AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0792180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792180 MtrunA17_Chr4g0076731 94.183 447 9 5 1 443 1 434 0.0 864
Msa0792180 MtrunA17_Chr5g0417001 47.343 207 94 4 46 241 1 203 5.51e-61 203
Msa0792180 MtrunA17_Chr6g0453131 52.695 167 68 2 52 207 8 174 2.61e-60 201
Msa0792180 MtrunA17_Chr8g0361731 53.049 164 65 3 56 207 11 174 1.76e-59 199
Msa0792180 MtrunA17_Chr5g0442771 43.956 273 118 9 48 290 7 274 2.28e-59 196
Msa0792180 MtrunA17_Chr4g0038751 53.947 152 65 2 58 207 14 162 2.32e-56 188
Msa0792180 MtrunA17_Chr8g0359921 58.000 150 58 2 61 206 16 164 1.72e-55 187
Msa0792180 MtrunA17_Chr2g0318081 56.051 157 62 3 61 213 18 171 2.56e-55 187
Msa0792180 MtrunA17_Chr3g0124761 55.000 160 64 3 61 214 9 166 5.32e-54 182
Msa0792180 MtrunA17_Chr2g0318101 50.299 167 69 2 61 213 17 183 1.05e-53 183
Msa0792180 MtrunA17_Chr4g0047841 47.283 184 71 3 56 213 12 195 1.12e-52 180
Msa0792180 MtrunA17_Chr3g0130731 53.595 153 64 2 61 208 9 159 1.44e-52 178
Msa0792180 MtrunA17_Chr8g0384721 53.247 154 64 2 61 208 9 160 3.56e-52 177
Msa0792180 MtrunA17_Chr6g0481091 52.288 153 68 3 61 209 8 159 1.38e-51 174
Msa0792180 MtrunA17_Chr7g0252971 44.059 202 86 4 61 246 10 200 3.11e-51 176
Msa0792180 MtrunA17_Chr2g0311651 50.279 179 66 5 45 206 14 186 7.90e-51 174
Msa0792180 MtrunA17_Chr2g0311661 50.279 179 65 5 45 206 14 185 9.17e-51 173
Msa0792180 MtrunA17_Chr3g0109821 52.597 154 67 3 61 209 8 160 1.55e-50 181
Msa0792180 MtrunA17_Chr2g0326361 45.745 188 87 5 61 234 16 202 1.81e-50 173
Msa0792180 MtrunA17_Chr2g0309891 51.316 152 68 3 61 207 8 158 4.18e-50 173
Msa0792180 MtrunA17_Chr5g0400461 51.299 154 66 3 61 206 8 160 2.07e-49 171
Msa0792180 MtrunA17_Chr5g0417791 48.810 168 70 5 61 214 5 170 5.93e-49 167
Msa0792180 MtrunA17_Chr5g0433781 52.288 153 68 3 61 209 8 159 1.10e-48 176
Msa0792180 MtrunA17_Chr4g0042561 50.658 152 68 3 61 206 11 161 1.80e-48 167
Msa0792180 MtrunA17_Chr7g0263931 48.795 166 78 2 50 208 2 167 2.29e-48 168
Msa0792180 MtrunA17_Chr3g0139331 49.032 155 78 1 55 208 7 161 8.37e-48 167
Msa0792180 MtrunA17_Chr6g0484441 48.077 156 74 2 61 213 7 158 2.46e-47 165
Msa0792180 MtrunA17_Chr4g0054791 52.632 152 66 3 61 206 8 159 3.67e-47 164
Msa0792180 MtrunA17_Chr4g0056541 48.344 151 74 2 59 206 7 156 6.84e-47 165
Msa0792180 MtrunA17_Chr5g0398971 47.712 153 74 3 59 206 7 158 1.69e-46 164
Msa0792180 MtrunA17_Chr4g0060931 45.856 181 82 5 43 214 4 177 2.04e-46 164
Msa0792180 MtrunA17_Chr4g0018391 47.682 151 75 2 59 206 7 156 3.48e-46 163
Msa0792180 MtrunA17_Chr2g0316971 51.316 152 69 2 61 207 25 176 4.07e-46 164
Msa0792180 MtrunA17_Chr2g0309331 48.026 152 76 1 58 206 9 160 6.60e-46 162
Msa0792180 MtrunA17_Chr8g0364791 46.154 156 75 4 59 208 6 158 6.80e-46 164
Msa0792180 MtrunA17_Chr3g0091921 48.701 154 74 2 58 207 15 167 2.14e-45 159
Msa0792180 MtrunA17_Chr8g0384201 44.872 156 77 4 59 208 6 158 3.67e-45 164
Msa0792180 MtrunA17_Chr5g0428991 52.349 149 66 3 62 206 28 175 5.15e-45 166
Msa0792180 MtrunA17_Chr6g0453451 50.649 154 69 3 61 209 22 173 6.42e-45 159
Msa0792180 MtrunA17_Chr1g0147421 46.012 163 85 3 55 214 23 185 1.23e-44 159
Msa0792180 MtrunA17_Chr1g0201021 50.327 153 71 3 60 208 20 171 1.34e-44 163
Msa0792180 MtrunA17_Chr4g0017921 46.753 154 77 3 59 209 8 159 2.08e-44 158
Msa0792180 MtrunA17_Chr3g0130101 45.570 158 81 3 55 208 3 159 7.27e-44 157
Msa0792180 MtrunA17_Chr5g0405211 45.223 157 82 2 53 206 2 157 8.94e-44 157
Msa0792180 MtrunA17_Chr3g0128151 49.664 149 70 3 62 206 25 172 1.54e-43 161
Msa0792180 MtrunA17_Chr3g0128111 39.286 196 103 4 15 206 9 192 1.64e-43 153
Msa0792180 MtrunA17_Chr1g0200561 44.654 159 84 2 58 213 18 175 3.93e-43 155
Msa0792180 MtrunA17_Chr3g0144271 49.342 152 72 3 61 207 25 176 1.23e-42 155
Msa0792180 MtrunA17_Chr8g0372121 46.711 152 77 2 58 206 5 155 2.08e-42 152
Msa0792180 MtrunA17_Chr7g0253011 47.059 153 74 3 61 206 19 171 1.13e-41 152
Msa0792180 MtrunA17_Chr1g0197351 48.447 161 72 3 59 209 42 201 2.86e-41 153
Msa0792180 MtrunA17_Chr6g0461661 48.252 143 64 2 62 203 21 154 4.82e-41 150
Msa0792180 MtrunA17_Chr1g0183741 41.176 204 99 6 61 246 12 212 1.48e-40 146
Msa0792180 MtrunA17_Chr3g0092671 44.737 152 79 4 61 208 7 157 1.67e-40 152
Msa0792180 MtrunA17_Chr8g0346001 42.593 162 78 3 59 206 15 175 1.86e-40 149
Msa0792180 MtrunA17_Chr2g0312321 37.903 248 128 8 61 292 13 250 2.42e-40 146
Msa0792180 MtrunA17_Chr7g0217721 42.593 162 75 2 62 206 22 182 2.06e-39 145
Msa0792180 MtrunA17_Chr7g0214071 45.614 171 85 4 61 228 17 182 7.57e-39 140
Msa0792180 MtrunA17_Chr7g0261411 47.945 146 71 3 61 204 12 154 9.32e-39 141
Msa0792180 MtrunA17_Chr7g0217711 50.806 124 60 1 62 185 22 144 1.54e-38 137
Msa0792180 MtrunA17_Chr1g0197361 42.105 152 83 4 61 208 10 160 1.71e-38 147
Msa0792180 MtrunA17_Chr4g0026141 39.196 199 104 5 56 237 2 200 2.43e-38 139
Msa0792180 MtrunA17_Chr7g0266701 40.854 164 84 4 57 207 2 165 7.29e-38 138
Msa0792180 MtrunA17_Chr2g0321631 43.478 161 76 4 61 208 6 164 1.91e-37 137
Msa0792180 MtrunA17_Chr8g0385991 46.250 160 74 5 61 210 16 173 3.01e-37 135
Msa0792180 MtrunA17_Chr8g0345671 45.223 157 71 8 54 203 7 155 6.67e-34 131
Msa0792180 MtrunA17_Chr3g0131911 41.463 164 81 4 61 211 16 177 1.66e-32 123
Msa0792180 MtrunA17_Chr8g0345691 42.384 151 79 5 57 203 10 156 2.38e-31 124
Msa0792180 MtrunA17_Chr8g0345711 42.424 132 71 4 56 183 9 139 4.89e-29 112
Msa0792180 MtrunA17_Chr2g0321741 48.113 106 53 2 79 183 12 116 1.58e-28 115
Msa0792180 MtrunA17_Chr3g0113001 38.342 193 78 7 104 270 10 187 3.62e-26 107
Msa0792180 MtrunA17_Chr4g0050701 38.065 155 79 3 61 206 13 159 6.27e-26 103
Msa0792180 MtrunA17_Chr8g0345731 40.602 133 73 4 57 183 22 154 9.18e-24 97.4
Msa0792180 MtrunA17_Chr7g0243371 57.333 75 31 1 112 185 17 91 9.29e-23 93.2
Msa0792180 MtrunA17_Chr8g0345721 36.774 155 64 5 62 183 38 191 1.98e-22 95.1
Msa0792180 MtrunA17_Chr8g0345741 35.948 153 82 6 70 214 2 146 8.73e-21 88.6
Msa0792180 MtrunA17_Chr8g0345701 39.474 152 69 8 60 191 7 155 2.29e-20 88.2
Msa0792180 MtrunA17_Chr8g0384351 36.986 146 73 5 61 206 12 138 4.25e-19 84.7
Msa0792180 MtrunA17_Chr3g0113031 35.795 176 71 7 122 270 3 163 1.26e-17 82.8
Msa0792180 MtrunA17_Chr7g0251661 31.538 130 83 4 57 183 7 133 2.08e-13 67.8
Msa0792180 MtrunA17_Chr7g0251651 31.081 148 93 5 62 205 21 163 3.24e-13 68.2
Msa0792180 MtrunA17_Chr1g0194791 54.167 48 21 1 61 107 48 95 1.03e-12 64.3
Msa0792180 MtrunA17_Chr3g0130321 29.114 158 93 4 61 205 9 160 1.11e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792180 AT5G39820.1 50.000 202 74 5 43 217 2 203 1.21e-62 206
Msa0792180 AT2G17040.1 57.516 153 60 2 57 207 4 153 2.79e-60 198
Msa0792180 AT1G26870.1 47.059 204 96 3 48 239 5 208 1.06e-59 201
Msa0792180 AT2G43000.1 46.875 192 96 3 51 237 10 200 7.36e-58 192
Msa0792180 AT4G27410.2 58.108 148 59 2 61 206 16 162 1.72e-56 189
Msa0792180 AT3G15500.1 58.784 148 58 2 61 206 16 162 4.71e-56 188
Msa0792180 AT1G52890.1 58.784 148 58 2 61 206 16 162 5.55e-55 186
Msa0792180 AT1G61110.1 51.124 178 72 3 56 219 13 189 3.00e-54 184
Msa0792180 AT1G01720.1 55.696 158 62 3 61 212 9 164 8.31e-54 181
Msa0792180 AT3G04070.2 40.996 261 122 9 61 307 12 254 4.24e-53 181
Msa0792180 AT1G77450.1 55.844 154 61 2 61 209 12 163 4.56e-53 178
Msa0792180 AT5G08790.1 52.258 155 65 2 62 209 10 162 4.67e-53 179
Msa0792180 AT5G63790.1 53.247 154 63 2 62 208 53 204 4.06e-52 178
Msa0792180 AT4G27410.3 52.121 165 59 3 61 206 16 179 4.38e-52 178
Msa0792180 AT5G63790.2 53.247 154 63 2 62 208 63 214 5.31e-52 178
Msa0792180 AT3G15510.1 50.000 164 68 2 63 212 21 184 1.15e-51 178
Msa0792180 AT5G17260.1 52.532 158 69 3 61 213 8 164 2.29e-51 180
Msa0792180 AT3G03200.1 52.532 158 69 3 61 213 8 164 5.13e-51 179
Msa0792180 AT3G04070.1 38.628 277 122 9 61 307 12 270 1.00e-50 176
Msa0792180 AT5G46590.1 54.730 148 62 2 61 203 8 155 8.96e-50 171
Msa0792180 AT1G69490.1 50.641 156 66 3 61 208 11 163 1.18e-49 170
Msa0792180 AT3G17730.1 49.673 153 72 3 61 209 8 159 1.53e-49 169
Msa0792180 AT4G17980.1 51.634 153 67 3 61 206 8 160 2.09e-49 169
Msa0792180 AT4G17980.2 51.634 153 67 3 61 206 8 160 2.65e-49 170
Msa0792180 AT3G15170.1 51.948 154 69 2 61 209 22 175 3.36e-48 167
Msa0792180 AT1G65910.1 50.980 153 70 3 61 209 8 159 3.50e-48 174
Msa0792180 AT5G46590.2 56.818 132 55 1 61 190 8 139 1.60e-47 165
Msa0792180 AT5G07680.1 50.877 171 71 5 51 213 10 175 1.99e-47 166
Msa0792180 AT1G32510.1 48.555 173 74 4 61 222 8 176 5.37e-47 164
Msa0792180 AT5G61430.1 50.980 153 68 3 61 208 18 168 5.52e-47 165
Msa0792180 AT1G76420.1 51.333 150 71 2 61 208 24 173 6.01e-47 165
Msa0792180 AT3G10490.1 48.718 156 74 3 59 209 27 181 7.44e-47 162
Msa0792180 AT1G52880.1 52.866 157 61 3 63 206 21 177 9.28e-47 164
Msa0792180 AT1G34180.3 50.980 153 70 3 61 209 18 169 9.49e-47 167
Msa0792180 AT5G07680.2 52.174 161 65 4 61 213 5 161 1.39e-46 163
Msa0792180 AT3G10480.1 48.718 156 74 3 59 209 27 181 1.45e-46 167
Msa0792180 AT1G12260.1 49.669 151 72 2 59 206 7 156 1.58e-46 165
Msa0792180 AT1G12260.2 49.669 151 72 2 59 206 7 156 2.02e-46 164
Msa0792180 AT3G10480.2 49.045 157 71 4 59 209 27 180 2.33e-46 166
Msa0792180 AT3G10490.2 48.718 156 74 3 59 209 27 181 5.23e-46 165
Msa0792180 AT1G34180.1 51.316 152 69 3 61 208 18 168 6.68e-46 167
Msa0792180 AT2G24430.2 47.205 161 83 2 48 206 5 165 8.83e-46 161
Msa0792180 AT2G24430.1 47.205 161 83 2 48 206 5 165 8.83e-46 161
Msa0792180 AT3G04060.1 50.000 150 71 1 61 206 22 171 8.84e-46 162
Msa0792180 AT5G39610.1 49.686 159 75 3 52 206 13 170 1.29e-45 160
Msa0792180 AT3G18400.1 50.331 151 67 3 61 207 7 153 3.10e-45 160
Msa0792180 AT1G33280.1 47.403 154 76 3 59 209 8 159 3.27e-45 159
Msa0792180 AT3G29035.1 44.670 197 92 7 45 230 11 201 6.61e-45 159
Msa0792180 AT1G62700.1 49.007 151 73 2 59 206 7 156 8.80e-45 160
Msa0792180 AT1G62700.2 49.007 151 73 2 59 206 7 156 8.80e-45 160
Msa0792180 AT1G34190.1 50.000 152 71 3 61 208 18 168 9.54e-45 164
Msa0792180 AT1G54330.1 52.027 148 67 3 61 206 8 153 1.94e-44 157
Msa0792180 AT1G79580.3 49.007 151 73 2 59 206 17 166 2.34e-44 159
Msa0792180 AT1G79580.5 49.007 151 73 2 59 206 17 166 2.34e-44 159
Msa0792180 AT1G79580.4 49.007 151 73 2 59 206 17 166 2.34e-44 159
Msa0792180 AT1G79580.2 49.007 151 73 2 59 206 17 166 2.34e-44 159
Msa0792180 AT1G79580.1 49.007 151 73 2 59 206 17 166 2.34e-44 159
Msa0792180 AT4G35580.1 51.678 149 67 3 62 206 12 159 3.05e-44 162
Msa0792180 AT4G35580.3 51.678 149 67 3 62 206 12 159 3.40e-44 162
Msa0792180 AT4G35580.2 51.678 149 67 3 62 206 12 159 3.63e-44 162
Msa0792180 AT5G24590.2 44.025 159 85 2 62 216 16 174 4.24e-44 160
Msa0792180 AT1G34180.4 46.667 165 71 3 61 209 18 181 6.02e-44 160
Msa0792180 AT5G53950.1 49.689 161 74 3 53 206 9 169 6.49e-44 158
Msa0792180 AT5G18270.2 48.667 150 73 1 61 206 23 172 1.53e-43 156
Msa0792180 AT1G71930.2 45.638 149 77 2 61 206 11 158 2.41e-43 155
Msa0792180 AT1G71930.1 45.638 149 77 2 61 206 11 158 2.41e-43 155
Msa0792180 AT4G10350.1 45.513 156 79 3 59 209 9 163 2.59e-43 155
Msa0792180 AT1G34180.2 46.951 164 70 3 61 208 18 180 3.03e-43 160
Msa0792180 AT4G36160.1 47.682 151 75 2 59 206 10 159 3.04e-43 156
Msa0792180 AT4G36160.3 47.682 151 75 2 59 206 10 159 3.04e-43 156
Msa0792180 AT5G18270.1 48.667 150 73 1 61 206 23 172 3.20e-43 155
Msa0792180 AT1G33060.2 48.993 149 71 3 62 206 27 174 3.22e-43 161
Msa0792180 AT1G33060.1 48.993 149 71 3 62 206 27 174 3.35e-43 161
Msa0792180 AT4G36160.2 47.682 151 75 2 59 206 14 163 3.49e-43 156
Msa0792180 AT5G04410.1 46.452 155 76 4 59 208 9 161 3.61e-43 160
Msa0792180 AT2G18060.3 46.358 151 77 2 59 206 9 158 5.23e-43 155
Msa0792180 AT2G18060.1 46.358 151 77 2 59 206 9 158 5.23e-43 155
Msa0792180 AT3G10500.1 44.805 154 80 3 59 208 9 161 6.96e-43 159
Msa0792180 AT3G49530.2 44.295 149 79 2 62 206 16 164 1.20e-41 152
Msa0792180 AT2G46770.1 43.195 169 77 5 59 209 16 183 1.58e-41 151
Msa0792180 AT5G62380.2 43.210 162 88 2 61 219 9 169 1.71e-41 150
Msa0792180 AT5G62380.1 43.210 162 88 2 61 219 9 169 1.71e-41 150
Msa0792180 AT3G49530.1 43.478 161 83 3 62 214 16 176 2.61e-41 153
Msa0792180 AT3G61910.1 50.000 132 62 2 59 187 11 141 2.96e-41 150
Msa0792180 AT3G12910.1 44.134 179 81 4 47 207 9 186 8.33e-41 147
Msa0792180 AT5G66300.1 44.737 152 79 3 59 206 12 162 1.05e-40 147
Msa0792180 AT3G12977.1 46.309 149 76 2 61 206 20 167 1.13e-40 147
Msa0792180 AT3G10480.3 41.270 189 72 4 59 209 27 214 1.33e-40 152
Msa0792180 AT1G32770.1 40.571 175 85 4 59 215 16 189 2.61e-40 148
Msa0792180 AT1G56010.2 44.079 152 78 3 61 206 21 171 5.38e-40 146
Msa0792180 AT2G33480.2 50.000 144 68 2 61 204 17 156 5.05e-39 142
Msa0792180 AT5G13180.1 51.316 152 67 4 61 208 16 164 9.71e-39 140
Msa0792180 AT2G33480.1 50.685 146 66 3 61 204 17 158 1.35e-38 140
Msa0792180 AT4G28530.1 44.242 165 71 4 61 207 12 173 3.85e-38 142
Msa0792180 AT5G64060.1 34.855 241 135 6 59 295 6 228 7.06e-38 141
Msa0792180 AT5G09330.5 42.208 154 84 3 59 208 6 158 1.42e-37 143
Msa0792180 AT5G09330.2 42.208 154 84 3 59 208 6 158 1.42e-37 143
Msa0792180 AT5G09330.4 42.208 154 84 3 59 208 6 158 1.42e-37 143
Msa0792180 AT5G09330.3 42.208 154 84 3 59 208 6 158 1.42e-37 143
Msa0792180 AT5G09330.1 42.208 154 84 3 59 208 6 158 1.42e-37 143
Msa0792180 AT2G27300.1 41.830 153 76 4 59 207 14 157 1.92e-36 137
Msa0792180 AT5G22380.1 45.679 162 78 4 57 208 3 164 2.01e-36 134
Msa0792180 AT3G44350.2 40.099 202 96 7 62 240 8 207 6.36e-36 133
Msa0792180 AT5G22290.1 44.604 139 75 2 46 183 8 145 1.35e-35 134
Msa0792180 AT1G32870.1 46.875 160 76 4 55 208 6 162 2.48e-35 137
Msa0792180 AT1G32870.2 46.875 160 76 4 55 208 6 162 2.69e-35 137
Msa0792180 AT1G32870.3 46.875 160 76 4 55 208 42 198 6.05e-35 137
Msa0792180 AT3G44290.2 44.800 125 67 2 60 183 15 138 3.89e-34 127
Msa0792180 AT3G44290.1 44.800 125 67 2 60 183 15 138 2.60e-33 128
Msa0792180 AT3G44350.1 47.692 130 59 3 62 184 8 135 3.33e-32 120
Msa0792180 AT5G04395.1 39.583 144 72 2 61 189 30 173 1.11e-31 120
Msa0792180 AT4G01550.1 41.104 163 82 6 60 214 5 161 5.38e-30 121
Msa0792180 AT5G61430.2 50.467 107 46 3 107 208 1 105 9.73e-29 114
Msa0792180 AT3G12977.2 50.000 102 47 2 108 206 14 114 4.42e-27 108
Msa0792180 AT1G56010.1 47.619 105 49 2 107 206 1 104 4.75e-27 109
Msa0792180 AT4G01520.1 40.881 159 78 7 62 210 7 159 6.57e-26 107
Msa0792180 AT4G01540.3 41.509 159 77 7 62 210 7 159 2.00e-25 108
Msa0792180 AT4G01540.4 41.509 159 77 7 62 210 7 159 2.99e-25 107
Msa0792180 AT4G01540.1 41.509 159 77 7 62 210 7 159 4.76e-25 107
Msa0792180 AT5G64530.2 44.531 128 56 5 61 186 5 119 4.85e-25 100
Msa0792180 AT5G64530.1 44.531 128 56 5 61 186 5 119 5.22e-25 101
Msa0792180 AT4G01540.2 41.509 159 77 7 62 210 7 159 5.27e-25 107
Msa0792180 AT4G10350.2 43.119 109 59 2 103 209 9 116 4.78e-24 102
Msa0792180 AT4G28530.2 42.636 129 51 4 61 169 12 137 1.38e-23 100
Msa0792180 AT2G43000.2 41.803 122 65 3 121 237 2 122 2.89e-23 97.4
Msa0792180 AT2G33480.3 50.526 95 44 2 112 204 8 101 1.23e-22 95.9
Msa0792180 AT1G02250.1 41.406 128 66 5 62 183 6 130 9.54e-22 96.7
Msa0792180 AT1G02230.1 36.667 150 80 7 62 203 6 148 1.90e-21 95.9
Msa0792180 AT3G04420.2 40.476 126 70 3 62 183 6 130 3.62e-21 93.6
Msa0792180 AT3G04420.1 40.476 126 70 3 62 183 6 130 3.96e-21 94.4
Msa0792180 AT3G10490.4 50.617 81 36 2 132 209 2 81 1.96e-19 89.7
Msa0792180 AT3G10490.3 50.617 81 36 2 132 209 2 81 1.96e-19 89.7
Msa0792180 AT1G02220.1 36.076 158 82 6 62 211 6 152 3.27e-18 86.7
Msa0792180 AT1G01010.1 36.620 142 74 7 62 189 6 145 3.64e-18 86.7
Msa0792180 AT5G50820.1 35.000 160 74 7 61 205 19 163 1.37e-14 72.4
Msa0792180 AT3G56530.1 30.405 148 97 4 61 204 54 199 1.86e-14 74.3
Msa0792180 AT3G04430.1 39.252 107 62 3 65 169 6 111 3.12e-14 71.6
Msa0792180 AT2G18060.2 44.286 70 38 1 137 206 2 70 1.84e-13 70.9
Msa0792180 AT5G14000.1 31.544 149 96 4 62 208 18 162 6.72e-13 68.2
Msa0792180 AT5G14000.2 32.540 126 80 3 62 185 18 140 1.10e-11 63.2

Find 127 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTAACAACTTCTGGTTAT+TGG 0.211019 5_3:+3295623 Msa0792180:CDS
GATGATGATGGTCGTGTAAT+TGG 0.239615 5_3:-3296652 None:intergenic
TTCTAATTGCTCTGATTATT+CGG 0.257989 5_3:+3297459 Msa0792180:three_prime_UTR
TAAGCAGCAAAATGAAATAT+TGG 0.264868 5_3:+3296711 Msa0792180:CDS
ACTGAAAACTTTCGTTCAAT+TGG 0.296485 5_3:+3295676 Msa0792180:CDS
CCTAATCGTGTAACAACTTC+TGG 0.308486 5_3:+3295616 Msa0792180:CDS
CCAGAAGTTGTTACACGATT+AGG 0.317297 5_3:-3295616 None:intergenic
ATATCGTTCGGTTTCATGTT+GGG 0.335622 5_3:-3295782 None:intergenic
AAGGAGGTTGGAAATTGATT+TGG 0.344511 5_3:-3297222 None:intergenic
TGAAGCTGAGACTGGGAAAA+TGG 0.347823 5_3:-3297025 None:intergenic
GCTGCCGCTGAAGCTGAGAC+TGG 0.355613 5_3:-3297033 None:intergenic
TGCATTATATAGTAGGTAGT+AGG 0.357995 5_3:-3297376 None:intergenic
TATGACCCTTGGGAACTTCC+TGG 0.368869 5_3:+3295182 Msa0792180:CDS
GTAGACAAATGATTGGGATT+TGG 0.373594 5_3:-3297177 None:intergenic
CAACTGGTTCGGATGCCTTT+GGG 0.374805 5_3:-3295736 None:intergenic
CCAACTGGTTCGGATGCCTT+TGG 0.377419 5_3:-3295737 None:intergenic
AAGCAGCAAAATGAAATATT+GGG 0.379687 5_3:+3296712 Msa0792180:CDS
TATATATGTTATTGAAATCA+TGG 0.380572 5_3:-3297490 None:intergenic
ATCTTTATCGCTATGACCCT+TGG 0.382909 5_3:+3295171 Msa0792180:CDS
ATGTATTTGCATTATATAGT+AGG 0.386019 5_3:-3297383 None:intergenic
TGATCACATAGTTAACAAAA+TGG 0.392091 5_3:+3296774 Msa0792180:CDS
GTATAAAAGAGGAGAGAAAA+GGG 0.392745 5_3:+3294836 None:intergenic
TGTTAGTTAGTTAGAGAGAG+TGG 0.399180 5_3:+3294865 Msa0792180:five_prime_UTR
AAGCTCATGCTGCTCATGTT+AGG 0.402422 5_3:-3294927 None:intergenic
TCTTCTGAACGGTAATTAGT+AGG 0.410368 5_3:-3296874 None:intergenic
GATCATGTCACAACCACTCT+TGG 0.411521 5_3:+3296823 Msa0792180:CDS
ATGTGATCATCAATTGTCTT+TGG 0.414276 5_3:-3296760 None:intergenic
ATGATGATGGTCGTGTAATT+GGG 0.415001 5_3:-3296651 None:intergenic
GAGGTGTTGTTACTACTGTT+GGG 0.428986 5_3:-3297294 None:intergenic
TGCAGCACTGGTAGCAGTAT+TGG 0.434071 5_3:-3297070 None:intergenic
TTGGGGTGATTATGATCCTC+AGG 0.436862 5_3:-3297276 None:intergenic
CAGCAATGTAGACAAATGAT+TGG 0.439526 5_3:-3297184 None:intergenic
TCTGGTTATTGGAAAGCAAC+AGG 0.440994 5_3:+3295634 Msa0792180:CDS
GATATCGTTCGGTTTCATGT+TGG 0.441960 5_3:-3295783 None:intergenic
AGTTGATAACTGAAATCAAC+TGG 0.445321 5_3:-3297421 None:intergenic
TTGGGAATGGGATTTGTTGT+TGG 0.446359 5_3:+3296730 Msa0792180:CDS
TGATGATGGATGATCTCAAT+AGG 0.454191 5_3:+3297094 Msa0792180:CDS
GCAAAATGAAATATTGGGAA+TGG 0.458597 5_3:+3296717 Msa0792180:CDS
GGAGGTGTTGTTACTACTGT+TGG 0.465590 5_3:-3297295 None:intergenic
CTACCTTCGCCGTAAGGTCG+AGG 0.466198 5_3:+3295112 Msa0792180:CDS
GCATTATATAGTAGGTAGTA+GGG 0.467242 5_3:-3297375 None:intergenic
CAAAATGAAATATTGGGAAT+GGG 0.469377 5_3:+3296718 Msa0792180:CDS
GAGCATGACGTGGTTATGCC+AGG 0.470442 5_3:+3295050 Msa0792180:CDS
TCTCTGACCGACTGTGGGAC+TGG 0.472209 5_3:+3297244 Msa0792180:CDS
TGATTATGATCCTCAGGGAT+TGG 0.472665 5_3:-3297270 None:intergenic
ATACTCATTCATAATCCAAC+TGG 0.474720 5_3:-3295752 None:intergenic
TTATTGAAATCATGGGATAC+AGG 0.479933 5_3:-3297482 None:intergenic
CATTCATAATCCAACTGGTT+CGG 0.480582 5_3:-3295747 None:intergenic
TCTTTATCGCTATGACCCTT+GGG 0.483331 5_3:+3295172 Msa0792180:CDS
TTCAGTTATCAACTTTATGT+AGG 0.484690 5_3:+3297430 Msa0792180:three_prime_UTR
AGGAGGAGTATTGCTGTACT+TGG 0.484755 5_3:-3296851 None:intergenic
CAAGCTCTTCTTCAGTTGGA+TGG 0.486659 5_3:-3295082 None:intergenic
AGTAATTAGTGATTACTTGA+AGG 0.490931 5_3:-3297316 None:intergenic
ATCATGTCACAACCACTCTT+GGG 0.491534 5_3:+3296824 Msa0792180:CDS
GGCGCTGCCGCCACCACAAG+CGG 0.493139 5_3:-3297004 None:intergenic
AGAGTTCTACCTTCGCCGTA+AGG 0.493247 5_3:+3295106 Msa0792180:CDS
GATTTGGATGATTGAGATGT+GGG 0.497103 5_3:-3297161 None:intergenic
TTCCCTCGACCTTACGGCGA+AGG 0.497938 5_3:-3295115 None:intergenic
CTGCCGCTGAAGCTGAGACT+GGG 0.499254 5_3:-3297032 None:intergenic
GGAAATTGATTTGGTAACAT+TGG 0.503521 5_3:-3297213 None:intergenic
TATCGTTCGGTTTCATGTTG+GGG 0.505358 5_3:-3295781 None:intergenic
TTAGTCTCCGCTTGTGGTGG+CGG 0.506486 5_3:+3296997 Msa0792180:CDS
TCTACAAGCTCTTCTTCAGT+TGG 0.506937 5_3:-3295086 None:intergenic
AGTTAGTTAGAGAGAGTGGA+TGG 0.509005 5_3:+3294869 Msa0792180:exon
TGAAACCGAACGATATCAAA+AGG 0.509230 5_3:+3295789 Msa0792180:CDS
ATCCATCATCATTGCAGCAC+TGG 0.512112 5_3:-3297082 None:intergenic
TTTGGCAGCAATCGGAGAGA+AGG 0.516877 5_3:+3295543 Msa0792180:CDS
GGAAAGCAACAGGAGCAGAT+AGG 0.517048 5_3:+3295644 Msa0792180:CDS
AGCAATGTAGACAAATGATT+GGG 0.519527 5_3:-3297183 None:intergenic
TGAGCAGCTTTGGCAGCAAT+CGG 0.520334 5_3:+3295535 Msa0792180:intron
GGGTGAGATATCCCTATGTC+GGG 0.523444 5_3:+3296579 Msa0792180:intron
TACCGTTCAGAAGATGAAGA+AGG 0.528026 5_3:+3296883 Msa0792180:CDS
CCTCCTTCTCTGACCGACTG+TGG 0.530397 5_3:+3297238 Msa0792180:CDS
CCACAGTCGGTCAGAGAAGG+AGG 0.546229 5_3:-3297238 None:intergenic
TGGGAGACAACGAGGGAGGG+AGG 0.546963 5_3:-3296632 None:intergenic
GCATATTGTACTAGTTGCCT+AGG 0.547334 5_3:-3296955 None:intergenic
TGGATGGCAATAGCAGCAGC+AGG 0.551609 5_3:+3294885 Msa0792180:exon
GTCCCACAGTCGGTCAGAGA+AGG 0.552251 5_3:-3297241 None:intergenic
TACCTTCGCCGTAAGGTCGA+GGG 0.555355 5_3:+3295113 Msa0792180:CDS
ATATATGTTATTGAAATCAT+GGG 0.557506 5_3:-3297489 None:intergenic
GGGAGACAACGAGGGAGGGA+GGG 0.560158 5_3:-3296631 None:intergenic
AGTCGGTCAGAGAAGGAGGT+TGG 0.561135 5_3:-3297234 None:intergenic
TACCAGTGCTGCAATGATGA+TGG 0.562350 5_3:+3297080 Msa0792180:CDS
CTCCTTCTCTGACCGACTGT+GGG 0.564074 5_3:+3297239 Msa0792180:CDS
CTAGTACAATATGCAGCTGC+GGG 0.565924 5_3:+3296964 Msa0792180:CDS
ATCCTTCTTCATCTTCTGAA+CGG 0.566170 5_3:-3296885 None:intergenic
TGGGGTGATTATGATCCTCA+GGG 0.566445 5_3:-3297275 None:intergenic
CACATAGTTAACAAAATGGA+AGG 0.567229 5_3:+3296778 Msa0792180:CDS
GAACGGTAATTAGTAGGAGG+AGG 0.572179 5_3:-3296868 None:intergenic
AGGGTGAGATATCCCTATGT+CGG 0.573960 5_3:+3296578 Msa0792180:intron
TATATACCAGGAAGTTCCCA+AGG 0.575847 5_3:-3295188 None:intergenic
GGATTTGGATGATTGAGATG+TGG 0.580035 5_3:-3297162 None:intergenic
AATTAGTGATTACTTGAAGG+AGG 0.582479 5_3:-3297313 None:intergenic
ATGAGCTTGAGTCACGAAGA+TGG 0.587554 5_3:+3294942 Msa0792180:CDS
CTGTTAGTCTCCGCTTGTGG+TGG 0.588546 5_3:+3296994 Msa0792180:CDS
TCTCTTGTATACCCGACATA+GGG 0.588580 5_3:-3296590 None:intergenic
CTCTCTTGTATACCCGACAT+AGG 0.590093 5_3:-3296591 None:intergenic
CCAAAGGCATCCGAACCAGT+TGG 0.592737 5_3:+3295737 Msa0792180:CDS
CGAGATAGAAAGTATCGAAA+CGG 0.593685 5_3:+3295586 Msa0792180:CDS
AGCATGACGTGGTTATGCCA+GGG 0.596795 5_3:+3295051 Msa0792180:CDS
TATAAAAGAGGAGAGAAAAG+GGG 0.597062 5_3:+3294837 None:intergenic
TGTCGGGTATACAAGAGAGC+AGG 0.602519 5_3:+3296595 Msa0792180:CDS
AATTGGGAGACAACGAGGGA+GGG 0.605068 5_3:-3296635 None:intergenic
TTTCGATACTTTCTATCTCG+AGG 0.612931 5_3:-3295583 None:intergenic
CGACCATCATCATCATCAAG+AGG 0.614625 5_3:+3296661 Msa0792180:CDS
TCTAACGATAATAGTAACAA+AGG 0.615780 5_3:+3294978 Msa0792180:CDS
TCTCTGTTAGTCTCCGCTTG+TGG 0.618457 5_3:+3296991 Msa0792180:CDS
TTTCCCAGTCTCAGCTTCAG+CGG 0.622682 5_3:+3297029 Msa0792180:CDS
TCTGAACGGTAATTAGTAGG+AGG 0.623921 5_3:-3296871 None:intergenic
ACTAGTACAATATGCAGCTG+CGG 0.627166 5_3:+3296963 Msa0792180:CDS
GTACCTCTTGATGATGATGA+TGG 0.633918 5_3:-3296664 None:intergenic
AGGTGTTGTTACTACTGTTG+GGG 0.635388 5_3:-3297293 None:intergenic
CAGCAATCGGAGAGAAGGAG+TGG 0.646393 5_3:+3295548 Msa0792180:CDS
AGCAGCAGCAACATCAACCT+AGG 0.647554 5_3:+3296938 Msa0792180:CDS
TATTCTGGAAAAGCTCCCAA+AGG 0.650827 5_3:+3295721 Msa0792180:CDS
AAAATGGAAGGAAGCAGTAG+CGG 0.650928 5_3:+3296790 Msa0792180:CDS
ATGGCAATAGCAGCAGCAGG+AGG 0.651608 5_3:+3294888 Msa0792180:CDS
GTTGGATGGAAACGAAACCC+TGG 0.652572 5_3:-3295068 None:intergenic
TAATTGGGAGACAACGAGGG+AGG 0.654012 5_3:-3296636 None:intergenic
CGTGTAATTGGGAGACAACG+AGG 0.654137 5_3:-3296640 None:intergenic
TTGGATTCCAGTCCCACAGT+CGG 0.664258 5_3:-3297251 None:intergenic
ATGGAAGGAAGCAGTAGCGG+CGG 0.686399 5_3:+3296793 Msa0792180:CDS
GTACTTGGAAAGCCCAAGAG+TGG 0.699274 5_3:-3296836 None:intergenic
GTGTAATTGGGAGACAACGA+GGG 0.701719 5_3:-3296639 None:intergenic
ATATACCAGGAAGTTCCCAA+GGG 0.721658 5_3:-3295187 None:intergenic
TGATGATCACGAGCATGACG+TGG 0.732266 5_3:+3295040 Msa0792180:CDS
GGACTGGAATCCAATCCCTG+AGG 0.753349 5_3:+3297260 Msa0792180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAATAAATATATACC+AGG - chr5_3:3295203-3295222 None:intergenic 10.0%
!! TTATATTATTAAATCAAAGA+GGG - chr5_3:3295334-3295353 None:intergenic 10.0%
!! ATTATATTATTAAATCAAAG+AGG - chr5_3:3295335-3295354 None:intergenic 10.0%
!!! TTTTTGATAAATAAATATCT+TGG + chr5_3:3295364-3295383 Msa0792180:intron 10.0%
!! ATATATATATATATGCTATA+TGG - chr5_3:3296159-3296178 None:intergenic 10.0%
!!! GTTGTATATGAATATATTTT+AGG - chr5_3:3296282-3296301 None:intergenic 15.0%
!! TCAAATTCAAAATTATTGTA+AGG - chr5_3:3296543-3296562 None:intergenic 15.0%
!! TTTGAATTTGAATTTGAATT+AGG + chr5_3:3296552-3296571 Msa0792180:intron 15.0%
!! TTGAATTTGAATTTGAATTA+GGG + chr5_3:3296559-3296578 Msa0792180:intron 15.0%
!! ATATATGTTATTGAAATCAT+GGG - chr5_3:3297492-3297511 None:intergenic 15.0%
!! TATATATGTTATTGAAATCA+TGG - chr5_3:3297493-3297512 None:intergenic 15.0%
!! AATATGAAGCAAATAAGAAA+GGG - chr5_3:3295392-3295411 None:intergenic 20.0%
!! AAATATGAAGCAAATAAGAA+AGG - chr5_3:3295393-3295412 None:intergenic 20.0%
!!! AATATAGCTCTTTAAAACTA+GGG - chr5_3:3295984-3296003 None:intergenic 20.0%
!!! TAATATAGCTCTTTAAAACT+AGG - chr5_3:3295985-3296004 None:intergenic 20.0%
!!! TATATTATGCATCTTGATTT+TGG + chr5_3:3296005-3296024 Msa0792180:intron 20.0%
!!! ATATTATGCATCTTGATTTT+GGG + chr5_3:3296006-3296025 Msa0792180:intron 20.0%
!! GTGTGTATACTATATATTTA+TGG - chr5_3:3296048-3296067 None:intergenic 20.0%
!!! GAAAGGAATTAATTAATTTG+TGG - chr5_3:3296393-3296412 None:intergenic 20.0%
!! ATGTATTTGCATTATATAGT+AGG - chr5_3:3297386-3297405 None:intergenic 20.0%
! TCTAACGATAATAGTAACAA+AGG + chr5_3:3294978-3294997 Msa0792180:CDS 25.0%
! TTATTAAATCAAAGAGGGAT+GGG - chr5_3:3295329-3295348 None:intergenic 25.0%
! ATTATTAAATCAAAGAGGGA+TGG - chr5_3:3295330-3295349 None:intergenic 25.0%
!!! TATGTGATTGAATTTTGATG+TGG + chr5_3:3295484-3295503 Msa0792180:intron 25.0%
!! TTTTCCAGAATAGAAAACTA+GGG - chr5_3:3295713-3295732 None:intergenic 25.0%
!! ATATACCTTTTGATATCGTT+CGG - chr5_3:3295797-3295816 None:intergenic 25.0%
!!! CATTACTGATTTTTCTTTCA+TGG + chr5_3:3295904-3295923 Msa0792180:intron 25.0%
!!! TTTTAAAACCAAGAAAGACA+CGG - chr5_3:3295954-3295973 None:intergenic 25.0%
! ATATATATATGCTATATGGC+TGG - chr5_3:3296155-3296174 None:intergenic 25.0%
!! ATGAAATGTATGCCAAATTT+TGG + chr5_3:3296515-3296534 Msa0792180:intron 25.0%
! TATTGTAAGGATCCAAAATT+TGG - chr5_3:3296530-3296549 None:intergenic 25.0%
! TAAGCAGCAAAATGAAATAT+TGG + chr5_3:3296711-3296730 Msa0792180:CDS 25.0%
! AAGCAGCAAAATGAAATATT+GGG + chr5_3:3296712-3296731 Msa0792180:CDS 25.0%
! CAAAATGAAATATTGGGAAT+GGG + chr5_3:3296718-3296737 Msa0792180:CDS 25.0%
! TGATCACATAGTTAACAAAA+TGG + chr5_3:3296774-3296793 Msa0792180:CDS 25.0%
! AGTAATTAGTGATTACTTGA+AGG - chr5_3:3297319-3297338 None:intergenic 25.0%
! TTCAGTTATCAACTTTATGT+AGG + chr5_3:3297430-3297449 Msa0792180:three_prime_UTR 25.0%
! TTCTAATTGCTCTGATTATT+CGG + chr5_3:3297459-3297478 Msa0792180:three_prime_UTR 25.0%
ACTGAAAACTTTCGTTCAAT+TGG + chr5_3:3295676-3295695 Msa0792180:CDS 30.0%
!! AAAACCCTAGTTTTCTATTC+TGG + chr5_3:3295706-3295725 Msa0792180:CDS 30.0%
! CTTTTCCAGAATAGAAAACT+AGG - chr5_3:3295714-3295733 None:intergenic 30.0%
ATACTCATTCATAATCCAAC+TGG - chr5_3:3295755-3295774 None:intergenic 30.0%
! GCAGTTCTATTTGGTAATTA+AGG - chr5_3:3295867-3295886 None:intergenic 30.0%
GCAAAATGAAATATTGGGAA+TGG + chr5_3:3296717-3296736 Msa0792180:CDS 30.0%
ATGTGATCATCAATTGTCTT+TGG - chr5_3:3296763-3296782 None:intergenic 30.0%
CACATAGTTAACAAAATGGA+AGG + chr5_3:3296778-3296797 Msa0792180:CDS 30.0%
AGCAATGTAGACAAATGATT+GGG - chr5_3:3297186-3297205 None:intergenic 30.0%
!! GGAAATTGATTTGGTAACAT+TGG - chr5_3:3297216-3297235 None:intergenic 30.0%
AATTAGTGATTACTTGAAGG+AGG - chr5_3:3297316-3297335 None:intergenic 30.0%
GCATTATATAGTAGGTAGTA+GGG - chr5_3:3297378-3297397 None:intergenic 30.0%
TGCATTATATAGTAGGTAGT+AGG - chr5_3:3297379-3297398 None:intergenic 30.0%
!! AGTTGATAACTGAAATCAAC+TGG - chr5_3:3297424-3297443 None:intergenic 30.0%
TTATTGAAATCATGGGATAC+AGG - chr5_3:3297485-3297504 None:intergenic 30.0%
TGTTAGTTAGTTAGAGAGAG+TGG + chr5_3:3294865-3294884 Msa0792180:five_prime_UTR 35.0%
!! TCCAGAATTGCTTTAGGAAA+GGG - chr5_3:3295290-3295309 None:intergenic 35.0%
!! TTCCAGAATTGCTTTAGGAA+AGG - chr5_3:3295291-3295310 None:intergenic 35.0%
AGGGATGGGAACAAAAAAAA+GGG - chr5_3:3295315-3295334 None:intergenic 35.0%
! TATATGATGATGAGCAGCTT+TGG + chr5_3:3295525-3295544 Msa0792180:intron 35.0%
TTTCGATACTTTCTATCTCG+AGG - chr5_3:3295586-3295605 None:intergenic 35.0%
!! CGAGATAGAAAGTATCGAAA+CGG + chr5_3:3295586-3295605 Msa0792180:CDS 35.0%
! GTGTAACAACTTCTGGTTAT+TGG + chr5_3:3295623-3295642 Msa0792180:CDS 35.0%
CATTCATAATCCAACTGGTT+CGG - chr5_3:3295750-3295769 None:intergenic 35.0%
ATATCGTTCGGTTTCATGTT+GGG - chr5_3:3295785-3295804 None:intergenic 35.0%
TGAAACCGAACGATATCAAA+AGG + chr5_3:3295789-3295808 Msa0792180:CDS 35.0%
TATTGAAACCGTGTCTTTCT+TGG + chr5_3:3295943-3295962 Msa0792180:intron 35.0%
! CTAGCTAGCTACTATTGTTT+TGG - chr5_3:3296112-3296131 None:intergenic 35.0%
TATATATGCTATATGGCTGG+TGG - chr5_3:3296152-3296171 None:intergenic 35.0%
GAGAGGGAATTAATCACAAA+CGG - chr5_3:3296313-3296332 None:intergenic 35.0%
AAATGATCACGAGAGATGAA+AGG - chr5_3:3296410-3296429 None:intergenic 35.0%
!! ATGATGATGGTCGTGTAATT+GGG - chr5_3:3296654-3296673 None:intergenic 35.0%
TCTTCTGAACGGTAATTAGT+AGG - chr5_3:3296877-3296896 None:intergenic 35.0%
ATCCTTCTTCATCTTCTGAA+CGG - chr5_3:3296888-3296907 None:intergenic 35.0%
!! TGATGATGGATGATCTCAAT+AGG + chr5_3:3297094-3297113 Msa0792180:CDS 35.0%
GATTTGGATGATTGAGATGT+GGG - chr5_3:3297164-3297183 None:intergenic 35.0%
GTAGACAAATGATTGGGATT+TGG - chr5_3:3297180-3297199 None:intergenic 35.0%
CAGCAATGTAGACAAATGAT+TGG - chr5_3:3297187-3297206 None:intergenic 35.0%
AAGGAGGTTGGAAATTGATT+TGG - chr5_3:3297225-3297244 None:intergenic 35.0%
AGTTAGTTAGAGAGAGTGGA+TGG + chr5_3:3294869-3294888 Msa0792180:exon 40.0%
TCTACAAGCTCTTCTTCAGT+TGG - chr5_3:3295089-3295108 None:intergenic 40.0%
ATCTTTATCGCTATGACCCT+TGG + chr5_3:3295171-3295190 Msa0792180:CDS 40.0%
TCTTTATCGCTATGACCCTT+GGG + chr5_3:3295172-3295191 Msa0792180:CDS 40.0%
ATATACCAGGAAGTTCCCAA+GGG - chr5_3:3295190-3295209 None:intergenic 40.0%
TATATACCAGGAAGTTCCCA+AGG - chr5_3:3295191-3295210 None:intergenic 40.0%
!! CCAGAATTGCTTTAGGAAAG+GGG - chr5_3:3295289-3295308 None:intergenic 40.0%
AGGGTTTCCAGAATTGCTTT+AGG - chr5_3:3295296-3295315 None:intergenic 40.0%
GAGGGATGGGAACAAAAAAA+AGG - chr5_3:3295316-3295335 None:intergenic 40.0%
CCAGAAGTTGTTACACGATT+AGG - chr5_3:3295619-3295638 None:intergenic 40.0%
CCTAATCGTGTAACAACTTC+TGG + chr5_3:3295616-3295635 Msa0792180:CDS 40.0%
TCTGGTTATTGGAAAGCAAC+AGG + chr5_3:3295634-3295653 Msa0792180:CDS 40.0%
! TATTCTGGAAAAGCTCCCAA+AGG + chr5_3:3295721-3295740 Msa0792180:CDS 40.0%
TATCGTTCGGTTTCATGTTG+GGG - chr5_3:3295784-3295803 None:intergenic 40.0%
GATATCGTTCGGTTTCATGT+TGG - chr5_3:3295786-3295805 None:intergenic 40.0%
CCATCAAGAGCAGTTCTATT+TGG - chr5_3:3295876-3295895 None:intergenic 40.0%
CCAAATAGAACTGCTCTTGA+TGG + chr5_3:3295873-3295892 Msa0792180:intron 40.0%
!! GTTTTGGTGTGCTATAGCTT+TGG - chr5_3:3296096-3296115 None:intergenic 40.0%
TTAGAAGCCAAGAATGCAAG+AGG + chr5_3:3296192-3296211 Msa0792180:intron 40.0%
TAGAAGCCAAGAATGCAAGA+GGG + chr5_3:3296193-3296212 Msa0792180:intron 40.0%
GTATGTATGAGAGAGAGAGA+GGG - chr5_3:3296329-3296348 None:intergenic 40.0%
TGTATGTATGAGAGAGAGAG+AGG - chr5_3:3296330-3296349 None:intergenic 40.0%
!! TCATTTTGATAGTCCAGTGC+AGG + chr5_3:3296424-3296443 Msa0792180:intron 40.0%
TCTCTTGTATACCCGACATA+GGG - chr5_3:3296593-3296612 None:intergenic 40.0%
!! GATGATGATGGTCGTGTAAT+TGG - chr5_3:3296655-3296674 None:intergenic 40.0%
!! GTACCTCTTGATGATGATGA+TGG - chr5_3:3296667-3296686 None:intergenic 40.0%
!! TTGGGAATGGGATTTGTTGT+TGG + chr5_3:3296730-3296749 Msa0792180:CDS 40.0%
AAAATGGAAGGAAGCAGTAG+CGG + chr5_3:3296790-3296809 Msa0792180:CDS 40.0%
ATCATGTCACAACCACTCTT+GGG + chr5_3:3296824-3296843 Msa0792180:CDS 40.0%
TCTGAACGGTAATTAGTAGG+AGG - chr5_3:3296874-3296893 None:intergenic 40.0%
TACCGTTCAGAAGATGAAGA+AGG + chr5_3:3296883-3296902 Msa0792180:CDS 40.0%
GCATATTGTACTAGTTGCCT+AGG - chr5_3:3296958-3296977 None:intergenic 40.0%
ACTAGTACAATATGCAGCTG+CGG + chr5_3:3296963-3296982 Msa0792180:CDS 40.0%
GGATTTGGATGATTGAGATG+TGG - chr5_3:3297165-3297184 None:intergenic 40.0%
TGATTATGATCCTCAGGGAT+TGG - chr5_3:3297273-3297292 None:intergenic 40.0%
!! AGGTGTTGTTACTACTGTTG+GGG - chr5_3:3297296-3297315 None:intergenic 40.0%
!! GAGGTGTTGTTACTACTGTT+GGG - chr5_3:3297297-3297316 None:intergenic 40.0%
AAGCTCATGCTGCTCATGTT+AGG - chr5_3:3294930-3294949 None:intergenic 45.0%
ATGAGCTTGAGTCACGAAGA+TGG + chr5_3:3294942-3294961 Msa0792180:CDS 45.0%
CAAGCTCTTCTTCAGTTGGA+TGG - chr5_3:3295085-3295104 None:intergenic 45.0%
! AACGTTTTCCCTCGACCTTA+CGG - chr5_3:3295124-3295143 None:intergenic 45.0%
CCCCTTTCCTAAAGCAATTC+TGG + chr5_3:3295286-3295305 Msa0792180:intron 45.0%
AGGGTGAGATATCCCTATGT+CGG + chr5_3:3296578-3296597 Msa0792180:intron 45.0%
CTCTCTTGTATACCCGACAT+AGG - chr5_3:3296594-3296613 None:intergenic 45.0%
GTGTAATTGGGAGACAACGA+GGG - chr5_3:3296642-3296661 None:intergenic 45.0%
CGACCATCATCATCATCAAG+AGG + chr5_3:3296661-3296680 Msa0792180:CDS 45.0%
GATCATGTCACAACCACTCT+TGG + chr5_3:3296823-3296842 Msa0792180:CDS 45.0%
!! AGGAGGAGTATTGCTGTACT+TGG - chr5_3:3296854-3296873 None:intergenic 45.0%
GAACGGTAATTAGTAGGAGG+AGG - chr5_3:3296871-3296890 None:intergenic 45.0%
CTAGTACAATATGCAGCTGC+GGG + chr5_3:3296964-3296983 Msa0792180:CDS 45.0%
TGAAGCTGAGACTGGGAAAA+TGG - chr5_3:3297028-3297047 None:intergenic 45.0%
TACCAGTGCTGCAATGATGA+TGG + chr5_3:3297080-3297099 Msa0792180:CDS 45.0%
ATCCATCATCATTGCAGCAC+TGG - chr5_3:3297085-3297104 None:intergenic 45.0%
TGGGGTGATTATGATCCTCA+GGG - chr5_3:3297278-3297297 None:intergenic 45.0%
TTGGGGTGATTATGATCCTC+AGG - chr5_3:3297279-3297298 None:intergenic 45.0%
!! GGAGGTGTTGTTACTACTGT+TGG - chr5_3:3297298-3297317 None:intergenic 45.0%
TGATGATCACGAGCATGACG+TGG + chr5_3:3295040-3295059 Msa0792180:CDS 50.0%
AGCATGACGTGGTTATGCCA+GGG + chr5_3:3295051-3295070 Msa0792180:CDS 50.0%
GTTGGATGGAAACGAAACCC+TGG - chr5_3:3295071-3295090 None:intergenic 50.0%
AGAGTTCTACCTTCGCCGTA+AGG + chr5_3:3295106-3295125 Msa0792180:CDS 50.0%
TATGACCCTTGGGAACTTCC+TGG + chr5_3:3295182-3295201 Msa0792180:CDS 50.0%
! TGAGCAGCTTTGGCAGCAAT+CGG + chr5_3:3295535-3295554 Msa0792180:intron 50.0%
TTTGGCAGCAATCGGAGAGA+AGG + chr5_3:3295543-3295562 Msa0792180:CDS 50.0%
GGAAAGCAACAGGAGCAGAT+AGG + chr5_3:3295644-3295663 Msa0792180:CDS 50.0%
!! CAACTGGTTCGGATGCCTTT+GGG - chr5_3:3295739-3295758 None:intergenic 50.0%
AGCTAGCTGCGTGAAACTTG+CGG + chr5_3:3296126-3296145 Msa0792180:intron 50.0%
CTCTCTCCCTCTTGCATTCT+TGG - chr5_3:3296202-3296221 None:intergenic 50.0%
GTACAGTAGTCTACCTGCAC+TGG - chr5_3:3296440-3296459 None:intergenic 50.0%
GGGTGAGATATCCCTATGTC+GGG + chr5_3:3296579-3296598 Msa0792180:intron 50.0%
TGTCGGGTATACAAGAGAGC+AGG + chr5_3:3296595-3296614 Msa0792180:CDS 50.0%
AATTGGGAGACAACGAGGGA+GGG - chr5_3:3296638-3296657 None:intergenic 50.0%
TAATTGGGAGACAACGAGGG+AGG - chr5_3:3296639-3296658 None:intergenic 50.0%
CGTGTAATTGGGAGACAACG+AGG - chr5_3:3296643-3296662 None:intergenic 50.0%
GTACTTGGAAAGCCCAAGAG+TGG - chr5_3:3296839-3296858 None:intergenic 50.0%
AGCAGCAGCAACATCAACCT+AGG + chr5_3:3296938-3296957 Msa0792180:CDS 50.0%
! TCTCTGTTAGTCTCCGCTTG+TGG + chr5_3:3296991-3297010 Msa0792180:CDS 50.0%
TTTCCCAGTCTCAGCTTCAG+CGG + chr5_3:3297029-3297048 Msa0792180:CDS 50.0%
!! TGCAGCACTGGTAGCAGTAT+TGG - chr5_3:3297073-3297092 None:intergenic 50.0%
TTGGATTCCAGTCCCACAGT+CGG - chr5_3:3297254-3297273 None:intergenic 50.0%
TGGATGGCAATAGCAGCAGC+AGG + chr5_3:3294885-3294904 Msa0792180:exon 55.0%
ATGGCAATAGCAGCAGCAGG+AGG + chr5_3:3294888-3294907 Msa0792180:CDS 55.0%
GAGCATGACGTGGTTATGCC+AGG + chr5_3:3295050-3295069 Msa0792180:CDS 55.0%
TACCTTCGCCGTAAGGTCGA+GGG + chr5_3:3295113-3295132 Msa0792180:CDS 55.0%
CAGCAATCGGAGAGAAGGAG+TGG + chr5_3:3295548-3295567 Msa0792180:CDS 55.0%
!! CCAACTGGTTCGGATGCCTT+TGG - chr5_3:3295740-3295759 None:intergenic 55.0%
!! CCAAAGGCATCCGAACCAGT+TGG + chr5_3:3295737-3295756 Msa0792180:CDS 55.0%
ATGGAAGGAAGCAGTAGCGG+CGG + chr5_3:3296793-3296812 Msa0792180:CDS 55.0%
! CTGTTAGTCTCCGCTTGTGG+TGG + chr5_3:3296994-3297013 Msa0792180:CDS 55.0%
TTAGTCTCCGCTTGTGGTGG+CGG + chr5_3:3296997-3297016 Msa0792180:CDS 55.0%
AGTCGGTCAGAGAAGGAGGT+TGG - chr5_3:3297237-3297256 None:intergenic 55.0%
CTCCTTCTCTGACCGACTGT+GGG + chr5_3:3297239-3297258 Msa0792180:CDS 55.0%
GGACTGGAATCCAATCCCTG+AGG + chr5_3:3297260-3297279 Msa0792180:CDS 55.0%
CTACCTTCGCCGTAAGGTCG+AGG + chr5_3:3295112-3295131 Msa0792180:CDS 60.0%
TTCCCTCGACCTTACGGCGA+AGG - chr5_3:3295118-3295137 None:intergenic 60.0%
CTGCCGCTGAAGCTGAGACT+GGG - chr5_3:3297035-3297054 None:intergenic 60.0%
CCACAGTCGGTCAGAGAAGG+AGG - chr5_3:3297241-3297260 None:intergenic 60.0%
CCTCCTTCTCTGACCGACTG+TGG + chr5_3:3297238-3297257 Msa0792180:CDS 60.0%
GTCCCACAGTCGGTCAGAGA+AGG - chr5_3:3297244-3297263 None:intergenic 60.0%
TCTCTGACCGACTGTGGGAC+TGG + chr5_3:3297244-3297263 Msa0792180:CDS 60.0%
GGGAGACAACGAGGGAGGGA+GGG - chr5_3:3296634-3296653 None:intergenic 65.0%
TGGGAGACAACGAGGGAGGG+AGG - chr5_3:3296635-3296654 None:intergenic 65.0%
GCTGCCGCTGAAGCTGAGAC+TGG - chr5_3:3297036-3297055 None:intergenic 65.0%
GGCGCTGCCGCCACCACAAG+CGG - chr5_3:3297007-3297026 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 3294851 3297566 3294851 ID=Msa0792180;Name=Msa0792180
chr5_3 mRNA 3294851 3297566 3294851 ID=Msa0792180-mRNA-1;Parent=Msa0792180;Name=Msa0792180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=37|1|1|1|1|1|3|240|443
chr5_3 exon 3294851 3295203 3294851 ID=Msa0792180-mRNA-1:exon:1456;Parent=Msa0792180-mRNA-1
chr5_3 exon 3295542 3295810 3295542 ID=Msa0792180-mRNA-1:exon:1457;Parent=Msa0792180-mRNA-1
chr5_3 exon 3296580 3297566 3296580 ID=Msa0792180-mRNA-1:exon:1458;Parent=Msa0792180-mRNA-1
chr5_3 five_prime_UTR 3294851 3294887 3294851 ID=Msa0792180-mRNA-1:five_prime_utr;Parent=Msa0792180-mRNA-1
chr5_3 CDS 3294888 3295203 3294888 ID=Msa0792180-mRNA-1:cds;Parent=Msa0792180-mRNA-1
chr5_3 CDS 3295542 3295810 3295542 ID=Msa0792180-mRNA-1:cds;Parent=Msa0792180-mRNA-1
chr5_3 CDS 3296580 3297326 3296580 ID=Msa0792180-mRNA-1:cds;Parent=Msa0792180-mRNA-1
chr5_3 three_prime_UTR 3297327 3297566 3297327 ID=Msa0792180-mRNA-1:three_prime_utr;Parent=Msa0792180-mRNA-1
Gene Sequence

>Msa0792180

ATGGCAATAGCAGCAGCAGGAGGAGCAGCAACATCATCACCTAACATGAGCAGCATGAGCTTGAGTCACGAAGATGGAACTGCTACTACTTCTAACGATAATAGTAACAAAGGAGCTACAGCTACAGTTACAGTAGTAGATGATGATGATGATGATGATCACGAGCATGACGTGGTTATGCCAGGGTTTCGTTTCCATCCAACTGAAGAAGAGCTTGTAGAGTTCTACCTTCGCCGTAAGGTCGAGGGAAAACGTTTCAACGTTGAGCTTATTACTTTTCTCGATCTTTATCGCTATGACCCTTGGGAACTTCCTGCTTTGGCAGCAATCGGAGAGAAGGAGTGGTACTTTTATGTGCCTCGAGATAGAAAGTATCGAAACGGTGATCGTCCTAATCGTGTAACAACTTCTGGTTATTGGAAAGCAACAGGAGCAGATAGGATGATTCGAACTGAAAACTTTCGTTCAATTGGACTCAAGAAAACCCTAGTTTTCTATTCTGGAAAAGCTCCCAAAGGCATCCGAACCAGTTGGATTATGAATGAGTATAGATTACCCCAACATGAAACCGAACGATATCAAAAGGGTGAGATATCCCTATGTCGGGTATACAAGAGAGCAGGAGTAGAAGATCATCCCTCCCTCCCTCGTTGTCTCCCAATTACACGACCATCATCATCATCAAGAGGTACTACTGCTTCACATTCAGACAAGAATAAGCAGCAAAATGAAATATTGGGAATGGGATTTGTTGTTGGACAATCACCAAAGACAATTGATGATCACATAGTTAACAAAATGGAAGGAAGCAGTAGCGGCGGTAATTCAGATCATGTCACAACCACTCTTGGGCTTTCCAAGTACAGCAATACTCCTCCTCCTACTAATTACCGTTCAGAAGATGAAGAAGGATTGATGATGATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACATCAACCTAGGCAACTAGTACAATATGCAGCTGCGGGAAACTCTCTGTTAGTCTCCGCTTGTGGTGGCGGCAGCGCCATTTTCCCAGTCTCAGCTTCAGCGGCAGCAGCAGTGAGCTGTTCCAATACTGCTACCAGTGCTGCAATGATGATGGATGATCTCAATAGGCTTGTAAGTTATCAACAACAGCAATATTGTTACAATGTTCAAAACCCACATCTCAATCATCCAAATCCCAATCATTTGTCTACATTGCTGATGCAACCAATGTTACCAAATCAATTTCCAACCTCCTTCTCTGACCGACTGTGGGACTGGAATCCAATCCCTGAGGATCATAATCACCCCAACAGTAGTAACAACACCTCCTTCAAGTAA
Protein sequence

>Msa0792180

MAIAAAGGAATSSPNMSSMSLSHEDGTATTSNDNSNKGATATVTVVDDDDDDDHEHDVVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKGEISLCRVYKRAGVEDHPSLPRCLPITRPSSSSRGTTASHSDKNKQQNEILGMGFVVGQSPKTIDDHIVNKMEGSSSGGNSDHVTTTLGLSKYSNTPPPTNYRSEDEEGLMMMQQQQQQQQQQHQPRQLVQYAAAGNSLLVSACGGGSAIFPVSASAAAAVSCSNTATSAAMMMDDLNRLVSYQQQQYCYNVQNPHLNHPNPNHLSTLLMQPMLPNQFPTSFSDRLWDWNPIPEDHNHPNSSNNTSFK*