AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0167150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167150 MtrunA17_Chr1g0182941 95.495 333 14 1 1 332 1 333 0.0 627
Msa0167150 MtrunA17_Chr7g0269121 33.588 262 153 3 84 324 183 444 1.22e-40 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167150 AT4G28740.1 64.706 306 96 6 29 332 52 347 5.92e-136 390
Msa0167150 AT1G02910.1 31.679 262 158 2 84 324 190 451 8.41e-30 118
Msa0167150 AT1G02910.2 35.616 146 94 0 84 229 190 335 4.10e-16 79.0

Find 107 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAGCCTCTTGTGCATTCT+TGG 0.158034 1_4:-48952719 None:intergenic
AATCTAATTCTTCTCAAATT+AGG 0.208211 1_4:+48951540 Msa0167150:CDS
TCTCCTTAGTTGGATGATTA+TGG 0.247045 1_4:-48951219 None:intergenic
AGAAGAATTAGATTGTTTAT+TGG 0.275303 1_4:-48951531 None:intergenic
GGATGGAAATTTGCCTGCTT+TGG 0.289463 1_4:+48952942 Msa0167150:CDS
TGAGGTTCTATCTCCCTTTC+GGG 0.303519 1_4:+48952504 Msa0167150:CDS
ATAGCAATCTCACAACTAAT+TGG 0.308590 1_4:+48952583 Msa0167150:CDS
CTGCCATAGTCTCTTCCTTC+TGG 0.310842 1_4:-48953007 None:intergenic
AGGGCTGAACTCCTTGTATA+AGG 0.311953 1_4:-48953687 None:intergenic
GTGAGGTTCTATCTCCCTTT+CGG 0.318617 1_4:+48952503 Msa0167150:CDS
TAAAATCATATATTTAGTTT+AGG 0.319874 1_4:+48953811 Msa0167150:three_prime_UTR
ACCTTTCACAGAAAGTCTTT+TGG 0.320758 1_4:+48952888 Msa0167150:CDS
TGAGGAACTGAACATAAAAT+TGG 0.327285 1_4:-48951429 None:intergenic
GCCGAGACCCTTGAGAATTT+CGG 0.328655 1_4:-48952641 None:intergenic
AGTTTCACTTTCTTTGCATA+TGG 0.343844 1_4:+48951275 Msa0167150:five_prime_UTR
GACCATTCGGAGGTGATAAC+TGG 0.352390 1_4:-48953036 None:intergenic
ACCATGACATTAACAACGTT+TGG 0.352424 1_4:+48951329 Msa0167150:exon
GAGATGATCCTTCAAGAGTA+TGG 0.355797 1_4:-48953645 None:intergenic
CTTTGTTGTCTCTAAAGTAT+AGG 0.356891 1_4:-48952696 None:intergenic
ATTGGAGCAGTATCTTTGTT+TGG 0.363564 1_4:+48952670 Msa0167150:CDS
TATCTCCCTTTCGGGCAGTT+AGG 0.390845 1_4:+48952512 Msa0167150:CDS
AAATTTCCATCCGTTACTAA+TGG 0.393889 1_4:-48952931 None:intergenic
CCAGTCCAGATTCCCTTTAC+CGG 0.394427 1_4:-48953581 None:intergenic
TGCACAATTACCGCCGGTAA+AGG 0.394914 1_4:+48953568 Msa0167150:CDS
GGGCTGAACTCCTTGTATAA+GGG 0.395682 1_4:-48953686 None:intergenic
CGCTTGGATGGTCGAGTTCG+TGG 0.397559 1_4:+48953509 Msa0167150:CDS
TACCGCCGGTAAAGGGAATC+TGG 0.408305 1_4:+48953576 Msa0167150:CDS
CACATATCTATCTCCTTAGT+TGG 0.419447 1_4:-48951229 None:intergenic
CCACCAGAAGGAAGAGACTA+TGG 0.419742 1_4:+48953004 Msa0167150:CDS
TTTGTTGCAAGTGCTTCTCT+CGG 0.428816 1_4:+48952553 Msa0167150:CDS
GCACAATTACCGCCGGTAAA+GGG 0.429086 1_4:+48953569 Msa0167150:CDS
ATGAAACATGGAGGTGGTGT+TGG 0.435397 1_4:-48951392 None:intergenic
AACTACTGAAACATTCACTT+TGG 0.441246 1_4:+48951300 Msa0167150:five_prime_UTR
TAGTGGGAACAGAAGATCTT+TGG 0.442205 1_4:-48951493 None:intergenic
GACTCGGTTATGAAGGATGC+TGG 0.449765 1_4:-48952850 None:intergenic
ATCTGGACTGGCCTACTAGA+TGG 0.452164 1_4:+48953593 Msa0167150:CDS
TCCGAAATTCTCAAGGGTCT+CGG 0.462525 1_4:+48952640 Msa0167150:CDS
TGAAACATGGAGGTGGTGTT+GGG 0.464979 1_4:-48951391 None:intergenic
GGAAGCAGAACAAACAATAG+TGG 0.475113 1_4:-48951510 None:intergenic
TCAGCTCTACAGCCAGGATA+AGG 0.479607 1_4:+48952479 Msa0167150:intron
TCCAAAAGACTTTCTGTGAA+AGG 0.484014 1_4:-48952889 None:intergenic
AGGTGTATCCTCTGAGTCTC+CGG 0.484946 1_4:+48953174 Msa0167150:CDS
CTTAAAAGACTCGGTTATGA+AGG 0.489119 1_4:-48952857 None:intergenic
TTGTTGCAAGTGCTTCTCTC+GGG 0.495810 1_4:+48952554 Msa0167150:CDS
ACGTTGTTAATGTCATGGTT+TGG 0.496411 1_4:-48951325 None:intergenic
TTTGATAGAATATGCACTGT+AGG 0.498471 1_4:-48953707 None:intergenic
TTTGATAGAATATGCACTGT+AGG 0.500953 1_4:-48953769 None:intergenic
TGTTCTTCAGCTCTACAGCC+AGG 0.501870 1_4:+48952473 Msa0167150:intron
GGTTATGAAGGATGCTGGGC+CGG 0.510643 1_4:-48952845 None:intergenic
ACCAAACGTTGTTAATGTCA+TGG 0.511914 1_4:-48951330 None:intergenic
CGAGTTCGTGGAAGTGGTGT+TGG 0.518858 1_4:+48953521 Msa0167150:CDS
GAGAATTTCGGAAACTTCTG+AGG 0.522492 1_4:-48952629 None:intergenic
TAGGTATCTATCTCTACGCT+TGG 0.524939 1_4:+48953493 Msa0167150:intron
ATACCATAATCATCCAACTA+AGG 0.525161 1_4:+48951216 Msa0167150:five_prime_UTR
TCAGTCTCAAATTCCAAAGC+AGG 0.526917 1_4:-48952955 None:intergenic
TAGAACCTCACTCCTTATCC+TGG 0.528279 1_4:-48952491 None:intergenic
GGAGATAGATATGTGACCTC+AGG 0.530510 1_4:+48951237 Msa0167150:five_prime_UTR
AAGGGTCTCGGCATTGACAT+TGG 0.530691 1_4:+48952652 Msa0167150:CDS
GTTGTTCCATTAGTAACGGA+TGG 0.533720 1_4:+48952925 Msa0167150:CDS
GAACATCCTAACTGCCCGAA+AGG 0.535459 1_4:-48952518 None:intergenic
GGCCTACTAGATGGCATGGA+TGG 0.537031 1_4:+48953602 Msa0167150:CDS
ATAGACATACTCGGACCATT+CGG 0.537038 1_4:-48953049 None:intergenic
AACATCCTAACTGCCCGAAA+GGG 0.537118 1_4:-48952517 None:intergenic
AGTTCCTCAAGACTCAGTTA+TGG 0.539436 1_4:+48951443 Msa0167150:CDS
GATGGTCGAGTTCGTGGAAG+TGG 0.539978 1_4:+48953515 Msa0167150:CDS
GAAACTTCTGAGGCTCGTGA+TGG 0.541777 1_4:-48952619 None:intergenic
TGCCATCCATGCCATCTAGT+AGG 0.546029 1_4:-48953604 None:intergenic
CCAAGAATGCACAAGAGGCT+CGG 0.547108 1_4:+48952719 Msa0167150:CDS
CCATAGTCTCTTCCTTCTGG+TGG 0.547663 1_4:-48953004 None:intergenic
CCGGTAAAGGGAATCTGGAC+TGG 0.548399 1_4:+48953581 Msa0167150:CDS
TCTTGTTGTTCCATTAGTAA+CGG 0.550298 1_4:+48952921 Msa0167150:CDS
TTGATAGAATATGCACTGTA+GGG 0.557054 1_4:-48953768 None:intergenic
GACTGGCCTACTAGATGGCA+TGG 0.557924 1_4:+48953598 Msa0167150:CDS
CAAAGCCAAGAATGCACAAG+AGG 0.560157 1_4:+48952714 Msa0167150:CDS
GGCTGAACTCCTTGTATAAG+GGG 0.560264 1_4:-48953685 None:intergenic
GCTCGACTTGTAATATGTGC+CGG 0.560267 1_4:+48952826 Msa0167150:CDS
AAGGAAGAGACTATGGCAGC+TGG 0.561092 1_4:+48953011 Msa0167150:CDS
AGAAGTTTCCGAAATTCTCA+AGG 0.563263 1_4:+48952633 Msa0167150:CDS
TTCACTGCGCTTAAAAGACT+CGG 0.565546 1_4:-48952866 None:intergenic
TTGATAGAATATGCACTGTA+GGG 0.567365 1_4:-48953706 None:intergenic
TATCTATCTCTACGCTTGGA+TGG 0.570017 1_4:+48953497 Msa0167150:CDS
CGATGATTGTGGATGAAACA+TGG 0.572334 1_4:-48951404 None:intergenic
GAAGCAGAACAAACAATAGT+GGG 0.578711 1_4:-48951509 None:intergenic
TAAAATTGGTACGATGATTG+TGG 0.584880 1_4:-48951415 None:intergenic
GTGGTGTTGGTTATCCACCT+TGG 0.585801 1_4:+48953534 Msa0167150:CDS
CAAAGCAACTTGCCACCAGA+AGG 0.586550 1_4:+48952992 Msa0167150:CDS
ATTACTGTTAACTCATTGAG+AGG 0.589948 1_4:+48952799 Msa0167150:CDS
ACTCGGTTATGAAGGATGCT+GGG 0.605181 1_4:-48952849 None:intergenic
AGAGGCTCGGCTCTCAAGAG+AGG 0.606803 1_4:+48952732 Msa0167150:CDS
GAAGTTTCCGAAATTCTCAA+GGG 0.624267 1_4:+48952634 Msa0167150:CDS
GTCCAGATTCCCTTTACCGG+CGG 0.627179 1_4:-48953578 None:intergenic
AGAAGCACTTGCAACAAAAG+CGG 0.630503 1_4:-48952548 None:intergenic
CTCCAGTTATCACCTCCGAA+TGG 0.631804 1_4:+48953034 Msa0167150:CDS
TGAGACTGAAGAGACTGATG+AGG 0.632957 1_4:+48952969 Msa0167150:CDS
GAGGTGGTGTTGGGAGAGTG+AGG 0.635330 1_4:-48951382 None:intergenic
TTTCGTTGCACAATTACCGC+CGG 0.637674 1_4:+48953562 Msa0167150:CDS
TACTTACACCGGAGACTCAG+AGG 0.639799 1_4:-48953182 None:intergenic
TTGTGGATGAAACATGGAGG+TGG 0.644703 1_4:-48951398 None:intergenic
GACATACTCGGACCATTCGG+AGG 0.644898 1_4:-48953046 None:intergenic
TACAGCCAGGATAAGGAGTG+AGG 0.659492 1_4:+48952486 Msa0167150:CDS
TGTGCAACGAAAGCATTCCA+AGG 0.663502 1_4:-48953551 None:intergenic
TGAACTAACTGATCATCCTG+AGG 0.696649 1_4:-48951253 None:intergenic
CTGTAGGGAAACAAAACCAG+AGG 0.697117 1_4:-48953753 None:intergenic
GCTGAACTCCTTGTATAAGG+GGG 0.708386 1_4:-48953684 None:intergenic
GTGACCATAACTGAGTCTTG+AGG 0.719771 1_4:-48951447 None:intergenic
GCAACGAAAGCATTCCAAGG+TGG 0.729632 1_4:-48953548 None:intergenic
TGATTGTGGATGAAACATGG+AGG 0.830631 1_4:-48951401 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATCATATATTTAGTTT+AGG + chr1_4:48953811-48953830 Msa0167150:three_prime_UTR 10.0%
!!! ACTAAAATTTAGTTGATTTT+TGG - chr1_4:48951901-48951920 None:intergenic 15.0%
!!! ATTTTCTATTATTCAAACTT+AGG - chr1_4:48953336-48953355 None:intergenic 15.0%
!! AGAAGAATTAGATTGTTTAT+TGG - chr1_4:48951534-48951553 None:intergenic 20.0%
!! AATCTAATTCTTCTCAAATT+AGG + chr1_4:48951540-48951559 Msa0167150:CDS 20.0%
!!! ATTTTTCACAAAACAAAAAG+AGG - chr1_4:48951580-48951599 None:intergenic 20.0%
!!! TTGAGGTAATTGTTTTAATA+TGG + chr1_4:48951650-48951669 Msa0167150:intron 20.0%
!!! AAAATTTAGTTGATTTTTGG+TGG - chr1_4:48951898-48951917 None:intergenic 20.0%
!! GAGGAAAAAATTAAAACAAT+TGG - chr1_4:48953113-48953132 None:intergenic 20.0%
!!! TTAACATTTTAGCACTAATA+TGG - chr1_4:48953212-48953231 None:intergenic 20.0%
!!! TATCTGTTTTCTTTTAAACA+AGG + chr1_4:48953444-48953463 Msa0167150:intron 20.0%
!!! ATCTGTTTTCTTTTAAACAA+GGG + chr1_4:48953445-48953464 Msa0167150:intron 20.0%
!! TGTTTTGTGAAAAATGCTTT+TGG + chr1_4:48951585-48951604 Msa0167150:intron 25.0%
! AGTGCAAATAATGTTATGTA+TGG - chr1_4:48951798-48951817 None:intergenic 25.0%
!!! AGAAGCATTGTTTTTTTCAT+TGG + chr1_4:48952013-48952032 Msa0167150:intron 25.0%
!!! CATGTTTTAGATTTAGTTTG+TGG + chr1_4:48952065-48952084 Msa0167150:intron 25.0%
! AAAGATATGAAAATCGCAAA+CGG + chr1_4:48952152-48952171 Msa0167150:intron 25.0%
!! TTTATATCTGCAATTTTGCT+TGG + chr1_4:48952277-48952296 Msa0167150:intron 25.0%
! GTTAGATGAACAAAAAAAGA+TGG + chr1_4:48953150-48953169 Msa0167150:CDS 25.0%
! TTCTTTAGCTGAAAAATTAG+AGG - chr1_4:48953249-48953268 None:intergenic 25.0%
! AAGAAAACAGATACGAAAAA+CGG - chr1_4:48953437-48953456 None:intergenic 25.0%
!!! ATTTCTTTTATTTTTGCCTC+TGG + chr1_4:48953737-48953756 Msa0167150:intron 25.0%
ATACCATAATCATCCAACTA+AGG + chr1_4:48951216-48951235 Msa0167150:five_prime_UTR 30.0%
AGTTTCACTTTCTTTGCATA+TGG + chr1_4:48951275-48951294 Msa0167150:five_prime_UTR 30.0%
AACTACTGAAACATTCACTT+TGG + chr1_4:48951300-48951319 Msa0167150:five_prime_UTR 30.0%
TAAAATTGGTACGATGATTG+TGG - chr1_4:48951418-48951437 None:intergenic 30.0%
TGAGGAACTGAACATAAAAT+TGG - chr1_4:48951432-48951451 None:intergenic 30.0%
! TTTTATCAGAATTCGAACCT+CGG - chr1_4:48951716-48951735 None:intergenic 30.0%
CTAGAGTAGCATTCAATTAA+TGG + chr1_4:48951872-48951891 Msa0167150:intron 30.0%
GGTAACACATAAAATGTAGT+AGG - chr1_4:48951943-48951962 None:intergenic 30.0%
! ATCTAAAACATGTACACCAA+TGG - chr1_4:48952057-48952076 None:intergenic 30.0%
! CTGCATTCATTTGATTTCAA+AGG - chr1_4:48952344-48952363 None:intergenic 30.0%
AAAGAAGCTTTGCATAAAGA+GGG - chr1_4:48952398-48952417 None:intergenic 30.0%
ATAGCAATCTCACAACTAAT+TGG + chr1_4:48952583-48952602 Msa0167150:CDS 30.0%
!! CTTTGTTGTCTCTAAAGTAT+AGG - chr1_4:48952699-48952718 None:intergenic 30.0%
ATTACTGTTAACTCATTGAG+AGG + chr1_4:48952799-48952818 Msa0167150:CDS 30.0%
!! TCTTGTTGTTCCATTAGTAA+CGG + chr1_4:48952921-48952940 Msa0167150:CDS 30.0%
AAATTTCCATCCGTTACTAA+TGG - chr1_4:48952934-48952953 None:intergenic 30.0%
!!! TTTTCCTCGTCTTGTTTAAT+AGG + chr1_4:48953125-48953144 Msa0167150:intron 30.0%
AATATGGATAGTACTTACAC+CGG - chr1_4:48953196-48953215 None:intergenic 30.0%
GAATACACAAGATTTGACAA+CGG - chr1_4:48953407-48953426 None:intergenic 30.0%
TTCTAACAGTTTCAATGTGT+AGG + chr1_4:48953474-48953493 Msa0167150:intron 30.0%
TTGATAGAATATGCACTGTA+GGG - chr1_4:48953709-48953728 None:intergenic 30.0%
TTTGATAGAATATGCACTGT+AGG - chr1_4:48953710-48953729 None:intergenic 30.0%
TTGATAGAATATGCACTGTA+GGG - chr1_4:48953709-48953728 None:intergenic 30.0%
TTTGATAGAATATGCACTGT+AGG - chr1_4:48953710-48953729 None:intergenic 30.0%
TCTCCTTAGTTGGATGATTA+TGG - chr1_4:48951222-48951241 None:intergenic 35.0%
CACATATCTATCTCCTTAGT+TGG - chr1_4:48951232-48951251 None:intergenic 35.0%
ACGTTGTTAATGTCATGGTT+TGG - chr1_4:48951328-48951347 None:intergenic 35.0%
ACCATGACATTAACAACGTT+TGG + chr1_4:48951329-48951348 Msa0167150:exon 35.0%
ACCAAACGTTGTTAATGTCA+TGG - chr1_4:48951333-48951352 None:intergenic 35.0%
GAAGCAGAACAAACAATAGT+GGG - chr1_4:48951512-48951531 None:intergenic 35.0%
TTTGTTACACTGAACTGTTG+AGG + chr1_4:48951633-48951652 Msa0167150:intron 35.0%
TTAATATGGTTCCATTGACG+AGG + chr1_4:48951664-48951683 Msa0167150:intron 35.0%
TAATATGGTTCCATTGACGA+GGG + chr1_4:48951665-48951684 Msa0167150:intron 35.0%
AGACATGAGAACCATAAGAA+GGG - chr1_4:48951969-48951988 None:intergenic 35.0%
TAACACACGGTATTTGATCA+CGG + chr1_4:48952176-48952195 Msa0167150:intron 35.0%
AAGAAGCTTTGCATAAAGAG+GGG - chr1_4:48952397-48952416 None:intergenic 35.0%
GAAAGAAGCTTTGCATAAAG+AGG - chr1_4:48952399-48952418 None:intergenic 35.0%
AGAAGTTTCCGAAATTCTCA+AGG + chr1_4:48952633-48952652 Msa0167150:CDS 35.0%
GAAGTTTCCGAAATTCTCAA+GGG + chr1_4:48952634-48952653 Msa0167150:CDS 35.0%
ATTGGAGCAGTATCTTTGTT+TGG + chr1_4:48952670-48952689 Msa0167150:CDS 35.0%
! CTTAAAAGACTCGGTTATGA+AGG - chr1_4:48952860-48952879 None:intergenic 35.0%
! ACCTTTCACAGAAAGTCTTT+TGG + chr1_4:48952888-48952907 Msa0167150:CDS 35.0%
TCCAAAAGACTTTCTGTGAA+AGG - chr1_4:48952892-48952911 None:intergenic 35.0%
TGTGTTGTCATAGACATACT+CGG - chr1_4:48953061-48953080 None:intergenic 35.0%
GATGAACAAAAAAAGATGGC+AGG + chr1_4:48953154-48953173 Msa0167150:CDS 35.0%
! GTTCTTTTCCATACTCTTGA+AGG + chr1_4:48953637-48953656 Msa0167150:three_prime_UTR 35.0%
TGAACTAACTGATCATCCTG+AGG - chr1_4:48951256-48951275 None:intergenic 40.0%
TGATTGTGGATGAAACATGG+AGG - chr1_4:48951404-48951423 None:intergenic 40.0%
CGATGATTGTGGATGAAACA+TGG - chr1_4:48951407-48951426 None:intergenic 40.0%
AGTTCCTCAAGACTCAGTTA+TGG + chr1_4:48951443-48951462 Msa0167150:CDS 40.0%
TAGTGGGAACAGAAGATCTT+TGG - chr1_4:48951496-48951515 None:intergenic 40.0%
GGAAGCAGAACAAACAATAG+TGG - chr1_4:48951513-48951532 None:intergenic 40.0%
TGGATAGCTCAATTGGTTGA+AGG + chr1_4:48951689-48951708 Msa0167150:intron 40.0%
GGATAGCTCAATTGGTTGAA+GGG + chr1_4:48951690-48951709 Msa0167150:intron 40.0%
CAGACATGAGAACCATAAGA+AGG - chr1_4:48951970-48951989 None:intergenic 40.0%
CTTCTTATGGTTCTCATGTC+TGG + chr1_4:48951968-48951987 Msa0167150:intron 40.0%
GTCTGGCAAAGAATGAGATT+AGG + chr1_4:48951985-48952004 Msa0167150:intron 40.0%
CCAATGGTAAGAGAACAAGA+TGG - chr1_4:48952041-48952060 None:intergenic 40.0%
CCATCTTGTTCTCTTACCAT+TGG + chr1_4:48952038-48952057 Msa0167150:intron 40.0%
AATCGCAAACGGATAACACA+CGG + chr1_4:48952163-48952182 Msa0167150:intron 40.0%
! TTCCCTTCCTTTTCTGCTTT+TGG + chr1_4:48952307-48952326 Msa0167150:intron 40.0%
CTCCAAAAGCAGAAAAGGAA+GGG - chr1_4:48952312-48952331 None:intergenic 40.0%
CTTTGCTCCAAAAGCAGAAA+AGG - chr1_4:48952317-48952336 None:intergenic 40.0%
!! AGAAGCACTTGCAACAAAAG+CGG - chr1_4:48952551-48952570 None:intergenic 40.0%
TTTGTTGCAAGTGCTTCTCT+CGG + chr1_4:48952553-48952572 Msa0167150:CDS 40.0%
GAGAATTTCGGAAACTTCTG+AGG - chr1_4:48952632-48952651 None:intergenic 40.0%
TTCACTGCGCTTAAAAGACT+CGG - chr1_4:48952869-48952888 None:intergenic 40.0%
! ACAGAAAGTCTTTTGGACAG+AGG + chr1_4:48952895-48952914 Msa0167150:CDS 40.0%
! GTTGTTCCATTAGTAACGGA+TGG + chr1_4:48952925-48952944 Msa0167150:CDS 40.0%
TCAGTCTCAAATTCCAAAGC+AGG - chr1_4:48952958-48952977 None:intergenic 40.0%
ATAGACATACTCGGACCATT+CGG - chr1_4:48953052-48953071 None:intergenic 40.0%
!! TCCTCGTCTTGTTTAATAGG+TGG + chr1_4:48953128-48953147 Msa0167150:intron 40.0%
ACCACCTATTAAACAAGACG+AGG - chr1_4:48953132-48953151 None:intergenic 40.0%
TAGGTATCTATCTCTACGCT+TGG + chr1_4:48953493-48953512 Msa0167150:intron 40.0%
TATCTATCTCTACGCTTGGA+TGG + chr1_4:48953497-48953516 Msa0167150:CDS 40.0%
GAGATGATCCTTCAAGAGTA+TGG - chr1_4:48953648-48953667 None:intergenic 40.0%
GGAGATAGATATGTGACCTC+AGG + chr1_4:48951237-48951256 Msa0167150:five_prime_UTR 45.0%
TGAAACATGGAGGTGGTGTT+GGG - chr1_4:48951394-48951413 None:intergenic 45.0%
ATGAAACATGGAGGTGGTGT+TGG - chr1_4:48951395-48951414 None:intergenic 45.0%
TTGTGGATGAAACATGGAGG+TGG - chr1_4:48951401-48951420 None:intergenic 45.0%
GTGACCATAACTGAGTCTTG+AGG - chr1_4:48951450-48951469 None:intergenic 45.0%
GTGTTACCTCACCCTTCTTA+TGG + chr1_4:48951955-48951974 Msa0167150:intron 45.0%
TGAGAACCATAAGAAGGGTG+AGG - chr1_4:48951964-48951983 None:intergenic 45.0%
ACGGTATTTGATCACGGAGT+TGG + chr1_4:48952182-48952201 Msa0167150:intron 45.0%
CGGTATTTGATCACGGAGTT+GGG + chr1_4:48952183-48952202 Msa0167150:intron 45.0%
GCTCCAAAAGCAGAAAAGGA+AGG - chr1_4:48952313-48952332 None:intergenic 45.0%
! GATTGATGAAGCATCACTGC+AGG - chr1_4:48952437-48952456 None:intergenic 45.0%
TAGAACCTCACTCCTTATCC+TGG - chr1_4:48952494-48952513 None:intergenic 45.0%
GTGAGGTTCTATCTCCCTTT+CGG + chr1_4:48952503-48952522 Msa0167150:CDS 45.0%
TGAGGTTCTATCTCCCTTTC+GGG + chr1_4:48952504-48952523 Msa0167150:CDS 45.0%
AACATCCTAACTGCCCGAAA+GGG - chr1_4:48952520-48952539 None:intergenic 45.0%
TTGTTGCAAGTGCTTCTCTC+GGG + chr1_4:48952554-48952573 Msa0167150:CDS 45.0%
TCCGAAATTCTCAAGGGTCT+CGG + chr1_4:48952640-48952659 Msa0167150:CDS 45.0%
CAAAGCCAAGAATGCACAAG+AGG + chr1_4:48952714-48952733 Msa0167150:CDS 45.0%
! GCTCGACTTGTAATATGTGC+CGG + chr1_4:48952826-48952845 Msa0167150:CDS 45.0%
ACTCGGTTATGAAGGATGCT+GGG - chr1_4:48952852-48952871 None:intergenic 45.0%
GGATGGAAATTTGCCTGCTT+TGG + chr1_4:48952942-48952961 Msa0167150:CDS 45.0%
TGAGACTGAAGAGACTGATG+AGG + chr1_4:48952969-48952988 Msa0167150:CDS 45.0%
!! TGTGCAACGAAAGCATTCCA+AGG - chr1_4:48953554-48953573 None:intergenic 45.0%
TTTCGTTGCACAATTACCGC+CGG + chr1_4:48953562-48953581 Msa0167150:CDS 45.0%
ATACTCCTCCCCCTTATACA+AGG + chr1_4:48953676-48953695 Msa0167150:three_prime_UTR 45.0%
GCTGAACTCCTTGTATAAGG+GGG - chr1_4:48953687-48953706 None:intergenic 45.0%
GGCTGAACTCCTTGTATAAG+GGG - chr1_4:48953688-48953707 None:intergenic 45.0%
GGGCTGAACTCCTTGTATAA+GGG - chr1_4:48953689-48953708 None:intergenic 45.0%
AGGGCTGAACTCCTTGTATA+AGG - chr1_4:48953690-48953709 None:intergenic 45.0%
CTGTAGGGAAACAAAACCAG+AGG - chr1_4:48953756-48953775 None:intergenic 45.0%
ATGGTTCCATTGACGAGGGT+TGG + chr1_4:48951669-48951688 Msa0167150:intron 50.0%
AGCTATCCAACCCTCGTCAA+TGG - chr1_4:48951678-48951697 None:intergenic 50.0%
CGAGGGTTGGATAGCTCAAT+TGG + chr1_4:48951682-48951701 Msa0167150:intron 50.0%
TGTGCTCAAATCTCCGACTG+CGG + chr1_4:48952211-48952230 Msa0167150:intron 50.0%
TGTTCTTCAGCTCTACAGCC+AGG + chr1_4:48952473-48952492 Msa0167150:intron 50.0%
TCAGCTCTACAGCCAGGATA+AGG + chr1_4:48952479-48952498 Msa0167150:intron 50.0%
TACAGCCAGGATAAGGAGTG+AGG + chr1_4:48952486-48952505 Msa0167150:CDS 50.0%
TATCTCCCTTTCGGGCAGTT+AGG + chr1_4:48952512-48952531 Msa0167150:CDS 50.0%
GAACATCCTAACTGCCCGAA+AGG - chr1_4:48952521-48952540 None:intergenic 50.0%
!! GAAACTTCTGAGGCTCGTGA+TGG - chr1_4:48952622-48952641 None:intergenic 50.0%
GCCGAGACCCTTGAGAATTT+CGG - chr1_4:48952644-48952663 None:intergenic 50.0%
!! AAGGGTCTCGGCATTGACAT+TGG + chr1_4:48952652-48952671 Msa0167150:CDS 50.0%
CCAAGAATGCACAAGAGGCT+CGG + chr1_4:48952719-48952738 Msa0167150:CDS 50.0%
! GACTCGGTTATGAAGGATGC+TGG - chr1_4:48952853-48952872 None:intergenic 50.0%
CAAAGCAACTTGCCACCAGA+AGG + chr1_4:48952992-48953011 Msa0167150:CDS 50.0%
CCATAGTCTCTTCCTTCTGG+TGG - chr1_4:48953007-48953026 None:intergenic 50.0%
CCACCAGAAGGAAGAGACTA+TGG + chr1_4:48953004-48953023 Msa0167150:CDS 50.0%
CTGCCATAGTCTCTTCCTTC+TGG - chr1_4:48953010-48953029 None:intergenic 50.0%
AAGGAAGAGACTATGGCAGC+TGG + chr1_4:48953011-48953030 Msa0167150:CDS 50.0%
CTCCAGTTATCACCTCCGAA+TGG + chr1_4:48953034-48953053 Msa0167150:CDS 50.0%
GACCATTCGGAGGTGATAAC+TGG - chr1_4:48953039-48953058 None:intergenic 50.0%
AGGTGTATCCTCTGAGTCTC+CGG + chr1_4:48953174-48953193 Msa0167150:CDS 50.0%
TACTTACACCGGAGACTCAG+AGG - chr1_4:48953185-48953204 None:intergenic 50.0%
CACTGCAGCCACTATGTAGT+CGG + chr1_4:48953356-48953375 Msa0167150:intron 50.0%
CTTCGTCTCCGACTACATAG+TGG - chr1_4:48953367-48953386 None:intergenic 50.0%
!! GTGGTGTTGGTTATCCACCT+TGG + chr1_4:48953534-48953553 Msa0167150:CDS 50.0%
!! GCAACGAAAGCATTCCAAGG+TGG - chr1_4:48953551-48953570 None:intergenic 50.0%
TGCACAATTACCGCCGGTAA+AGG + chr1_4:48953568-48953587 Msa0167150:CDS 50.0%
GCACAATTACCGCCGGTAAA+GGG + chr1_4:48953569-48953588 Msa0167150:CDS 50.0%
CCAGTCCAGATTCCCTTTAC+CGG - chr1_4:48953584-48953603 None:intergenic 50.0%
!! ATCTGGACTGGCCTACTAGA+TGG + chr1_4:48953593-48953612 Msa0167150:CDS 50.0%
TGCCATCCATGCCATCTAGT+AGG - chr1_4:48953607-48953626 None:intergenic 50.0%
GAACTCCTTGTATAAGGGGG+AGG - chr1_4:48953684-48953703 None:intergenic 50.0%
CTCAATTGGTTGAAGGGCCG+AGG + chr1_4:48951696-48951715 Msa0167150:intron 55.0%
TCAAATCTCCGACTGCGGAG+CGG + chr1_4:48952216-48952235 Msa0167150:intron 55.0%
CCGAGCCTCTTGTGCATTCT+TGG - chr1_4:48952722-48952741 None:intergenic 55.0%
GGTTATGAAGGATGCTGGGC+CGG - chr1_4:48952848-48952867 None:intergenic 55.0%
GACATACTCGGACCATTCGG+AGG - chr1_4:48953049-48953068 None:intergenic 55.0%
GTCGGAGACGAAGACACAGT+TGG + chr1_4:48953374-48953393 Msa0167150:intron 55.0%
GATGGTCGAGTTCGTGGAAG+TGG + chr1_4:48953515-48953534 Msa0167150:CDS 55.0%
CGAGTTCGTGGAAGTGGTGT+TGG + chr1_4:48953521-48953540 Msa0167150:CDS 55.0%
TACCGCCGGTAAAGGGAATC+TGG + chr1_4:48953576-48953595 Msa0167150:CDS 55.0%
GTCCAGATTCCCTTTACCGG+CGG - chr1_4:48953581-48953600 None:intergenic 55.0%
CCGGTAAAGGGAATCTGGAC+TGG + chr1_4:48953581-48953600 Msa0167150:CDS 55.0%
!! GACTGGCCTACTAGATGGCA+TGG + chr1_4:48953598-48953617 Msa0167150:CDS 55.0%
GGCCTACTAGATGGCATGGA+TGG + chr1_4:48953602-48953621 Msa0167150:CDS 55.0%
! GAGGTGGTGTTGGGAGAGTG+AGG - chr1_4:48951385-48951404 None:intergenic 60.0%
CAAATCTCCGACTGCGGAGC+GGG + chr1_4:48952217-48952236 Msa0167150:intron 60.0%
AGAGGCTCGGCTCTCAAGAG+AGG + chr1_4:48952732-48952751 Msa0167150:CDS 60.0%
CGCTTGGATGGTCGAGTTCG+TGG + chr1_4:48953509-48953528 Msa0167150:CDS 60.0%
TATGCAGCCCGCTCCGCAGT+CGG - chr1_4:48952227-48952246 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 48951208 48953897 48951208 ID=Msa0167150;Name=Msa0167150
chr1_4 mRNA 48951208 48953897 48951208 ID=Msa0167150-mRNA-1;Parent=Msa0167150;Name=Msa0167150-mRNA-1;_AED=0.04;_eAED=0.04;_QI=124|1|1|1|0.75|0.6|5|243|332
chr1_4 exon 48951208 48951561 48951208 ID=Msa0167150-mRNA-1:exon:14307;Parent=Msa0167150-mRNA-1
chr1_4 exon 48952483 48953061 48952483 ID=Msa0167150-mRNA-1:exon:14308;Parent=Msa0167150-mRNA-1
chr1_4 exon 48953147 48953197 48953147 ID=Msa0167150-mRNA-1:exon:14309;Parent=Msa0167150-mRNA-1
chr1_4 exon 48953496 48953718 48953496 ID=Msa0167150-mRNA-1:exon:14310;Parent=Msa0167150-mRNA-1
chr1_4 exon 48953739 48953897 48953739 ID=Msa0167150-mRNA-1:exon:14311;Parent=Msa0167150-mRNA-1
chr1_4 five_prime_UTR 48951208 48951331 48951208 ID=Msa0167150-mRNA-1:five_prime_utr;Parent=Msa0167150-mRNA-1
chr1_4 CDS 48951332 48951561 48951332 ID=Msa0167150-mRNA-1:cds;Parent=Msa0167150-mRNA-1
chr1_4 CDS 48952483 48953061 48952483 ID=Msa0167150-mRNA-1:cds;Parent=Msa0167150-mRNA-1
chr1_4 CDS 48953147 48953197 48953147 ID=Msa0167150-mRNA-1:cds;Parent=Msa0167150-mRNA-1
chr1_4 CDS 48953496 48953634 48953496 ID=Msa0167150-mRNA-1:cds;Parent=Msa0167150-mRNA-1
chr1_4 three_prime_UTR 48953635 48953718 48953635 ID=Msa0167150-mRNA-1:three_prime_utr;Parent=Msa0167150-mRNA-1
chr1_4 three_prime_UTR 48953739 48953897 48953739 ID=Msa0167150-mRNA-1:three_prime_utr;Parent=Msa0167150-mRNA-1
Gene Sequence

>Msa0167150

ATGACATTAACAACGTTTGGTTCTACTTCTGCTAACTCTAACACTTTGTTCCTCACTCTCCCAACACCACCTCCATGTTTCATCCACAATCATCGTACCAATTTTATGTTCAGTTCCTCAAGACTCAGTTATGGTCACACTCACACTCTTTACTATTCTCACCAAAGATCTTCTGTTCCCACTATTGTTTGTTCTGCTTCCAATAAACAATCTAATTCTTCTCAAATTAGCTCTACAGCCAGGATAAGGAGTGAGGTTCTATCTCCCTTTCGGGCAGTTAGGATGTTCTTTTACACCGCTTTTGTTGCAAGTGCTTCTCTCGGGACACTCATAGCAATCTCACAACTAATTGGTGCATTGTCTAATCCATCACGAGCCTCAGAAGTTTCCGAAATTCTCAAGGGTCTCGGCATTGACATTGGAGCAGTATCTTTGTTTGGTTTCCTATACTTTAGAGACAACAAAGCCAAGAATGCACAAGAGGCTCGGCTCTCAAGAGAGGAATTTTTGTCAAATCTTAAGCTACGTGTGAGCGAGAAGAAGATCATTACTGTTAACTCATTGAGAGGAATTGCTCGACTTGTAATATGTGCCGGCCCAGCATCCTTCATAACCGAGTCTTTTAAGCGCAGTGAACCTTTCACAGAAAGTCTTTTGGACAGAGGAGTTCTTGTTGTTCCATTAGTAACGGATGGAAATTTGCCTGCTTTGGAATTTGAGACTGAAGAGACTGATGAGGCAAAGCAACTTGCCACCAGAAGGAAGAGACTATGGCAGCTGGCTCCAGTTATCACCTCCGAATGGTCCGAGTGGTTAGATGAACAAAAAAAGATGGCAGGTGTATCCTCTGAGTCTCCGGTGTATCTATCTCTACGCTTGGATGGTCGAGTTCGTGGAAGTGGTGTTGGTTATCCACCTTGGAATGCTTTCGTTGCACAATTACCGCCGGTAAAGGGAATCTGGACTGGCCTACTAGATGGCATGGATGGCAGAGTTTAG

Protein sequence

>Msa0167150

MTLTTFGSTSANSNTLFLTLPTPPPCFIHNHRTNFMFSSSRLSYGHTHTLYYSHQRSSVPTIVCSASNKQSNSSQISSTARIRSEVLSPFRAVRMFFYTAFVASASLGTLIAISQLIGALSNPSRASEVSEILKGLGIDIGAVSLFGFLYFRDNKAKNAQEARLSREEFLSNLKLRVSEKKIITVNSLRGIARLVICAGPASFITESFKRSEPFTESLLDRGVLVVPLVTDGNLPALEFETEETDEAKQLATRRKRLWQLAPVITSEWSEWLDEQKKMAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWTGLLDGMDGRV*