AlfalfaGEDB | Msa0793530

M. sativa cultivar zhongmu-4 / Msa0793530

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793530	XP_003610715.1	91.506	259	13	4	1	258	1	251	6.92e-164	469

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793530	G7K2D9	91.506	259	13	4	1	258	1	251	3.31e-164	469

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0793530	0.839329	1.691549e-57	-8.615850e-47
Msa0000800	Msa0793530	-0.830483	2.862546e-55	-8.615850e-47
Msa0001420	Msa0793530	0.808969	2.385244e-50	-8.615850e-47
Msa0001510	Msa0793530	0.889096	3.287343e-73	-8.615850e-47
Msa0001540	Msa0793530	0.825471	4.602732e-54	-8.615850e-47
Msa0001550	Msa0793530	0.840360	9.115704e-58	-8.615850e-47
Msa0002110	Msa0793530	0.890832	6.892574e-74	-8.615850e-47
Msa0002690	Msa0793530	0.916010	2.977412e-85	-8.615850e-47
Msa0002700	Msa0793530	0.908465	1.660029e-81	-8.615850e-47
Msa0003340	Msa0793530	0.879209	1.502027e-69	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793530	MtrunA17_Chr5g0394411	91.506	259	13	4	1	258	26	276	1.60e-167	469

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793530	AT5G16810.2	63.793	232	72	4	37	258	52	281	1.60e-99	296
Msa0793530	AT5G16810.1	63.793	232	72	4	37	258	52	281	2.06e-99	296

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Find 63 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAAGATGTTCAAGA+AGG	0.570944	5_3:+5498463	Msa0793530:CDS
AAACTCGGATTGGTTCCAAG+TGG	0.701486	5_3:+5498360	Msa0793530:CDS
AAATTTGAGAGTGGATTTAG+TGG	0.435915	5_3:-5498287	None:intergenic
AACCCCACCAGCTCGTGTTC+CGG	0.404587	5_3:-5499596	None:intergenic
AACTCGGATTGGTTCCAAGT+GGG	0.614601	5_3:+5498361	Msa0793530:CDS
AAGAAGGCAGCGTTAAGATC+AGG	0.525969	5_3:+5498479	Msa0793530:CDS
AAGATGAAAGCAGGAAGAAG+AGG	0.526166	5_3:-5498259	None:intergenic
AAGGCCAAGTCCCTAAGTCT+TGG	0.505677	5_3:-5500279	None:intergenic
AATTATAATGATAATAGTAA+TGG	0.560663	5_3:+5498322	Msa0793530:CDS
ACCCCACCAGCTCGTGTTCC+GGG	0.371480	5_3:-5499595	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCAACTTTATCACAAACT+CGG	+	chr5_3:5498345-5498364	Msa0793530:CDS	30.0%
AAAACTCAAGATGTTCAAGA+AGG	+	chr5_3:5498463-5498482	Msa0793530:CDS	30.0%
TATGAGAATGGTTAAAGTAG+AGG	-	chr5_3:5498515-5498534	None:intergenic	30.0%
AAGCAGTACCTTAAAAAGAA+CGG	-	chr5_3:5498619-5498638	None:intergenic	30.0%
GAACTTATGACAAGTTTGTA+AGG	+	chr5_3:5498781-5498800	Msa0793530:intron	30.0%
TAAGTGCTTATATGTTCGTA+AGG	+	chr5_3:5498812-5498831	Msa0793530:intron	30.0%
TAGTAATACATCTGGATCAA+GGG	-	chr5_3:5498991-5499010	None:intergenic	30.0%
ATAGTAATACATCTGGATCA+AGG	-	chr5_3:5498992-5499011	None:intergenic	30.0%
GGGAAAGGCTTATATATAAT+AGG	-	chr5_3:5499358-5499377	None:intergenic	30.0%
ATTATATATAAGCCTTTCCC+TGG	+	chr5_3:5499358-5499377	Msa0793530:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	5498164	5500320	5498164	ID=Msa0793530;Name=Msa0793530
chr5_3	mRNA	5498164	5500320	5498164	ID=Msa0793530-mRNA-1;Parent=Msa0793530;Name=Msa0793530-mRNA-1;_AED=0.14;_eAED=0.14;_QI=77\|1\|0.83\|1\|1\|1\|6\|0\|258
chr5_3	exon	5498164	5498500	5498164	ID=Msa0793530-mRNA-1:exon:2147;Parent=Msa0793530-mRNA-1
chr5_3	exon	5498572	5498629	5498572	ID=Msa0793530-mRNA-1:exon:2148;Parent=Msa0793530-mRNA-1
chr5_3	exon	5499589	5499669	5499589	ID=Msa0793530-mRNA-1:exon:2149;Parent=Msa0793530-mRNA-1
chr5_3	exon	5499742	5499813	5499742	ID=Msa0793530-mRNA-1:exon:2150;Parent=Msa0793530-mRNA-1
chr5_3	exon	5499913	5500142	5499913	ID=Msa0793530-mRNA-1:exon:2151;Parent=Msa0793530-mRNA-1
chr5_3	exon	5500245	5500320	5500245	ID=Msa0793530-mRNA-1:exon:2152;Parent=Msa0793530-mRNA-1
chr5_3	five_prime_UTR	5498164	5498240	5498164	ID=Msa0793530-mRNA-1:five_prime_utr;Parent=Msa0793530-mRNA-1
chr5_3	CDS	5498241	5498500	5498241	ID=Msa0793530-mRNA-1:cds;Parent=Msa0793530-mRNA-1
chr5_3	CDS	5498572	5498629	5498572	ID=Msa0793530-mRNA-1:cds;Parent=Msa0793530-mRNA-1
chr5_3	CDS	5499589	5499669	5499589	ID=Msa0793530-mRNA-1:cds;Parent=Msa0793530-mRNA-1
chr5_3	CDS	5499742	5499813	5499742	ID=Msa0793530-mRNA-1:cds;Parent=Msa0793530-mRNA-1
chr5_3	CDS	5499913	5500142	5499913	ID=Msa0793530-mRNA-1:cds;Parent=Msa0793530-mRNA-1
chr5_3	CDS	5500245	5500320	5500245	ID=Msa0793530-mRNA-1:cds;Parent=Msa0793530-mRNA-1

Gene Sequence

>Msa0793530

ATGGGCGTTGCTGCTTTTCCTCTTCTTCCTGCTTTCATCTTAACCTCCACTAAATCCACTCTCAAATTTCAAGTAAAAGCTAATTATAATGATAATAGTAATGGCTTCAACTTTATCACAAACTCGGATTGGTTCCAAGTGGGTCGAGCCATTGGCAACTATGGTTTCATGAACGTTACTACTACTTCTAGTACTGATCAATATTCACTTGGTGGTGGATTGAAAACTCAAGATGTTCAAGAAGGCAGCGTTAAGATCAGGCTTTATGAAGGCAGAGTTTCCCAGGGTCCACTTAGACAAACTCCCGTTCTTTTTAAGGTTTATCCCGGAACACGAGCTGGTGGGGTTGTAGCAGATATGATGGCTGCAAACGAGTTGAATTCCCACATGTTCCTTCAAAGCAGTTCTAAAGGTATTAGTCAGCATCTTATGTTACTTTTAGGTGGGTTTGAAACAACTACTGGAGAGCAGTGGCTTGCTTTTCGTGATTACGGGAAATCTACCGCAGCAGACTATGCAAAAGTTGCGAGTGAGAAGGTATCAAAACTGTCTTCATGGAATAGCTTTGAACGAGGCCAGTCAATGAAAAGAAGACGGTGTTTCATTATAAAGCTTCTTCAGGGTGCTTTGAGAGGTTTGGCTTACATGCACGATCATGATAGATTACACCAGAGTCTTGGACCATTTTCTGTATCTCTCAACACAATATCTGAAAGTGAAGCTCCTTATTTGATTCCAAGACTTAGGGACTTGGCCTTTTCTGTTAGTGTCAGGTAA

Protein sequence

>Msa0793530

MGVAAFPLLPAFILTSTKSTLKFQVKANYNDNSNGFNFITNSDWFQVGRAIGNYGFMNVTTTSSTDQYSLGGGLKTQDVQEGSVKIRLYEGRVSQGPLRQTPVLFKVYPGTRAGGVVADMMAANELNSHMFLQSSSKGISQHLMLLLGGFETTTGEQWLAFRDYGKSTAADYAKVASEKVSKLSSWNSFERGQSMKRRRCFIIKLLQGALRGLAYMHDHDRLHQSLGPFSVSLNTISESEAPYLIPRLRDLAFSVSVR*