AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0572930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572930 MtrunA17_Chr8g0388651 98.540 548 5 1 1 548 1 545 0.0 1117
Msa0572930 MtrunA17_Chr6g0481031 48.869 442 222 3 76 515 100 539 2.14e-153 451
Msa0572930 MtrunA17_Chr4g0055281 45.098 510 263 9 19 522 13 511 1.23e-145 430
Msa0572930 MtrunA17_Chr5g0400001 44.898 490 242 7 30 519 51 512 3.07e-144 426
Msa0572930 MtrunA17_Chr5g0399991 45.708 466 234 6 83 541 90 543 4.22e-143 424
Msa0572930 MtrunA17_Chr4g0023601 36.842 437 265 7 83 514 14 444 2.25e-102 317
Msa0572930 MtrunA17_Chr2g0323051 37.045 440 262 8 83 515 87 518 4.42e-101 317
Msa0572930 MtrunA17_Chr7g0247631 35.657 502 307 10 18 512 200 692 1.61e-92 298
Msa0572930 MtrunA17_Chr2g0286431 37.585 439 258 8 77 513 78 502 1.81e-90 288
Msa0572930 MtrunA17_Chr5g0408851 35.468 406 254 6 83 487 219 617 1.36e-73 246
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572930 AT4G17090.1 45.363 496 260 8 27 519 30 517 4.27e-150 442
Msa0572930 AT3G23920.1 48.970 437 217 3 83 515 107 541 1.60e-148 439
Msa0572930 AT5G55700.1 39.597 447 255 6 78 514 88 529 1.26e-103 322
Msa0572930 AT4G00490.1 38.799 433 256 6 83 512 96 522 3.18e-102 319
Msa0572930 AT4G15210.1 36.818 440 262 8 83 514 15 446 4.04e-102 317
Msa0572930 AT4G15210.2 38.718 390 231 6 83 470 15 398 1.57e-96 300
Msa0572930 AT4G15210.3 36.409 401 240 7 121 514 1 393 2.81e-93 292
Msa0572930 AT4G15210.4 36.409 401 240 7 121 514 1 393 2.81e-93 292
Msa0572930 AT2G32290.1 34.842 442 274 8 83 518 79 512 7.99e-90 288
Msa0572930 AT2G45880.1 37.300 437 257 8 83 512 249 675 1.20e-84 277
Msa0572930 AT5G45300.2 37.913 393 237 5 83 474 254 640 5.20e-78 259
Msa0572930 AT5G45300.1 37.913 393 237 5 83 474 256 642 6.39e-78 259
Msa0572930 AT5G45300.3 37.913 393 237 5 83 474 270 656 8.27e-78 259
Msa0572930 AT5G18670.1 35.586 444 242 10 84 513 89 502 2.47e-75 248
Msa0572930 AT5G55700.2 39.359 343 194 6 181 514 29 366 5.31e-73 237

Find 171 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGTTTGAACCACGAAAT+TGG 0.143509 4_1:-75980205 Msa0572930:CDS
GAGAAGCTGAAACTATATTT+AGG 0.201163 4_1:-75980631 Msa0572930:CDS
GAGATGGTGTCTTGACTTTC+AGG 0.209246 4_1:-75979758 Msa0572930:three_prime_UTR
AAACGCCTCTGCAAGAAATA+TGG 0.224474 4_1:-75980825 Msa0572930:CDS
ACGAAGCCATATTTAGCTTT+TGG 0.256403 4_1:+75981027 None:intergenic
GTCTTCCCAAAAGCTAAATA+TGG 0.264456 4_1:-75981033 Msa0572930:CDS
CTAAAGATTCCAACAATATC+TGG 0.289350 4_1:+75979818 None:intergenic
GTAGGATACCGCTTCCTCTA+TGG 0.302112 4_1:-75981413 Msa0572930:intron
AGTCCACATATCAGCAAAAT+TGG 0.309679 4_1:-75980600 Msa0572930:CDS
TTTAGATCAGACTGTATGTT+TGG 0.319459 4_1:-75979709 Msa0572930:three_prime_UTR
CTTGCTGCTGCTGGTGTAGA+AGG 0.323804 4_1:-75982592 Msa0572930:CDS
AAGAAACCGCGAATCGGGTT+TGG 0.326549 4_1:+75982821 None:intergenic
TTGGTTTAGAGGGGAAGATT+TGG 0.351264 4_1:-75982648 Msa0572930:CDS
AAACCTTCAGGGCTACAATC+TGG 0.351490 4_1:+75980401 None:intergenic
TTCAGTACAAAACTCTCTAA+TGG 0.356708 4_1:-75982944 Msa0572930:exon
TTGAAAGCGCTTGCTGCTGC+TGG 0.359361 4_1:-75982601 Msa0572930:CDS
TCTCAGTCTATTTCAAATAT+AGG 0.365451 4_1:+75979854 None:intergenic
CTACGCATCTTTAGTAAATA+CGG 0.369936 4_1:-75980482 Msa0572930:CDS
AAGGTGTTGTGGTGGAGATT+TGG 0.370047 4_1:-75982573 Msa0572930:CDS
AGAAACCGCGAATCGGGTTT+GGG 0.371994 4_1:+75982822 None:intergenic
CATTGTTTAAATAGAGCCTT+TGG 0.372853 4_1:-75979628 Msa0572930:three_prime_UTR
AACGACAACATCATCGCTTT+CGG 0.380681 4_1:+75982622 None:intergenic
AGAAGCTGAAACTATATTTA+GGG 0.382766 4_1:-75980630 Msa0572930:CDS
TGGGGAAATGGCGGTCCATT+TGG 0.384071 4_1:-75980791 Msa0572930:CDS
AAGATCGTGGTGAATCTCAT+AGG 0.387121 4_1:+75982729 None:intergenic
GTCTCACAAATCGGGTAAAC+CGG 0.389454 4_1:+75980180 None:intergenic
TAAATTAGCACATACCCATT+AGG 0.390694 4_1:+75982412 None:intergenic
GTTTCCTACAGAATTTAATC+TGG 0.391185 4_1:+75980130 None:intergenic
CATGTTTGAACCACGAAATT+GGG 0.391387 4_1:-75980204 Msa0572930:CDS
GTGTTGTGGTGGAGATTTGG+TGG 0.392986 4_1:-75982570 Msa0572930:CDS
CAGACATTCGTCTCACAAAT+CGG 0.392988 4_1:+75980171 None:intergenic
AGTTGTCTAAGAAAACCTTC+AGG 0.398518 4_1:+75980389 None:intergenic
TTACTAAAGATGCGTAGAAT+TGG 0.401779 4_1:+75980488 None:intergenic
CTTACGAAGTTGAATGAGAA+TGG 0.402055 4_1:+75980239 None:intergenic
CTCATTCAACTTCGTAAGAA+TGG 0.402837 4_1:-75980234 Msa0572930:CDS
AAAATCCGCATATGCTTGAA+TGG 0.412967 4_1:+75981272 None:intergenic
CGGAAGTGAGTGAAGGTGAA+AGG 0.414352 4_1:+75982850 None:intergenic
GGTGAAATCTGTTGGTTTAG+AGG 0.424555 4_1:-75982659 Msa0572930:CDS
GTTGGACGAGTTAAATCGTT+GGG 0.428358 4_1:+75982880 None:intergenic
GCCGGTGTTTGTGACACTTC+CGG 0.442531 4_1:-75982680 Msa0572930:CDS
GTGCAGATTGGCATGGGTCC+CGG 0.447828 4_1:-75981080 Msa0572930:CDS
CTCTGTGACATATCACTTGA+AGG 0.448345 4_1:-75980350 Msa0572930:CDS
ATGGCTTCGTCTCGTGAACT+TGG 0.448401 4_1:-75981014 Msa0572930:CDS
ACGGGAAGAAACCGCGAATC+GGG 0.450955 4_1:+75982816 None:intergenic
AGAGTTTCAGTGCTATGATA+AGG 0.451383 4_1:-75980991 Msa0572930:intron
CAGGGAGTGCAGATTGGCAT+GGG 0.455762 4_1:-75981086 Msa0572930:CDS
CAAAATTGGCTGCCATTCAC+TGG 0.455908 4_1:-75980586 Msa0572930:CDS
GGAAAGCGTGAATGGGGAAA+TGG 0.458343 4_1:-75980803 Msa0572930:CDS
TCAACTGATTTGGATGATGA+TGG 0.461314 4_1:-75980317 Msa0572930:CDS
TTAGAAACGAGGGTGGCTCT+TGG 0.461348 4_1:-75980727 Msa0572930:CDS
CTCTTGGATCCAGATATTGT+TGG 0.466387 4_1:-75979827 Msa0572930:three_prime_UTR
GTATCGTGAACTTGTTATGA+TGG 0.466774 4_1:-75982503 Msa0572930:CDS
TGTTGTGGTGGAGATTTGGT+GGG 0.469843 4_1:-75982569 Msa0572930:CDS
CTTCGGAGAATCACTTTACA+TGG 0.471613 4_1:-75979919 Msa0572930:three_prime_UTR
CTGTCAGAAAATGCTAAATC+CGG 0.471791 4_1:+75981366 None:intergenic
GGAAGTGAGTGAAGGTGAAA+GGG 0.473744 4_1:+75982851 None:intergenic
CTCATGGTGATGATCCTAAT+GGG 0.476669 4_1:-75982426 Msa0572930:intron
CTAAAGAATTCAGAACGCTC+AGG 0.477015 4_1:+75980746 None:intergenic
GACGGGAAGAAACCGCGAAT+CGG 0.477036 4_1:+75982815 None:intergenic
AAAACTAGTTTCAAGAGTAC+TGG 0.477347 4_1:+75980054 None:intergenic
GAAATATGGGAAAGCGTGAA+TGG 0.477853 4_1:-75980811 Msa0572930:CDS
TAGGATACCGCTTCCTCTAT+GGG 0.478776 4_1:-75981412 Msa0572930:CDS
ATCAGCCTAGGGTTTATGAT+TGG 0.480305 4_1:-75982531 Msa0572930:CDS
AACGCCTCTGCAAGAAATAT+GGG 0.480382 4_1:-75980824 Msa0572930:CDS
TAGCCGGCTGTTAACTCTGA+TGG 0.481850 4_1:+75980542 None:intergenic
AACTACGGTGGCTGCAGAAG+TGG 0.483328 4_1:-75980096 Msa0572930:CDS
GGCTCTTGGAACATGCCATA+TGG 0.483956 4_1:-75980713 Msa0572930:CDS
TTCAAGAGTACTGGTATAGC+TGG 0.484218 4_1:+75980063 None:intergenic
GTCAAACTTCCAGTGCCAAA+TGG 0.486962 4_1:+75980776 None:intergenic
GTGAAATCTGTTGGTTTAGA+GGG 0.488210 4_1:-75982658 Msa0572930:CDS
ACGGAATATAAATGGACCTA+TGG 0.489361 4_1:+75979665 None:intergenic
ACTCATGGTGATGATCCTAA+TGG 0.489575 4_1:-75982427 Msa0572930:CDS
CGAGATTGAACCGCCGGCAT+CGG 0.493628 4_1:+75982774 None:intergenic
GCAGGGAGTGCAGATTGGCA+TGG 0.495639 4_1:-75981087 Msa0572930:intron
AAATATGGGAAAGCGTGAAT+GGG 0.496794 4_1:-75980810 Msa0572930:CDS
CTGCACTCGTTCACAGGGTG+TGG 0.496865 4_1:+75983025 None:intergenic
GAGGAACTGCACTCGTTCAC+AGG 0.497369 4_1:+75983019 None:intergenic
GCATATCTGAGTACCATTCA+AGG 0.499815 4_1:+75980681 None:intergenic
GGTTCAATCTCGCCGGAAAA+CGG 0.500082 4_1:-75982763 Msa0572930:CDS
TATTGTCTATTCTGTGGAGA+TGG 0.500175 4_1:-75979774 Msa0572930:three_prime_UTR
GGCTGTTAACTCTGATGGAT+GGG 0.500887 4_1:+75980547 None:intergenic
AATATTGAATACATTTCCCT+CGG 0.508318 4_1:-75981330 Msa0572930:CDS
AAATCCGCATATGCTTGAAT+GGG 0.510254 4_1:+75981273 None:intergenic
GTTTAGAGGGGAAGATTTGG+AGG 0.510688 4_1:-75982645 Msa0572930:CDS
AACCTTCAGGGCTACAATCT+GGG 0.510835 4_1:+75980402 None:intergenic
TGAGATGAAGGAAGGTGAGA+AGG 0.511131 4_1:+75982906 None:intergenic
CATACTTACAACATACTGTA+AGG 0.511164 4_1:+75979597 None:intergenic
AGACATTCGTCTCACAAATC+GGG 0.511537 4_1:+75980172 None:intergenic
GTTGTCTAAGAAAACCTTCA+GGG 0.513719 4_1:+75980390 None:intergenic
TTACGAAGTTGAATGAGAAT+GGG 0.514956 4_1:+75980240 None:intergenic
CGGCTGTTAACTCTGATGGA+TGG 0.518375 4_1:+75980546 None:intergenic
GTTATGATGGCTTGCATGTG+TGG 0.519162 4_1:-75982490 Msa0572930:CDS
TTTCATCAACATGGCACTCA+TGG 0.519586 4_1:-75982442 Msa0572930:CDS
GGATTTAGAAGAGTTGAGAC+GGG 0.522871 4_1:+75982798 None:intergenic
TGATGAGATACAGAAAGATC+CGG 0.523575 4_1:-75981385 Msa0572930:CDS
TTCCGGCGAGATTGAACCGC+CGG 0.526970 4_1:+75982768 None:intergenic
AACCCAGATTGTAGCCCTGA+AGG 0.531011 4_1:-75980404 Msa0572930:CDS
GTTAAAAGTATTATAATAGC+CGG 0.531118 4_1:+75980526 None:intergenic
TTTGGTGGGGTGTTGTTGAA+AGG 0.531856 4_1:-75982555 Msa0572930:CDS
TCTTCTAAATCCTCCGATGC+CGG 0.533038 4_1:-75982787 Msa0572930:CDS
CTTTCCCATATTTCTTGCAG+AGG 0.533938 4_1:+75980820 None:intergenic
TCTCCGCAGCGTCGGAGACG+TGG 0.545759 4_1:-75982706 Msa0572930:CDS
GGAGAACGTCCACGCAGCAC+AGG 0.549122 4_1:+75981294 None:intergenic
TTGTTGAAAGGAATCAGCCT+AGG 0.551424 4_1:-75982543 Msa0572930:CDS
CGAGCCAGATTAAATTCTGT+AGG 0.552381 4_1:-75980134 Msa0572930:CDS
AATAGACTGAGATACACTCT+TGG 0.552577 4_1:-75979843 Msa0572930:three_prime_UTR
GTAATGATAAAGCCAAGGTA+TGG 0.555777 4_1:+75981222 None:intergenic
GCGTCGGAGACGTGGATCGC+CGG 0.556399 4_1:-75982698 Msa0572930:CDS
TTGAACCACGAAATTGGGAC+CGG 0.557825 4_1:-75980199 Msa0572930:CDS
TTTGTGAGACGAATGTCTGC+TGG 0.561115 4_1:-75980167 Msa0572930:CDS
AGATCGTGGTGAATCTCATA+GGG 0.561305 4_1:+75982730 None:intergenic
TCAAGCACCCATAGAGGAAG+CGG 0.562053 4_1:+75981405 None:intergenic
AAATGAGTGTAAATTGCCAT+AGG 0.563765 4_1:-75979681 Msa0572930:three_prime_UTR
ACACTTCCGGTGAAATCTGT+TGG 0.566616 4_1:-75982667 Msa0572930:CDS
GGGATCAAGTGTGTGACAAA+TGG 0.569186 4_1:+75979548 None:intergenic
AAGGTGAAAGGGAGACGAGT+TGG 0.570462 4_1:+75982862 None:intergenic
AATGGCGGTCCATTTGGCAC+TGG 0.570935 4_1:-75980785 Msa0572930:CDS
ATCTCATCAAGCACCCATAG+AGG 0.572697 4_1:+75981399 None:intergenic
GTTGTGGTGGAGATTTGGTG+GGG 0.574564 4_1:-75982568 Msa0572930:CDS
GTAAACCGGTCCCAATTTCG+TGG 0.574792 4_1:+75980194 None:intergenic
GATTGAACCGCCGGCATCGG+AGG 0.577246 4_1:+75982777 None:intergenic
ATTTCACAACACTAAAACGA+TGG 0.577799 4_1:+75979995 None:intergenic
TGCCGGCGGTTCAATCTCGC+CGG 0.579977 4_1:-75982770 Msa0572930:CDS
ACTACGGTGGCTGCAGAAGT+GGG 0.580319 4_1:-75980095 Msa0572930:CDS
AGGATTTAGAAGAGTTGAGA+CGG 0.586326 4_1:+75982797 None:intergenic
ATATTGAATACATTTCCCTC+GGG 0.586433 4_1:-75981329 Msa0572930:CDS
AAACCTACAATTGAAAACTA+CGG 0.587152 4_1:-75980111 Msa0572930:CDS
TCTAAATCCTCCGATGCCGG+CGG 0.588162 4_1:-75982784 Msa0572930:CDS
TCAGATATGCTGCTACTGCA+TGG 0.589063 4_1:-75980668 Msa0572930:CDS
CTAGGGTTTATGATTGGCGA+GGG 0.590762 4_1:-75982525 Msa0572930:CDS
AATATGGGAAAGCGTGAATG+GGG 0.590838 4_1:-75980809 Msa0572930:CDS
AGTTGGACGAGTTAAATCGT+TGG 0.595018 4_1:+75982879 None:intergenic
CATCCATCAGAGTTAACAGC+CGG 0.595227 4_1:-75980545 Msa0572930:CDS
TTCTCCCATTCAAGCATATG+CGG 0.599622 4_1:-75981277 Msa0572930:CDS
ATTTCAAATATAGGTACAAG+TGG 0.600389 4_1:+75979863 None:intergenic
AGGATATCTTAGTTCACCAC+CGG 0.601710 4_1:+75981061 None:intergenic
TGTTGAAAGGAATCAGCCTA+GGG 0.602886 4_1:-75982542 Msa0572930:CDS
CCTCGCCAATCATAAACCCT+AGG 0.603152 4_1:+75982526 None:intergenic
TGCTGGTGTAGAAGGTGTTG+TGG 0.603246 4_1:-75982584 Msa0572930:CDS
CCTAGGGTTTATGATTGGCG+AGG 0.607719 4_1:-75982526 Msa0572930:CDS
GTTCTTGCATTTCATCAACA+TGG 0.608340 4_1:-75982451 Msa0572930:CDS
TTCTGAATTCTTTAGAAACG+AGG 0.609976 4_1:-75980738 Msa0572930:CDS
TGTGACATAGTGCCAGTGAA+TGG 0.610416 4_1:+75980574 None:intergenic
ACCGGAAGTGTCACAAACAC+CGG 0.613731 4_1:+75982679 None:intergenic
TCTAAACCAACAGATTTCAC+CGG 0.614796 4_1:+75982661 None:intergenic
AGGAACTGCACTCGTTCACA+GGG 0.619905 4_1:+75983020 None:intergenic
TCTGAATTCTTTAGAAACGA+GGG 0.620733 4_1:-75980737 Msa0572930:CDS
TATGCATCATTAAGTTACAC+GGG 0.621214 4_1:+75979734 None:intergenic
TGGACGAGTTAAATCGTTGG+GGG 0.624921 4_1:+75982882 None:intergenic
TTACTGTAATGATAAAGCCA+AGG 0.630974 4_1:+75981217 None:intergenic
GAAGCTGAAACTATATTTAG+GGG 0.631641 4_1:-75980629 Msa0572930:CDS
TGAAATCTGTTGGTTTAGAG+GGG 0.634831 4_1:-75982657 Msa0572930:CDS
ATATGCATCATTAAGTTACA+CGG 0.635815 4_1:+75979733 None:intergenic
AAGCGTGAATGGGGAAATGG+CGG 0.635989 4_1:-75980800 Msa0572930:CDS
TTGGACGAGTTAAATCGTTG+GGG 0.646278 4_1:+75982881 None:intergenic
GACGCTGCGGAGAAAGATCG+TGG 0.646699 4_1:+75982716 None:intergenic
ACGATCTTTCTCCGCAGCGT+CGG 0.649813 4_1:-75982714 Msa0572930:CDS
TCAATCTCGCCGGAAAACGG+CGG 0.651635 4_1:-75982760 Msa0572930:CDS
GGATGATGATGGATTCACTC+AGG 0.656015 4_1:-75980306 Msa0572930:CDS
GATATTCTTCCTGTGCTGCG+TGG 0.661803 4_1:-75981303 Msa0572930:CDS
CAGGAAGAATATCACACCCG+AGG 0.671745 4_1:+75981313 None:intergenic
TGGTGTAGAAGGTGTTGTGG+TGG 0.672535 4_1:-75982581 Msa0572930:CDS
GAATTCTTTAGAAACGAGGG+TGG 0.674880 4_1:-75980734 Msa0572930:CDS
GGATATCTTAGTTCACCACC+GGG 0.676959 4_1:+75981062 None:intergenic
AGGAAGAATATCACACCCGA+GGG 0.680047 4_1:+75981314 None:intergenic
CTGTAAGGTACAGATGCCAA+AGG 0.682094 4_1:+75979612 None:intergenic
GATCCACGTCTCCGACGCTG+CGG 0.684486 4_1:+75982703 None:intergenic
TAGAAGAGTACAGTTATGTG+AGG 0.694259 4_1:+75983000 None:intergenic
CAGATTGGCATGGGTCCCGG+TGG 0.697383 4_1:-75981077 Msa0572930:CDS
CCTACAATTGAAAACTACGG+TGG 0.700747 4_1:-75980108 Msa0572930:CDS
ATGCATCATTAAGTTACACG+GGG 0.754672 4_1:+75979735 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTCATAAATTTATTTA+GGG + chr4_1:75980340-75980359 None:intergenic 10.0%
!! TAAACTTCATAAATTTATTT+AGG + chr4_1:75980341-75980360 None:intergenic 10.0%
!! TTGTTGAATAAAAAACTTAT+AGG + chr4_1:75981038-75981057 None:intergenic 15.0%
!! ATTATTCAAAATAAACCAAA+TGG + chr4_1:75981103-75981122 None:intergenic 15.0%
!!! TGAATAATTACTATTTTTGT+AGG - chr4_1:75981115-75981134 Msa0572930:intron 15.0%
!!! CTATTATAATACTTTTAACA+GGG - chr4_1:75982085-75982104 Msa0572930:intron 15.0%
!!! CAGTTTAATTGAATTTTGAA+TGG - chr4_1:75980291-75980310 Msa0572930:CDS 20.0%
!!! GTTTTAAAAAGATAAGAGAA+AGG - chr4_1:75980629-75980648 Msa0572930:CDS 20.0%
!! ATACAATTACATTCCTATTT+AGG - chr4_1:75980738-75980757 Msa0572930:CDS 20.0%
!! CTCAAAAATTGAATATTCAT+TGG + chr4_1:75981452-75981471 None:intergenic 20.0%
!!! GTTAAAAGTATTATAATAGC+CGG + chr4_1:75982084-75982103 None:intergenic 20.0%
!!! GCTATTATAATACTTTTAAC+AGG - chr4_1:75982084-75982103 Msa0572930:intron 20.0%
!!! TCAAAATTTTTCAACTGATT+TGG - chr4_1:75982280-75982299 Msa0572930:intron 20.0%
!!! TCTTATTCTTTTATTGCTTT+TGG - chr4_1:75982652-75982671 Msa0572930:CDS 20.0%
!!! CTTATTCTTTTATTGCTTTT+GGG - chr4_1:75982653-75982672 Msa0572930:CDS 20.0%
!! AACAAAAAACGGAATATAAA+TGG + chr4_1:75982953-75982972 None:intergenic 20.0%
!! CAATGTTACAAAACAAAAAA+CGG + chr4_1:75982964-75982983 None:intergenic 20.0%
! CCTATCAATAAACACATTAA+AGG + chr4_1:75980240-75980259 None:intergenic 25.0%
! CCTTTAATGTGTTTATTGAT+AGG - chr4_1:75980237-75980256 Msa0572930:CDS 25.0%
! ATGATTATGTCAAACTCATT+TGG - chr4_1:75980439-75980458 Msa0572930:CDS 25.0%
!!! TCTTTACTTTTTCTAACGAA+GGG + chr4_1:75980572-75980591 None:intergenic 25.0%
!!! TTCTTTACTTTTTCTAACGA+AGG + chr4_1:75980573-75980592 None:intergenic 25.0%
! AAAGAAAATGTAATGCAAGT+AGG - chr4_1:75980587-75980606 Msa0572930:CDS 25.0%
! AATATCAATATCTGAACAGT+TGG + chr4_1:75980680-75980699 None:intergenic 25.0%
! TTAAGCGTATAAAACACTTT+AGG - chr4_1:75980825-75980844 Msa0572930:CDS 25.0%
! TGTGATTGTAATTTAGATGT+TGG - chr4_1:75980925-75980944 Msa0572930:intron 25.0%
! ATTGTAATTTAGATGTTGGA+TGG - chr4_1:75980929-75980948 Msa0572930:intron 25.0%
! AATATTGAATACATTTCCCT+CGG - chr4_1:75981277-75981296 Msa0572930:CDS 25.0%
! AAAATTTATTGCTGTGTTCT+AGG - chr4_1:75981646-75981665 Msa0572930:intron 25.0%
!! AACTTTCCTTTTCTATTGTT+TGG - chr4_1:75981732-75981751 Msa0572930:intron 25.0%
! TCAAGGAAAAATTTACCATA+TGG + chr4_1:75981912-75981931 None:intergenic 25.0%
!! ATGGTAAATTTTTCCTTGAA+TGG - chr4_1:75981913-75981932 Msa0572930:intron 25.0%
! AGAAGCTGAAACTATATTTA+GGG - chr4_1:75981977-75981996 Msa0572930:intron 25.0%
!! TATAATACTTTTAACAGGGA+TGG - chr4_1:75982089-75982108 Msa0572930:intron 25.0%
!! ATGTCAAAATTTTACTCAGA+TGG - chr4_1:75982332-75982351 Msa0572930:intron 25.0%
!! TGTCAAAATTTTACTCAGAT+GGG - chr4_1:75982333-75982352 Msa0572930:intron 25.0%
! AAACCTACAATTGAAAACTA+CGG - chr4_1:75982496-75982515 Msa0572930:CDS 25.0%
! ATTTCAAATATAGGTACAAG+TGG + chr4_1:75982747-75982766 None:intergenic 25.0%
! TCTCAGTCTATTTCAAATAT+AGG + chr4_1:75982756-75982775 None:intergenic 25.0%
! CACAGAATAGACAATAAAAA+AGG + chr4_1:75982829-75982848 None:intergenic 25.0%
!!! CTTTTTTATTGTCTATTCTG+TGG - chr4_1:75982827-75982846 Msa0572930:CDS 25.0%
! ATATGCATCATTAAGTTACA+CGG + chr4_1:75982877-75982896 None:intergenic 25.0%
TTCAGTACAAAACTCTCTAA+TGG - chr4_1:75979663-75979682 Msa0572930:three_prime_UTR 30.0%
TAAATTAGCACATACCCATT+AGG + chr4_1:75980198-75980217 None:intergenic 30.0%
ATGAAAGTTTGACAAAACCA+CGG - chr4_1:75980407-75980426 Msa0572930:CDS 30.0%
ATTATGTCAAACTCATTTGG+CGG - chr4_1:75980442-75980461 Msa0572930:CDS 30.0%
AAAATGTAATGCAAGTAGGT+AGG - chr4_1:75980591-75980610 Msa0572930:CDS 30.0%
!! AAGATTTGCTCCTATCTTTT+AGG - chr4_1:75980709-75980728 Msa0572930:CDS 30.0%
GTATCATGATCCTAAAAGAT+AGG + chr4_1:75980722-75980741 None:intergenic 30.0%
ACATGAGATGTAACCTAAAT+AGG + chr4_1:75980754-75980773 None:intergenic 30.0%
CTTCTCACTCGATAATAAAA+AGG + chr4_1:75980796-75980815 None:intergenic 30.0%
! TCCTTGTAGTTCATTTTACT+TGG - chr4_1:75980874-75980893 Msa0572930:intron 30.0%
ACCAAGTAAAATGAACTACA+AGG + chr4_1:75980878-75980897 None:intergenic 30.0%
! TTGTAGTTCATTTTACTTGG+TGG - chr4_1:75980877-75980896 Msa0572930:intron 30.0%
! TGTAGTTCATTTTACTTGGT+GGG - chr4_1:75980878-75980897 Msa0572930:intron 30.0%
!! TAACGCATGATTTTTGTTGT+TGG - chr4_1:75980902-75980921 Msa0572930:intron 30.0%
!! TGTTTTGAGTATAGTCCATT+TGG - chr4_1:75981085-75981104 Msa0572930:CDS 30.0%
ATATTGAATACATTTCCCTC+GGG - chr4_1:75981278-75981297 Msa0572930:CDS 30.0%
! GGATTTTATGAGGGATTTTA+GGG - chr4_1:75981351-75981370 Msa0572930:CDS 30.0%
TTACTGTAATGATAAAGCCA+AGG + chr4_1:75981393-75981412 None:intergenic 30.0%
!! TTGGCTTTATCATTACAGTA+AGG - chr4_1:75981392-75981411 Msa0572930:CDS 30.0%
ATCATTACAGTAAGGTTCTA+TGG - chr4_1:75981400-75981419 Msa0572930:CDS 30.0%
CTATGGCTTATGATGATTTA+AGG - chr4_1:75981417-75981436 Msa0572930:intron 30.0%
! TTCTGAATTCTTTAGAAACG+AGG - chr4_1:75981869-75981888 Msa0572930:intron 30.0%
! TCTGAATTCTTTAGAAACGA+GGG - chr4_1:75981870-75981889 Msa0572930:intron 30.0%
GAGAAGCTGAAACTATATTT+AGG - chr4_1:75981976-75981995 Msa0572930:intron 30.0%
GAAGCTGAAACTATATTTAG+GGG - chr4_1:75981978-75981997 Msa0572930:intron 30.0%
TTACTAAAGATGCGTAGAAT+TGG + chr4_1:75982122-75982141 None:intergenic 30.0%
CTACGCATCTTTAGTAAATA+CGG - chr4_1:75982125-75982144 Msa0572930:intron 30.0%
! TTTTCTTAGACAACTTTTGC+TGG - chr4_1:75982226-75982245 Msa0572930:intron 30.0%
TTACGAAGTTGAATGAGAAT+GGG + chr4_1:75982370-75982389 None:intergenic 30.0%
GTTTCCTACAGAATTTAATC+TGG + chr4_1:75982480-75982499 None:intergenic 30.0%
! AAAACTAGTTTCAAGAGTAC+TGG + chr4_1:75982556-75982575 None:intergenic 30.0%
ATTTCACAACACTAAAACGA+TGG + chr4_1:75982615-75982634 None:intergenic 30.0%
AACCATATAAAAACTCTGGA+GGG + chr4_1:75982714-75982733 None:intergenic 30.0%
CTAAAGATTCCAACAATATC+TGG + chr4_1:75982792-75982811 None:intergenic 30.0%
TATGCATCATTAAGTTACAC+GGG + chr4_1:75982876-75982895 None:intergenic 30.0%
TTTAGATCAGACTGTATGTT+TGG - chr4_1:75982898-75982917 Msa0572930:CDS 30.0%
AAATGAGTGTAAATTGCCAT+AGG - chr4_1:75982926-75982945 Msa0572930:CDS 30.0%
CATTGTTTAAATAGAGCCTT+TGG - chr4_1:75982979-75982998 Msa0572930:five_prime_UTR 30.0%
CATACTTACAACATACTGTA+AGG + chr4_1:75983013-75983032 None:intergenic 30.0%
! TAGAAGAGTACAGTTATGTG+AGG + chr4_1:75979610-75979629 None:intergenic 35.0%
AGGATTTAGAAGAGTTGAGA+CGG + chr4_1:75979813-75979832 None:intergenic 35.0%
TCTAAACCAACAGATTTCAC+CGG + chr4_1:75979949-75979968 None:intergenic 35.0%
!! GTGAAATCTGTTGGTTTAGA+GGG - chr4_1:75979949-75979968 Msa0572930:three_prime_UTR 35.0%
!! TGAAATCTGTTGGTTTAGAG+GGG - chr4_1:75979950-75979969 Msa0572930:three_prime_UTR 35.0%
!! GTATCGTGAACTTGTTATGA+TGG - chr4_1:75980104-75980123 Msa0572930:CDS 35.0%
GTTCTTGCATTTCATCAACA+TGG - chr4_1:75980156-75980175 Msa0572930:CDS 35.0%
! TCACGTAGCTTTTGTAGTAT+CGG + chr4_1:75980377-75980396 None:intergenic 35.0%
TCAATATCTGAACAGTTGGT+TGG + chr4_1:75980676-75980695 None:intergenic 35.0%
AAGGATGAAACAATGGCAAT+GGG + chr4_1:75980859-75980878 None:intergenic 35.0%
GAACTACAAGGATGAAACAA+TGG + chr4_1:75980866-75980885 None:intergenic 35.0%
! AATAGTGTATGCTGATAGTG+TGG - chr4_1:75980995-75981014 Msa0572930:CDS 35.0%
! ATAGTGTATGCTGATAGTGT+GGG - chr4_1:75980996-75981015 Msa0572930:CDS 35.0%
AATGTCTGAACATTCTACCT+GGG - chr4_1:75981056-75981075 Msa0572930:CDS 35.0%
TGATGAGATACAGAAAGATC+CGG - chr4_1:75981222-75981241 Msa0572930:CDS 35.0%
CTGTCAGAAAATGCTAAATC+CGG + chr4_1:75981244-75981263 None:intergenic 35.0%
! TTAGCATTTTCTGACAGGTT+TGG - chr4_1:75981247-75981266 Msa0572930:CDS 35.0%
AAATCCGCATATGCTTGAAT+GGG + chr4_1:75981337-75981356 None:intergenic 35.0%
AAAATCCGCATATGCTTGAA+TGG + chr4_1:75981338-75981357 None:intergenic 35.0%
! AAGCATATGCGGATTTTATG+AGG - chr4_1:75981341-75981360 Msa0572930:CDS 35.0%
! AGCATATGCGGATTTTATGA+GGG - chr4_1:75981342-75981361 Msa0572930:CDS 35.0%
! CGGATTTTATGAGGGATTTT+AGG - chr4_1:75981350-75981369 Msa0572930:CDS 35.0%
GTAATGATAAAGCCAAGGTA+TGG + chr4_1:75981388-75981407 None:intergenic 35.0%
! TGTAACTCTGTTCATTTTGC+AGG - chr4_1:75981502-75981521 Msa0572930:intron 35.0%
! GTAACTCTGTTCATTTTGCA+GGG - chr4_1:75981503-75981522 Msa0572930:intron 35.0%
GTCTTCCCAAAAGCTAAATA+TGG - chr4_1:75981574-75981593 Msa0572930:intron 35.0%
!!! CGAAGCCATATTTAGCTTTT+GGG + chr4_1:75981582-75981601 None:intergenic 35.0%
!!! ACGAAGCCATATTTAGCTTT+TGG + chr4_1:75981583-75981602 None:intergenic 35.0%
AGAGTTTCAGTGCTATGATA+AGG - chr4_1:75981616-75981635 Msa0572930:intron 35.0%
TTTCAGTGCTATGATAAGGT+TGG - chr4_1:75981620-75981639 Msa0572930:intron 35.0%
AAGTGGCCAAACAATAGAAA+AGG + chr4_1:75981741-75981760 None:intergenic 35.0%
TTAGAGAAGCAAGCATATAC+TGG + chr4_1:75981764-75981783 None:intergenic 35.0%
! AAATATGGGAAAGCGTGAAT+GGG - chr4_1:75981797-75981816 Msa0572930:intron 35.0%
AGTCCACATATCAGCAAAAT+TGG - chr4_1:75982007-75982026 Msa0572930:intron 35.0%
GTTGTCTAAGAAAACCTTCA+GGG + chr4_1:75982220-75982239 None:intergenic 35.0%
AGTTGTCTAAGAAAACCTTC+AGG + chr4_1:75982221-75982240 None:intergenic 35.0%
!! TCAACTGATTTGGATGATGA+TGG - chr4_1:75982290-75982309 Msa0572930:intron 35.0%
CTTACGAAGTTGAATGAGAA+TGG + chr4_1:75982371-75982390 None:intergenic 35.0%
CTCATTCAACTTCGTAAGAA+TGG - chr4_1:75982373-75982392 Msa0572930:intron 35.0%
ACATGTTTGAACCACGAAAT+TGG - chr4_1:75982402-75982421 Msa0572930:intron 35.0%
CATGTTTGAACCACGAAATT+GGG - chr4_1:75982403-75982422 Msa0572930:intron 35.0%
! TTGGGCAACTTTTACATCTT+CGG - chr4_1:75982671-75982690 Msa0572930:CDS 35.0%
CAACCATATAAAAACTCTGG+AGG + chr4_1:75982715-75982734 None:intergenic 35.0%
! CTCCAGAGTTTTTATATGGT+TGG - chr4_1:75982713-75982732 Msa0572930:CDS 35.0%
TGCCAACCATATAAAAACTC+TGG + chr4_1:75982718-75982737 None:intergenic 35.0%
AATAGACTGAGATACACTCT+TGG - chr4_1:75982764-75982783 Msa0572930:CDS 35.0%
TATTGTCTATTCTGTGGAGA+TGG - chr4_1:75982833-75982852 Msa0572930:CDS 35.0%
ATGCATCATTAAGTTACACG+GGG + chr4_1:75982875-75982894 None:intergenic 35.0%
ACGGAATATAAATGGACCTA+TGG + chr4_1:75982945-75982964 None:intergenic 35.0%
TTGGACGAGTTAAATCGTTG+GGG + chr4_1:75979729-75979748 None:intergenic 40.0%
GTTGGACGAGTTAAATCGTT+GGG + chr4_1:75979730-75979749 None:intergenic 40.0%
AGTTGGACGAGTTAAATCGT+TGG + chr4_1:75979731-75979750 None:intergenic 40.0%
GGATTTAGAAGAGTTGAGAC+GGG + chr4_1:75979812-75979831 None:intergenic 40.0%
AGATCGTGGTGAATCTCATA+GGG + chr4_1:75979880-75979899 None:intergenic 40.0%
AAGATCGTGGTGAATCTCAT+AGG + chr4_1:75979881-75979900 None:intergenic 40.0%
!! GGTGAAATCTGTTGGTTTAG+AGG - chr4_1:75979948-75979967 Msa0572930:three_prime_UTR 40.0%
TTGGTTTAGAGGGGAAGATT+TGG - chr4_1:75979959-75979978 Msa0572930:three_prime_UTR 40.0%
AACGACAACATCATCGCTTT+CGG + chr4_1:75979988-75980007 None:intergenic 40.0%
TTGTTGAAAGGAATCAGCCT+AGG - chr4_1:75980064-75980083 Msa0572930:CDS 40.0%
TGTTGAAAGGAATCAGCCTA+GGG - chr4_1:75980065-75980084 Msa0572930:CDS 40.0%
ATCAGCCTAGGGTTTATGAT+TGG - chr4_1:75980076-75980095 Msa0572930:CDS 40.0%
TTTCATCAACATGGCACTCA+TGG - chr4_1:75980165-75980184 Msa0572930:CDS 40.0%
! ACTCATGGTGATGATCCTAA+TGG - chr4_1:75980180-75980199 Msa0572930:CDS 40.0%
! CTCATGGTGATGATCCTAAT+GGG - chr4_1:75980181-75980200 Msa0572930:CDS 40.0%
CTACAAAAGCTACGTGAAGT+CGG - chr4_1:75980380-75980399 Msa0572930:CDS 40.0%
AAAGTTTGACAAAACCACGG+TGG - chr4_1:75980410-75980429 Msa0572930:CDS 40.0%
! AGTTGATTCAACCTATGCTG+TGG - chr4_1:75980524-75980543 Msa0572930:CDS 40.0%
TGCAAGTAGGTAGGTATCTA+AGG - chr4_1:75980600-75980619 Msa0572930:CDS 40.0%
! AGGTAGGTATCTAAGGTTTG+TGG - chr4_1:75980607-75980626 Msa0572930:CDS 40.0%
CAAGGATGAAACAATGGCAA+TGG + chr4_1:75980860-75980879 None:intergenic 40.0%
CAATGTCTGAACATTCTACC+TGG - chr4_1:75981055-75981074 Msa0572930:CDS 40.0%
TACTCAAAACAAGACTACCC+AGG + chr4_1:75981076-75981095 None:intergenic 40.0%
! CGGATTTAGCATTTTCTGAC+AGG - chr4_1:75981242-75981261 Msa0572930:CDS 40.0%
TTCTCCCATTCAAGCATATG+CGG - chr4_1:75981330-75981349 Msa0572930:CDS 40.0%
!! GGGATTTTAGGGACACTTTT+AGG - chr4_1:75981362-75981381 Msa0572930:CDS 40.0%
AGGATATCTTAGTTCACCAC+CGG + chr4_1:75981549-75981568 None:intergenic 40.0%
!! AGCTTTTGGGAAGACAATGA+AGG + chr4_1:75981569-75981588 None:intergenic 40.0%
!! ATTGCTGTGTTCTAGGAAAC+TGG - chr4_1:75981653-75981672 Msa0572930:intron 40.0%
AAGCAAGCATATACTGGAAG+TGG + chr4_1:75981758-75981777 None:intergenic 40.0%
AAACGCCTCTGCAAGAAATA+TGG - chr4_1:75981782-75981801 Msa0572930:intron 40.0%
AACGCCTCTGCAAGAAATAT+GGG - chr4_1:75981783-75981802 Msa0572930:intron 40.0%
CTTTCCCATATTTCTTGCAG+AGG + chr4_1:75981790-75981809 None:intergenic 40.0%
! GAAATATGGGAAAGCGTGAA+TGG - chr4_1:75981796-75981815 Msa0572930:intron 40.0%
! AATATGGGAAAGCGTGAATG+GGG - chr4_1:75981798-75981817 Msa0572930:intron 40.0%
CTAAAGAATTCAGAACGCTC+AGG + chr4_1:75981864-75981883 None:intergenic 40.0%
! GAATTCTTTAGAAACGAGGG+TGG - chr4_1:75981873-75981892 Msa0572930:intron 40.0%
GCATATCTGAGTACCATTCA+AGG + chr4_1:75981929-75981948 None:intergenic 40.0%
! CAGCCAATTTTGCTGATATG+TGG + chr4_1:75982013-75982032 None:intergenic 40.0%
CTCTGTGACATATCACTTGA+AGG - chr4_1:75982257-75982276 Msa0572930:intron 40.0%
AGACATTCGTCTCACAAATC+GGG + chr4_1:75982438-75982457 None:intergenic 40.0%
CAGACATTCGTCTCACAAAT+CGG + chr4_1:75982439-75982458 None:intergenic 40.0%
CGAGCCAGATTAAATTCTGT+AGG - chr4_1:75982473-75982492 Msa0572930:CDS 40.0%
! CCACCGTAGTTTTCAATTGT+AGG + chr4_1:75982502-75982521 None:intergenic 40.0%
CCTACAATTGAAAACTACGG+TGG - chr4_1:75982499-75982518 Msa0572930:CDS 40.0%
!! TTCAAGAGTACTGGTATAGC+TGG + chr4_1:75982547-75982566 None:intergenic 40.0%
CTTCGGAGAATCACTTTACA+TGG - chr4_1:75982688-75982707 Msa0572930:CDS 40.0%
CTCTTGGATCCAGATATTGT+TGG - chr4_1:75982780-75982799 Msa0572930:CDS 40.0%
TGAGATGAAGGAAGGTGAGA+AGG + chr4_1:75979704-75979723 None:intergenic 45.0%
TGGACGAGTTAAATCGTTGG+GGG + chr4_1:75979728-75979747 None:intergenic 45.0%
GGAAGTGAGTGAAGGTGAAA+GGG + chr4_1:75979759-75979778 None:intergenic 45.0%
!! GGTTTTTCGGAAGTGAGTGA+AGG + chr4_1:75979767-75979786 None:intergenic 45.0%
!! CGAATCGGGTTTGGGTTTTT+CGG + chr4_1:75979780-75979799 None:intergenic 45.0%
! AAAAACCCAAACCCGATTCG+CGG - chr4_1:75979780-75979799 Msa0572930:three_prime_UTR 45.0%
TCTTCTAAATCCTCCGATGC+CGG - chr4_1:75979820-75979839 Msa0572930:three_prime_UTR 45.0%
ACACTTCCGGTGAAATCTGT+TGG - chr4_1:75979940-75979959 Msa0572930:three_prime_UTR 45.0%
GTTTAGAGGGGAAGATTTGG+AGG - chr4_1:75979962-75979981 Msa0572930:three_prime_UTR 45.0%
!! AAGGTGTTGTGGTGGAGATT+TGG - chr4_1:75980034-75980053 Msa0572930:three_prime_UTR 45.0%
! TGTTGTGGTGGAGATTTGGT+GGG - chr4_1:75980038-75980057 Msa0572930:three_prime_UTR 45.0%
!! TTTGGTGGGGTGTTGTTGAA+AGG - chr4_1:75980052-75980071 Msa0572930:exon 45.0%
CTAGGGTTTATGATTGGCGA+GGG - chr4_1:75980082-75980101 Msa0572930:CDS 45.0%
! GTTATGATGGCTTGCATGTG+TGG - chr4_1:75980117-75980136 Msa0572930:CDS 45.0%
ATAATCATTGTGTGCCACCG+TGG + chr4_1:75980427-75980446 None:intergenic 45.0%
TTACCTTCAAGCCACAGCAT+AGG + chr4_1:75980538-75980557 None:intergenic 45.0%
CATAAGCCTCAGACTCTAGA+AGG - chr4_1:75981157-75981176 Msa0572930:intron 45.0%
AAGGTTGTCCCTTCTTGTGT+AGG - chr4_1:75981176-75981195 Msa0572930:intron 45.0%
AGCGGTATCCTACACAAGAA+GGG + chr4_1:75981187-75981206 None:intergenic 45.0%
AAGCGGTATCCTACACAAGA+AGG + chr4_1:75981188-75981207 None:intergenic 45.0%
TAGGATACCGCTTCCTCTAT+GGG - chr4_1:75981195-75981214 Msa0572930:intron 45.0%
ATCTCATCAAGCACCCATAG+AGG + chr4_1:75981211-75981230 None:intergenic 45.0%
AGGAAGAATATCACACCCGA+GGG + chr4_1:75981296-75981315 None:intergenic 45.0%
! GACACTTTTAGGCCATACCT+TGG - chr4_1:75981373-75981392 Msa0572930:CDS 45.0%
!! ATTTTGCAGGGAGTGCAGAT+TGG - chr4_1:75981515-75981534 Msa0572930:intron 45.0%
GGATATCTTAGTTCACCACC+GGG + chr4_1:75981548-75981567 None:intergenic 45.0%
GTCAAACTTCCAGTGCCAAA+TGG + chr4_1:75981834-75981853 None:intergenic 45.0%
TCAGATATGCTGCTACTGCA+TGG - chr4_1:75981939-75981958 Msa0572930:intron 45.0%
CAAAATTGGCTGCCATTCAC+TGG - chr4_1:75982021-75982040 Msa0572930:intron 45.0%
TGTGACATAGTGCCAGTGAA+TGG + chr4_1:75982036-75982055 None:intergenic 45.0%
! GGCTGTTAACTCTGATGGAT+GGG + chr4_1:75982063-75982082 None:intergenic 45.0%
CATCCATCAGAGTTAACAGC+CGG - chr4_1:75982062-75982081 Msa0572930:intron 45.0%
AACCTTCAGGGCTACAATCT+GGG + chr4_1:75982208-75982227 None:intergenic 45.0%
AAACCTTCAGGGCTACAATC+TGG + chr4_1:75982209-75982228 None:intergenic 45.0%
!! GGATGATGATGGATTCACTC+AGG - chr4_1:75982301-75982320 Msa0572930:intron 45.0%
TTGAACCACGAAATTGGGAC+CGG - chr4_1:75982408-75982427 Msa0572930:intron 45.0%
GTCTCACAAATCGGGTAAAC+CGG + chr4_1:75982430-75982449 None:intergenic 45.0%
TTTGTGAGACGAATGTCTGC+TGG - chr4_1:75982440-75982459 Msa0572930:CDS 45.0%
! GGCCCTCCAGAGTTTTTATA+TGG - chr4_1:75982709-75982728 Msa0572930:CDS 45.0%
GAGATGGTGTCTTGACTTTC+AGG - chr4_1:75982849-75982868 Msa0572930:CDS 45.0%
CTGTAAGGTACAGATGCCAA+AGG + chr4_1:75982998-75983017 None:intergenic 45.0%
AGGAACTGCACTCGTTCACA+GGG + chr4_1:75979590-75979609 None:intergenic 50.0%
TTGGGGGTTGAGATGAAGGA+AGG + chr4_1:75979712-75979731 None:intergenic 50.0%
ATCGTTGGGGGTTGAGATGA+AGG + chr4_1:75979716-75979735 None:intergenic 50.0%
AAGGTGAAAGGGAGACGAGT+TGG + chr4_1:75979748-75979767 None:intergenic 50.0%
CGGAAGTGAGTGAAGGTGAA+AGG + chr4_1:75979760-75979779 None:intergenic 50.0%
AGAAACCGCGAATCGGGTTT+GGG + chr4_1:75979788-75979807 None:intergenic 50.0%
AAGAAACCGCGAATCGGGTT+TGG + chr4_1:75979789-75979808 None:intergenic 50.0%
GGTTCAATCTCGCCGGAAAA+CGG - chr4_1:75979844-75979863 Msa0572930:three_prime_UTR 50.0%
!! ACCGGAAGTGTCACAAACAC+CGG + chr4_1:75979931-75979950 None:intergenic 50.0%
!! TGCTGGTGTAGAAGGTGTTG+TGG - chr4_1:75980023-75980042 Msa0572930:three_prime_UTR 50.0%
!! TGGTGTAGAAGGTGTTGTGG+TGG - chr4_1:75980026-75980045 Msa0572930:three_prime_UTR 50.0%
! GTGTTGTGGTGGAGATTTGG+TGG - chr4_1:75980037-75980056 Msa0572930:three_prime_UTR 50.0%
!! GTTGTGGTGGAGATTTGGTG+GGG - chr4_1:75980039-75980058 Msa0572930:three_prime_UTR 50.0%
CCTCGCCAATCATAAACCCT+AGG + chr4_1:75980084-75980103 None:intergenic 50.0%
CCTAGGGTTTATGATTGGCG+AGG - chr4_1:75980081-75980100 Msa0572930:CDS 50.0%
CAACCTATGCTGTGGCTTGA+AGG - chr4_1:75980532-75980551 Msa0572930:CDS 50.0%
!! GGACAACCTTCTAGAGTCTG+AGG + chr4_1:75981166-75981185 None:intergenic 50.0%
GTAGGATACCGCTTCCTCTA+TGG - chr4_1:75981194-75981213 Msa0572930:intron 50.0%
TCAAGCACCCATAGAGGAAG+CGG + chr4_1:75981205-75981224 None:intergenic 50.0%
CAGGAAGAATATCACACCCG+AGG + chr4_1:75981297-75981316 None:intergenic 50.0%
GATATTCTTCCTGTGCTGCG+TGG - chr4_1:75981304-75981323 Msa0572930:CDS 50.0%
ATGGCTTCGTCTCGTGAACT+TGG - chr4_1:75981593-75981612 Msa0572930:intron 50.0%
! GGAAAGCGTGAATGGGGAAA+TGG - chr4_1:75981804-75981823 Msa0572930:intron 50.0%
AAGCGTGAATGGGGAAATGG+CGG - chr4_1:75981807-75981826 Msa0572930:intron 50.0%
TTAGAAACGAGGGTGGCTCT+TGG - chr4_1:75981880-75981899 Msa0572930:intron 50.0%
GGCTCTTGGAACATGCCATA+TGG - chr4_1:75981894-75981913 Msa0572930:intron 50.0%
CGGCTGTTAACTCTGATGGA+TGG + chr4_1:75982064-75982083 None:intergenic 50.0%
TAGCCGGCTGTTAACTCTGA+TGG + chr4_1:75982068-75982087 None:intergenic 50.0%
AACCCAGATTGTAGCCCTGA+AGG - chr4_1:75982203-75982222 Msa0572930:intron 50.0%
!! GACAACTTTTGCTGGCTGCT+AGG - chr4_1:75982234-75982253 Msa0572930:intron 50.0%
GTAAACCGGTCCCAATTTCG+TGG + chr4_1:75982416-75982435 None:intergenic 50.0%
GAGGAACTGCACTCGTTCAC+AGG + chr4_1:75979591-75979610 None:intergenic 55.0%
ACGGGAAGAAACCGCGAATC+GGG + chr4_1:75979794-75979813 None:intergenic 55.0%
GACGGGAAGAAACCGCGAAT+CGG + chr4_1:75979795-75979814 None:intergenic 55.0%
TCTAAATCCTCCGATGCCGG+CGG - chr4_1:75979823-75979842 Msa0572930:three_prime_UTR 55.0%
TCAATCTCGCCGGAAAACGG+CGG - chr4_1:75979847-75979866 Msa0572930:three_prime_UTR 55.0%
!! GGAACTTCTCCGCCGTTTTC+CGG + chr4_1:75979859-75979878 None:intergenic 55.0%
ACGATCTTTCTCCGCAGCGT+CGG - chr4_1:75979893-75979912 Msa0572930:three_prime_UTR 55.0%
GCCGGTGTTTGTGACACTTC+CGG - chr4_1:75979927-75979946 Msa0572930:three_prime_UTR 55.0%
!! TTGAAAGCGCTTGCTGCTGC+TGG - chr4_1:75980006-75980025 Msa0572930:three_prime_UTR 55.0%
CTTGCTGCTGCTGGTGTAGA+AGG - chr4_1:75980015-75980034 Msa0572930:three_prime_UTR 55.0%
! CAGGGAGTGCAGATTGGCAT+GGG - chr4_1:75981521-75981540 Msa0572930:intron 55.0%
TGGGGAAATGGCGGTCCATT+TGG - chr4_1:75981816-75981835 Msa0572930:intron 55.0%
AATGGCGGTCCATTTGGCAC+TGG - chr4_1:75981822-75981841 Msa0572930:intron 55.0%
AACTACGGTGGCTGCAGAAG+TGG - chr4_1:75982511-75982530 Msa0572930:CDS 55.0%
ACTACGGTGGCTGCAGAAGT+GGG - chr4_1:75982512-75982531 Msa0572930:CDS 55.0%
CTGCACTCGTTCACAGGGTG+TGG + chr4_1:75979585-75979604 None:intergenic 60.0%
CGAGATTGAACCGCCGGCAT+CGG + chr4_1:75979836-75979855 None:intergenic 60.0%
TTCCGGCGAGATTGAACCGC+CGG + chr4_1:75979842-75979861 None:intergenic 60.0%
GACGCTGCGGAGAAAGATCG+TGG + chr4_1:75979894-75979913 None:intergenic 60.0%
! GCAGGGAGTGCAGATTGGCA+TGG - chr4_1:75981520-75981539 Msa0572930:intron 60.0%
GTGCAGATTGGCATGGGTCC+CGG - chr4_1:75981527-75981546 Msa0572930:intron 60.0%
! GATTGAACCGCCGGCATCGG+AGG + chr4_1:75979833-75979852 None:intergenic 65.0%
TGCCGGCGGTTCAATCTCGC+CGG - chr4_1:75979837-75979856 Msa0572930:three_prime_UTR 65.0%
GATCCACGTCTCCGACGCTG+CGG + chr4_1:75979907-75979926 None:intergenic 65.0%
GGAGAACGTCCACGCAGCAC+AGG + chr4_1:75981316-75981335 None:intergenic 65.0%
CAGATTGGCATGGGTCCCGG+TGG - chr4_1:75981530-75981549 Msa0572930:intron 65.0%
! TCTCCGCAGCGTCGGAGACG+TGG - chr4_1:75979901-75979920 Msa0572930:three_prime_UTR 70.0%
GCGTCGGAGACGTGGATCGC+CGG - chr4_1:75979909-75979928 Msa0572930:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 75979560 75983069 75979560 ID=Msa0572930;Name=Msa0572930
chr4_1 mRNA 75979560 75983069 75979560 ID=Msa0572930-mRNA-1;Parent=Msa0572930;Name=Msa0572930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=122|1|1|1|1|1|4|504|548
chr4_1 exon 75979560 75980864 75979560 ID=Msa0572930-mRNA-1:exon:26373;Parent=Msa0572930-mRNA-1
chr4_1 exon 75980992 75981105 75980992 ID=Msa0572930-mRNA-1:exon:26372;Parent=Msa0572930-mRNA-1
chr4_1 exon 75981221 75981431 75981221 ID=Msa0572930-mRNA-1:exon:26371;Parent=Msa0572930-mRNA-1
chr4_1 exon 75982427 75983069 75982427 ID=Msa0572930-mRNA-1:exon:26370;Parent=Msa0572930-mRNA-1
chr4_1 five_prime_UTR 75982948 75983069 75982948 ID=Msa0572930-mRNA-1:five_prime_utr;Parent=Msa0572930-mRNA-1
chr4_1 CDS 75982427 75982947 75982427 ID=Msa0572930-mRNA-1:cds;Parent=Msa0572930-mRNA-1
chr4_1 CDS 75981221 75981431 75981221 ID=Msa0572930-mRNA-1:cds;Parent=Msa0572930-mRNA-1
chr4_1 CDS 75980992 75981105 75980992 ID=Msa0572930-mRNA-1:cds;Parent=Msa0572930-mRNA-1
chr4_1 CDS 75980064 75980864 75980064 ID=Msa0572930-mRNA-1:cds;Parent=Msa0572930-mRNA-1
chr4_1 three_prime_UTR 75979560 75980063 75979560 ID=Msa0572930-mRNA-1:three_prime_utr;Parent=Msa0572930-mRNA-1
Gene Sequence

>Msa0572930

ATGGCGATCTCATCACAATCCTTCTCACCTTCCTTCATCTCAACCCCCAACGATTTAACTCGTCCAACTCGTCTCCCTTTCACCTTCACTCACTTCCGAAAAACCCAAACCCGATTCGCGGTTTCTTCCCGTCTCAACTCTTCTAAATCCTCCGATGCCGGCGGTTCAATCTCGCCGGAAAACGGCGGAGAAGTTCCCTATGAGATTCACCACGATCTTTCTCCGCAGCGTCGGAGACGTGGATCGCCGGTGTTTGTGACACTTCCGGTGAAATCTGTTGGTTTAGAGGGGAAGATTTGGAGGCCGAAAGCGATGATGTTGTCGTTGAAAGCGCTTGCTGCTGCTGGTGTAGAAGGTGTTGTGGTGGAGATTTGGTGGGGTGTTGTTGAAAGGAATCAGCCTAGGGTTTATGATTGGCGAGGGTATCGTGAACTTGTTATGATGGCTTGCATGTGTGGACTTAAAGTTCGTGCTGTTCTTGCATTTCATCAACATGGCACTCATGGTGATGATCCTAATGGGATACCGCTTCCTCTATGGGTGCTTGATGAGATACAGAAAGATCCGGATTTAGCATTTTCTGACAGGTTTGGAAGAAGAAATATTGAATACATTTCCCTCGGGTGTGATATTCTTCCTGTGCTGCGTGGACGTTCTCCCATTCAAGCATATGCGGATTTTATGAGGGATTTTAGGGACACTTTTAGGCCATACCTTGGCTTTATCATTACAGGAGTGCAGATTGGCATGGGTCCCGGTGGTGAACTAAGATATCCTTCATTGTCTTCCCAAAAGCTAAATATGGCTTCGTCTCGTGAACTTGGAGAGTTTCAGTGCTATGATAAGTATATGCTTGCTTCTCTAAACGCCTCTGCAAGAAATATGGGAAAGCGTGAATGGGGAAATGGCGGTCCATTTGGCACTGGAAGTTTGACGAAAAATCCTGAGCGTTCTGAATTCTTTAGAAACGAGGGTGGCTCTTGGAACATGCCATATGGTAAATTTTTCCTTGAATGGTACTCAGATATGCTGCTACTGCATGGAGAGAGAATTTGTAGAGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCACATATCAGCAAAATTGGCTGCCATTCACTGGCACTATGTCACACAATCCCATCCATCAGAGTTAACAGCCGGCTATTATAATACTTTTAACAGGGATGGATACTTACCAATTCTACGCATCTTTAGTAAATACGGATTCTCGATGTGCTGCTCTTGTTTTGAAATGCAAGATGTAGTTATGAATAAGATCAACCCAGATTGTAGCCCTGAAGGTTTTCTTAGACAACTTTTGCTGGCTGCTAGGCTCTGTGACATATCACTTGAAGGTCAAAATTTTTCAACTGATTTGGATGATGATGGATTCACTCAGGTGCTGAAGATGTCAAAATTTTACTCAGATGGGATTGAGAGACGCCCATTCTCATTCAACTTCGTAAGAATGGACAAAAACATGTTTGAACCACGAAATTGGGACCGGTTTACCCGATTTGTGAGACGAATGTCTGCTGGAAACATGTTTCGAGCCAGATTAAATTCTGTAGGAAACCTACAATTGAAAACTACGGTGGCTGCAGAAGTGGGATTGTTATACCAGCTATACCAGTACTCTTGA
Protein sequence

>Msa0572930

MAISSQSFSPSFISTPNDLTRPTRLPFTFTHFRKTQTRFAVSSRLNSSKSSDAGGSISPENGGEVPYEIHHDLSPQRRRRGSPVFVTLPVKSVGLEGKIWRPKAMMLSLKALAAAGVEGVVVEIWWGVVERNQPRVYDWRGYRELVMMACMCGLKVRAVLAFHQHGTHGDDPNGIPLPLWVLDEIQKDPDLAFSDRFGRRNIEYISLGCDILPVLRGRSPIQAYADFMRDFRDTFRPYLGFIITGVQIGMGPGGELRYPSLSSQKLNMASSRELGEFQCYDKYMLASLNASARNMGKREWGNGGPFGTGSLTKNPERSEFFRNEGGSWNMPYGKFFLEWYSDMLLLHGERICREAETIFRGTEVHISAKLAAIHWHYVTQSHPSELTAGYYNTFNRDGYLPILRIFSKYGFSMCCSCFEMQDVVMNKINPDCSPEGFLRQLLLAARLCDISLEGQNFSTDLDDDGFTQVLKMSKFYSDGIERRPFSFNFVRMDKNMFEPRNWDRFTRFVRRMSAGNMFRARLNSVGNLQLKTTVAAEVGLLYQLYQYS*