AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0519090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519090 MtrunA17_Chr3g0131551 95.495 222 10 0 1 222 1 222 1.37e-161 445
Msa0519090 MtrunA17_Chr3g0131541 75.229 218 46 3 7 222 1 212 6.58e-120 339
Msa0519090 MtrunA17_Chr8g0385631 64.737 190 64 2 7 196 1 187 1.18e-85 253
Msa0519090 MtrunA17_Chr8g0385601 64.062 192 64 4 7 196 1 189 1.96e-84 249
Msa0519090 MtrunA17_Chr8g0385611 55.975 159 68 2 7 165 1 157 3.98e-58 181
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519090 AT3G23760.1 61.828 186 60 4 18 196 9 190 1.15e-80 239
Msa0519090 AT4G14100.1 60.656 183 65 4 17 196 7 185 7.89e-78 233

Find 73 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACTGTTCATGAGGATTT+TGG 0.136762 3_4:-71027639 Msa0519090:CDS
CGACAGCATTGAGTTGATTT+TGG 0.167038 3_4:+71028356 None:intergenic
AGTGTTTGTAATTATGAAAA+TGG 0.266071 3_4:-71027577 Msa0519090:three_prime_UTR
GCTCTTGTTCATAAACATTA+AGG 0.279361 3_4:+71028441 None:intergenic
ATAATTTCCTTTGTAATGTT+TGG 0.290309 3_4:-71028183 Msa0519090:CDS
CTTGAGGGCGCTACGTATTT+AGG 0.303379 3_4:-71028220 Msa0519090:CDS
CTTGCATTCAAATATCTTAT+CGG 0.310273 3_4:-71027368 Msa0519090:three_prime_UTR
TCTATTTCTGTTCTGATGAT+AGG 0.311754 3_4:-71027531 Msa0519090:three_prime_UTR
TCCGGCCAAACAGCCGGAAT+TGG 0.340541 3_4:+71028475 None:intergenic
GTAGCGCCCTCAAGAAAATT+AGG 0.340967 3_4:+71028229 None:intergenic
TTATGTAAGGTTTCACATAA+AGG 0.351641 3_4:-71027160 Msa0519090:three_prime_UTR
TATGTAAGGTTTCACATAAA+GGG 0.361091 3_4:-71027159 Msa0519090:three_prime_UTR
AAGAAAGACTAGAGGATGAT+TGG 0.365331 3_4:-71027206 Msa0519090:three_prime_UTR
CTGAGCCAATTCCGGCTGTT+TGG 0.366949 3_4:-71028480 Msa0519090:CDS
GGTTTGTGACTCTCGATATC+AGG 0.371771 3_4:-71027426 Msa0519090:three_prime_UTR
TTCGATGGCTGAGCCAATTC+CGG 0.379483 3_4:-71028488 Msa0519090:CDS
CATACACCTTAACAAAATTC+AGG 0.393845 3_4:-71027272 Msa0519090:three_prime_UTR
GTTAAGTGGTTCTTCTACTC+AGG 0.396357 3_4:-71028109 Msa0519090:intron
TTGCATTCAAATATCTTATC+GGG 0.409476 3_4:-71027367 Msa0519090:three_prime_UTR
GAGAGAAGAGAATGACATAT+AGG 0.411659 3_4:+71028524 None:intergenic
GAGTAGAAGAACCACTTAAC+AGG 0.415932 3_4:+71028112 None:intergenic
GGAGAATACCTACAGGAAAC+TGG 0.417162 3_4:+71028254 None:intergenic
GCCAATTCCGGCTGTTTGGC+CGG 0.420441 3_4:-71028476 Msa0519090:CDS
CTGCAATAGAACAACTATCT+AGG 0.426683 3_4:-71028552 Msa0519090:CDS
TCCTGCAGAAAGTGGACTTA+TGG 0.436493 3_4:-71028414 Msa0519090:CDS
TGTCATTCTCTTCTCTCTCT+CGG 0.441820 3_4:-71028518 Msa0519090:CDS
GTAATAGAGACACTGACAAT+AGG 0.462522 3_4:+71027237 None:intergenic
GTCTGATTGAAGCAGTATAT+AGG 0.470699 3_4:+71027684 None:intergenic
CGCTCATGTAATGACGTTTG+AGG 0.471029 3_4:-71027742 Msa0519090:CDS
ATGTTGAAGTTTCGACCGTT+AGG 0.477068 3_4:+71028382 None:intergenic
AACTGCTCCGGCCAAACAGC+CGG 0.482218 3_4:+71028469 None:intergenic
CATCAGAACAGAAATAGAAT+AGG 0.482543 3_4:+71027536 None:intergenic
CATGTAATGACGTTTGAGGT+TGG 0.496845 3_4:-71027738 Msa0519090:CDS
TTGTTCTATTGCAGAGGCCA+TGG 0.498883 3_4:+71028561 None:intergenic
GCTTGAGGAACCGCATTGGC+AGG 0.504494 3_4:-71027709 Msa0519090:CDS
TTTATAAACTGTATATGTTG+TGG 0.507750 3_4:-71027314 Msa0519090:three_prime_UTR
GGGATGGAGAGTGTAGATGA+AGG 0.516088 3_4:+71028300 None:intergenic
ACCATAAGTCCACTTTCTGC+AGG 0.523892 3_4:+71028413 None:intergenic
TCGTCGTTTACGACCTCGAA+TGG 0.528379 3_4:-71028336 Msa0519090:CDS
TGCAATGGCGGTCTGAGGGA+TGG 0.534618 3_4:+71028284 None:intergenic
AATAAGAGAAACACTCAAAG+TGG 0.535251 3_4:+71028607 None:intergenic
GACCTTGCAATGGCGGTCTG+AGG 0.545191 3_4:+71028279 None:intergenic
TTATGGTACGACTGGCCTAA+CGG 0.548138 3_4:-71028397 Msa0519090:CDS
GAGCGGAGTCCTGCAGAAAG+TGG 0.548813 3_4:-71028422 Msa0519090:CDS
CACTGCTTGAGGAACCGCAT+TGG 0.549270 3_4:-71027713 Msa0519090:CDS
ACCTTGCAATGGCGGTCTGA+GGG 0.550186 3_4:+71028280 None:intergenic
TCACTCGTAGACCTGTTAAG+TGG 0.552659 3_4:-71028123 Msa0519090:CDS
TCCCTCAGACCGCCATTGCA+AGG 0.555841 3_4:-71028281 Msa0519090:CDS
ATTAAGGCATGAAACTGCTC+CGG 0.562441 3_4:+71028457 None:intergenic
AGGTACCGTTGGTCCATTCG+AGG 0.563492 3_4:+71028323 None:intergenic
ATGGAGAGTGTAGATGAAGG+AGG 0.563676 3_4:+71028303 None:intergenic
AAGACTAGAGGATGATTGGA+AGG 0.569403 3_4:-71027202 Msa0519090:three_prime_UTR
AAGTGGACTTATGGTACGAC+TGG 0.577314 3_4:-71028405 Msa0519090:CDS
TGAGGTTGGAGCACTGCTTG+AGG 0.579016 3_4:-71027724 Msa0519090:CDS
AAAATCCTCATGAACAGTAG+TGG 0.580647 3_4:+71027641 None:intergenic
ACTGGACGACCTTGCAATGG+CGG 0.580698 3_4:+71028272 None:intergenic
TCTCTCGGCTTCATATTCGA+TGG 0.592702 3_4:-71028503 Msa0519090:CDS
CTTTCGTCCAAACATTACAA+AGG 0.600135 3_4:+71028176 None:intergenic
GATGAAACTTAGAGCAGCCA+TGG 0.603003 3_4:-71028578 Msa0519090:CDS
GTAGATGAAGGAGGTACCGT+TGG 0.604808 3_4:+71028312 None:intergenic
CGCCCTCAAGAAAATTAGGA+CGG 0.606966 3_4:+71028233 None:intergenic
AAGGTCGTCCAGTTTCCTGT+AGG 0.614277 3_4:-71028262 Msa0519090:CDS
ACAAACCATTTAGAAAACAA+TGG 0.616253 3_4:+71027442 None:intergenic
AGATAGTTGTTCTATTGCAG+AGG 0.619269 3_4:+71028555 None:intergenic
TACGACCTCGAATGGACCAA+CGG 0.625467 3_4:-71028328 Msa0519090:CDS
AGAATCCACTACTGTTCATG+AGG 0.630604 3_4:-71027646 Msa0519090:CDS
TTAGGACGGAGAATACCTAC+AGG 0.634745 3_4:+71028247 None:intergenic
GAAACTGGACGACCTTGCAA+TGG 0.636092 3_4:+71028269 None:intergenic
CTCAAACGTCATTACATGAG+CGG 0.651282 3_4:+71027743 None:intergenic
TATCAGGACAAGATCAAGAG+TGG 0.655946 3_4:-71027410 Msa0519090:three_prime_UTR
TTAATGTTTATGAACAAGAG+CGG 0.658259 3_4:-71028439 Msa0519090:CDS
TGATGAATAAGAAAGACTAG+AGG 0.673133 3_4:-71027214 Msa0519090:three_prime_UTR
TATATAGGAGCCTGCCAATG+CGG 0.702014 3_4:+71027699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTAATAAGCTCAAT+CGG + chr3_4:71027910-71027929 None:intergenic 15.0%
!!! ATAGTGATAATTTTAATAGA+TGG - chr3_4:71028010-71028029 Msa0519090:intron 15.0%
!! TAATAATTAATAAGCTCAAT+CGG + chr3_4:71027910-71027929 None:intergenic 15.0%
!!! ATAGTGATAATTTTAATAGA+TGG - chr3_4:71028010-71028029 Msa0519090:intron 15.0%
!!! AAACAAAAAACAAGTCATTT+TGG + chr3_4:71027157-71027176 None:intergenic 20.0%
!! ATAATTTCCTTTGTAATGTT+TGG - chr3_4:71027601-71027620 Msa0519090:CDS 20.0%
!!! TCTCTTATATTATCACTTTT+GGG - chr3_4:71027710-71027729 Msa0519090:CDS 20.0%
!! AGTGTTTGTAATTATGAAAA+TGG - chr3_4:71028207-71028226 Msa0519090:CDS 20.0%
!! TTTATAAACTGTATATGTTG+TGG - chr3_4:71028470-71028489 Msa0519090:CDS 20.0%
!!! AAACAAAAAACAAGTCATTT+TGG + chr3_4:71027157-71027176 None:intergenic 20.0%
!! ATAATTTCCTTTGTAATGTT+TGG - chr3_4:71027601-71027620 Msa0519090:CDS 20.0%
!!! TCTCTTATATTATCACTTTT+GGG - chr3_4:71027710-71027729 Msa0519090:CDS 20.0%
!! AGTGTTTGTAATTATGAAAA+TGG - chr3_4:71028207-71028226 Msa0519090:CDS 20.0%
!! TTTATAAACTGTATATGTTG+TGG - chr3_4:71028470-71028489 Msa0519090:CDS 20.0%
! TTAATGTTTATGAACAAGAG+CGG - chr3_4:71027345-71027364 Msa0519090:three_prime_UTR 25.0%
!! CTCTCTTATATTATCACTTT+TGG - chr3_4:71027709-71027728 Msa0519090:CDS 25.0%
! ATGACAAGATAAGCTTAAAT+AGG + chr3_4:71027751-71027770 None:intergenic 25.0%
!! CTTATCTTGTCATACATTTT+GGG - chr3_4:71027758-71027777 Msa0519090:CDS 25.0%
! ATTCACTTCATTCAATATCT+TGG + chr3_4:71027942-71027961 None:intergenic 25.0%
!!! GTGATAATTTTAATAGATGG+AGG - chr3_4:71028013-71028032 Msa0519090:intron 25.0%
!! ATTTTTCTATCAGTCTTCTT+GGG - chr3_4:71028310-71028329 Msa0519090:CDS 25.0%
!! ATGAACCATTGTTTTCTAAA+TGG - chr3_4:71028337-71028356 Msa0519090:CDS 25.0%
! ACAAACCATTTAGAAAACAA+TGG + chr3_4:71028345-71028364 None:intergenic 25.0%
! CTTGCATTCAAATATCTTAT+CGG - chr3_4:71028416-71028435 Msa0519090:CDS 25.0%
! TTGCATTCAAATATCTTATC+GGG - chr3_4:71028417-71028436 Msa0519090:CDS 25.0%
! GAAACCTTACATAAAAAGTT+TGG + chr3_4:71028618-71028637 None:intergenic 25.0%
! TTATGTAAGGTTTCACATAA+AGG - chr3_4:71028624-71028643 Msa0519090:five_prime_UTR 25.0%
! TATGTAAGGTTTCACATAAA+GGG - chr3_4:71028625-71028644 Msa0519090:five_prime_UTR 25.0%
! TTAATGTTTATGAACAAGAG+CGG - chr3_4:71027345-71027364 Msa0519090:three_prime_UTR 25.0%
!! CTCTCTTATATTATCACTTT+TGG - chr3_4:71027709-71027728 Msa0519090:CDS 25.0%
! ATGACAAGATAAGCTTAAAT+AGG + chr3_4:71027751-71027770 None:intergenic 25.0%
!! CTTATCTTGTCATACATTTT+GGG - chr3_4:71027758-71027777 Msa0519090:CDS 25.0%
! ATTCACTTCATTCAATATCT+TGG + chr3_4:71027942-71027961 None:intergenic 25.0%
!!! GTGATAATTTTAATAGATGG+AGG - chr3_4:71028013-71028032 Msa0519090:intron 25.0%
!! ATTTTTCTATCAGTCTTCTT+GGG - chr3_4:71028310-71028329 Msa0519090:CDS 25.0%
!! ATGAACCATTGTTTTCTAAA+TGG - chr3_4:71028337-71028356 Msa0519090:CDS 25.0%
! ACAAACCATTTAGAAAACAA+TGG + chr3_4:71028345-71028364 None:intergenic 25.0%
! CTTGCATTCAAATATCTTAT+CGG - chr3_4:71028416-71028435 Msa0519090:CDS 25.0%
! TTGCATTCAAATATCTTATC+GGG - chr3_4:71028417-71028436 Msa0519090:CDS 25.0%
! GAAACCTTACATAAAAAGTT+TGG + chr3_4:71028618-71028637 None:intergenic 25.0%
! TTATGTAAGGTTTCACATAA+AGG - chr3_4:71028624-71028643 Msa0519090:five_prime_UTR 25.0%
! TATGTAAGGTTTCACATAAA+GGG - chr3_4:71028625-71028644 Msa0519090:five_prime_UTR 25.0%
AATAAGAGAAACACTCAAAG+TGG + chr3_4:71027180-71027199 None:intergenic 30.0%
GCTCTTGTTCATAAACATTA+AGG + chr3_4:71027346-71027365 None:intergenic 30.0%
!! TATCACTTTTGGGCTATATT+TGG - chr3_4:71027720-71027739 Msa0519090:CDS 30.0%
! GCTTATCTTGTCATACATTT+TGG - chr3_4:71027757-71027776 Msa0519090:CDS 30.0%
CATCAGAACAGAAATAGAAT+AGG + chr3_4:71028251-71028270 None:intergenic 30.0%
!! TCTATTTCTGTTCTGATGAT+AGG - chr3_4:71028253-71028272 Msa0519090:CDS 30.0%
GAAGACTGATAGAAAAATGA+TGG + chr3_4:71028308-71028327 None:intergenic 30.0%
! CATTTTTCTATCAGTCTTCT+TGG - chr3_4:71028309-71028328 Msa0519090:CDS 30.0%
CATACACCTTAACAAAATTC+AGG - chr3_4:71028512-71028531 Msa0519090:CDS 30.0%
TGATGAATAAGAAAGACTAG+AGG - chr3_4:71028570-71028589 Msa0519090:CDS 30.0%
! CAAGCCAAACTTTTTATGTA+AGG - chr3_4:71028611-71028630 Msa0519090:five_prime_UTR 30.0%
AATAAGAGAAACACTCAAAG+TGG + chr3_4:71027180-71027199 None:intergenic 30.0%
GCTCTTGTTCATAAACATTA+AGG + chr3_4:71027346-71027365 None:intergenic 30.0%
!! TATCACTTTTGGGCTATATT+TGG - chr3_4:71027720-71027739 Msa0519090:CDS 30.0%
! GCTTATCTTGTCATACATTT+TGG - chr3_4:71027757-71027776 Msa0519090:CDS 30.0%
CATCAGAACAGAAATAGAAT+AGG + chr3_4:71028251-71028270 None:intergenic 30.0%
!! TCTATTTCTGTTCTGATGAT+AGG - chr3_4:71028253-71028272 Msa0519090:CDS 30.0%
GAAGACTGATAGAAAAATGA+TGG + chr3_4:71028308-71028327 None:intergenic 30.0%
! CATTTTTCTATCAGTCTTCT+TGG - chr3_4:71028309-71028328 Msa0519090:CDS 30.0%
CATACACCTTAACAAAATTC+AGG - chr3_4:71028512-71028531 Msa0519090:CDS 30.0%
TGATGAATAAGAAAGACTAG+AGG - chr3_4:71028570-71028589 Msa0519090:CDS 30.0%
! CAAGCCAAACTTTTTATGTA+AGG - chr3_4:71028611-71028630 Msa0519090:five_prime_UTR 30.0%
AGATAGTTGTTCTATTGCAG+AGG + chr3_4:71027232-71027251 None:intergenic 35.0%
CTGCAATAGAACAACTATCT+AGG - chr3_4:71027232-71027251 Msa0519090:three_prime_UTR 35.0%
GAGAGAAGAGAATGACATAT+AGG + chr3_4:71027263-71027282 None:intergenic 35.0%
CTTTCGTCCAAACATTACAA+AGG + chr3_4:71027611-71027630 None:intergenic 35.0%
GTCTGATTGAAGCAGTATAT+AGG + chr3_4:71028103-71028122 None:intergenic 35.0%
AAAATCCTCATGAACAGTAG+TGG + chr3_4:71028146-71028165 None:intergenic 35.0%
! ACTACTGTTCATGAGGATTT+TGG - chr3_4:71028145-71028164 Msa0519090:CDS 35.0%
! CTACTGTTCATGAGGATTTT+GGG - chr3_4:71028146-71028165 Msa0519090:CDS 35.0%
! ACGTTGCCTGAATTTTGTTA+AGG + chr3_4:71028521-71028540 None:intergenic 35.0%
GTAATAGAGACACTGACAAT+AGG + chr3_4:71028550-71028569 None:intergenic 35.0%
AAGAAAGACTAGAGGATGAT+TGG - chr3_4:71028578-71028597 Msa0519090:CDS 35.0%
AGATAGTTGTTCTATTGCAG+AGG + chr3_4:71027232-71027251 None:intergenic 35.0%
CTGCAATAGAACAACTATCT+AGG - chr3_4:71027232-71027251 Msa0519090:three_prime_UTR 35.0%
GAGAGAAGAGAATGACATAT+AGG + chr3_4:71027263-71027282 None:intergenic 35.0%
CTTTCGTCCAAACATTACAA+AGG + chr3_4:71027611-71027630 None:intergenic 35.0%
GTCTGATTGAAGCAGTATAT+AGG + chr3_4:71028103-71028122 None:intergenic 35.0%
AAAATCCTCATGAACAGTAG+TGG + chr3_4:71028146-71028165 None:intergenic 35.0%
! ACTACTGTTCATGAGGATTT+TGG - chr3_4:71028145-71028164 Msa0519090:CDS 35.0%
! CTACTGTTCATGAGGATTTT+GGG - chr3_4:71028146-71028165 Msa0519090:CDS 35.0%
! ACGTTGCCTGAATTTTGTTA+AGG + chr3_4:71028521-71028540 None:intergenic 35.0%
GTAATAGAGACACTGACAAT+AGG + chr3_4:71028550-71028569 None:intergenic 35.0%
AAGAAAGACTAGAGGATGAT+TGG - chr3_4:71028578-71028597 Msa0519090:CDS 35.0%
TGTCATTCTCTTCTCTCTCT+CGG - chr3_4:71027266-71027285 Msa0519090:three_prime_UTR 40.0%
ATTAAGGCATGAAACTGCTC+CGG + chr3_4:71027330-71027349 None:intergenic 40.0%
ATGTTGAAGTTTCGACCGTT+AGG + chr3_4:71027405-71027424 None:intergenic 40.0%
!!! CGACAGCATTGAGTTGATTT+TGG + chr3_4:71027431-71027450 None:intergenic 40.0%
! TCTCCGTCCTAATTTTCTTG+AGG - chr3_4:71027548-71027567 Msa0519090:three_prime_UTR 40.0%
! CTCCGTCCTAATTTTCTTGA+GGG - chr3_4:71027549-71027568 Msa0519090:three_prime_UTR 40.0%
GAGTAGAAGAACCACTTAAC+AGG + chr3_4:71027675-71027694 None:intergenic 40.0%
GTTAAGTGGTTCTTCTACTC+AGG - chr3_4:71027675-71027694 Msa0519090:CDS 40.0%
CTCAAACGTCATTACATGAG+CGG + chr3_4:71028044-71028063 None:intergenic 40.0%
! CATGTAATGACGTTTGAGGT+TGG - chr3_4:71028046-71028065 Msa0519090:intron 40.0%
AGAATCCACTACTGTTCATG+AGG - chr3_4:71028138-71028157 Msa0519090:CDS 40.0%
!! GATTTTGGGAGTTTGATGAG+AGG - chr3_4:71028160-71028179 Msa0519090:CDS 40.0%
TATCAGGACAAGATCAAGAG+TGG - chr3_4:71028374-71028393 Msa0519090:CDS 40.0%
AAGACTAGAGGATGATTGGA+AGG - chr3_4:71028582-71028601 Msa0519090:exon 40.0%
TGTCATTCTCTTCTCTCTCT+CGG - chr3_4:71027266-71027285 Msa0519090:three_prime_UTR 40.0%
ATTAAGGCATGAAACTGCTC+CGG + chr3_4:71027330-71027349 None:intergenic 40.0%
ATGTTGAAGTTTCGACCGTT+AGG + chr3_4:71027405-71027424 None:intergenic 40.0%
!!! CGACAGCATTGAGTTGATTT+TGG + chr3_4:71027431-71027450 None:intergenic 40.0%
! TCTCCGTCCTAATTTTCTTG+AGG - chr3_4:71027548-71027567 Msa0519090:three_prime_UTR 40.0%
! CTCCGTCCTAATTTTCTTGA+GGG - chr3_4:71027549-71027568 Msa0519090:three_prime_UTR 40.0%
GAGTAGAAGAACCACTTAAC+AGG + chr3_4:71027675-71027694 None:intergenic 40.0%
GTTAAGTGGTTCTTCTACTC+AGG - chr3_4:71027675-71027694 Msa0519090:CDS 40.0%
CTCAAACGTCATTACATGAG+CGG + chr3_4:71028044-71028063 None:intergenic 40.0%
! CATGTAATGACGTTTGAGGT+TGG - chr3_4:71028046-71028065 Msa0519090:intron 40.0%
AGAATCCACTACTGTTCATG+AGG - chr3_4:71028138-71028157 Msa0519090:CDS 40.0%
!! GATTTTGGGAGTTTGATGAG+AGG - chr3_4:71028160-71028179 Msa0519090:CDS 40.0%
TATCAGGACAAGATCAAGAG+TGG - chr3_4:71028374-71028393 Msa0519090:CDS 40.0%
AAGACTAGAGGATGATTGGA+AGG - chr3_4:71028582-71028601 Msa0519090:exon 40.0%
GATGAAACTTAGAGCAGCCA+TGG - chr3_4:71027206-71027225 Msa0519090:three_prime_UTR 45.0%
TTGTTCTATTGCAGAGGCCA+TGG + chr3_4:71027226-71027245 None:intergenic 45.0%
TCTCTCGGCTTCATATTCGA+TGG - chr3_4:71027281-71027300 Msa0519090:three_prime_UTR 45.0%
! TCCTGCAGAAAGTGGACTTA+TGG - chr3_4:71027370-71027389 Msa0519090:three_prime_UTR 45.0%
ACCATAAGTCCACTTTCTGC+AGG + chr3_4:71027374-71027393 None:intergenic 45.0%
! AAGTGGACTTATGGTACGAC+TGG - chr3_4:71027379-71027398 Msa0519090:three_prime_UTR 45.0%
!! TTATGGTACGACTGGCCTAA+CGG - chr3_4:71027387-71027406 Msa0519090:three_prime_UTR 45.0%
! ATGGAGAGTGTAGATGAAGG+AGG + chr3_4:71027484-71027503 None:intergenic 45.0%
GGAGAATACCTACAGGAAAC+TGG + chr3_4:71027533-71027552 None:intergenic 45.0%
TTAGGACGGAGAATACCTAC+AGG + chr3_4:71027540-71027559 None:intergenic 45.0%
CGCCCTCAAGAAAATTAGGA+CGG + chr3_4:71027554-71027573 None:intergenic 45.0%
GTAGCGCCCTCAAGAAAATT+AGG + chr3_4:71027558-71027577 None:intergenic 45.0%
TCACTCGTAGACCTGTTAAG+TGG - chr3_4:71027661-71027680 Msa0519090:CDS 45.0%
GTGGTTCTTCTACTCAGGTT+TGG - chr3_4:71027680-71027699 Msa0519090:CDS 45.0%
CGCTCATGTAATGACGTTTG+AGG - chr3_4:71028042-71028061 Msa0519090:intron 45.0%
TATATAGGAGCCTGCCAATG+CGG + chr3_4:71028088-71028107 None:intergenic 45.0%
GGTTTGTGACTCTCGATATC+AGG - chr3_4:71028358-71028377 Msa0519090:CDS 45.0%
GATGAAACTTAGAGCAGCCA+TGG - chr3_4:71027206-71027225 Msa0519090:three_prime_UTR 45.0%
TTGTTCTATTGCAGAGGCCA+TGG + chr3_4:71027226-71027245 None:intergenic 45.0%
TCTCTCGGCTTCATATTCGA+TGG - chr3_4:71027281-71027300 Msa0519090:three_prime_UTR 45.0%
! TCCTGCAGAAAGTGGACTTA+TGG - chr3_4:71027370-71027389 Msa0519090:three_prime_UTR 45.0%
ACCATAAGTCCACTTTCTGC+AGG + chr3_4:71027374-71027393 None:intergenic 45.0%
! AAGTGGACTTATGGTACGAC+TGG - chr3_4:71027379-71027398 Msa0519090:three_prime_UTR 45.0%
!! TTATGGTACGACTGGCCTAA+CGG - chr3_4:71027387-71027406 Msa0519090:three_prime_UTR 45.0%
! ATGGAGAGTGTAGATGAAGG+AGG + chr3_4:71027484-71027503 None:intergenic 45.0%
GGAGAATACCTACAGGAAAC+TGG + chr3_4:71027533-71027552 None:intergenic 45.0%
TTAGGACGGAGAATACCTAC+AGG + chr3_4:71027540-71027559 None:intergenic 45.0%
CGCCCTCAAGAAAATTAGGA+CGG + chr3_4:71027554-71027573 None:intergenic 45.0%
GTAGCGCCCTCAAGAAAATT+AGG + chr3_4:71027558-71027577 None:intergenic 45.0%
TCACTCGTAGACCTGTTAAG+TGG - chr3_4:71027661-71027680 Msa0519090:CDS 45.0%
GTGGTTCTTCTACTCAGGTT+TGG - chr3_4:71027680-71027699 Msa0519090:CDS 45.0%
CGCTCATGTAATGACGTTTG+AGG - chr3_4:71028042-71028061 Msa0519090:intron 45.0%
TATATAGGAGCCTGCCAATG+CGG + chr3_4:71028088-71028107 None:intergenic 45.0%
GGTTTGTGACTCTCGATATC+AGG - chr3_4:71028358-71028377 Msa0519090:CDS 45.0%
TTCGATGGCTGAGCCAATTC+CGG - chr3_4:71027296-71027315 Msa0519090:three_prime_UTR 50.0%
TCGTCGTTTACGACCTCGAA+TGG - chr3_4:71027448-71027467 Msa0519090:three_prime_UTR 50.0%
TACGACCTCGAATGGACCAA+CGG - chr3_4:71027456-71027475 Msa0519090:three_prime_UTR 50.0%
!! GTAGATGAAGGAGGTACCGT+TGG + chr3_4:71027475-71027494 None:intergenic 50.0%
! GGGATGGAGAGTGTAGATGA+AGG + chr3_4:71027487-71027506 None:intergenic 50.0%
GAAACTGGACGACCTTGCAA+TGG + chr3_4:71027518-71027537 None:intergenic 50.0%
AAGGTCGTCCAGTTTCCTGT+AGG - chr3_4:71027522-71027541 Msa0519090:three_prime_UTR 50.0%
!! CTTGAGGGCGCTACGTATTT+AGG - chr3_4:71027564-71027583 Msa0519090:three_prime_UTR 50.0%
TTCGATGGCTGAGCCAATTC+CGG - chr3_4:71027296-71027315 Msa0519090:three_prime_UTR 50.0%
TCGTCGTTTACGACCTCGAA+TGG - chr3_4:71027448-71027467 Msa0519090:three_prime_UTR 50.0%
TACGACCTCGAATGGACCAA+CGG - chr3_4:71027456-71027475 Msa0519090:three_prime_UTR 50.0%
!! GTAGATGAAGGAGGTACCGT+TGG + chr3_4:71027475-71027494 None:intergenic 50.0%
! GGGATGGAGAGTGTAGATGA+AGG + chr3_4:71027487-71027506 None:intergenic 50.0%
GAAACTGGACGACCTTGCAA+TGG + chr3_4:71027518-71027537 None:intergenic 50.0%
AAGGTCGTCCAGTTTCCTGT+AGG - chr3_4:71027522-71027541 Msa0519090:three_prime_UTR 50.0%
!! CTTGAGGGCGCTACGTATTT+AGG - chr3_4:71027564-71027583 Msa0519090:three_prime_UTR 50.0%
CTGAGCCAATTCCGGCTGTT+TGG - chr3_4:71027304-71027323 Msa0519090:three_prime_UTR 55.0%
! AGGTACCGTTGGTCCATTCG+AGG + chr3_4:71027464-71027483 None:intergenic 55.0%
ACCTTGCAATGGCGGTCTGA+GGG + chr3_4:71027507-71027526 None:intergenic 55.0%
ACTGGACGACCTTGCAATGG+CGG + chr3_4:71027515-71027534 None:intergenic 55.0%
!! TGAGGTTGGAGCACTGCTTG+AGG - chr3_4:71028060-71028079 Msa0519090:intron 55.0%
CACTGCTTGAGGAACCGCAT+TGG - chr3_4:71028071-71028090 Msa0519090:intron 55.0%
CTGAGCCAATTCCGGCTGTT+TGG - chr3_4:71027304-71027323 Msa0519090:three_prime_UTR 55.0%
! AGGTACCGTTGGTCCATTCG+AGG + chr3_4:71027464-71027483 None:intergenic 55.0%
ACCTTGCAATGGCGGTCTGA+GGG + chr3_4:71027507-71027526 None:intergenic 55.0%
ACTGGACGACCTTGCAATGG+CGG + chr3_4:71027515-71027534 None:intergenic 55.0%
!! TGAGGTTGGAGCACTGCTTG+AGG - chr3_4:71028060-71028079 Msa0519090:intron 55.0%
CACTGCTTGAGGAACCGCAT+TGG - chr3_4:71028071-71028090 Msa0519090:intron 55.0%
GCCAATTCCGGCTGTTTGGC+CGG - chr3_4:71027308-71027327 Msa0519090:three_prime_UTR 60.0%
TCCGGCCAAACAGCCGGAAT+TGG + chr3_4:71027312-71027331 None:intergenic 60.0%
AACTGCTCCGGCCAAACAGC+CGG + chr3_4:71027318-71027337 None:intergenic 60.0%
GAGCGGAGTCCTGCAGAAAG+TGG - chr3_4:71027362-71027381 Msa0519090:three_prime_UTR 60.0%
TGCAATGGCGGTCTGAGGGA+TGG + chr3_4:71027503-71027522 None:intergenic 60.0%
TCCCTCAGACCGCCATTGCA+AGG - chr3_4:71027503-71027522 Msa0519090:three_prime_UTR 60.0%
GACCTTGCAATGGCGGTCTG+AGG + chr3_4:71027508-71027527 None:intergenic 60.0%
! GCTTGAGGAACCGCATTGGC+AGG - chr3_4:71028075-71028094 Msa0519090:intron 60.0%
GCCAATTCCGGCTGTTTGGC+CGG - chr3_4:71027308-71027327 Msa0519090:three_prime_UTR 60.0%
TCCGGCCAAACAGCCGGAAT+TGG + chr3_4:71027312-71027331 None:intergenic 60.0%
AACTGCTCCGGCCAAACAGC+CGG + chr3_4:71027318-71027337 None:intergenic 60.0%
GAGCGGAGTCCTGCAGAAAG+TGG - chr3_4:71027362-71027381 Msa0519090:three_prime_UTR 60.0%
TGCAATGGCGGTCTGAGGGA+TGG + chr3_4:71027503-71027522 None:intergenic 60.0%
TCCCTCAGACCGCCATTGCA+AGG - chr3_4:71027503-71027522 Msa0519090:three_prime_UTR 60.0%
GACCTTGCAATGGCGGTCTG+AGG + chr3_4:71027508-71027527 None:intergenic 60.0%
! GCTTGAGGAACCGCATTGGC+AGG - chr3_4:71028075-71028094 Msa0519090:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 71027154 71028652 71027154 ID=Msa0519090;Name=Msa0519090
chr3_4 mRNA 71027154 71028652 71027154 ID=Msa0519090-mRNA-1;Parent=Msa0519090;Name=Msa0519090-mRNA-1;_AED=0.34;_eAED=0.34;_QI=53|1|1|1|1|1|2|445|222
chr3_4 exon 71027154 71027777 71027154 ID=Msa0519090-mRNA-1:exon:19499;Parent=Msa0519090-mRNA-1
chr3_4 exon 71028110 71028652 71028110 ID=Msa0519090-mRNA-1:exon:19498;Parent=Msa0519090-mRNA-1
chr3_4 five_prime_UTR 71028600 71028652 71028600 ID=Msa0519090-mRNA-1:five_prime_utr;Parent=Msa0519090-mRNA-1
chr3_4 CDS 71028110 71028599 71028110 ID=Msa0519090-mRNA-1:cds;Parent=Msa0519090-mRNA-1
chr3_4 CDS 71027599 71027777 71027599 ID=Msa0519090-mRNA-1:cds;Parent=Msa0519090-mRNA-1
chr3_4 three_prime_UTR 71027154 71027598 71027154 ID=Msa0519090-mRNA-1:three_prime_utr;Parent=Msa0519090-mRNA-1
Gene Sequence

>Msa0519090

ATGAAACTTAGAGCAGCCATGGCCTCTGCAATAGAACAACTATCTAGGATATTCCTATATGTCATTCTCTTCTCTCTCTCGGCTTCATATTCGATGGCTGAGCCAATTCCGGCTGTTTGGCCGGAGCAGTTTCATGCCTTAATGTTTATGAACAAGAGCGGAGTCCTGCAGAAAGTGGACTTATGGTACGACTGGCCTAACGGTCGAAACTTCAACATCATCCAAAATCAACTCAATGCTGTCGTCGTTTACGACCTCGAATGGACCAACGGTACCTCCTTCATCTACACTCTCCATCCCTCAGACCGCCATTGCAAGGTCGTCCAGTTTCCTGTAGGTATTCTCCGTCCTAATTTTCTTGAGGGCGCTACGTATTTAGGTCAAGAACATGTTGATAATTTCCTTTGTAATGTTTGGACGAAAGTTGATTTCATTGTGTACTATGAAGATGTTCTCACTCGTAGACCTGTTAAGTGGTTCTTCTACTCAGATGGAGGATATACCGCTCATGTAATGACGTTTGAGGTTGGAGCACTGCTTGAGGAACCGCATTGGCAGGCTCCTATATACTGCTTCAATCAGACTGAGATAATAATAATAGAATCCACTACTGTTCATGAGGATTTTGGGAGTTTGATGAGAGGCAAAGTTGATGCTGCTGCTGCATAA

Protein sequence

>Msa0519090

MKLRAAMASAIEQLSRIFLYVILFSLSASYSMAEPIPAVWPEQFHALMFMNKSGVLQKVDLWYDWPNGRNFNIIQNQLNAVVVYDLEWTNGTSFIYTLHPSDRHCKVVQFPVGILRPNFLEGATYLGQEHVDNFLCNVWTKVDFIVYYEDVLTRRPVKWFFYSDGGYTAHVMTFEVGALLEEPHWQAPIYCFNQTEIIIIESTTVHEDFGSLMRGKVDAAAA*