AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0793530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793530 MtrunA17_Chr5g0394411 91.506 259 13 4 1 258 26 276 1.60e-167 469
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793530 AT5G16810.2 63.793 232 72 4 37 258 52 281 1.60e-99 296
Msa0793530 AT5G16810.1 63.793 232 72 4 37 258 52 281 2.06e-99 296

Find 63 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATTATAAAGCTTCTTC+AGG 0.278296 5_3:+5500041 Msa0793530:CDS
TCAGGGTGCTTTGAGAGGTT+TGG 0.329693 5_3:+5500059 Msa0793530:CDS
CTAAGTCTTGGAATCAAATA+AGG 0.340376 5_3:-5500267 None:intergenic
ATCCCGTGCATTGTGGATAA+TGG 0.347183 5_3:+5498191 Msa0793530:five_prime_UTR
GGTCGAGCCATTGGCAACTA+TGG 0.348534 5_3:+5498382 Msa0793530:CDS
ACCCCACCAGCTCGTGTTCC+GGG 0.371480 5_3:-5499595 None:intergenic
CTTATTTGATTCCAAGACTT+AGG 0.379698 5_3:+5500268 Msa0793530:CDS
AACCCCACCAGCTCGTGTTC+CGG 0.404587 5_3:-5499596 None:intergenic
AGGTATCAAAACTGTCTTCA+TGG 0.420473 5_3:+5499977 Msa0793530:CDS
GTGGAGGTTAAGATGAAAGC+AGG 0.431813 5_3:-5498268 None:intergenic
AAATTTGAGAGTGGATTTAG+TGG 0.435915 5_3:-5498287 None:intergenic
TTATTTGATTCCAAGACTTA+GGG 0.437676 5_3:+5500269 Msa0793530:CDS
TACTTGAGAGATACAGAAAA+TGG 0.439660 5_3:-5500123 None:intergenic
CAGAAAATGGTCCAAGACTC+TGG 0.456172 5_3:-5500110 None:intergenic
TTATGAAGGCAGAGTTTCCC+AGG 0.466570 5_3:+5498575 Msa0793530:CDS
TTCATTATAAAGCTTCTTCA+GGG 0.469217 5_3:+5500042 Msa0793530:CDS
GGTGGGTTTGAAACAACTAC+TGG 0.470427 5_3:+5499784 Msa0793530:CDS
GCAACGCCCATGCTTGTAAA+CGG 0.479093 5_3:-5498229 None:intergenic
TTCCAAGTGGGTCGAGCCAT+TGG 0.488851 5_3:+5498373 Msa0793530:CDS
ACTTTATCACAAACTCGGAT+TGG 0.497439 5_3:+5498350 Msa0793530:CDS
TGATTATCCGTTTACAAGCA+TGG 0.497476 5_3:+5498222 Msa0793530:exon
CTTCTTCAGGGTGCTTTGAG+AGG 0.501298 5_3:+5500054 Msa0793530:CDS
AAGGCCAAGTCCCTAAGTCT+TGG 0.505677 5_3:-5500279 None:intergenic
TACTTCCAGAGCAGTTCTAA+AGG 0.508594 5_3:+5499733 Msa0793530:intron
TCCCGGAACACGAGCTGGTG+GGG 0.514552 5_3:+5499594 Msa0793530:CDS
GATTCCAAGACTTAGGGACT+TGG 0.521047 5_3:+5500275 Msa0793530:CDS
TGCCAATGGCTCGACCCACT+TGG 0.523390 5_3:-5498375 None:intergenic
GATAGATTACACCAGAGTCT+TGG 0.524389 5_3:+5500099 Msa0793530:CDS
TTACCTGACACTAACAGAAA+AGG 0.524628 5_3:-5500298 None:intergenic
AAGAAGGCAGCGTTAAGATC+AGG 0.525969 5_3:+5498479 Msa0793530:CDS
AAGATGAAAGCAGGAAGAAG+AGG 0.526166 5_3:-5498259 None:intergenic
CTTCAACTTTATCACAAACT+CGG 0.529481 5_3:+5498345 Msa0793530:CDS
GATCAATATTCACTTGGTGG+TGG 0.529898 5_3:+5498436 Msa0793530:CDS
ATCTCACTTGAAGGAACATG+TGG 0.539130 5_3:-5499654 None:intergenic
TTGCAGTGCAGGCTTTATGA+AGG 0.544158 5_3:+5498561 Msa0793530:intron
ACTGATCAATATTCACTTGG+TGG 0.549006 5_3:+5498433 Msa0793530:CDS
GATTATCCGTTTACAAGCAT+GGG 0.554666 5_3:+5498223 Msa0793530:exon
AATTATAATGATAATAGTAA+TGG 0.560663 5_3:+5498322 Msa0793530:CDS
AGAACGGGAGTTTGTCTAAG+TGG 0.560791 5_3:-5498600 None:intergenic
TTAACAATGAAGGTTTATCC+CGG 0.561065 5_3:+5499577 Msa0793530:intron
GTTTATCCCGGAACACGAGC+TGG 0.561221 5_3:+5499589 Msa0793530:CDS
ATCCCGGAACACGAGCTGGT+GGG 0.565244 5_3:+5499593 Msa0793530:CDS
TATCCCGGAACACGAGCTGG+TGG 0.567710 5_3:+5499592 Msa0793530:CDS
TGAAACAACTACTGGAGAGC+AGG 0.568229 5_3:+5499792 Msa0793530:CDS
AAAACTCAAGATGTTCAAGA+AGG 0.570944 5_3:+5498463 Msa0793530:CDS
CTCCATTATCCACAATGCAC+GGG 0.578695 5_3:-5498193 None:intergenic
GAGTTTGTCTAAGTGGACCC+TGG 0.579200 5_3:-5498593 None:intergenic
AGTTTGTCTAAGTGGACCCT+GGG 0.579559 5_3:-5498592 None:intergenic
ACTCCATTATCCACAATGCA+CGG 0.590209 5_3:-5498194 None:intergenic
AGTACTGATCAATATTCACT+TGG 0.590757 5_3:+5498430 Msa0793530:CDS
TTTGAGAGTGGATTTAGTGG+AGG 0.594256 5_3:-5498284 None:intergenic
TGGGGTTGTAGCAGATATGA+TGG 0.598189 5_3:+5499612 Msa0793530:CDS
TAGTTATATCCCGTGCATTG+TGG 0.599008 5_3:+5498184 Msa0793530:five_prime_UTR
CATGAAACCATAGTTGCCAA+TGG 0.612922 5_3:-5498389 None:intergenic
AACTCGGATTGGTTCCAAGT+GGG 0.614601 5_3:+5498361 Msa0793530:CDS
GCCAGTCAATGAAAAGAAGA+CGG 0.620118 5_3:+5500016 Msa0793530:CDS
TGCAAAAGTTGCGAGTGAGA+AGG 0.637981 5_3:+5499957 Msa0793530:CDS
CATTGTGGATAATGGAGTGT+GGG 0.638172 5_3:+5498199 Msa0793530:five_prime_UTR
GCATTGTGGATAATGGAGTG+TGG 0.639182 5_3:+5498198 Msa0793530:five_prime_UTR
TATGAAGGCAGAGTTTCCCA+GGG 0.644272 5_3:+5498576 Msa0793530:CDS
AAACTCGGATTGGTTCCAAG+TGG 0.701486 5_3:+5498360 Msa0793530:CDS
TCTCACTTGAAGGAACATGT+GGG 0.704718 5_3:-5499653 None:intergenic
TCATGGAATAGCTTTGAACG+AGG 0.717104 5_3:+5499994 Msa0793530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAATGATAATAGTAA+TGG + chr5_3:5498322-5498341 Msa0793530:CDS 10.0%
!! AATTAAATGAATAATATCAT+GGG - chr5_3:5499026-5499045 None:intergenic 10.0%
!! AAATTAAATGAATAATATCA+TGG - chr5_3:5499027-5499046 None:intergenic 10.0%
!! AATTATAATGATAATAGTAA+TGG + chr5_3:5498322-5498341 Msa0793530:CDS 10.0%
!! AATTAAATGAATAATATCAT+GGG - chr5_3:5499026-5499045 None:intergenic 10.0%
!! AAATTAAATGAATAATATCA+TGG - chr5_3:5499027-5499046 None:intergenic 10.0%
!! TGAATTAGAATTACATTATT+TGG + chr5_3:5498756-5498775 Msa0793530:intron 15.0%
!!! TAAACATTTTGTAATTTGTT+TGG - chr5_3:5498958-5498977 None:intergenic 15.0%
!!! ATTATTTCTTTTAACAATGA+AGG + chr5_3:5499567-5499586 Msa0793530:intron 15.0%
!! TGAATTAGAATTACATTATT+TGG + chr5_3:5498756-5498775 Msa0793530:intron 15.0%
!!! TAAACATTTTGTAATTTGTT+TGG - chr5_3:5498958-5498977 None:intergenic 15.0%
!!! ATTATTTCTTTTAACAATGA+AGG + chr5_3:5499567-5499586 Msa0793530:intron 15.0%
!!! CTTATTTTGCAGTTTATTTA+TGG - chr5_3:5498924-5498943 None:intergenic 20.0%
!!! TTTGATAATAGTAATACATC+TGG - chr5_3:5498999-5499018 None:intergenic 20.0%
!! GATGTATTACTATTATCAAA+TGG + chr5_3:5498999-5499018 Msa0793530:intron 20.0%
!!! ATTTTGGAATATTAACATTG+AGG + chr5_3:5499123-5499142 Msa0793530:intron 20.0%
!! ACTTGTTTAAATGCATAATT+TGG - chr5_3:5499175-5499194 None:intergenic 20.0%
!! ATTCTTAATGAAATGTCTTA+AGG - chr5_3:5499200-5499219 None:intergenic 20.0%
!! AATAAAAGAAAAGTTTGTCT+TGG - chr5_3:5499290-5499309 None:intergenic 20.0%
!!! CTTATTTTGCAGTTTATTTA+TGG - chr5_3:5498924-5498943 None:intergenic 20.0%
!!! TTTGATAATAGTAATACATC+TGG - chr5_3:5498999-5499018 None:intergenic 20.0%
!! GATGTATTACTATTATCAAA+TGG + chr5_3:5498999-5499018 Msa0793530:intron 20.0%
!!! ATTTTGGAATATTAACATTG+AGG + chr5_3:5499123-5499142 Msa0793530:intron 20.0%
!! ACTTGTTTAAATGCATAATT+TGG - chr5_3:5499175-5499194 None:intergenic 20.0%
!! ATTCTTAATGAAATGTCTTA+AGG - chr5_3:5499200-5499219 None:intergenic 20.0%
!! AATAAAAGAAAAGTTTGTCT+TGG - chr5_3:5499290-5499309 None:intergenic 20.0%
!! TTTTACTTGAAATTTGAGAG+TGG - chr5_3:5498299-5498318 None:intergenic 25.0%
! ATCATTAATCAGTATGAGAA+TGG - chr5_3:5498527-5498546 None:intergenic 25.0%
!! TGCAATTTCAACTATCATTT+TGG + chr5_3:5499107-5499126 Msa0793530:intron 25.0%
!!! ATTTGGTTTTTGAGATTGTA+CGG - chr5_3:5499158-5499177 None:intergenic 25.0%
! GGAAAGGCTTATATATAATA+GGG - chr5_3:5499357-5499376 None:intergenic 25.0%
! ATTAAAACTATCTCACTTGA+AGG - chr5_3:5499666-5499685 None:intergenic 25.0%
! AATAACACTATGAACTGATA+TGG - chr5_3:5499693-5499712 None:intergenic 25.0%
!!! ATCTTATGTTACTTTTAGGT+GGG + chr5_3:5499767-5499786 Msa0793530:CDS 25.0%
!! TTATTTTCAAATTGAGAGGA+CGG - chr5_3:5499819-5499838 None:intergenic 25.0%
!!! AAGCTTATTTTCAAATTGAG+AGG - chr5_3:5499823-5499842 None:intergenic 25.0%
! TTTCATTATAAAGCTTCTTC+AGG + chr5_3:5500041-5500060 Msa0793530:CDS 25.0%
! TTCATTATAAAGCTTCTTCA+GGG + chr5_3:5500042-5500061 Msa0793530:CDS 25.0%
! ATTACAAGTAAGCATGTTAA+TGG - chr5_3:5500215-5500234 None:intergenic 25.0%
! TTATTTGATTCCAAGACTTA+GGG + chr5_3:5500269-5500288 Msa0793530:CDS 25.0%
!! TTTTACTTGAAATTTGAGAG+TGG - chr5_3:5498299-5498318 None:intergenic 25.0%
! ATCATTAATCAGTATGAGAA+TGG - chr5_3:5498527-5498546 None:intergenic 25.0%
!! TGCAATTTCAACTATCATTT+TGG + chr5_3:5499107-5499126 Msa0793530:intron 25.0%
!!! ATTTGGTTTTTGAGATTGTA+CGG - chr5_3:5499158-5499177 None:intergenic 25.0%
! GGAAAGGCTTATATATAATA+GGG - chr5_3:5499357-5499376 None:intergenic 25.0%
! ATTAAAACTATCTCACTTGA+AGG - chr5_3:5499666-5499685 None:intergenic 25.0%
! AATAACACTATGAACTGATA+TGG - chr5_3:5499693-5499712 None:intergenic 25.0%
!!! ATCTTATGTTACTTTTAGGT+GGG + chr5_3:5499767-5499786 Msa0793530:CDS 25.0%
!! TTATTTTCAAATTGAGAGGA+CGG - chr5_3:5499819-5499838 None:intergenic 25.0%
!!! AAGCTTATTTTCAAATTGAG+AGG - chr5_3:5499823-5499842 None:intergenic 25.0%
! TTTCATTATAAAGCTTCTTC+AGG + chr5_3:5500041-5500060 Msa0793530:CDS 25.0%
! TTCATTATAAAGCTTCTTCA+GGG + chr5_3:5500042-5500061 Msa0793530:CDS 25.0%
! ATTACAAGTAAGCATGTTAA+TGG - chr5_3:5500215-5500234 None:intergenic 25.0%
! TTATTTGATTCCAAGACTTA+GGG + chr5_3:5500269-5500288 Msa0793530:CDS 25.0%
! AAATTTGAGAGTGGATTTAG+TGG - chr5_3:5498290-5498309 None:intergenic 30.0%
CTTCAACTTTATCACAAACT+CGG + chr5_3:5498345-5498364 Msa0793530:CDS 30.0%
!! AGTACTGATCAATATTCACT+TGG + chr5_3:5498430-5498449 Msa0793530:CDS 30.0%
AAAACTCAAGATGTTCAAGA+AGG + chr5_3:5498463-5498482 Msa0793530:CDS 30.0%
TATGAGAATGGTTAAAGTAG+AGG - chr5_3:5498515-5498534 None:intergenic 30.0%
AAGCAGTACCTTAAAAAGAA+CGG - chr5_3:5498619-5498638 None:intergenic 30.0%
! CTCAATTTAGTTCATGAACT+TGG + chr5_3:5498677-5498696 Msa0793530:intron 30.0%
GAACTTATGACAAGTTTGTA+AGG + chr5_3:5498781-5498800 Msa0793530:intron 30.0%
TAAGTGCTTATATGTTCGTA+AGG + chr5_3:5498812-5498831 Msa0793530:intron 30.0%
TAGTAATACATCTGGATCAA+GGG - chr5_3:5498991-5499010 None:intergenic 30.0%
ATAGTAATACATCTGGATCA+AGG - chr5_3:5498992-5499011 None:intergenic 30.0%
GGGAAAGGCTTATATATAAT+AGG - chr5_3:5499358-5499377 None:intergenic 30.0%
ATTATATATAAGCCTTTCCC+TGG + chr5_3:5499358-5499377 Msa0793530:intron 30.0%
AACAGTTGTAAAAGATGTAG+GGG - chr5_3:5499425-5499444 None:intergenic 30.0%
CAACAGTTGTAAAAGATGTA+GGG - chr5_3:5499426-5499445 None:intergenic 30.0%
ACAACAGTTGTAAAAGATGT+AGG - chr5_3:5499427-5499446 None:intergenic 30.0%
CAAAATGTTATGTTCCATTG+AGG + chr5_3:5499520-5499539 Msa0793530:intron 30.0%
ATTTCAATTTCAAGCCTCAA+TGG - chr5_3:5499537-5499556 None:intergenic 30.0%
TTAACAATGAAGGTTTATCC+CGG + chr5_3:5499577-5499596 Msa0793530:intron 30.0%
!!! CAGCATCTTATGTTACTTTT+AGG + chr5_3:5499763-5499782 Msa0793530:CDS 30.0%
!!! CATCTTATGTTACTTTTAGG+TGG + chr5_3:5499766-5499785 Msa0793530:CDS 30.0%
AACATAATTAACAGAGTTGG+AGG - chr5_3:5499872-5499891 None:intergenic 30.0%
TCCAACTCTGTTAATTATGT+TGG + chr5_3:5499871-5499890 Msa0793530:intron 30.0%
TCCAACATAATTAACAGAGT+TGG - chr5_3:5499875-5499894 None:intergenic 30.0%
GAGATATTTATTCGATTCAG+TGG + chr5_3:5499893-5499912 Msa0793530:intron 30.0%
TACTTGAGAGATACAGAAAA+TGG - chr5_3:5500126-5500145 None:intergenic 30.0%
! TCTAGAGCCAAATTAAATGT+CGG - chr5_3:5500158-5500177 None:intergenic 30.0%
!!! TTGGCTCTAGATTTTTCATT+TGG + chr5_3:5500167-5500186 Msa0793530:intron 30.0%
CATGCTTACTTGTAATATGA+TGG + chr5_3:5500219-5500238 Msa0793530:intron 30.0%
CTAAGTCTTGGAATCAAATA+AGG - chr5_3:5500270-5500289 None:intergenic 30.0%
CTTATTTGATTCCAAGACTT+AGG + chr5_3:5500268-5500287 Msa0793530:CDS 30.0%
! AAATTTGAGAGTGGATTTAG+TGG - chr5_3:5498290-5498309 None:intergenic 30.0%
CTTCAACTTTATCACAAACT+CGG + chr5_3:5498345-5498364 Msa0793530:CDS 30.0%
!! AGTACTGATCAATATTCACT+TGG + chr5_3:5498430-5498449 Msa0793530:CDS 30.0%
AAAACTCAAGATGTTCAAGA+AGG + chr5_3:5498463-5498482 Msa0793530:CDS 30.0%
TATGAGAATGGTTAAAGTAG+AGG - chr5_3:5498515-5498534 None:intergenic 30.0%
AAGCAGTACCTTAAAAAGAA+CGG - chr5_3:5498619-5498638 None:intergenic 30.0%
! CTCAATTTAGTTCATGAACT+TGG + chr5_3:5498677-5498696 Msa0793530:intron 30.0%
GAACTTATGACAAGTTTGTA+AGG + chr5_3:5498781-5498800 Msa0793530:intron 30.0%
TAAGTGCTTATATGTTCGTA+AGG + chr5_3:5498812-5498831 Msa0793530:intron 30.0%
TAGTAATACATCTGGATCAA+GGG - chr5_3:5498991-5499010 None:intergenic 30.0%
ATAGTAATACATCTGGATCA+AGG - chr5_3:5498992-5499011 None:intergenic 30.0%
GGGAAAGGCTTATATATAAT+AGG - chr5_3:5499358-5499377 None:intergenic 30.0%
ATTATATATAAGCCTTTCCC+TGG + chr5_3:5499358-5499377 Msa0793530:intron 30.0%
AACAGTTGTAAAAGATGTAG+GGG - chr5_3:5499425-5499444 None:intergenic 30.0%
CAACAGTTGTAAAAGATGTA+GGG - chr5_3:5499426-5499445 None:intergenic 30.0%
ACAACAGTTGTAAAAGATGT+AGG - chr5_3:5499427-5499446 None:intergenic 30.0%
CAAAATGTTATGTTCCATTG+AGG + chr5_3:5499520-5499539 Msa0793530:intron 30.0%
ATTTCAATTTCAAGCCTCAA+TGG - chr5_3:5499537-5499556 None:intergenic 30.0%
TTAACAATGAAGGTTTATCC+CGG + chr5_3:5499577-5499596 Msa0793530:intron 30.0%
!!! CAGCATCTTATGTTACTTTT+AGG + chr5_3:5499763-5499782 Msa0793530:CDS 30.0%
!!! CATCTTATGTTACTTTTAGG+TGG + chr5_3:5499766-5499785 Msa0793530:CDS 30.0%
AACATAATTAACAGAGTTGG+AGG - chr5_3:5499872-5499891 None:intergenic 30.0%
TCCAACTCTGTTAATTATGT+TGG + chr5_3:5499871-5499890 Msa0793530:intron 30.0%
TCCAACATAATTAACAGAGT+TGG - chr5_3:5499875-5499894 None:intergenic 30.0%
GAGATATTTATTCGATTCAG+TGG + chr5_3:5499893-5499912 Msa0793530:intron 30.0%
TACTTGAGAGATACAGAAAA+TGG - chr5_3:5500126-5500145 None:intergenic 30.0%
! TCTAGAGCCAAATTAAATGT+CGG - chr5_3:5500158-5500177 None:intergenic 30.0%
!!! TTGGCTCTAGATTTTTCATT+TGG + chr5_3:5500167-5500186 Msa0793530:intron 30.0%
CATGCTTACTTGTAATATGA+TGG + chr5_3:5500219-5500238 Msa0793530:intron 30.0%
CTAAGTCTTGGAATCAAATA+AGG - chr5_3:5500270-5500289 None:intergenic 30.0%
CTTATTTGATTCCAAGACTT+AGG + chr5_3:5500268-5500287 Msa0793530:CDS 30.0%
TGATTATCCGTTTACAAGCA+TGG + chr5_3:5498222-5498241 Msa0793530:exon 35.0%
GATTATCCGTTTACAAGCAT+GGG + chr5_3:5498223-5498242 Msa0793530:exon 35.0%
ACTTTATCACAAACTCGGAT+TGG + chr5_3:5498350-5498369 Msa0793530:CDS 35.0%
ACTGATCAATATTCACTTGG+TGG + chr5_3:5498433-5498452 Msa0793530:CDS 35.0%
! ACAAACTCCCGTTCTTTTTA+AGG + chr5_3:5498608-5498627 Msa0793530:CDS 35.0%
AGCAGTACCTTAAAAAGAAC+GGG - chr5_3:5498618-5498637 None:intergenic 35.0%
AGTGGATAAGGTCAAATAAG+TGG - chr5_3:5498716-5498735 None:intergenic 35.0%
ACTTATTTGACCTTATCCAC+TGG + chr5_3:5498715-5498734 Msa0793530:intron 35.0%
TTACAAGAAATACCCACAGA+CGG + chr5_3:5499065-5499084 Msa0793530:intron 35.0%
TGTCATAAGGCAATTGGTTA+AGG - chr5_3:5499317-5499336 None:intergenic 35.0%
AACAAGTGTCATAAGGCAAT+TGG - chr5_3:5499323-5499342 None:intergenic 35.0%
CATTATATGCTATGTGTCCA+GGG - chr5_3:5499378-5499397 None:intergenic 35.0%
ACATTATATGCTATGTGTCC+AGG - chr5_3:5499379-5499398 None:intergenic 35.0%
ACAGTTGTAAAAGATGTAGG+GGG - chr5_3:5499424-5499443 None:intergenic 35.0%
!! TAATACCTTTAGAACTGCTC+TGG - chr5_3:5499741-5499760 None:intergenic 35.0%
AGGTATCAAAACTGTCTTCA+TGG + chr5_3:5499977-5499996 Msa0793530:CDS 35.0%
! TGACTAGCCGACATTTAATT+TGG + chr5_3:5500148-5500167 Msa0793530:intron 35.0%
AAGCATGTTAATGGTTGAGT+GGG - chr5_3:5500206-5500225 None:intergenic 35.0%
TAAGCATGTTAATGGTTGAG+TGG - chr5_3:5500207-5500226 None:intergenic 35.0%
TTACCTGACACTAACAGAAA+AGG - chr5_3:5500301-5500320 None:intergenic 35.0%
! TTTTCTGTTAGTGTCAGGTA+AGG + chr5_3:5500300-5500319 Msa0793530:CDS 35.0%
TTTCTGTTAGTGTCAGGTAA+GGG + chr5_3:5500301-5500320 Msa0793530:CDS 35.0%
TGATTATCCGTTTACAAGCA+TGG + chr5_3:5498222-5498241 Msa0793530:exon 35.0%
GATTATCCGTTTACAAGCAT+GGG + chr5_3:5498223-5498242 Msa0793530:exon 35.0%
ACTTTATCACAAACTCGGAT+TGG + chr5_3:5498350-5498369 Msa0793530:CDS 35.0%
ACTGATCAATATTCACTTGG+TGG + chr5_3:5498433-5498452 Msa0793530:CDS 35.0%
! ACAAACTCCCGTTCTTTTTA+AGG + chr5_3:5498608-5498627 Msa0793530:CDS 35.0%
AGCAGTACCTTAAAAAGAAC+GGG - chr5_3:5498618-5498637 None:intergenic 35.0%
AGTGGATAAGGTCAAATAAG+TGG - chr5_3:5498716-5498735 None:intergenic 35.0%
ACTTATTTGACCTTATCCAC+TGG + chr5_3:5498715-5498734 Msa0793530:intron 35.0%
TTACAAGAAATACCCACAGA+CGG + chr5_3:5499065-5499084 Msa0793530:intron 35.0%
TGTCATAAGGCAATTGGTTA+AGG - chr5_3:5499317-5499336 None:intergenic 35.0%
AACAAGTGTCATAAGGCAAT+TGG - chr5_3:5499323-5499342 None:intergenic 35.0%
CATTATATGCTATGTGTCCA+GGG - chr5_3:5499378-5499397 None:intergenic 35.0%
ACATTATATGCTATGTGTCC+AGG - chr5_3:5499379-5499398 None:intergenic 35.0%
ACAGTTGTAAAAGATGTAGG+GGG - chr5_3:5499424-5499443 None:intergenic 35.0%
!! TAATACCTTTAGAACTGCTC+TGG - chr5_3:5499741-5499760 None:intergenic 35.0%
AGGTATCAAAACTGTCTTCA+TGG + chr5_3:5499977-5499996 Msa0793530:CDS 35.0%
! TGACTAGCCGACATTTAATT+TGG + chr5_3:5500148-5500167 Msa0793530:intron 35.0%
AAGCATGTTAATGGTTGAGT+GGG - chr5_3:5500206-5500225 None:intergenic 35.0%
TAAGCATGTTAATGGTTGAG+TGG - chr5_3:5500207-5500226 None:intergenic 35.0%
TTACCTGACACTAACAGAAA+AGG - chr5_3:5500301-5500320 None:intergenic 35.0%
TAGTTATATCCCGTGCATTG+TGG + chr5_3:5498184-5498203 Msa0793530:five_prime_UTR 40.0%
ACTCCATTATCCACAATGCA+CGG - chr5_3:5498197-5498216 None:intergenic 40.0%
!! CATTGTGGATAATGGAGTGT+GGG + chr5_3:5498199-5498218 Msa0793530:five_prime_UTR 40.0%
AAGATGAAAGCAGGAAGAAG+AGG - chr5_3:5498262-5498281 None:intergenic 40.0%
! TTTGAGAGTGGATTTAGTGG+AGG - chr5_3:5498287-5498306 None:intergenic 40.0%
CATGAAACCATAGTTGCCAA+TGG - chr5_3:5498392-5498411 None:intergenic 40.0%
! GATCAATATTCACTTGGTGG+TGG + chr5_3:5498436-5498455 Msa0793530:CDS 40.0%
GATGCTTATACCAGTGGATA+AGG - chr5_3:5498728-5498747 None:intergenic 40.0%
AATGCAGATGCTTATACCAG+TGG - chr5_3:5498734-5498753 None:intergenic 40.0%
GTCTGTGGGTATTTCTTGTA+AGG - chr5_3:5499066-5499085 None:intergenic 40.0%
TATCATGTATGTCCGTCTGT+GGG - chr5_3:5499080-5499099 None:intergenic 40.0%
TTATCATGTATGTCCGTCTG+TGG - chr5_3:5499081-5499100 None:intergenic 40.0%
AAGATGTAGGGGGAAATGAA+GGG - chr5_3:5499414-5499433 None:intergenic 40.0%
AAAGATGTAGGGGGAAATGA+AGG - chr5_3:5499415-5499434 None:intergenic 40.0%
TCTCACTTGAAGGAACATGT+GGG - chr5_3:5499656-5499675 None:intergenic 40.0%
ATCTCACTTGAAGGAACATG+TGG - chr5_3:5499657-5499676 None:intergenic 40.0%
! TACTTCCAGAGCAGTTCTAA+AGG + chr5_3:5499733-5499752 Msa0793530:intron 40.0%
!!! TGGCTTGCTTTTCGTGATTA+CGG + chr5_3:5499913-5499932 Msa0793530:CDS 40.0%
! AACTTTTGCATAGTCTGCTG+CGG - chr5_3:5499947-5499966 None:intergenic 40.0%
!! TCATGGAATAGCTTTGAACG+AGG + chr5_3:5499994-5500013 Msa0793530:CDS 40.0%
GCCAGTCAATGAAAAGAAGA+CGG + chr5_3:5500016-5500035 Msa0793530:CDS 40.0%
! ACCGTCTTCTTTTCATTGAC+TGG - chr5_3:5500020-5500039 None:intergenic 40.0%
GATAGATTACACCAGAGTCT+TGG + chr5_3:5500099-5500118 Msa0793530:CDS 40.0%
ATGTTAATGGTTGAGTGGGA+AGG - chr5_3:5500202-5500221 None:intergenic 40.0%
TAGTTATATCCCGTGCATTG+TGG + chr5_3:5498184-5498203 Msa0793530:five_prime_UTR 40.0%
ACTCCATTATCCACAATGCA+CGG - chr5_3:5498197-5498216 None:intergenic 40.0%
!! CATTGTGGATAATGGAGTGT+GGG + chr5_3:5498199-5498218 Msa0793530:five_prime_UTR 40.0%
AAGATGAAAGCAGGAAGAAG+AGG - chr5_3:5498262-5498281 None:intergenic 40.0%
! TTTGAGAGTGGATTTAGTGG+AGG - chr5_3:5498287-5498306 None:intergenic 40.0%
CATGAAACCATAGTTGCCAA+TGG - chr5_3:5498392-5498411 None:intergenic 40.0%
! GATCAATATTCACTTGGTGG+TGG + chr5_3:5498436-5498455 Msa0793530:CDS 40.0%
GATGCTTATACCAGTGGATA+AGG - chr5_3:5498728-5498747 None:intergenic 40.0%
AATGCAGATGCTTATACCAG+TGG - chr5_3:5498734-5498753 None:intergenic 40.0%
GTCTGTGGGTATTTCTTGTA+AGG - chr5_3:5499066-5499085 None:intergenic 40.0%
TATCATGTATGTCCGTCTGT+GGG - chr5_3:5499080-5499099 None:intergenic 40.0%
TTATCATGTATGTCCGTCTG+TGG - chr5_3:5499081-5499100 None:intergenic 40.0%
AAGATGTAGGGGGAAATGAA+GGG - chr5_3:5499414-5499433 None:intergenic 40.0%
AAAGATGTAGGGGGAAATGA+AGG - chr5_3:5499415-5499434 None:intergenic 40.0%
TCTCACTTGAAGGAACATGT+GGG - chr5_3:5499656-5499675 None:intergenic 40.0%
ATCTCACTTGAAGGAACATG+TGG - chr5_3:5499657-5499676 None:intergenic 40.0%
! TACTTCCAGAGCAGTTCTAA+AGG + chr5_3:5499733-5499752 Msa0793530:intron 40.0%
!!! TGGCTTGCTTTTCGTGATTA+CGG + chr5_3:5499913-5499932 Msa0793530:CDS 40.0%
! AACTTTTGCATAGTCTGCTG+CGG - chr5_3:5499947-5499966 None:intergenic 40.0%
!! TCATGGAATAGCTTTGAACG+AGG + chr5_3:5499994-5500013 Msa0793530:CDS 40.0%
GCCAGTCAATGAAAAGAAGA+CGG + chr5_3:5500016-5500035 Msa0793530:CDS 40.0%
! ACCGTCTTCTTTTCATTGAC+TGG - chr5_3:5500020-5500039 None:intergenic 40.0%
GATAGATTACACCAGAGTCT+TGG + chr5_3:5500099-5500118 Msa0793530:CDS 40.0%
ATGTTAATGGTTGAGTGGGA+AGG - chr5_3:5500202-5500221 None:intergenic 40.0%
ATCCCGTGCATTGTGGATAA+TGG + chr5_3:5498191-5498210 Msa0793530:five_prime_UTR 45.0%
CTCCATTATCCACAATGCAC+GGG - chr5_3:5498196-5498215 None:intergenic 45.0%
!! GCATTGTGGATAATGGAGTG+TGG + chr5_3:5498198-5498217 Msa0793530:five_prime_UTR 45.0%
GTGGAGGTTAAGATGAAAGC+AGG - chr5_3:5498271-5498290 None:intergenic 45.0%
!! AAACTCGGATTGGTTCCAAG+TGG + chr5_3:5498360-5498379 Msa0793530:CDS 45.0%
!! AACTCGGATTGGTTCCAAGT+GGG + chr5_3:5498361-5498380 Msa0793530:CDS 45.0%
AAGAAGGCAGCGTTAAGATC+AGG + chr5_3:5498479-5498498 Msa0793530:CDS 45.0%
AGCTTGATTGATTGCAGTGC+AGG + chr5_3:5498550-5498569 Msa0793530:intron 45.0%
! TTGCAGTGCAGGCTTTATGA+AGG + chr5_3:5498561-5498580 Msa0793530:intron 45.0%
TTATGAAGGCAGAGTTTCCC+AGG + chr5_3:5498575-5498594 Msa0793530:CDS 45.0%
TATGAAGGCAGAGTTTCCCA+GGG + chr5_3:5498576-5498595 Msa0793530:CDS 45.0%
AGTTTGTCTAAGTGGACCCT+GGG - chr5_3:5498595-5498614 None:intergenic 45.0%
AGAACGGGAGTTTGTCTAAG+TGG - chr5_3:5498603-5498622 None:intergenic 45.0%
GCCTTATGACACTTGTTCGT+TGG + chr5_3:5499326-5499345 Msa0793530:intron 45.0%
GCCAACGAACAAGTGTCATA+AGG - chr5_3:5499330-5499349 None:intergenic 45.0%
TATGCTATGTGTCCAGGGAA+AGG - chr5_3:5499373-5499392 None:intergenic 45.0%
TGGGGTTGTAGCAGATATGA+TGG + chr5_3:5499612-5499631 Msa0793530:CDS 45.0%
! GGTGGGTTTGAAACAACTAC+TGG + chr5_3:5499784-5499803 Msa0793530:CDS 45.0%
TGAAACAACTACTGGAGAGC+AGG + chr5_3:5499792-5499811 Msa0793530:CDS 45.0%
!! GGCTTGCTTTTCGTGATTAC+GGG + chr5_3:5499914-5499933 Msa0793530:CDS 45.0%
TGCAAAAGTTGCGAGTGAGA+AGG + chr5_3:5499957-5499976 Msa0793530:CDS 45.0%
CAGAAAATGGTCCAAGACTC+TGG - chr5_3:5500113-5500132 None:intergenic 45.0%
GATTCCAAGACTTAGGGACT+TGG + chr5_3:5500275-5500294 Msa0793530:CDS 45.0%
! TGGCCTTTTCTGTTAGTGTC+AGG + chr5_3:5500295-5500314 Msa0793530:CDS 45.0%
ATCCCGTGCATTGTGGATAA+TGG + chr5_3:5498191-5498210 Msa0793530:five_prime_UTR 45.0%
CTCCATTATCCACAATGCAC+GGG - chr5_3:5498196-5498215 None:intergenic 45.0%
!! GCATTGTGGATAATGGAGTG+TGG + chr5_3:5498198-5498217 Msa0793530:five_prime_UTR 45.0%
GTGGAGGTTAAGATGAAAGC+AGG - chr5_3:5498271-5498290 None:intergenic 45.0%
!! AAACTCGGATTGGTTCCAAG+TGG + chr5_3:5498360-5498379 Msa0793530:CDS 45.0%
!! AACTCGGATTGGTTCCAAGT+GGG + chr5_3:5498361-5498380 Msa0793530:CDS 45.0%
AAGAAGGCAGCGTTAAGATC+AGG + chr5_3:5498479-5498498 Msa0793530:CDS 45.0%
AGCTTGATTGATTGCAGTGC+AGG + chr5_3:5498550-5498569 Msa0793530:intron 45.0%
! TTGCAGTGCAGGCTTTATGA+AGG + chr5_3:5498561-5498580 Msa0793530:intron 45.0%
TTATGAAGGCAGAGTTTCCC+AGG + chr5_3:5498575-5498594 Msa0793530:CDS 45.0%
TATGAAGGCAGAGTTTCCCA+GGG + chr5_3:5498576-5498595 Msa0793530:CDS 45.0%
AGTTTGTCTAAGTGGACCCT+GGG - chr5_3:5498595-5498614 None:intergenic 45.0%
AGAACGGGAGTTTGTCTAAG+TGG - chr5_3:5498603-5498622 None:intergenic 45.0%
GCCTTATGACACTTGTTCGT+TGG + chr5_3:5499326-5499345 Msa0793530:intron 45.0%
GCCAACGAACAAGTGTCATA+AGG - chr5_3:5499330-5499349 None:intergenic 45.0%
TATGCTATGTGTCCAGGGAA+AGG - chr5_3:5499373-5499392 None:intergenic 45.0%
TGGGGTTGTAGCAGATATGA+TGG + chr5_3:5499612-5499631 Msa0793530:CDS 45.0%
! GGTGGGTTTGAAACAACTAC+TGG + chr5_3:5499784-5499803 Msa0793530:CDS 45.0%
TGAAACAACTACTGGAGAGC+AGG + chr5_3:5499792-5499811 Msa0793530:CDS 45.0%
!! GGCTTGCTTTTCGTGATTAC+GGG + chr5_3:5499914-5499933 Msa0793530:CDS 45.0%
TGCAAAAGTTGCGAGTGAGA+AGG + chr5_3:5499957-5499976 Msa0793530:CDS 45.0%
CAGAAAATGGTCCAAGACTC+TGG - chr5_3:5500113-5500132 None:intergenic 45.0%
GATTCCAAGACTTAGGGACT+TGG + chr5_3:5500275-5500294 Msa0793530:CDS 45.0%
! TGGCCTTTTCTGTTAGTGTC+AGG + chr5_3:5500295-5500314 Msa0793530:CDS 45.0%
GCAACGCCCATGCTTGTAAA+CGG - chr5_3:5498232-5498251 None:intergenic 50.0%
GAGTTTGTCTAAGTGGACCC+TGG - chr5_3:5498596-5498615 None:intergenic 50.0%
! CTTCTTCAGGGTGCTTTGAG+AGG + chr5_3:5500054-5500073 Msa0793530:CDS 50.0%
!! TCAGGGTGCTTTGAGAGGTT+TGG + chr5_3:5500059-5500078 Msa0793530:CDS 50.0%
AAGGCCAAGTCCCTAAGTCT+TGG - chr5_3:5500282-5500301 None:intergenic 50.0%
GCAACGCCCATGCTTGTAAA+CGG - chr5_3:5498232-5498251 None:intergenic 50.0%
GAGTTTGTCTAAGTGGACCC+TGG - chr5_3:5498596-5498615 None:intergenic 50.0%
! CTTCTTCAGGGTGCTTTGAG+AGG + chr5_3:5500054-5500073 Msa0793530:CDS 50.0%
!! TCAGGGTGCTTTGAGAGGTT+TGG + chr5_3:5500059-5500078 Msa0793530:CDS 50.0%
AAGGCCAAGTCCCTAAGTCT+TGG - chr5_3:5500282-5500301 None:intergenic 50.0%
TTCCAAGTGGGTCGAGCCAT+TGG + chr5_3:5498373-5498392 Msa0793530:CDS 55.0%
GGTCGAGCCATTGGCAACTA+TGG + chr5_3:5498382-5498401 Msa0793530:CDS 55.0%
GTTTATCCCGGAACACGAGC+TGG + chr5_3:5499589-5499608 Msa0793530:CDS 55.0%
TTCCAAGTGGGTCGAGCCAT+TGG + chr5_3:5498373-5498392 Msa0793530:CDS 55.0%
GGTCGAGCCATTGGCAACTA+TGG + chr5_3:5498382-5498401 Msa0793530:CDS 55.0%
GTTTATCCCGGAACACGAGC+TGG + chr5_3:5499589-5499608 Msa0793530:CDS 55.0%
TGCCAATGGCTCGACCCACT+TGG - chr5_3:5498378-5498397 None:intergenic 60.0%
TATCCCGGAACACGAGCTGG+TGG + chr5_3:5499592-5499611 Msa0793530:CDS 60.0%
ATCCCGGAACACGAGCTGGT+GGG + chr5_3:5499593-5499612 Msa0793530:CDS 60.0%
AACCCCACCAGCTCGTGTTC+CGG - chr5_3:5499599-5499618 None:intergenic 60.0%
TGCCAATGGCTCGACCCACT+TGG - chr5_3:5498378-5498397 None:intergenic 60.0%
TATCCCGGAACACGAGCTGG+TGG + chr5_3:5499592-5499611 Msa0793530:CDS 60.0%
ATCCCGGAACACGAGCTGGT+GGG + chr5_3:5499593-5499612 Msa0793530:CDS 60.0%
AACCCCACCAGCTCGTGTTC+CGG - chr5_3:5499599-5499618 None:intergenic 60.0%
TCCCGGAACACGAGCTGGTG+GGG + chr5_3:5499594-5499613 Msa0793530:CDS 65.0%
ACCCCACCAGCTCGTGTTCC+GGG - chr5_3:5499598-5499617 None:intergenic 65.0%
TCCCGGAACACGAGCTGGTG+GGG + chr5_3:5499594-5499613 Msa0793530:CDS 65.0%
ACCCCACCAGCTCGTGTTCC+GGG - chr5_3:5499598-5499617 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 5498164 5500320 5498164 ID=Msa0793530;Name=Msa0793530
chr5_3 mRNA 5498164 5500320 5498164 ID=Msa0793530-mRNA-1;Parent=Msa0793530;Name=Msa0793530-mRNA-1;_AED=0.14;_eAED=0.14;_QI=77|1|0.83|1|1|1|6|0|258
chr5_3 exon 5498164 5498500 5498164 ID=Msa0793530-mRNA-1:exon:2147;Parent=Msa0793530-mRNA-1
chr5_3 exon 5498572 5498629 5498572 ID=Msa0793530-mRNA-1:exon:2148;Parent=Msa0793530-mRNA-1
chr5_3 exon 5499589 5499669 5499589 ID=Msa0793530-mRNA-1:exon:2149;Parent=Msa0793530-mRNA-1
chr5_3 exon 5499742 5499813 5499742 ID=Msa0793530-mRNA-1:exon:2150;Parent=Msa0793530-mRNA-1
chr5_3 exon 5499913 5500142 5499913 ID=Msa0793530-mRNA-1:exon:2151;Parent=Msa0793530-mRNA-1
chr5_3 exon 5500245 5500320 5500245 ID=Msa0793530-mRNA-1:exon:2152;Parent=Msa0793530-mRNA-1
chr5_3 five_prime_UTR 5498164 5498240 5498164 ID=Msa0793530-mRNA-1:five_prime_utr;Parent=Msa0793530-mRNA-1
chr5_3 CDS 5498241 5498500 5498241 ID=Msa0793530-mRNA-1:cds;Parent=Msa0793530-mRNA-1
chr5_3 CDS 5498572 5498629 5498572 ID=Msa0793530-mRNA-1:cds;Parent=Msa0793530-mRNA-1
chr5_3 CDS 5499589 5499669 5499589 ID=Msa0793530-mRNA-1:cds;Parent=Msa0793530-mRNA-1
chr5_3 CDS 5499742 5499813 5499742 ID=Msa0793530-mRNA-1:cds;Parent=Msa0793530-mRNA-1
chr5_3 CDS 5499913 5500142 5499913 ID=Msa0793530-mRNA-1:cds;Parent=Msa0793530-mRNA-1
chr5_3 CDS 5500245 5500320 5500245 ID=Msa0793530-mRNA-1:cds;Parent=Msa0793530-mRNA-1
Gene Sequence

>Msa0793530

ATGGGCGTTGCTGCTTTTCCTCTTCTTCCTGCTTTCATCTTAACCTCCACTAAATCCACTCTCAAATTTCAAGTAAAAGCTAATTATAATGATAATAGTAATGGCTTCAACTTTATCACAAACTCGGATTGGTTCCAAGTGGGTCGAGCCATTGGCAACTATGGTTTCATGAACGTTACTACTACTTCTAGTACTGATCAATATTCACTTGGTGGTGGATTGAAAACTCAAGATGTTCAAGAAGGCAGCGTTAAGATCAGGCTTTATGAAGGCAGAGTTTCCCAGGGTCCACTTAGACAAACTCCCGTTCTTTTTAAGGTTTATCCCGGAACACGAGCTGGTGGGGTTGTAGCAGATATGATGGCTGCAAACGAGTTGAATTCCCACATGTTCCTTCAAAGCAGTTCTAAAGGTATTAGTCAGCATCTTATGTTACTTTTAGGTGGGTTTGAAACAACTACTGGAGAGCAGTGGCTTGCTTTTCGTGATTACGGGAAATCTACCGCAGCAGACTATGCAAAAGTTGCGAGTGAGAAGGTATCAAAACTGTCTTCATGGAATAGCTTTGAACGAGGCCAGTCAATGAAAAGAAGACGGTGTTTCATTATAAAGCTTCTTCAGGGTGCTTTGAGAGGTTTGGCTTACATGCACGATCATGATAGATTACACCAGAGTCTTGGACCATTTTCTGTATCTCTCAACACAATATCTGAAAGTGAAGCTCCTTATTTGATTCCAAGACTTAGGGACTTGGCCTTTTCTGTTAGTGTCAGGTAA

Protein sequence

>Msa0793530

MGVAAFPLLPAFILTSTKSTLKFQVKANYNDNSNGFNFITNSDWFQVGRAIGNYGFMNVTTTSSTDQYSLGGGLKTQDVQEGSVKIRLYEGRVSQGPLRQTPVLFKVYPGTRAGGVVADMMAANELNSHMFLQSSSKGISQHLMLLLGGFETTTGEQWLAFRDYGKSTAADYAKVASEKVSKLSSWNSFERGQSMKRRRCFIIKLLQGALRGLAYMHDHDRLHQSLGPFSVSLNTISESEAPYLIPRLRDLAFSVSVR*