AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1100450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1100450 MtrunA17_Chr7g0217131 95.669 254 11 0 28 281 1 254 3.34e-175 483
Msa1100450 MtrunA17_Chr5g0416421 50.602 249 108 4 32 277 7 243 1.76e-82 248
Msa1100450 MtrunA17_Chr1g0161591 33.466 251 126 4 34 276 33 250 2.99e-38 136
Msa1100450 MtrunA17_Chr7g0253621 34.959 246 140 6 34 272 5 237 4.88e-37 132
Msa1100450 MtrunA17_Chr8g0366351 33.333 255 132 5 34 279 5 230 1.00e-34 126
Msa1100450 MtrunA17_Chr5g0410831 34.766 256 127 7 34 279 5 230 3.93e-34 125
Msa1100450 MtrunA17_Chr8g0392141 32.794 247 134 5 34 276 33 251 1.53e-33 124
Msa1100450 MtrunA17_Chr5g0410821 36.434 129 67 3 155 279 1 118 7.83e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1100450 AT3G01210.2 53.516 256 111 3 28 282 1 249 2.47e-73 225
Msa1100450 AT3G01210.1 53.516 256 111 3 28 282 1 249 2.47e-73 225
Msa1100450 AT1G14340.1 45.935 246 120 2 32 277 6 238 6.24e-66 206
Msa1100450 AT5G16840.2 34.413 247 127 7 36 278 9 224 8.46e-37 132
Msa1100450 AT5G46870.2 33.465 254 139 6 34 279 5 236 1.51e-36 132
Msa1100450 AT5G46870.1 33.465 254 139 6 34 279 5 236 1.51e-36 132
Msa1100450 AT5G16840.1 33.603 247 128 7 36 278 9 223 4.60e-36 130
Msa1100450 AT5G16840.3 33.603 247 128 7 36 278 7 221 5.59e-36 129
Msa1100450 AT4G17720.1 32.685 257 133 5 34 279 5 232 1.30e-35 130
Msa1100450 AT5G32450.1 33.603 247 141 5 34 271 6 238 3.72e-34 125
Msa1100450 AT1G67950.1 33.198 247 131 6 31 272 27 244 9.44e-30 114
Msa1100450 AT1G67950.2 33.198 247 131 6 31 272 28 245 9.64e-30 114
Msa1100450 AT1G67950.3 33.198 247 132 7 31 272 27 245 1.48e-29 113
Msa1100450 AT1G67950.4 33.333 213 109 5 65 272 1 185 5.31e-24 97.1

Find 65 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCAATGCCTGAATTTA+TGG 0.074898 7_3:+30168624 None:intergenic
GTTTCAGGGATCGATGATTT+TGG 0.234637 7_3:-30169779 Msa1100450:intron
GCTGAACTCAGCAACAAAAT+TGG 0.265972 7_3:-30168658 Msa1100450:CDS
AGTTTATATTTGTATGTATT+GGG 0.280029 7_3:-30168180 Msa1100450:three_prime_UTR
CATCATTCTCTGTCGCTCTT+GGG 0.292251 7_3:+30171856 None:intergenic
TTTATGTAGGTTGTTGAATC+TGG 0.304615 7_3:-30171963 Msa1100450:intron
GGCGAAATCAGCCGCTGATT+TGG 0.309158 7_3:-30168413 Msa1100450:CDS
GTTATACTGTCTTCATGGTT+TGG 0.321389 7_3:+30169688 None:intergenic
ACTTCGCGAAAGGAGCTCTT+TGG 0.322549 7_3:-30168459 Msa1100450:CDS
AATGTTGATATCACTAGTTT+TGG 0.328741 7_3:-30168267 Msa1100450:three_prime_UTR
ACATCATTCTCTGTCGCTCT+TGG 0.337209 7_3:+30171855 None:intergenic
GAAAGGAGCTCTTTGGGTTT+CGG 0.346069 7_3:-30168452 Msa1100450:CDS
AAATCAGCTGTGACCGTAAC+GGG 0.347381 7_3:-30168559 Msa1100450:CDS
ACCGTATACGGCTACTTATC+TGG 0.357802 7_3:-30168294 Msa1100450:three_prime_UTR
GAGTTTATATTTGTATGTAT+TGG 0.360981 7_3:-30168181 Msa1100450:three_prime_UTR
CGTTACGGTCACAGCTGATT+TGG 0.364880 7_3:+30168561 None:intergenic
GCGAAATCAGCCGCTGATTT+GGG 0.367461 7_3:-30168412 Msa1100450:CDS
TCAGCAATAATGCAGTTTCC+AGG 0.367505 7_3:+30170700 None:intergenic
TTGACTGAAACCATAAATTC+AGG 0.369568 7_3:-30168634 Msa1100450:CDS
AAAACATACACTAAAATGTT+TGG 0.369742 7_3:-30168364 Msa1100450:three_prime_UTR
CTTCGCGAAAGGAGCTCTTT+GGG 0.373138 7_3:-30168458 Msa1100450:CDS
CTGATTGAAGATTCTGAAGA+TGG 0.375782 7_3:+30171929 None:intergenic
ATACAGATGACAGCAATAAC+TGG 0.385974 7_3:-30169723 Msa1100450:CDS
TGATACTGTATTACCGTATA+CGG 0.386674 7_3:-30168306 Msa1100450:three_prime_UTR
ATAGTTGCGGCAACAGTTAC+CGG 0.400255 7_3:-30168526 Msa1100450:CDS
ACCAGATAAGTAGCCGTATA+CGG 0.406295 7_3:+30168293 None:intergenic
CCCTGGAGAAGCACTGACTA+TGG 0.407984 7_3:-30168800 Msa1100450:CDS
AGTATGTTATACTGTCTTCA+TGG 0.433173 7_3:+30169683 None:intergenic
GCCATAGTCAGTGCTTCTCC+AGG 0.433235 7_3:+30168799 None:intergenic
AGCACTGACTATGGCCCAAC+AGG 0.435623 7_3:-30168791 Msa1100450:CDS
TTTCGCGAAGTAGCTGCTAT+TGG 0.444755 7_3:+30168471 None:intergenic
GACAAGTTTATTTCTTCCCC+TGG 0.448188 7_3:-30168817 Msa1100450:CDS
AATCCATGATGAGCAGCAAT+TGG 0.455021 7_3:-30168242 Msa1100450:three_prime_UTR
AGCAGCCATAGCTGCTCTCC+CGG 0.505893 7_3:+30168507 None:intergenic
GTCAAAACAATGGTAGCTAA+AGG 0.506039 7_3:-30168766 Msa1100450:CDS
AAACCAATTGCTGCTCATCA+TGG 0.508087 7_3:+30168239 None:intergenic
ATGCATTTCTATTTCACGCT+GGG 0.512664 7_3:-30169752 Msa1100450:CDS
ATCATTCTCTGTCGCTCTTG+GGG 0.518956 7_3:+30171857 None:intergenic
CATTGAAAGATTTAAATATG+TGG 0.523394 7_3:-30168611 Msa1100450:CDS
TATAGCTGTTGTCCCCGTTA+CGG 0.523895 7_3:+30168546 None:intergenic
TGCAGTAGACTCATAATCAC+TGG 0.524529 7_3:+30170749 None:intergenic
ACTGTATTATAAAATATGAC+TGG 0.530872 7_3:+30168087 None:intergenic
AGTTACCGGGAGAGCAGCTA+TGG 0.540397 7_3:-30168512 Msa1100450:CDS
TTGAACGTGTTGATGTGATA+AGG 0.555755 7_3:-30171803 Msa1100450:intron
ATCATCTACAGCAGCAAACA+AGG 0.563010 7_3:-30168683 Msa1100450:CDS
CAGCAATAATGCAGTTTCCA+GGG 0.565158 7_3:+30170701 None:intergenic
CAGTTAACAAATATGTATCC+CGG 0.572446 7_3:-30171909 Msa1100450:CDS
AGCGTGAAATAGAAATGCAT+TGG 0.573031 7_3:+30169755 None:intergenic
GATTTCAGCAGTATAGCCAC+CGG 0.578842 7_3:+30171890 None:intergenic
GGGAGAGCAGCTATGGCTGC+TGG 0.580006 7_3:-30168505 Msa1100450:CDS
CCATAGTCAGTGCTTCTCCA+GGG 0.584544 7_3:+30168800 None:intergenic
CAAATCAGCTGTGACCGTAA+CGG 0.593214 7_3:-30168560 Msa1100450:CDS
TTCGGATATGTTATCTCGTG+CGG 0.601464 7_3:-30168434 Msa1100450:CDS
AATAGCAGCTACTTCGCGAA+AGG 0.601571 7_3:-30168469 Msa1100450:CDS
TAGTTGCGGCAACAGTTACC+GGG 0.619088 7_3:-30168525 Msa1100450:CDS
AATGCATTTCTATTTCACGC+TGG 0.619462 7_3:-30169753 Msa1100450:CDS
CATAGTCAGTGCTTCTCCAG+GGG 0.633935 7_3:+30168801 None:intergenic
GAGCAAAGATGCATTTGTGA+TGG 0.651958 7_3:-30168734 Msa1100450:CDS
CCAACAGGTTGTCAAAACAA+TGG 0.652844 7_3:-30168776 Msa1100450:CDS
TCTTCGACAGGATATGCACA+TGG 0.669039 7_3:-30168839 Msa1100450:intron
ATTTCAGCAGTATAGCCACC+GGG 0.672279 7_3:+30171891 None:intergenic
AATCAGCTGTGACCGTAACG+GGG 0.690827 7_3:-30168558 Msa1100450:CDS
TTGATGATGACCCAAATCAG+CGG 0.695347 7_3:+30168402 None:intergenic
GGGGACAACAGCTATAGTTG+CGG 0.707278 7_3:-30168539 Msa1100450:CDS
TTAACAAATATGTATCCCGG+TGG 0.755255 7_3:-30171906 Msa1100450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAAAAAAAAATATTGTTT+TGG + chr7_3:30168151-30168170 None:intergenic 10.0%
!! AATAATTAATCATTTACTTA+AGG - chr7_3:30168959-30168978 Msa1100450:intron 10.0%
!!! AAAAAATGTGATTTTAATTA+AGG + chr7_3:30169195-30169214 None:intergenic 10.0%
!!! TAATATATTTTGTTAATGTA+CGG - chr7_3:30170110-30170129 Msa1100450:intron 10.0%
!! ATATTTCAAAAAAAAAACAA+AGG - chr7_3:30171100-30171119 Msa1100450:intron 10.0%
!! TATTTCAAAAAAAAAACAAA+GGG - chr7_3:30171101-30171120 Msa1100450:intron 10.0%
!!! AAAAAAAAATATTGTTTTGG+TGG + chr7_3:30168148-30168167 None:intergenic 15.0%
!!! AATATTTTATATCTTCAGAT+TGG - chr7_3:30168279-30168298 Msa1100450:three_prime_UTR 15.0%
!! ATTACTATATTTAATCACAT+TGG + chr7_3:30168559-30168578 None:intergenic 15.0%
!! ACTAATCCAAAAAAAAATAT+CGG + chr7_3:30168898-30168917 None:intergenic 15.0%
!!! ATGATATGTTTGATTTTAAT+TGG + chr7_3:30169057-30169076 None:intergenic 15.0%
!!! AGAATATCTCTTTTTATTTT+TGG - chr7_3:30169288-30169307 Msa1100450:intron 15.0%
!!! TTTACTTTTTAATATCACTT+TGG + chr7_3:30169345-30169364 None:intergenic 15.0%
!!! AAACATTAAATAATTTTGAC+TGG - chr7_3:30169362-30169381 Msa1100450:intron 15.0%
!!! ACTCAATTTTTATATTAGTT+CGG + chr7_3:30170089-30170108 None:intergenic 15.0%
!!! TTATAATAATTGATAGCAAA+GGG + chr7_3:30170272-30170291 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr7_3:30170512-30170531 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr7_3:30170511-30170530 Msa1100450:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr7_3:30170535-30170554 Msa1100450:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr7_3:30170642-30170661 Msa1100450:intron 15.0%
!! AATAATTATGCAAATTATTG+TGG - chr7_3:30170724-30170743 Msa1100450:CDS 15.0%
!! TTTAATAAATGTTGTATATG+TGG + chr7_3:30170775-30170794 None:intergenic 15.0%
!!! TGTGATTTTAATTAAGAAAA+TGG + chr7_3:30170998-30171017 None:intergenic 15.0%
!! AATATTGAAAATTGTGAAAA+AGG + chr7_3:30171298-30171317 None:intergenic 15.0%
!!! TTTTTTCTTAATAATGATAC+AGG - chr7_3:30173484-30173503 Msa1100450:intron 15.0%
!!! AAATTTATGTTTTGGAAAAT+TGG - chr7_3:30174801-30174820 Msa1100450:intron 15.0%
!!! CTCTAAAGTATTTAATATTA+TGG + chr7_3:30175050-30175069 None:intergenic 15.0%
!! CATTATGAAATTTAATTAAC+AGG + chr7_3:30175302-30175321 None:intergenic 15.0%
!! CTGTTAATTAAATTTCATAA+TGG - chr7_3:30175300-30175319 Msa1100450:intron 15.0%
!! AGTTTATATTTGTATGTATT+GGG - chr7_3:30176077-30176096 Msa1100450:intron 15.0%
!! AAGAAAATCTAGTAGTAAAA+CGG + chr7_3:30168410-30168429 None:intergenic 20.0%
!!! AAAAAAAAAACTTTGAGACT+AGG - chr7_3:30168827-30168846 Msa1100450:CDS 20.0%
!!! TATGTTTGATTTTAATTGGT+TGG + chr7_3:30169053-30169072 None:intergenic 20.0%
!! AAGGAAATGAAAACAATAAA+TGG + chr7_3:30169176-30169195 None:intergenic 20.0%
!!! AACATGTGTCATATTTTTAT+TGG - chr7_3:30169226-30169245 Msa1100450:intron 20.0%
!!! CAATCGATTTTTCTTTTAAA+AGG - chr7_3:30169435-30169454 Msa1100450:intron 20.0%
!!! TTTTAAAAGGAATCCAATTT+TGG - chr7_3:30169448-30169467 Msa1100450:intron 20.0%
!! TCTTAAAATAGTCTCTTTAT+CGG - chr7_3:30169473-30169492 Msa1100450:intron 20.0%
!!! ATCCACTTTATTTGATTTTT+TGG + chr7_3:30169553-30169572 None:intergenic 20.0%
!! ACATTATATATGTAAGTGTT+AGG - chr7_3:30169733-30169752 Msa1100450:CDS 20.0%
!! CATTATATATGTAAGTGTTA+GGG - chr7_3:30169734-30169753 Msa1100450:CDS 20.0%
!!! TTTGTCTTTTTAAAAAAACG+AGG + chr7_3:30169888-30169907 None:intergenic 20.0%
!! CATTAAGATTGTAATAAAGA+GGG + chr7_3:30170008-30170027 None:intergenic 20.0%
!! ACATTAAGATTGTAATAAAG+AGG + chr7_3:30170009-30170028 None:intergenic 20.0%
!!! CTTATAATAATTGATAGCAA+AGG + chr7_3:30170273-30170292 None:intergenic 20.0%
!! CATTTAATTAATGATATACG+TGG - chr7_3:30170313-30170332 Msa1100450:intron 20.0%
!! CATTCAATTAATAATGTATG+TGG + chr7_3:30170352-30170371 None:intergenic 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - chr7_3:30170478-30170497 Msa1100450:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr7_3:30170521-30170540 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr7_3:30170602-30170621 Msa1100450:intron 20.0%
!!! ATGTTAGATTTTAATTGGTT+GGG + chr7_3:30170858-30170877 None:intergenic 20.0%
!!! ATGAGATGTTAGATTTTAAT+TGG + chr7_3:30170863-30170882 None:intergenic 20.0%
!! TAAGAAAATGGAAACATAAA+TGG + chr7_3:30170986-30171005 None:intergenic 20.0%
!! AAACAATTAAGCTATGTTAT+TGG - chr7_3:30171619-30171638 Msa1100450:intron 20.0%
!! AACAATTAAGCTATGTTATT+GGG - chr7_3:30171620-30171639 Msa1100450:intron 20.0%
!! ATAGCTTATAAACATCATTT+AGG + chr7_3:30171731-30171750 None:intergenic 20.0%
!! AAACATTATGAACAAAAAGA+GGG + chr7_3:30172230-30172249 None:intergenic 20.0%
!!! ATAGTTTTTGAATTTGTTTC+TGG - chr7_3:30172597-30172616 Msa1100450:intron 20.0%
!! TGACAAAGTTTAATAATTAC+AGG - chr7_3:30173278-30173297 Msa1100450:intron 20.0%
!! GACAAAGTTTAATAATTACA+GGG - chr7_3:30173279-30173298 Msa1100450:intron 20.0%
!!! TCTATAAAGCATAAAAGTTT+TGG - chr7_3:30173692-30173711 Msa1100450:intron 20.0%
!! ATCTATTAACAAAATACAGT+CGG + chr7_3:30174260-30174279 None:intergenic 20.0%
!!! AATTCAATTCATCTTGATTT+TGG - chr7_3:30174446-30174465 Msa1100450:intron 20.0%
!!! GTCTTTTTTCTTTACATTTT+TGG - chr7_3:30174650-30174669 Msa1100450:intron 20.0%
!! TTGGATATATTCATAAATCA+TGG - chr7_3:30174669-30174688 Msa1100450:intron 20.0%
!!! TCAAATAACTTTAATTTCTG+TGG + chr7_3:30174755-30174774 None:intergenic 20.0%
!! ATAATTCAATGTTCAGAATA+AGG - chr7_3:30174777-30174796 Msa1100450:intron 20.0%
!! TAATTCAATGTTCAGAATAA+GGG - chr7_3:30174778-30174797 Msa1100450:intron 20.0%
!!! AATAAGGGAAATTTATGTTT+TGG - chr7_3:30174793-30174812 Msa1100450:intron 20.0%
!!! TTAAGTTGTTTATCCAAATA+AGG - chr7_3:30174912-30174931 Msa1100450:intron 20.0%
!!! TTCAAAATCTATTTTTACGT+TGG - chr7_3:30174948-30174967 Msa1100450:intron 20.0%
!! CATTGAAAGATTTAAATATG+TGG - chr7_3:30175646-30175665 Msa1100450:intron 20.0%
!!! AAACATTTTAGTGTATGTTT+TGG + chr7_3:30175894-30175913 None:intergenic 20.0%
!! AAAACATACACTAAAATGTT+TGG - chr7_3:30175893-30175912 Msa1100450:intron 20.0%
!! GAGTTTATATTTGTATGTAT+TGG - chr7_3:30176076-30176095 Msa1100450:intron 20.0%
!! ACTGTATTATAAAATATGAC+TGG + chr7_3:30176173-30176192 None:intergenic 20.0%
!!! TCTTTTCAATTTTGACTCTT+TGG - chr7_3:30168168-30168187 Msa1100450:three_prime_UTR 25.0%
!! TCTGAACGTGTAAAATATTT+TGG - chr7_3:30168306-30168325 Msa1100450:three_prime_UTR 25.0%
!! GTTAGTGTTAGTACTATTTT+AGG + chr7_3:30168358-30168377 None:intergenic 25.0%
! AAAGTTCCATAATCTTAGTT+CGG - chr7_3:30168622-30168641 Msa1100450:CDS 25.0%
! TGTACAATATATACATGTGT+TGG - chr7_3:30168658-30168677 Msa1100450:CDS 25.0%
! TCATGACAAAAAAAATGTGT+TGG - chr7_3:30168718-30168737 Msa1100450:CDS 25.0%
! CATGACAAAAAAAATGTGTT+GGG - chr7_3:30168719-30168738 Msa1100450:CDS 25.0%
!!! TTTTTGTTGGTTAAAGAAAG+TGG + chr7_3:30169143-30169162 None:intergenic 25.0%
! GAAATGAAAACAATAAATGG+TGG + chr7_3:30169173-30169192 None:intergenic 25.0%
!!! TGTGTCATATTTTTATTGGT+TGG - chr7_3:30169230-30169249 Msa1100450:intron 25.0%
!!! GTGTCATATTTTTATTGGTT+GGG - chr7_3:30169231-30169250 Msa1100450:intron 25.0%
!!! CTATTTTAAGAAGCCAAAAT+TGG + chr7_3:30169464-30169483 None:intergenic 25.0%
! CTTAAAATAGTCTCTTTATC+GGG - chr7_3:30169474-30169493 Msa1100450:intron 25.0%
! GACCAAAAAATCAAATAAAG+TGG - chr7_3:30169548-30169567 Msa1100450:intron 25.0%
! ACACTTACATATATAATGTG+AGG + chr7_3:30169732-30169751 None:intergenic 25.0%
!!! ATGTGAATTTTTAGTCATGA+AGG - chr7_3:30169792-30169811 Msa1100450:intron 25.0%
!!! AATAATTTGTTTGGTGATGT+TGG + chr7_3:30169984-30170003 None:intergenic 25.0%
!!! AAAGAGGGAAATAATTTGTT+TGG + chr7_3:30169993-30170012 None:intergenic 25.0%
! ACTCAAATAAACATACACAA+TGG + chr7_3:30170053-30170072 None:intergenic 25.0%
!! AATTTGCTTATAATTAGCGA+CGG - chr7_3:30170386-30170405 Msa1100450:intron 25.0%
! AAGAAACAAGAGAAATTCTT+AGG - chr7_3:30170802-30170821 Msa1100450:intron 25.0%
!!! GATGTTAGATTTTAATTGGT+TGG + chr7_3:30170859-30170878 None:intergenic 25.0%
!!! AACGTGTCTCATTTTTTTAT+TGG - chr7_3:30171035-30171054 Msa1100450:intron 25.0%
! TATGGTATGGTTATGATTAT+GGG + chr7_3:30171166-30171185 None:intergenic 25.0%
! TTATGGTATGGTTATGATTA+TGG + chr7_3:30171167-30171186 None:intergenic 25.0%
! AACCATACCATAATTGATAT+AGG - chr7_3:30171174-30171193 Msa1100450:intron 25.0%
! ATATTGCTTCACTATTTCAA+AGG - chr7_3:30171313-30171332 Msa1100450:intron 25.0%
!!! CATACTTTGTTTTTTCATCT+TGG - chr7_3:30171338-30171357 Msa1100450:intron 25.0%
! ACAATTAAGCTATGTTATTG+GGG - chr7_3:30171621-30171640 Msa1100450:intron 25.0%
!! TCATTTTCTCAAATTATTGC+CGG + chr7_3:30171958-30171977 None:intergenic 25.0%
! ATTGAATATAACCTATGTGT+TGG - chr7_3:30171983-30172002 Msa1100450:intron 25.0%
! GAAACATTATGAACAAAAAG+AGG + chr7_3:30172231-30172250 None:intergenic 25.0%
! TAAGAAAGCAAGTCAAAATT+TGG + chr7_3:30172253-30172272 None:intergenic 25.0%
!!! ATACTTGTTTTGCTTTATGT+AGG - chr7_3:30172281-30172300 Msa1100450:intron 25.0%
! GGTTACTTAACATTGTTTAT+TGG - chr7_3:30172480-30172499 Msa1100450:intron 25.0%
!! AGTCAAAATGAAACTTTTTG+TGG - chr7_3:30172516-30172535 Msa1100450:intron 25.0%
!! TCTGGTTTATGATTACATAT+TGG - chr7_3:30172615-30172634 Msa1100450:intron 25.0%
!! ATTGTTGCTTAGATAGTTAA+TGG - chr7_3:30172642-30172661 Msa1100450:intron 25.0%
! TAATGAAACACCTGAAATTA+TGG + chr7_3:30172820-30172839 None:intergenic 25.0%
!! AATTTTTGTAGCCATGAATT+TGG + chr7_3:30172883-30172902 None:intergenic 25.0%
! TGGCTACAAAAATTACATTA+AGG - chr7_3:30172889-30172908 Msa1100450:intron 25.0%
! GGCTACAAAAATTACATTAA+GGG - chr7_3:30172890-30172909 Msa1100450:intron 25.0%
! ATATGGTTAATAGATATACC+AGG + chr7_3:30172932-30172951 None:intergenic 25.0%
!! TGTATTATTTCTCCTAATAG+TGG - chr7_3:30173147-30173166 Msa1100450:intron 25.0%
! AAATGATCTTTACCACTATT+AGG + chr7_3:30173162-30173181 None:intergenic 25.0%
! CTTACAAAAACTGACTATTA+TGG + chr7_3:30173220-30173239 None:intergenic 25.0%
! TTCCAAATATAACTCTACAA+TGG - chr7_3:30174333-30174352 Msa1100450:intron 25.0%
! ATCCATTGTAGAGTTATATT+TGG + chr7_3:30174338-30174357 None:intergenic 25.0%
! AAATTTAATTAACAGGCCTA+AGG + chr7_3:30175295-30175314 None:intergenic 25.0%
! AGCAAAAAACTACAATTGTT+TGG - chr7_3:30175928-30175947 Msa1100450:intron 25.0%
!!! AATGTTGATATCACTAGTTT+TGG - chr7_3:30175990-30176009 Msa1100450:intron 25.0%
! AAGTATGCATTTTAGACTCT+CGG - chr7_3:30168212-30168231 Msa1100450:three_prime_UTR 30.0%
AAAATCTAGTAGTAAAACGG+TGG + chr7_3:30168407-30168426 None:intergenic 30.0%
! AGTAGATGCCAAAATTTTGT+CGG + chr7_3:30168438-30168457 None:intergenic 30.0%
TATCAACCGAACTAAGATTA+TGG + chr7_3:30168631-30168650 None:intergenic 30.0%
!!! GCTACACCGATATTTTTTTT+TGG - chr7_3:30168889-30168908 Msa1100450:intron 30.0%
! TTTTCTCGATACACAATAGT+CGG - chr7_3:30168930-30168949 Msa1100450:intron 30.0%
TGGTTAAAGAAAGTGGAAAA+AGG + chr7_3:30169136-30169155 None:intergenic 30.0%
TGAAAACAATAAATGGTGGT+GGG + chr7_3:30169169-30169188 None:intergenic 30.0%
ATGAAAACAATAAATGGTGG+TGG + chr7_3:30169170-30169189 None:intergenic 30.0%
ACTCTTCTCAATGTCAATTT+CGG + chr7_3:30169919-30169938 None:intergenic 30.0%
GTCATACTCATTAATTAACG+TGG + chr7_3:30170167-30170186 None:intergenic 30.0%
GATATACGTGGTTCATAATA+TGG - chr7_3:30170325-30170344 Msa1100450:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr7_3:30170430-30170449 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr7_3:30170431-30170450 Msa1100450:intron 30.0%
ATATGTGGATCATTCTGATT+GGG + chr7_3:30170760-30170779 None:intergenic 30.0%
TATATGTGGATCATTCTGAT+TGG + chr7_3:30170761-30170780 None:intergenic 30.0%
GAAAATGGAAACATAAATGG+TGG + chr7_3:30170983-30171002 None:intergenic 30.0%
TGAGTGTAAAAATGATGTGT+TGG - chr7_3:30171059-30171078 Msa1100450:intron 30.0%
GAGTGTAAAAATGATGTGTT+GGG - chr7_3:30171060-30171079 Msa1100450:intron 30.0%
! TTGTATTTGAAGTGAAACAG+AGG + chr7_3:30171253-30171272 None:intergenic 30.0%
ATCAAAGACATATGCATGAT+TGG + chr7_3:30171531-30171550 None:intergenic 30.0%
ACTGATGCTTATTTGTGTTA+TGG - chr7_3:30171801-30171820 Msa1100450:intron 30.0%
ATCGGATACTGATAGTTAAA+AGG + chr7_3:30172180-30172199 None:intergenic 30.0%
AAGGAACGTTAATGTTACAT+CGG + chr7_3:30172198-30172217 None:intergenic 30.0%
TTTATGTAGGTTGTTGAATC+TGG - chr7_3:30172294-30172313 Msa1100450:intron 30.0%
CAGTTAACAAATATGTATCC+CGG - chr7_3:30172348-30172367 Msa1100450:intron 30.0%
!!! CAGAACTTTTTTGAATACTG+TGG - chr7_3:30172426-30172445 Msa1100450:intron 30.0%
! AAATGAAACTTTTTGTGGCT+AGG - chr7_3:30172521-30172540 Msa1100450:intron 30.0%
ACTCTTGAGTTTAATGTCAA+AGG - chr7_3:30172548-30172567 Msa1100450:intron 30.0%
TATTAATGAGTTTCAACACC+TGG + chr7_3:30172673-30172692 None:intergenic 30.0%
AACTTCATTAACCACGAATT+TGG - chr7_3:30172701-30172720 Msa1100450:intron 30.0%
TTGTATGCAGTTCAAATATG+TGG + chr7_3:30172760-30172779 None:intergenic 30.0%
AACTTCATTAACCACAACTT+TGG - chr7_3:30172784-30172803 Msa1100450:intron 30.0%
ACATGGATAACCATAATTTC+AGG - chr7_3:30172807-30172826 Msa1100450:intron 30.0%
ATTTGAACACCTGAAAATTG+TGG - chr7_3:30172847-30172866 Msa1100450:intron 30.0%
! TGTCATAAACCACAATTTTC+AGG + chr7_3:30172859-30172878 None:intergenic 30.0%
GTTTATGACATCCAAATTCA+TGG - chr7_3:30172869-30172888 Msa1100450:intron 30.0%
GTTAACGAAGTTCAAATAAG+TGG + chr7_3:30172970-30172989 None:intergenic 30.0%
TTCAACGGAGATATGAAATA+TGG + chr7_3:30173354-30173373 None:intergenic 30.0%
CATGCAATCTTTCTATTCAA+CGG + chr7_3:30173369-30173388 None:intergenic 30.0%
CATGTTGTAACTTTGTAAGT+TGG - chr7_3:30173385-30173404 Msa1100450:intron 30.0%
! TTGTAACTTTGTAAGTTGGA+GGG - chr7_3:30173389-30173408 Msa1100450:intron 30.0%
AACTAACAGTTCTACCATAT+AGG + chr7_3:30173415-30173434 None:intergenic 30.0%
TAGTATATGTGAAGAGTTCT+TGG - chr7_3:30173442-30173461 Msa1100450:intron 30.0%
! TACTGCATATGTGACTTTTA+GGG - chr7_3:30173524-30173543 Msa1100450:intron 30.0%
! AAGGCTTTTATCATCTTTGT+TGG - chr7_3:30173584-30173603 Msa1100450:intron 30.0%
ATCATCTTTGTTGGATATCA+TGG - chr7_3:30173593-30173612 Msa1100450:intron 30.0%
ATTGAAAGTTGACAAGAACA+AGG + chr7_3:30173643-30173662 None:intergenic 30.0%
!!! CATAAAAGTTTTGGTGTTGT+GGG - chr7_3:30173701-30173720 Msa1100450:intron 30.0%
!!! TTTACTTTTTGATCCAAACG+TGG - chr7_3:30173908-30173927 Msa1100450:intron 30.0%
ATATAGTTGCATGAGTATGT+TGG - chr7_3:30173981-30174000 Msa1100450:intron 30.0%
!!! AAATACCATTGGTTTTGAGT+AGG - chr7_3:30174091-30174110 Msa1100450:intron 30.0%
ATAATGATAGACAGCTTCAT+TGG - chr7_3:30174300-30174319 Msa1100450:intron 30.0%
TAATGATAGACAGCTTCATT+GGG - chr7_3:30174301-30174320 Msa1100450:intron 30.0%
CAAGATGAATTGAATTGAAC+AGG + chr7_3:30174442-30174461 None:intergenic 30.0%
AGTATGTTATACTGTCTTCA+TGG + chr7_3:30174577-30174596 None:intergenic 30.0%
GTATAACATACTCACAAGTA+TGG - chr7_3:30174585-30174604 Msa1100450:intron 30.0%
!! ATAAGTAAGAGAGCATTCTA+AGG + chr7_3:30174622-30174641 None:intergenic 30.0%
!! ACAATTGACTAAGCCTTATT+TGG + chr7_3:30174928-30174947 None:intergenic 30.0%
TGTAAGGTTAGATTGTGATT+AGG + chr7_3:30175143-30175162 None:intergenic 30.0%
AGATGACAAAGAAACCTTAT+GGG - chr7_3:30175197-30175216 Msa1100450:intron 30.0%
CGATCGTTATTAACAGTTAT+AGG - chr7_3:30175244-30175263 Msa1100450:intron 30.0%
!!! AACATGTTTTTTTCTTCGAC+AGG - chr7_3:30175406-30175425 Msa1100450:intron 30.0%
TTGACTGAAACCATAAATTC+AGG - chr7_3:30175623-30175642 Msa1100450:intron 30.0%
TCTTTCAATGCCTGAATTTA+TGG + chr7_3:30175636-30175655 None:intergenic 30.0%
TGATACTGTATTACCGTATA+CGG - chr7_3:30175951-30175970 Msa1100450:intron 30.0%
GAGAAAAAAGAAGCTCTCTT+TGG + chr7_3:30168112-30168131 None:intergenic 35.0%
! CTTTGCTTCCGACAAAATTT+TGG - chr7_3:30168427-30168446 Msa1100450:CDS 35.0%
GGAGATTTCTTGAATTGGAT+TGG + chr7_3:30168471-30168490 None:intergenic 35.0%
AGCGAAATTTATTCGTTCCT+GGG + chr7_3:30168497-30168516 None:intergenic 35.0%
AAGCGAAATTTATTCGTTCC+TGG + chr7_3:30168498-30168517 None:intergenic 35.0%
GGAACGAATAAATTTCGCTT+TGG - chr7_3:30168498-30168517 Msa1100450:CDS 35.0%
GGTTGTAAGAATGATCTCTT+AGG + chr7_3:30169032-30169051 None:intergenic 35.0%
GGGTGTAAGAATAATCTCTT+AGG - chr7_3:30169251-30169270 Msa1100450:intron 35.0%
TTCTCAATGTCAATTTCGGT+GGG + chr7_3:30169915-30169934 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr7_3:30170560-30170579 Msa1100450:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr7_3:30170668-30170687 Msa1100450:intron 35.0%
CGGTTAAAGAAAGTGGAAAA+AGG + chr7_3:30170946-30170965 None:intergenic 35.0%
! TTCTTGTCGGTTAAAGAAAG+TGG + chr7_3:30170953-30170972 None:intergenic 35.0%
ATGGAAACATAAATGGTGGT+GGG + chr7_3:30170979-30170998 None:intergenic 35.0%
AATGGAAACATAAATGGTGG+TGG + chr7_3:30170980-30170999 None:intergenic 35.0%
GGCCTATATCAATTATGGTA+TGG + chr7_3:30171179-30171198 None:intergenic 35.0%
ATAGGGGCCTATATCAATTA+TGG + chr7_3:30171184-30171203 None:intergenic 35.0%
TATTGTCTGTCTCTTACTTC+TGG - chr7_3:30171393-30171412 Msa1100450:intron 35.0%
ATGAAACAATCGTGTAGATG+TGG - chr7_3:30171896-30171915 Msa1100450:CDS 35.0%
TCGATCCTTCACTATAATGT+TGG - chr7_3:30172075-30172094 Msa1100450:intron 35.0%
AGAGACCAACATTATAGTGA+AGG + chr7_3:30172083-30172102 None:intergenic 35.0%
! CTGATTGAAGATTCTGAAGA+TGG + chr7_3:30172331-30172350 None:intergenic 35.0%
TTAACAAATATGTATCCCGG+TGG - chr7_3:30172351-30172370 Msa1100450:intron 35.0%
! TTGAACGTGTTGATGTGATA+AGG - chr7_3:30172454-30172473 Msa1100450:intron 35.0%
! AGATAGTTAATGGATACACC+AGG - chr7_3:30172652-30172671 Msa1100450:intron 35.0%
ATTAACCACGAATTTGGACT+TGG - chr7_3:30172707-30172726 Msa1100450:intron 35.0%
ATTAACCACAACTTTGGACA+TGG - chr7_3:30172790-30172809 Msa1100450:intron 35.0%
ATATACCAGGTCTCAAAACT+CGG + chr7_3:30172919-30172938 None:intergenic 35.0%
GGTTGATTGCATTCAGTATA+TGG + chr7_3:30172949-30172968 None:intergenic 35.0%
GGAGATATGAAATATGGTCA+AGG + chr7_3:30173348-30173367 None:intergenic 35.0%
! GTTGTAACTTTGTAAGTTGG+AGG - chr7_3:30173388-30173407 Msa1100450:intron 35.0%
! CTACTGCATATGTGACTTTT+AGG - chr7_3:30173523-30173542 Msa1100450:intron 35.0%
CTGCATTATTGCTGAATGTA+AGG - chr7_3:30173565-30173584 Msa1100450:intron 35.0%
!!! GCATAAAAGTTTTGGTGTTG+TGG - chr7_3:30173700-30173719 Msa1100450:intron 35.0%
ATCACAAACTGTATGTACCA+TGG + chr7_3:30173829-30173848 None:intergenic 35.0%
! TTTTGGTCCAATTCTGTTTC+AGG - chr7_3:30174463-30174482 Msa1100450:intron 35.0%
TTTGGTCCAATTCTGTTTCA+GGG - chr7_3:30174464-30174483 Msa1100450:intron 35.0%
AGCGTGAAATAGAAATGCAT+TGG + chr7_3:30174505-30174524 None:intergenic 35.0%
AATGCATTTCTATTTCACGC+TGG - chr7_3:30174504-30174523 Msa1100450:intron 35.0%
ATGCATTTCTATTTCACGCT+GGG - chr7_3:30174505-30174524 Msa1100450:intron 35.0%
ATACAGATGACAGCAATAAC+TGG - chr7_3:30174534-30174553 Msa1100450:intron 35.0%
GTTATACTGTCTTCATGGTT+TGG + chr7_3:30174572-30174591 None:intergenic 35.0%
TTGGAAAGTCATAAATCTCC+AGG - chr7_3:30174820-30174839 Msa1100450:intron 35.0%
!! CTACTTTTCATAAGCTATCC+TGG + chr7_3:30174841-30174860 None:intergenic 35.0%
AAACATACCTTCTTCCATGA+TGG - chr7_3:30175094-30175113 Msa1100450:intron 35.0%
TGAGAAAGAACGAACATGTA+AGG + chr7_3:30175159-30175178 None:intergenic 35.0%
TGTCATCTGTCATCAATAAC+AGG + chr7_3:30175185-30175204 None:intergenic 35.0%
CAGATGACAAAGAAACCTTA+TGG - chr7_3:30175196-30175215 Msa1100450:intron 35.0%
ACTGTTAATAACGATCGAAC+AGG + chr7_3:30175241-30175260 None:intergenic 35.0%
ACTTCTGACACTAAATCCTT+AGG - chr7_3:30175276-30175295 Msa1100450:intron 35.0%
!!! CATTGTTTTGACAACCTGTT+GGG + chr7_3:30175483-30175502 None:intergenic 35.0%
GTCAAAACAATGGTAGCTAA+AGG - chr7_3:30175491-30175510 Msa1100450:intron 35.0%
TTTGGCATCTACTAGATTCC+TGG - chr7_3:30168445-30168464 Msa1100450:CDS 40.0%
!! TTTCTTGAATTGGATTGGCC+AGG + chr7_3:30168466-30168485 None:intergenic 40.0%
GGGATGGAGATTTCTTGAAT+TGG + chr7_3:30168476-30168495 None:intergenic 40.0%
AATTTATTCGTTCCTGGGGA+TGG + chr7_3:30168492-30168511 None:intergenic 40.0%
GCGAAATTTATTCGTTCCTG+GGG + chr7_3:30168496-30168515 None:intergenic 40.0%
!! AAACAATAAATGGTGGTGGG+TGG + chr7_3:30169166-30169185 None:intergenic 40.0%
! ATGTGAGGTATCTACCATCT+GGG + chr7_3:30169717-30169736 None:intergenic 40.0%
! AATGTGAGGTATCTACCATC+TGG + chr7_3:30169718-30169737 None:intergenic 40.0%
CTTCTCAATGTCAATTTCGG+TGG + chr7_3:30169916-30169935 None:intergenic 40.0%
!! TGTTTGGTGATGTTGGCTTA+AGG + chr7_3:30169977-30169996 None:intergenic 40.0%
TTGCTTATAATTAGCGACGG+AGG - chr7_3:30170389-30170408 Msa1100450:intron 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr7_3:30170563-30170582 Msa1100450:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr7_3:30170672-30170691 Msa1100450:intron 40.0%
GGGTGTAAGAATGATGTGTT+GGG + chr7_3:30170838-30170857 None:intergenic 40.0%
TGGGTGTAAGAATGATGTGT+TGG + chr7_3:30170839-30170858 None:intergenic 40.0%
AGGAGAAGAGAAACAGAGAA+GGG + chr7_3:30171233-30171252 None:intergenic 40.0%
TTGGGGACATCAATGTGTTT+AGG - chr7_3:30171638-30171657 Msa1100450:intron 40.0%
TGCATAACTGTCAAGTGTCA+TGG + chr7_3:30171929-30171948 None:intergenic 40.0%
ACACCTTCAACTTGAAGTGT+CGG - chr7_3:30172030-30172049 Msa1100450:intron 40.0%
TCACAGATGGAGCAATCATA+GGG - chr7_3:30172139-30172158 Msa1100450:intron 40.0%
GTAACATTAACGTTCCTTGC+AGG - chr7_3:30172200-30172219 Msa1100450:intron 40.0%
! CGTGTTGATGTGATAAGGTA+AGG - chr7_3:30172459-30172478 Msa1100450:intron 40.0%
GTTAACCAAGTCCAAATTCG+TGG + chr7_3:30172715-30172734 None:intergenic 40.0%
GTTATCCATGTCCAAAGTTG+TGG + chr7_3:30172798-30172817 None:intergenic 40.0%
TGCAGTAGACTCATAATCAC+TGG + chr7_3:30173511-30173530 None:intergenic 40.0%
CAGCAATAATGCAGTTTCCA+GGG + chr7_3:30173559-30173578 None:intergenic 40.0%
TCAGCAATAATGCAGTTTCC+AGG + chr7_3:30173560-30173579 None:intergenic 40.0%
GCATGTCTATTTCAATGCCA+TGG - chr7_3:30173809-30173828 Msa1100450:intron 40.0%
AGTTGCATGAGTATGTTGGT+AGG - chr7_3:30173985-30174004 Msa1100450:intron 40.0%
GTTGCATGAGTATGTTGGTA+GGG - chr7_3:30173986-30174005 Msa1100450:intron 40.0%
AAGCTACGTGTATGACTTGA+GGG + chr7_3:30174034-30174053 None:intergenic 40.0%
AAAGCTACGTGTATGACTTG+AGG + chr7_3:30174035-30174054 None:intergenic 40.0%
!!! CATACACGTAGCTTTTTCAG+AGG - chr7_3:30174040-30174059 Msa1100450:intron 40.0%
!! GCAAGAGAGTAGTGTTTTAG+CGG - chr7_3:30174067-30174086 Msa1100450:intron 40.0%
!!! CAAGAGAGTAGTGTTTTAGC+GGG - chr7_3:30174068-30174087 Msa1100450:intron 40.0%
!! GTTTTAGCGGGAAATACCAT+TGG - chr7_3:30174080-30174099 Msa1100450:intron 40.0%
AGTATACTTCCCTAAGCGTA+CGG + chr7_3:30174177-30174196 None:intergenic 40.0%
TTTCTTCATCAACGCTGTTC+TGG + chr7_3:30174237-30174256 None:intergenic 40.0%
ATCGATCCCTGAAACAGAAT+TGG + chr7_3:30174473-30174492 None:intergenic 40.0%
! GTTTCAGGGATCGATGATTT+TGG - chr7_3:30174478-30174497 Msa1100450:intron 40.0%
!! GTAAGAGAGCATTCTAAGGA+AGG + chr7_3:30174618-30174637 None:intergenic 40.0%
!!! TTACGTTGGCCTTTTGTAGT+TGG - chr7_3:30174962-30174981 Msa1100450:intron 40.0%
GTACACAAGCCAACTACAAA+AGG + chr7_3:30174974-30174993 None:intergenic 40.0%
ACTTCTACTCTCTACCATCA+TGG + chr7_3:30175111-30175130 None:intergenic 40.0%
!! ATGACTTTAGCTCTCCCATA+AGG + chr7_3:30175214-30175233 None:intergenic 40.0%
! GACAAGTTTATTTCTTCCCC+TGG - chr7_3:30175440-30175459 Msa1100450:intron 40.0%
!!! CCATTGTTTTGACAACCTGT+TGG + chr7_3:30175484-30175503 None:intergenic 40.0%
CCAACAGGTTGTCAAAACAA+TGG - chr7_3:30175481-30175500 Msa1100450:intron 40.0%
GAGCAAAGATGCATTTGTGA+TGG - chr7_3:30175523-30175542 Msa1100450:intron 40.0%
ATCATCTACAGCAGCAAACA+AGG - chr7_3:30175574-30175593 Msa1100450:intron 40.0%
GCTGAACTCAGCAACAAAAT+TGG - chr7_3:30175599-30175618 Msa1100450:intron 40.0%
TTCGGATATGTTATCTCGTG+CGG - chr7_3:30175823-30175842 Msa1100450:intron 40.0%
!! TTGATGATGACCCAAATCAG+CGG + chr7_3:30175858-30175877 None:intergenic 40.0%
ACCAGATAAGTAGCCGTATA+CGG + chr7_3:30175967-30175986 None:intergenic 40.0%
AATCCATGATGAGCAGCAAT+TGG - chr7_3:30176015-30176034 Msa1100450:intron 40.0%
AAACCAATTGCTGCTCATCA+TGG + chr7_3:30176021-30176040 None:intergenic 40.0%
TTCAAGAAATCTCCATCCCC+AGG - chr7_3:30168477-30168496 Msa1100450:CDS 45.0%
TGTCATGAGCTTAGCTCAGT+TGG + chr7_3:30168706-30168725 None:intergenic 45.0%
TTGAAAAGAACGTCCCCAGA+TGG - chr7_3:30169700-30169719 Msa1100450:CDS 45.0%
! TGTGAGGTATCTACCATCTG+GGG + chr7_3:30169716-30169735 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr7_3:30170671-30170690 Msa1100450:intron 45.0%
TGTGGATCATTCTGATTGGG+AGG + chr7_3:30170757-30170776 None:intergenic 45.0%
!! GAAACATAAATGGTGGTGGG+TGG + chr7_3:30170976-30170995 None:intergenic 45.0%
ATATAGGCCCCTATCTCTTG+TGG - chr7_3:30171190-30171209 Msa1100450:intron 45.0%
TGTGTGACCACAAGAGATAG+GGG + chr7_3:30171200-30171219 None:intergenic 45.0%
GTGTGTGACCACAAGAGATA+GGG + chr7_3:30171201-30171220 None:intergenic 45.0%
AGTGTGTGACCACAAGAGAT+AGG + chr7_3:30171202-30171221 None:intergenic 45.0%
GAGGAGAAGAGAAACAGAGA+AGG + chr7_3:30171234-30171253 None:intergenic 45.0%
TGACAGTTATGCAGAGACAC+CGG - chr7_3:30171936-30171955 Msa1100450:CDS 45.0%
!! TATGTGTTGGTGCCAAACAC+CGG - chr7_3:30171996-30172015 Msa1100450:intron 45.0%
TGATTGCTCCATCTGTGAGA+CGG + chr7_3:30172137-30172156 None:intergenic 45.0%
CTCACAGATGGAGCAATCAT+AGG - chr7_3:30172138-30172157 Msa1100450:intron 45.0%
AAAAAGAGGGTGATCCTGCA+AGG + chr7_3:30172217-30172236 None:intergenic 45.0%
ATTTCAGCAGTATAGCCACC+GGG + chr7_3:30172369-30172388 None:intergenic 45.0%
GATTTCAGCAGTATAGCCAC+CGG + chr7_3:30172370-30172389 None:intergenic 45.0%
ATCATTCTCTGTCGCTCTTG+GGG + chr7_3:30172403-30172422 None:intergenic 45.0%
CATCATTCTCTGTCGCTCTT+GGG + chr7_3:30172404-30172423 None:intergenic 45.0%
ACATCATTCTCTGTCGCTCT+TGG + chr7_3:30172405-30172424 None:intergenic 45.0%
! TGTAAGTTGGAGGGCCTATA+TGG - chr7_3:30173398-30173417 Msa1100450:intron 45.0%
!! TTTTAGGGATGCTTATGCCC+TGG - chr7_3:30173539-30173558 Msa1100450:intron 45.0%
TGTTCGACACACCAGTGTTA+TGG - chr7_3:30173756-30173775 Msa1100450:intron 45.0%
CGACTTGATACAACACGACA+CGG + chr7_3:30173790-30173809 None:intergenic 45.0%
GAGTAGAAGACGTGTGTGTT+AGG - chr7_3:30173954-30173973 Msa1100450:intron 45.0%
TAGAAGACGTGTGTGTTAGG+CGG - chr7_3:30173957-30173976 Msa1100450:intron 45.0%
CTCTGCCTACTCAAAACCAA+TGG + chr7_3:30174099-30174118 None:intergenic 45.0%
AGGCAGAGTCGATGATGATA+TGG - chr7_3:30174111-30174130 Msa1100450:intron 45.0%
TGATTGCGAATTACCTGGTC+AGG - chr7_3:30174136-30174155 Msa1100450:intron 45.0%
GAAGTCACTTAATCCTGACC+AGG + chr7_3:30174152-30174171 None:intergenic 45.0%
ACCTATGATTGCCCCTGATT+GGG - chr7_3:30174199-30174218 Msa1100450:intron 45.0%
AAGAAGCGACGAATCAAGAC+AGG + chr7_3:30174998-30175017 None:intergenic 45.0%
CTCTCTACCATCATGGAAGA+AGG + chr7_3:30175104-30175123 None:intergenic 45.0%
TCTTCGACAGGATATGCACA+TGG - chr7_3:30175418-30175437 Msa1100450:intron 45.0%
CAAATCAGCTGTGACCGTAA+CGG - chr7_3:30175697-30175716 Msa1100450:intron 45.0%
AAATCAGCTGTGACCGTAAC+GGG - chr7_3:30175698-30175717 Msa1100450:intron 45.0%
TATAGCTGTTGTCCCCGTTA+CGG + chr7_3:30175714-30175733 None:intergenic 45.0%
ATAGTTGCGGCAACAGTTAC+CGG - chr7_3:30175731-30175750 Msa1100450:intron 45.0%
TTTCGCGAAGTAGCTGCTAT+TGG + chr7_3:30175789-30175808 None:intergenic 45.0%
AATAGCAGCTACTTCGCGAA+AGG - chr7_3:30175788-30175807 Msa1100450:intron 45.0%
! GAAAGGAGCTCTTTGGGTTT+CGG - chr7_3:30175805-30175824 Msa1100450:intron 45.0%
ACCGTATACGGCTACTTATC+TGG - chr7_3:30175963-30175982 Msa1100450:intron 45.0%
!!! TGGTGGTGGGTGGTTTTTGT+TGG + chr7_3:30169156-30169175 None:intergenic 50.0%
GATGTGTTGGGTGAGAGTTC+AGG - chr7_3:30171072-30171091 Msa1100450:intron 50.0%
GGTGTTTGGCACCAACACAT+AGG + chr7_3:30171997-30172016 None:intergenic 50.0%
TGTGATGCATCTCCGGTGTT+TGG + chr7_3:30172011-30172030 None:intergenic 50.0%
! GAAGGTGTGTGATGCATCTC+CGG + chr7_3:30172018-30172037 None:intergenic 50.0%
!! GCACCGACACTTCAAGTTGA+AGG + chr7_3:30172036-30172055 None:intergenic 50.0%
ACAATGCACCGTCTCACAGA+TGG - chr7_3:30172126-30172145 Msa1100450:intron 50.0%
!!! GGTTACCGAGTTTTGAGACC+TGG - chr7_3:30172911-30172930 Msa1100450:intron 50.0%
! CGGAAGCACAACCATAACAC+TGG + chr7_3:30173770-30173789 None:intergenic 50.0%
TTCTTCTGTCGGTCCACGTT+TGG + chr7_3:30173924-30173943 None:intergenic 50.0%
AACGTGGACCGACAGAAGAA+TGG - chr7_3:30173924-30173943 Msa1100450:intron 50.0%
TGGACCGACAGAAGAATGGT+CGG - chr7_3:30173928-30173947 Msa1100450:intron 50.0%
CACTCCGACCATTCTTCTGT+CGG + chr7_3:30173935-30173954 None:intergenic 50.0%
! GCATGAGTATGTTGGTAGGG+TGG - chr7_3:30173989-30174008 Msa1100450:intron 50.0%
TGGCGTGATTGCGAATTACC+TGG - chr7_3:30174131-30174150 Msa1100450:intron 50.0%
TGACTTCCTCCGTACGCTTA+GGG - chr7_3:30174165-30174184 Msa1100450:intron 50.0%
ATACTTCCCTAAGCGTACGG+AGG + chr7_3:30174174-30174193 None:intergenic 50.0%
CAATCAGGGGCAATCATAGG+TGG + chr7_3:30174200-30174219 None:intergenic 50.0%
CACCTATGATTGCCCCTGAT+TGG - chr7_3:30174198-30174217 Msa1100450:intron 50.0%
ACCCAATCAGGGGCAATCAT+AGG + chr7_3:30174203-30174222 None:intergenic 50.0%
!! CATCAACGCTGTTCTGGAGT+GGG + chr7_3:30174231-30174250 None:intergenic 50.0%
!! TCATCAACGCTGTTCTGGAG+TGG + chr7_3:30174232-30174251 None:intergenic 50.0%
CATAGTCAGTGCTTCTCCAG+GGG + chr7_3:30175459-30175478 None:intergenic 50.0%
CCATAGTCAGTGCTTCTCCA+GGG + chr7_3:30175460-30175479 None:intergenic 50.0%
CGTTACGGTCACAGCTGATT+TGG + chr7_3:30175699-30175718 None:intergenic 50.0%
AATCAGCTGTGACCGTAACG+GGG - chr7_3:30175699-30175718 Msa1100450:intron 50.0%
GGGGACAACAGCTATAGTTG+CGG - chr7_3:30175718-30175737 Msa1100450:intron 50.0%
TAGTTGCGGCAACAGTTACC+GGG - chr7_3:30175732-30175751 Msa1100450:intron 50.0%
ACTTCGCGAAAGGAGCTCTT+TGG - chr7_3:30175798-30175817 Msa1100450:intron 50.0%
CTTCGCGAAAGGAGCTCTTT+GGG - chr7_3:30175799-30175818 Msa1100450:intron 50.0%
!! GCGAAATCAGCCGCTGATTT+GGG - chr7_3:30175845-30175864 Msa1100450:intron 50.0%
!! TGGTGGTGGGTGGTTCTTGT+CGG + chr7_3:30170966-30170985 None:intergenic 55.0%
GTGACTTCCTCCGTACGCTT+AGG - chr7_3:30174164-30174183 Msa1100450:intron 55.0%
GATTGCCCCTGATTGGGTCT+TGG - chr7_3:30174205-30174224 Msa1100450:intron 55.0%
AGTGGGCCAAGACCCAATCA+GGG + chr7_3:30174214-30174233 None:intergenic 55.0%
!! CCCTGGAGAAGCACTGACTA+TGG - chr7_3:30175457-30175476 Msa1100450:intron 55.0%
GCCATAGTCAGTGCTTCTCC+AGG + chr7_3:30175461-30175480 None:intergenic 55.0%
!! AGCACTGACTATGGCCCAAC+AGG - chr7_3:30175466-30175485 Msa1100450:intron 55.0%
AGTTACCGGGAGAGCAGCTA+TGG - chr7_3:30175745-30175764 Msa1100450:intron 55.0%
! GGCGAAATCAGCCGCTGATT+TGG - chr7_3:30175844-30175863 Msa1100450:intron 55.0%
AAACAAAGGGCAAGCGCGCG+TGG - chr7_3:30171114-30171133 Msa1100450:intron 60.0%
AACAAAGGGCAAGCGCGCGT+GGG - chr7_3:30171115-30171134 Msa1100450:intron 60.0%
GTGGGCCAAGACCCAATCAG+GGG + chr7_3:30174213-30174232 None:intergenic 60.0%
GAGTGGGCCAAGACCCAATC+AGG + chr7_3:30174215-30174234 None:intergenic 60.0%
AGCAGCCATAGCTGCTCTCC+CGG + chr7_3:30175753-30175772 None:intergenic 60.0%
GGGAGAGCAGCTATGGCTGC+TGG - chr7_3:30175752-30175771 Msa1100450:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 30168075 30176204 30168075 ID=Msa1100450;Name=Msa1100450
chr7_3 mRNA 30168075 30176204 30168075 ID=Msa1100450-mRNA-1;Parent=Msa1100450;Name=Msa1100450-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.6|0.66|0.66|0.6|0.66|6|318|282
chr7_3 exon 30168075 30168851 30168075 ID=Msa1100450-mRNA-1:exon:6446;Parent=Msa1100450-mRNA-1
chr7_3 exon 30169678 30169794 30169678 ID=Msa1100450-mRNA-1:exon:6445;Parent=Msa1100450-mRNA-1
chr7_3 exon 30170698 30170773 30170698 ID=Msa1100450-mRNA-1:exon:6444;Parent=Msa1100450-mRNA-1
chr7_3 exon 30171804 30171976 30171804 ID=Msa1100450-mRNA-1:exon:6443;Parent=Msa1100450-mRNA-1
chr7_3 exon 30175965 30175982 30175965 ID=Msa1100450-mRNA-1:exon:6442;Parent=Msa1100450-mRNA-1
chr7_3 exon 30176199 30176204 30176199 ID=Msa1100450-mRNA-1:exon:6441;Parent=Msa1100450-mRNA-1
chr7_3 CDS 30176199 30176204 30176199 ID=Msa1100450-mRNA-1:cds;Parent=Msa1100450-mRNA-1
chr7_3 CDS 30175965 30175982 30175965 ID=Msa1100450-mRNA-1:cds;Parent=Msa1100450-mRNA-1
chr7_3 CDS 30171804 30171976 30171804 ID=Msa1100450-mRNA-1:cds;Parent=Msa1100450-mRNA-1
chr7_3 CDS 30170698 30170773 30170698 ID=Msa1100450-mRNA-1:cds;Parent=Msa1100450-mRNA-1
chr7_3 CDS 30169678 30169794 30169678 ID=Msa1100450-mRNA-1:cds;Parent=Msa1100450-mRNA-1
chr7_3 CDS 30168393 30168851 30168393 ID=Msa1100450-mRNA-1:cds;Parent=Msa1100450-mRNA-1
chr7_3 three_prime_UTR 30168075 30168392 30168075 ID=Msa1100450-mRNA-1:three_prime_utr;Parent=Msa1100450-mRNA-1
Gene Sequence

>Msa1100450

ATGGATATTGGTCGATCTGAACGTGTTGTTGAATCTGGTTCTGTTTTTTCCATCTTCAGAATCTTCAATCAGTTAACAAATATGTATCCCGGTGGCTATACTGCTGAAATCACAAACTTAACCCCAAGAGCGACAGAGAATGATGTGCAGAACTTTTTTGAATACTGTGGTGTAATTGAACGTGTTGATGTGATAAGGTCCAGTGATTATGAGTCTACTGCATATGTGACTTTTAGGGATGCTTATGCCCTGGAAACTGCATTATTGCTGAATGGATCGATGATTTTGGACCAATGCATTTCTATTTCACGCTGGGAAACTTATACAGATGACAGCAATAACTGGAACAATCATACTCCAAACCATGAAGACAGTATAACATACTCACAAGATATGCACATGGACAAGTTTATTTCTTCCCCTGGAGAAGCACTGACTATGGCCCAACAGGTTGTCAAAACAATGGTAGCTAAAGGATTTGTGCTGAGCAAAGATGCATTTGTGATGGCAAAAGCTTTTGACGAATCGCGCAGTGTATCATCTACAGCAGCAAACAAGGTTGCTGAACTCAGCAACAAAATTGGTTTGACTGAAACCATAAATTCAGGCATTGAAAGATTTAAATATGTGGATGAAAACTATCATGTTACAGATATCACCAAATCAGCTGTGACCGTAACGGGGACAACAGCTATAGTTGCGGCAACAGTTACCGGGAGAGCAGCTATGGCTGCTGGTAATGCTATAGCCAATAGCAGCTACTTCGCGAAAGGAGCTCTTTGGGTTTCGGATATGTTATCTCGTGCGGCGAAATCAGCCGCTGATTTGGGTCATCATCAAAACAACTGA

Protein sequence

>Msa1100450

MDIGRSERVVESGSVFSIFRIFNQLTNMYPGGYTAEITNLTPRATENDVQNFFEYCGVIERVDVIRSSDYESTAYVTFRDAYALETALLLNGSMILDQCISISRWETYTDDSNNWNNHTPNHEDSITYSQDMHMDKFISSPGEALTMAQQVVKTMVAKGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIERFKYVDENYHVTDITKSAVTVTGTTAIVAATVTGRAAMAAGNAIANSSYFAKGALWVSDMLSRAAKSAADLGHHQNN*