1_4:68976886-68976905 Msa0180980:intron 40.0%
ATCCCTACATGGTAATAGTC+AGG - chr1_4:68977545-68977564 Msa0180980:CDS 40.0%
GGACAAAACTTTGTGTGCAA+TGG + chr1_4:68977597-68977616 None:intergenic 40.0%
!! TTGCACACAAAGTTTTGTCC+TGG - chr1_4:68977597-68977616 Msa0180980:CDS 40.0%
AAAATTCGGAAGCTTCAGTG+TGG - chr1_4:68977795-68977814 Msa0180980:five_prime_UTR 40.0%
AGCTCCAGATAATCAGAAAC+TGG + chr1_4:68977832-68977851 None:intergenic 40.0%
! TGATTATCTGGAGCTATTGG+AGG - chr1_4:68977837-68977856 Msa0180980:five_prime_UTR 40.0%
TGTGTCTGTGTGATAGGACT+AGG + chr1_4:68974326-68974345 None:intergenic 45.0%
AGTGAGACATTGGAGGTTTG+AGG + chr1_4:68974478-68974497 None:intergenic 45.0%
AGAAGGAGATTGGAGAGTGA+AGG + chr1_4:68974515-68974534 None:intergenic 45.0%
AGCAATGGTTGTAGGAGAAG+AGG + chr1_4:68974608-68974627 None:intergenic 45.0%
TGAGGTTCAGCAATGGTTGT+AGG + chr1_4:68974616-68974635 None:intergenic 45.0%
ACAACCATTGCTGAACCTCA+TGG - chr1_4:68974616-68974635 Msa0180980:intron 45.0%
AATGCCATGAGGTTCAGCAA+TGG + chr1_4:68974623-68974642 None:intergenic 45.0%
TGCTGAACCTCATGGCATTA+AGG - chr1_4:68974624-68974643 Msa0180980:intron 45.0%
! TGTCCTTCAATGGGTTTGGT+AGG + chr1_4:68974737-68974756 None:intergenic 45.0%
!! AGTGGGCTACGAAAAAAGGT+TGG - chr1_4:68974770-68974789 Msa0180980:intron 45.0%
GTTTAATTCATTGCCGCCAG+AGG - chr1_4:68975037-68975056 Msa0180980:intron 45.0%
CCGCCAGAGGATTACAAAAA+TGG - chr1_4:68975050-68975069 Msa0180980:intron 45.0%
!! AATGGAGTGTTGGTGTTAGG+AGG - chr1_4:68975068-68975087 Msa0180980:intron 45.0%
ATTGCTGCTGGAAATGGTGT+TGG - chr1_4:68975244-68975263 Msa0180980:intron 45.0%
AGAGCTAGTAAGGGATGGAT+TGG - chr1_4:68975353-68975372 Msa0180980:intron 45.0%
AAACTTCAACAGGCGAATGG+TGG - chr1_4:68975593-68975612 Msa0180980:intron 45.0%
ATGAGTGCAAGCCATAATCC+CGG - chr1_4:68975623-68975642 Msa0180980:intron 45.0%
CAATCATATTCAGGACCACC+GGG + chr1_4:68975644-68975663 None:intergenic 45.0%
CCAATCATATTCAGGACCAC+CGG + chr1_4:68975645-68975664 None:intergenic 45.0%
CGGTGGTCCTGAATATGATT+GGG - chr1_4:68975643-68975662 Msa0180980:intron 45.0%
GGTGGTCCTGAATATGATTG+GGG - chr1_4:68975644-68975663 Msa0180980:intron 45.0%
! CAAGCCTTTTGCCACTAAGT+AGG + chr1_4:68975862-68975881 None:intergenic 45.0%
CTACTTAGTGGCAAAAGGCT+TGG - chr1_4:68975860-68975879 Msa0180980:intron 45.0%
CAAGGAACAGACTGAAGGAT+TGG + chr1_4:68976185-68976204 None:intergenic 45.0%
TTGCACATGTGTTGCCTTGT+TGG - chr1_4:68976216-68976235 Msa0180980:intron 45.0%
! CTGCAATAGCACGAAGTGTT+TGG - chr1_4:68976471-68976490 Msa0180980:intron 45.0%
GTCATTTACACTTTGTGGCG+AGG - chr1_4:68976617-68976636 Msa0180980:intron 45.0%
!! GAGGTATCGGCTGAATTGTT+TGG - chr1_4:68976744-68976763 Msa0180980:intron 45.0%
TAGAATTGCATGCCACCACT+TGG - chr1_4:68977361-68977380 Msa0180980:intron 45.0%
GATCTCTGTTTGAGTCCAAG+TGG + chr1_4:68977379-68977398 None:intergenic 45.0%
GTCTGTGTGATAGGACTAGG+AGG + chr1_4:68974323-68974342 None:intergenic 50.0%
GGAGATTGGAGAGTGAAGGA+AGG + chr1_4:68974511-68974530 None:intergenic 50.0%
!! GTGTTGGTGTTAGGAGGTGA+TGG - chr1_4:68975074-68975093 Msa0180980:intron 50.0%
CTTATCACAGCAGAAACGGC+TGG + chr1_4:68975491-68975510 None:intergenic 50.0%
CAGCCGTTTCTGCTGTGATA+AGG - chr1_4:68975489-68975508 Msa0180980:intron 50.0%
TGCTGTGATAAGGAAGAGGC+AGG - chr1_4:68975499-68975518 Msa0180980:intron 50.0%
ATTCAGGACCACCGGGATTA+TGG + chr1_4:68975637-68975656 None:intergenic 50.0%
CCGGTGGTCCTGAATATGAT+TGG - chr1_4:68975642-68975661 Msa0180980:intron 50.0%
TAGTGCTCCCTGAAGTTGCT+TGG - chr1_4:68975745-68975764 Msa0180980:intron 50.0%
ATCGCTAAGGCCCTACTTAG+TGG - chr1_4:68975848-68975867 Msa0180980:intron 50.0%
AGGCCCTACTTAGTGGCAAA+AGG - chr1_4:68975855-68975874 Msa0180980:intron 50.0%
!! TCAGTGATGGATTCTGGTGC+AGG + chr1_4:68976102-68976121 None:intergenic 50.0%
! CACATGTGTTGCCTTGTTGG+AGG - chr1_4:68976219-68976238 Msa0180980:intron 50.0%
! TCAGCCGATACCTCTAGAGA+GGG + chr1_4:68976738-68976757 None:intergenic 50.0%
! TTCAGCCGATACCTCTAGAG+AGG + chr1_4:68976739-68976758 None:intergenic 50.0%
GGGTTGCCTGAATGTTCAAG+TGG + chr1_4:68976895-68976914 None:intergenic 50.0%
CTCTGTTTGAGTCCAAGTGG+TGG + chr1_4:68977376-68977395 None:intergenic 50.0%
TGCTTGAGGTAGCAGCTCTA+AGG + chr1_4:68977401-68977420 None:intergenic 50.0%
AGTGCAAGCCATAATCCCGG+TGG - chr1_4:68975626-68975645 Msa0180980:intron 55.0%
TACACTTTGTGGCGAGGGCT+TGG - chr1_4:68976623-68976642 Msa0180980:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 68974300 68977888 68974300 ID=Msa0180980;Name=Msa0180980
chr1_4 mRNA 68974300 68977888 68974300 ID=Msa0180980-mRNA-1;Parent=Msa0180980;Name=Msa0180980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=127|0.87|0.88|1|1|1|9|3|265
chr1_4 exon 68974300 68974452 68974300 ID=Msa0180980-mRNA-1:exon:22897;Parent=Msa0180980-mRNA-1
chr1_4 exon 68976042 68976110 68976042 ID=Msa0180980-mRNA-1:exon:22896;Parent=Msa0180980-mRNA-1
chr1_4 exon 68976515 68976583 68976515 ID=Msa0180980-mRNA-1:exon:22895;Parent=Msa0180980-mRNA-1
chr1_4 exon 68976686 68976719 68976686 ID=Msa0180980-mRNA-1:exon:22894;Parent=Msa0180980-mRNA-1
chr1_4 exon 68976904 68976956 68976904 ID=Msa0180980-mRNA-1:exon:22893;Parent=Msa0180980-mRNA-1
chr1_4 exon 68977064 68977156 68977064 ID=Msa0180980-mRNA-1:exon:22892;Parent=Msa0180980-mRNA-1
chr1_4 exon 68977241 68977285 68977241 ID=Msa0180980-mRNA-1:exon:22891;Parent=Msa0180980-mRNA-1
chr1_4 exon 68977401 68977466 68977401 ID=Msa0180980-mRNA-1:exon:22890;Parent=Msa0180980-mRNA-1
chr1_4 exon 68977543 68977888 68977543 ID=Msa0180980-mRNA-1:exon:22889;Parent=Msa0180980-mRNA-1
chr1_4 five_prime_UTR 68977762 68977888 68977762 ID=Msa0180980-mRNA-1:five_prime_utr;Parent=Msa0180980-mRNA-1
chr1_4 CDS 68977543 68977761 68977543 ID=Msa0180980-mRNA-1:cds;Parent=Msa0180980-mRNA-1
chr1_4 CDS 68977401 68977466 68977401 ID=Msa0180980-mRNA-1:cds;Parent=Msa0180980-mRNA-1
chr1_4 CDS 68977241 68977285 68977241 ID=Msa0180980-mRNA-1:cds;Parent=Msa0180980-mRNA-1
chr1_4 CDS 68977064 68977156 68977064 ID=Msa0180980-mRNA-1:cds;Parent=Msa0180980-mRNA-1
chr1_4 CDS 68976904 68976956 68976904 ID=Msa0180980-mRNA-1:cds;Parent=Msa0180980-mRNA-1
chr1_4 CDS 68976686 68976719 68976686 ID=Msa0180980-mRNA-1:cds;Parent=Msa0180980-mRNA-1
chr1_4 CDS 68976515 68976583 68976515 ID=Msa0180980-mRNA-1:cds;Parent=Msa0180980-mRNA-1
chr1_4 CDS 68976042 68976110 68976042 ID=Msa0180980-mRNA-1:cds;Parent=Msa0180980-mRNA-1
chr1_4 CDS 68974303 68974452 68974303 ID=Msa0180980-mRNA-1:cds;Parent=Msa0180980-mRNA-1
chr1_4 three_prime_UTR 68974300 68974302 68974300 ID=Msa0180980-mRNA-1:three_prime_utr;Parent=Msa0180980-mRNA-1
Gene Sequence

>Msa0180980

ATGGCTTTCTGTCACAGACTCAACAACTTGACCATTTCTGCGTTCAAACCTCAAACCTCCAATGTCTCACTTTCAATTCAACCTTCCTTCACTCTCCAATCTCCTTCTTCTTCCTTCAAACTTCAAAACTCTCCGTTAAGAGTCCGCTTTAATTCAATCAACAGAGCAACTTCTTCATCCTCTTCTCCTACAACCATTGCTGAACCTCATGGCATTAAGATTAACTCTATTCCTACCAAACCCATTGAAGGACAAAAAACTGGTACAAGTGGGCTACGAAAAAAGGTGAAAGTGTTTATGCAAGAAAATTACCTTGCAAATTGGATTCAGGCACTGTTTAATTCATTGCCGCCAGAGGATTACAAAAATGGAGTGTTGGTGTTAGGAGGTGATGGTCGATACTTTAATAGAGAAGCTGCACAGATAATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTGGTTGGAAAGGAAGGGATATTGTCAACACCAGCCGTTTCTGCTGCGAATGGTGGATTTATTATGAGTGCAAGCCATAATCCCGGTGGTCCTGAATATGATTGGGGTATTAAGTTTAATTACAGTAGTGGACAACCTGCACCAGAATCCATCACTGACAAGATTTACGGAAACACCCTATCTATTTCTGAGATAAAGATTGCTGACATTCCTGACGTTGACTTATCAAATGTTGGGGTTACAAAATTCGGAAGCTTCAGTGTGGAAGTAATAGATCCAGTTTCTGATTATCTGGAGCTATTGGAGGTCAATTTTTTTTTTGCATTATCATAA

Protein sequence

>Msa0180980

MAFCHRLNNLTISAFKPQTSNVSLSIQPSFTLQSPSSSFKLQNSPLRVRFNSINRATSSSSSPTTIAEPHGIKINSIPTKPIEGQKTGTSGLRKKVKVFMQENYLANWIQALFNSLPPEDYKNGVLVLGGDGRYFNREAAQIIIKIAAGNGVGKILVGKEGILSTPAVSAANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIADIPDVDLSNVGVTKFGSFSVEVIDPVSDYLELLEVNFFFALS*