AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130070 MtrunA17_Chr1g0197251 94.028 988 27 3 1 987 15 971 0.0 1910
Msa0130070 MtrunA17_Chr3g0132391 30.168 358 193 14 281 622 200 516 6.87e-23 105
Msa0130070 MtrunA17_Chr8g0389131 27.211 294 152 12 281 553 172 424 3.11e-17 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130070 AT5G04360.1 68.615 924 258 3 62 985 72 963 0.0 1322
Msa0130070 AT5G04360.2 68.615 924 258 3 62 985 72 963 0.0 1322
Msa0130070 AT4G09020.1 30.195 308 167 12 324 622 235 503 6.23e-23 105
Msa0130070 AT2G39930.3 27.350 351 188 15 324 648 217 526 2.65e-15 80.9
Msa0130070 AT2G39930.1 27.350 351 188 15 324 648 217 526 2.68e-15 81.3
Msa0130070 AT2G39930.2 27.350 351 188 15 324 648 217 526 6.56e-15 79.7

Find 262 sgRNAs with CRISPR-Local

Find 787 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGACATTGTGAGCTTAA+AGG 0.181249 1_3:+60116564 Msa0130070:CDS
GATGGTCATGATGGCTTTCC+TGG 0.187776 1_3:+60118212 Msa0130070:CDS
TCTTAAACCTGTTGCGTATA+AGG 0.214452 1_3:+60117806 Msa0130070:CDS
AATCTTGCTGGAACACAAAT+TGG 0.219718 1_3:+60112842 Msa0130070:CDS
TTACATACAATTCCAATAAC+TGG 0.246376 1_3:+60117313 Msa0130070:CDS
ACTGGACCATCGCTGGTTTC+TGG 0.249604 1_3:+60118167 Msa0130070:CDS
ATCAGAGAAAGAATGTAAAA+TGG 0.249934 1_3:-60109634 None:intergenic
AAAGGTACAACCCTGTTCTT+TGG 0.254002 1_3:+60110988 Msa0130070:intron
TATTGTACTCAAGAGCTTAT+TGG 0.266539 1_3:+60107182 Msa0130070:CDS
AGTTATATTCATCAAAGTTT+TGG 0.272406 1_3:-60110881 None:intergenic
GAATGTGAATGCTTTGTTTC+GGG 0.273854 1_3:+60118643 Msa0130070:three_prime_UTR
GAATACACTTACAGTCTCTA+TGG 0.277135 1_3:-60116345 None:intergenic
TGTAATTATTACATTATTAT+CGG 0.278795 1_3:-60118679 None:intergenic
GCATATATGAATTGCATATA+AGG 0.279594 1_3:+60109661 Msa0130070:CDS
AAGACCAACACCCCAGTTAT+TGG 0.280956 1_3:-60117325 None:intergenic
TTACTTGCATAGCTGCCTTT+AGG 0.287306 1_3:-60111017 None:intergenic
AATTGCATATAAGGGATTTC+AGG 0.294083 1_3:+60109670 Msa0130070:CDS
ATTGTACTCAAGAGCTTATT+GGG 0.294199 1_3:+60107183 Msa0130070:CDS
AGTGATTATGATGCTAGTTT+TGG 0.295966 1_3:+60118702 Msa0130070:three_prime_UTR
TTGCCAACATTTCAATTTGC+TGG 0.298068 1_3:+60110350 Msa0130070:CDS
AAAACTTTGATGAATATAAC+TGG 0.303798 1_3:+60110883 Msa0130070:CDS
TCAAAATATGAGGCTTCTTC+TGG 0.304044 1_3:+60118559 Msa0130070:CDS
AATGTTGATCATCATCAAAA+TGG 0.306446 1_3:+60107229 Msa0130070:CDS
ATTTGGCCACCCTCTTCAAC+AGG 0.307402 1_3:+60113203 Msa0130070:CDS
AAAAGGTGTATTACATTTGC+AGG 0.313809 1_3:-60108028 None:intergenic
TACAATCATTTGCAGGGAAA+TGG 0.314634 1_3:+60111279 Msa0130070:CDS
TACTTGCATAGCTGCCTTTA+GGG 0.319608 1_3:-60111016 None:intergenic
ATTGAAGATTTCTTGATTGC+AGG 0.319654 1_3:-60118401 None:intergenic
CTTTCCTGGGTTGTCTCAGC+TGG 0.320329 1_3:+60118226 Msa0130070:CDS
CAATGGCAGTAGTAGATAAA+TGG 0.329557 1_3:+60115510 Msa0130070:CDS
GAAGGGAAAGAAAGTGAAAA+TGG 0.334303 1_3:-60106850 None:intergenic
AAGGTACAACCCTGTTCTTT+GGG 0.334500 1_3:+60110989 Msa0130070:intron
CATAAATAACAATCGCCAAC+TGG 0.340668 1_3:-60108662 None:intergenic
AGATAACCACCGCGAAATTC+AGG 0.345010 1_3:-60110088 None:intergenic
CGAAACTCAATTGTACGGTT+TGG 0.349317 1_3:-60111050 None:intergenic
GCTTCTCAGTTCAATCTTGC+TGG 0.349733 1_3:+60112830 Msa0130070:CDS
TACTGTCTACAATCATTTGC+AGG 0.352877 1_3:+60111272 Msa0130070:CDS
TTGAGGAGGAACACGGTGTT+TGG 0.355434 1_3:+60109273 Msa0130070:CDS
GGGTTCAGATTTGACCTTAT+GGG 0.356426 1_3:+60112037 Msa0130070:CDS
ATTGAAATGTTGGCAATAGA+TGG 0.361387 1_3:-60110343 None:intergenic
TGGGTTCAGATTTGACCTTA+TGG 0.365737 1_3:+60112036 Msa0130070:CDS
ATCCTATTTCTGCAGCCTAA+TGG 0.365977 1_3:+60113599 Msa0130070:intron
TCTTCAATTGCATCCCGTTC+AGG 0.367312 1_3:+60118416 Msa0130070:CDS
ATTCAAAGAAGCATCTTTGC+TGG 0.372570 1_3:-60107269 None:intergenic
TGAGTTTCGTAAGATGGTTC+AGG 0.374682 1_3:+60111064 Msa0130070:CDS
ATTGTACGGTTTGGACCATT+TGG 0.375344 1_3:-60111041 None:intergenic
AAGAGATTTAATATCTGAAC+CGG 0.376317 1_3:-60108631 None:intergenic
CGAATTCGTGATTCCGTGCT+TGG 0.380874 1_3:+60113171 Msa0130070:CDS
TGTATCTTATAGATTGTTCC+AGG 0.381127 1_3:+60111470 Msa0130070:intron
GACTGGCAGACCCATCCTTC+AGG 0.389756 1_3:+60117746 Msa0130070:CDS
GTGCTTGGTGGATCTCCATT+TGG 0.393201 1_3:+60113186 Msa0130070:CDS
TACAATTGAGTTTCGTAAGA+TGG 0.394970 1_3:+60111058 Msa0130070:CDS
TGTACTGGTTTGCAGTTACC+TGG 0.404064 1_3:+60108990 Msa0130070:CDS
TTAGGGACACCCCAAAGAAC+AGG 0.407237 1_3:-60110999 None:intergenic
TGTTAAGAGTTCAAAATATG+AGG 0.409680 1_3:+60118549 Msa0130070:CDS
AAAGAAAAGGATGGAGTTGA+TGG 0.412794 1_3:+60112600 Msa0130070:CDS
GTTCTTTGGGGTGTCCCTAA+AGG 0.412927 1_3:+60111002 Msa0130070:CDS
ATCCATGCTTTCTGCATCAA+TGG 0.413531 1_3:+60113652 Msa0130070:CDS
TGCCAACATTTCAATTTGCT+GGG 0.414102 1_3:+60110351 Msa0130070:CDS
ATGTTGATCATCATCAAAAT+GGG 0.418159 1_3:+60107230 Msa0130070:CDS
CTATAACACTTGTTGCCAAA+TGG 0.418707 1_3:-60116731 None:intergenic
ACAAACCACTTCCATTTCTC+AGG 0.419589 1_3:+60107017 Msa0130070:CDS
GTTTATTAGATTGGAATGGC+TGG 0.421115 1_3:+60114390 Msa0130070:intron
ACCTGATGGATGGGAAAATC+TGG 0.421396 1_3:+60109599 Msa0130070:CDS
TCAGAGAAAGAATGTAAAAT+GGG 0.423721 1_3:-60109633 None:intergenic
CATATATGAATTGCATATAA+GGG 0.427160 1_3:+60109662 Msa0130070:CDS
AGCTGTATCACTTTATTTGT+GGG 0.427599 1_3:+60109070 Msa0130070:CDS
AAGGATGGGTCTGCCAGTCT+TGG 0.429846 1_3:-60117742 None:intergenic
TTCAACAGAGGAAGAAGAAA+GGG 0.430859 1_3:-60106995 None:intergenic
AAGAATACCTTATACGCAAC+AGG 0.431710 1_3:-60117813 None:intergenic
ATTTCGAATTCTCAAATTCA+AGG 0.432314 1_3:+60107292 Msa0130070:CDS
GTTCCATGATCATAGCCATT+AGG 0.433887 1_3:-60113614 None:intergenic
AAGCTGTATCACTTTATTTG+TGG 0.434562 1_3:+60109069 Msa0130070:CDS
ACACTGGGCAGTCAATTATA+AGG 0.435933 1_3:+60111601 Msa0130070:CDS
TCCTTTGAGGCCTGAAGGAT+GGG 0.439467 1_3:-60117756 None:intergenic
ACAATCATTTGCAGGGAAAT+GGG 0.440654 1_3:+60111280 Msa0130070:CDS
TTGCAGGCTCTTAGTCATAC+TGG 0.444576 1_3:+60111231 Msa0130070:intron
TACTGCGAGTGAGCATTCTA+TGG 0.445904 1_3:+60111550 Msa0130070:CDS
TCTGATAGATACGTCGGTAC+TGG 0.447407 1_3:+60110809 Msa0130070:intron
TGAACATTCTGTCCTTGATA+AGG 0.447650 1_3:+60111311 Msa0130070:CDS
TACATCTATAAGCACCCATC+AGG 0.449510 1_3:+60109224 Msa0130070:CDS
TCACTCAATCTCTTATTGCT+TGG 0.455402 1_3:+60107206 Msa0130070:CDS
TAAGCATACCCTCTAGCATA+TGG 0.455428 1_3:-60109398 None:intergenic
AATTAAGCTTGAAGAGGATA+AGG 0.459535 1_3:+60107997 Msa0130070:CDS
TGAATGTGAATGCTTTGTTT+CGG 0.461091 1_3:+60118642 Msa0130070:three_prime_UTR
ATGTCAATACCTCTTGTCCT+TGG 0.461640 1_3:-60114443 None:intergenic
TTATCTTGCCTTCACTTTGA+CGG 0.463728 1_3:+60110105 Msa0130070:CDS
CAGCCTAATGGCTATGATCA+TGG 0.464027 1_3:+60113611 Msa0130070:intron
TACCTCTTGTCCTTGGGAGT+TGG 0.464514 1_3:-60114436 None:intergenic
TTTCAACCCGCGAAGTGCTC+GGG 0.465175 1_3:-60109358 None:intergenic
GAAGAAGAAGAAAGAGGTGG+TGG 0.467589 1_3:-60106973 None:intergenic
CACGGTGTTTGGAGAACTAA+AGG 0.468439 1_3:+60109284 Msa0130070:CDS
ATCGAGATTCATACAACTCC+GGG 0.468527 1_3:+60117069 Msa0130070:CDS
GCTTGTTGCTGATCTGAATC+AGG 0.471188 1_3:-60110843 None:intergenic
AAGAAGAAGAAAGAGGTGGT+GGG 0.471380 1_3:-60106972 None:intergenic
GTATAGCATTTGCCGTCCTC+AGG 0.472135 1_3:-60117849 None:intergenic
ATTCATACAACTCCGGGGAT+TGG 0.472633 1_3:+60117075 Msa0130070:CDS
TGCATCAATGGATCACATCC+AGG 0.473959 1_3:+60113664 Msa0130070:CDS
GATAATTCCTGACCTTATCA+AGG 0.480992 1_3:-60111323 None:intergenic
GAGGACGGCAAATGCTATAC+AGG 0.481199 1_3:+60117852 Msa0130070:CDS
GGGTATGAGGCAAATGCAAC+GGG 0.483297 1_3:-60116323 None:intergenic
CCAACGTTTAACAAAAGAAA+AGG 0.483690 1_3:+60112587 Msa0130070:CDS
ATCTTGCTGGAACACAAATT+GGG 0.485543 1_3:+60112843 Msa0130070:CDS
TACAGTCTCTATGGGGTATG+AGG 0.485942 1_3:-60116336 None:intergenic
TGTCAATACCTCTTGTCCTT+GGG 0.487085 1_3:-60114442 None:intergenic
TGTTGAAGAGGGTGGCCAAA+TGG 0.487491 1_3:-60113201 None:intergenic
TTCCAGGTTACTATCTAAGA+AGG 0.491500 1_3:+60111486 Msa0130070:CDS
AGTACAGGTGGTAGCGATGA+TGG 0.492346 1_3:+60115560 Msa0130070:CDS
TTATGGGATCATCTCCTGAT+GGG 0.493100 1_3:-60109238 None:intergenic
TCCTCGATGATCTTGTACAC+TGG 0.494343 1_3:+60111585 Msa0130070:CDS
GGGTGTTGGTCTTCCTCCAC+AGG 0.494683 1_3:+60117335 Msa0130070:CDS
AGTGAAGGACGAGGGAATGA+TGG 0.494890 1_3:-60106895 None:intergenic
ATCTCTTCTTAAATCCCAGT+TGG 0.495081 1_3:+60108647 Msa0130070:CDS
AGATTTCTTGATTGCAGGGA+AGG 0.495120 1_3:-60118396 None:intergenic
GCTAATGATCCATATGCTAG+AGG 0.495977 1_3:+60109389 Msa0130070:CDS
TGATGGAAGAAGATTGAGGT+TGG 0.496207 1_3:-60106878 None:intergenic
ATTCGTGATTCCGTGCTTGG+TGG 0.497022 1_3:+60113174 Msa0130070:CDS
ACCCCAGCAAATTGAAATGT+TGG 0.497846 1_3:-60110353 None:intergenic
GAAAGTGATTGTACCTGAAC+GGG 0.499135 1_3:-60118429 None:intergenic
TTGAAGATTTCTTGATTGCA+GGG 0.499401 1_3:-60118400 None:intergenic
TATGACAAAGTTGTAAGTAC+AGG 0.499643 1_3:+60115545 Msa0130070:CDS
GAAAGGGAAGAAGAAGAAAG+AGG 0.500252 1_3:-60106979 None:intergenic
ACTCCGGGGATTGGTTCAAC+AGG 0.500414 1_3:+60117084 Msa0130070:CDS
GAGATGCAGGATAAACCATT+TGG 0.500912 1_3:+60116716 Msa0130070:CDS
TACTGGCCTTCATGTTGTGT+TGG 0.501067 1_3:+60111248 Msa0130070:CDS
GGGTCGGAAGTATTAACATA+TGG 0.501335 1_3:+60116293 Msa0130070:CDS
ATCCTTTGAGGCCTGAAGGA+TGG 0.501907 1_3:-60117757 None:intergenic
GTTTGAATAAACCTGAGAAA+TGG 0.502202 1_3:-60107028 None:intergenic
AGAAATTGTCCATTGTAGCT+AGG 0.503045 1_3:-60117786 None:intergenic
TCAGTGTGGCTGAGAGATGC+AGG 0.503417 1_3:+60116703 Msa0130070:CDS
TACATACAATTCCAATAACT+GGG 0.506875 1_3:+60117314 Msa0130070:CDS
GCTCAGCTGATGAGAAATGC+AGG 0.508969 1_3:+60108964 Msa0130070:intron
AAGCATCTTTGCTGGAAAGT+AGG 0.511681 1_3:-60107261 None:intergenic
GTTCAACAGAGGAAGAAGAA+AGG 0.513430 1_3:-60106996 None:intergenic
GCTAGGATGTCAATCCTTTG+AGG 0.514911 1_3:-60117769 None:intergenic
AAAGAGAACTGGAGAAATGT+TGG 0.516865 1_3:+60110386 Msa0130070:CDS
CCTCGATGATCTTGTACACT+GGG 0.517069 1_3:+60111586 Msa0130070:CDS
TGAATGCTTTGTTTCGGGTG+TGG 0.517576 1_3:+60118648 Msa0130070:three_prime_UTR
GAGAAATTTCCACACATTCG+AGG 0.519760 1_3:+60108585 Msa0130070:CDS
TCACAACACTGGACCATCGC+TGG 0.519979 1_3:+60118160 Msa0130070:CDS
ATGGTCATGATGGCTTTCCT+GGG 0.520278 1_3:+60118213 Msa0130070:CDS
TTAAGCAGACTTTCATCAGA+TGG 0.520876 1_3:+60109534 Msa0130070:intron
GTAGTAGATAAATGGAGAGG+TGG 0.523775 1_3:+60115518 Msa0130070:CDS
CTAAAGAAATTATCAAGTGC+GGG 0.526067 1_3:+60110308 Msa0130070:CDS
TCATGTTTATTAGATTGGAA+TGG 0.526733 1_3:+60114386 Msa0130070:intron
GATTTCTTGATTGCAGGGAA+GGG 0.527032 1_3:-60118395 None:intergenic
ACCCATCCTTCAGGCCTCAA+AGG 0.528067 1_3:+60117755 Msa0130070:CDS
AGGACAGAATGTTCATCAAA+GGG 0.528465 1_3:-60111303 None:intergenic
GATTGAGGTTGGAAATTGAA+GGG 0.530581 1_3:-60106867 None:intergenic
TATGGTGAAGGATGGGACTT+TGG 0.531936 1_3:+60112776 Msa0130070:CDS
CTAACAAATGATATTTCTTG+TGG 0.533664 1_3:-60118372 None:intergenic
TTAGAGAAGAGTGGCAGCAA+TGG 0.535689 1_3:+60115493 Msa0130070:intron
GTCACAAAACCCTGTTGAAG+AGG 0.535691 1_3:-60113213 None:intergenic
AATTCCAATAACTGGGGTGT+TGG 0.536708 1_3:+60117321 Msa0130070:CDS
AAAACAGATATGGTGAAGGA+TGG 0.537753 1_3:+60112768 Msa0130070:intron
GGAAGGTACAGTGAAGGACG+AGG 0.540346 1_3:-60106904 None:intergenic
TTTGAAAATTAAGCTTGAAG+AGG 0.540775 1_3:+60107991 Msa0130070:CDS
GTCAATCCTTTGAGGCCTGA+AGG 0.542746 1_3:-60117761 None:intergenic
GATACTCCGCTCAAAATCAC+TGG 0.543487 1_3:+60117046 Msa0130070:CDS
TATACCACCCGAGCACTTCG+CGG 0.543517 1_3:+60109351 Msa0130070:CDS
TTTATGGGATCATCTCCTGA+TGG 0.543646 1_3:-60109239 None:intergenic
AGATTGAGGTTGGAAATTGA+AGG 0.543706 1_3:-60106868 None:intergenic
AATACACTTACAGTCTCTAT+GGG 0.543898 1_3:-60116344 None:intergenic
TGGAAAGTAGTAGATGAAGA+AGG 0.545285 1_3:-60106925 None:intergenic
AGAAAATATACTTGAGCGGT+AGG 0.545851 1_3:-60109095 None:intergenic
TCTTCATTATATGACCCATA+AGG 0.548661 1_3:-60112051 None:intergenic
TTTCAGAATGAAACCAAGAC+TGG 0.549922 1_3:+60117729 Msa0130070:intron
AGCTATGCAAGTAATCCAAA+TGG 0.550803 1_3:+60111026 Msa0130070:CDS
TCTTACGAAACTCAATTGTA+CGG 0.551046 1_3:-60111055 None:intergenic
TCCATCAGGTTTCAACTCAT+CGG 0.551583 1_3:-60109586 None:intergenic
TAAGCTCACAATGTCAAAGA+GGG 0.552824 1_3:-60116560 None:intergenic
AAGGACAGAATGTTCATCAA+AGG 0.554747 1_3:-60111304 None:intergenic
AGAAGAAGAAAGAGGTGGTG+GGG 0.554849 1_3:-60106971 None:intergenic
GCCGTCCTCAGGCGGAAAAG+TGG 0.554849 1_3:-60117838 None:intergenic
AAGTAGTAGATGAAGAAGGA+AGG 0.555513 1_3:-60106921 None:intergenic
TCCGATGAGTTGAAACCTGA+TGG 0.558445 1_3:+60109585 Msa0130070:CDS
AAAGCTTTCAATATGCCTCC+CGG 0.559515 1_3:+60108612 Msa0130070:CDS
TCTGTGCAGCCTGAATTTCG+CGG 0.561682 1_3:+60110079 Msa0130070:CDS
TCGGAAGTATTAACATATGG+TGG 0.569218 1_3:+60116296 Msa0130070:CDS
CTAATGATCCATATGCTAGA+GGG 0.569869 1_3:+60109390 Msa0130070:CDS
TGAAAGTGATTGTACCTGAA+CGG 0.570977 1_3:-60118430 None:intergenic
GAGAAATGCAGGGACTGTAC+TGG 0.571550 1_3:+60108975 Msa0130070:CDS
ATCCATTGATGCAGAAAGCA+TGG 0.572725 1_3:-60113654 None:intergenic
AAACAGATATGGTGAAGGAT+GGG 0.572848 1_3:+60112769 Msa0130070:intron
GATCGAGATTCATACAACTC+CGG 0.574564 1_3:+60117068 Msa0130070:CDS
TCTAAAGAAATTATCAAGTG+CGG 0.576534 1_3:+60110307 Msa0130070:CDS
ATACCTGTTGAACCAATCCC+CGG 0.577271 1_3:-60117087 None:intergenic
ATGAGTTGAAACCTGATGGA+TGG 0.577800 1_3:+60109589 Msa0130070:CDS
CAACCCGCGAAGTGCTCGGG+TGG 0.578847 1_3:-60109355 None:intergenic
GCAGACTTTCATCAGATGGA+AGG 0.580459 1_3:+60109538 Msa0130070:intron
ACACCGTGTTCCTCCTCAAG+AGG 0.582367 1_3:-60109269 None:intergenic
ACGGTGTTTGGAGAACTAAA+GGG 0.582788 1_3:+60109285 Msa0130070:CDS
ATAAATAACAATCGCCAACT+GGG 0.583519 1_3:-60108661 None:intergenic
GCTTTGTAGCCTCGAATGTG+TGG 0.584101 1_3:-60108594 None:intergenic
GGGGTATGAGGCAAATGCAA+CGG 0.586241 1_3:-60116324 None:intergenic
AAATGGAGATCCACCAAGCA+CGG 0.587147 1_3:-60113184 None:intergenic
AGGCTGCACAGAGAGATCAT+TGG 0.587643 1_3:-60110068 None:intergenic
AAGCTTGAAGAGGATAAGGC+TGG 0.590392 1_3:+60108001 Msa0130070:CDS
CAGCTGTGTTCGTCGAGCCA+AGG 0.598123 1_3:+60118608 Msa0130070:CDS
TTTGGCCACCCTCTTCAACA+GGG 0.599209 1_3:+60113204 Msa0130070:CDS
GAAGAAGGAAGGTACAGTGA+AGG 0.600053 1_3:-60106910 None:intergenic
ATACCACCCGAGCACTTCGC+GGG 0.601456 1_3:+60109352 Msa0130070:CDS
AACCAACTCCCAAGGACAAG+AGG 0.601989 1_3:+60114434 Msa0130070:CDS
AAACTTTGATGAATATAACT+GGG 0.604338 1_3:+60110884 Msa0130070:CDS
TAGCATTTGCCGTCCTCAGG+CGG 0.604532 1_3:-60117846 None:intergenic
CGAGTACGCTTTCACAACAC+TGG 0.604677 1_3:+60118149 Msa0130070:CDS
GACAAAGTTGTAAGTACAGG+TGG 0.605664 1_3:+60115548 Msa0130070:CDS
TTAAGCTCACAATGTCAAAG+AGG 0.608541 1_3:-60116561 None:intergenic
GGTGTATTACATTTGCAGGA+AGG 0.609159 1_3:-60108024 None:intergenic
GGAAGTGGTTTGTTCAACAG+AGG 0.610644 1_3:-60107007 None:intergenic
GTTCCTCTTGAGGAGGAACA+CGG 0.610875 1_3:+60109266 Msa0130070:CDS
TTCCTTCTTAGATAGTAACC+TGG 0.611688 1_3:-60111488 None:intergenic
AAGGATTACCGTCAAAGTGA+AGG 0.612023 1_3:-60110113 None:intergenic
GCAGTAGTAGATAAATGGAG+AGG 0.618283 1_3:+60115515 Msa0130070:CDS
AAGTGTTATAGCATTATCAC+AGG 0.618531 1_3:+60116743 Msa0130070:CDS
CGTTTAACAAAAGAAAAGGA+TGG 0.620727 1_3:+60112591 Msa0130070:CDS
ATAGTGATGAGCATTGAAGA+TGG 0.621334 1_3:+60118194 Msa0130070:CDS
AGGGAAGAAGAAGAAAGAGG+TGG 0.621556 1_3:-60106976 None:intergenic
AGCATTGAAGATGGTCATGA+TGG 0.623024 1_3:+60118203 Msa0130070:CDS
CTCAGCTGATGAGAAATGCA+GGG 0.623428 1_3:+60108965 Msa0130070:intron
TCACAAAACCCTGTTGAAGA+GGG 0.624283 1_3:-60113212 None:intergenic
TATTCACTTTCAGACTCCGT+CGG 0.625705 1_3:+60116677 Msa0130070:intron
CGGAAGTATTAACATATGGT+GGG 0.626066 1_3:+60116297 Msa0130070:CDS
ATAAACCTGAGAAATGGAAG+TGG 0.626449 1_3:-60107022 None:intergenic
GCCAACATTTCAATTTGCTG+GGG 0.628938 1_3:+60110352 Msa0130070:CDS
AACTTTGATGAATATAACTG+GGG 0.629053 1_3:+60110885 Msa0130070:CDS
TATCTAAGAAGGAACACAGA+TGG 0.629387 1_3:+60111497 Msa0130070:CDS
ACTGTCTACAATCATTTGCA+GGG 0.631190 1_3:+60111273 Msa0130070:CDS
TGAGTTGAAACCTGATGGAT+GGG 0.632039 1_3:+60109590 Msa0130070:CDS
GTTGAGGTGTTAGAGAAGAG+TGG 0.634631 1_3:+60115484 Msa0130070:intron
GATTGACATCCTAGCTACAA+TGG 0.635719 1_3:+60117777 Msa0130070:CDS
CAAAACCCTGTTGAAGAGGG+TGG 0.637841 1_3:-60113209 None:intergenic
TAGGGACACCCCAAAGAACA+GGG 0.638095 1_3:-60110998 None:intergenic
AAAAGCTCATCTAAAACACC+AGG 0.639357 1_3:-60109008 None:intergenic
AGGTACAACCCTGTTCTTTG+GGG 0.639374 1_3:+60110990 Msa0130070:intron
TTTGTACTAACCAACTCCCA+AGG 0.641013 1_3:+60114426 Msa0130070:CDS
CACCATTCTGATAGATACGT+CGG 0.645570 1_3:+60110803 Msa0130070:intron
CAGTATCCAACACAACATGA+AGG 0.650812 1_3:-60111254 None:intergenic
GGAATGATGGAAGAAGATTG+AGG 0.653567 1_3:-60106882 None:intergenic
TGTTGCTGATCTGAATCAGG+TGG 0.655693 1_3:-60110840 None:intergenic
GTGCAGCCTGAATTTCGCGG+TGG 0.661169 1_3:+60110082 Msa0130070:CDS
TCAGCCACACTGATATCCGA+CGG 0.662189 1_3:-60116693 None:intergenic
GAATGCGAAGTGAAGTAGTG+TGG 0.667419 1_3:-60106945 None:intergenic
TGGAAGAAAATATACTTGAG+CGG 0.673604 1_3:-60109099 None:intergenic
TGTTGATCATCATCAAAATG+GGG 0.674555 1_3:+60107231 Msa0130070:CDS
TTGCTGGAACACAAATTGGG+AGG 0.682244 1_3:+60112846 Msa0130070:CDS
GGATCCAGCTGAGACAACCC+AGG 0.682593 1_3:-60118230 None:intergenic
AGAGATTTAATATCTGAACC+GGG 0.684268 1_3:-60108630 None:intergenic
ACATACAATTCCAATAACTG+GGG 0.685335 1_3:+60117315 Msa0130070:CDS
GAAGGTACAGTGAAGGACGA+GGG 0.701785 1_3:-60106903 None:intergenic
TCATATAATGAAGAGTACAA+TGG 0.703829 1_3:+60112060 Msa0130070:CDS
TCTGAGAAAAGTGCACCGAG+TGG 0.708335 1_3:-60109044 None:intergenic
ACAGGTGGTAGCGATGATGG+CGG 0.714411 1_3:+60115563 Msa0130070:CDS
GACTCCGTCGGATATCAGTG+TGG 0.715396 1_3:+60116689 Msa0130070:intron
TGTTGGCAATAGATGGACAT+GGG 0.721283 1_3:-60110336 None:intergenic
ATGTTGGCAATAGATGGACA+TGG 0.721857 1_3:-60110337 None:intergenic
ACTTTGATGAATATAACTGG+GGG 0.729448 1_3:+60110886 Msa0130070:CDS
ATGACTCCAGAAACCAGCGA+TGG 0.732163 1_3:-60118173 None:intergenic
ATACACTTACAGTCTCTATG+GGG 0.740403 1_3:-60116343 None:intergenic
GATTTAATATCTGAACCGGG+AGG 0.748409 1_3:-60108627 None:intergenic
TCGAGATTCATACAACTCCG+GGG 0.753701 1_3:+60117070 Msa0130070:CDS
CCCAGTGTACAAGATCATCG+AGG 0.774079 1_3:-60111586 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACTCTATAAAATTATATT+TGG - chr1_3:60107737-60107756 None:intergenic 10.0%
!!! ATTGGTAATATAAATTTAAA+AGG + chr1_3:60110577-60110596 Msa0130070:intron 10.0%
!! ATATAAATTTAAAAGGTTAA+AGG + chr1_3:60110584-60110603 Msa0130070:intron 10.0%
!! TATAAATTTAAAAGGTTAAA+GGG + chr1_3:60110585-60110604 Msa0130070:intron 10.0%
!!! ATATTTTTTAGAAAATTGAA+GGG - chr1_3:60111952-60111971 None:intergenic 10.0%
!!! AATATTATTTCTTAATTACT+AGG - chr1_3:60114566-60114585 None:intergenic 10.0%
!!! ATATTTTATAATAGCAATTA+TGG - chr1_3:60114973-60114992 None:intergenic 10.0%
!!! TTTTTTTTTTCATGATATTT+TGG + chr1_3:60116120-60116139 Msa0130070:intron 10.0%
!! TAAAATCATAATAAGTTATT+TGG - chr1_3:60116263-60116282 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTATGACT+AGG + chr1_3:60118279-60118298 Msa0130070:intron 10.0%
!! TGTAATTATTACATTATTAT+CGG - chr1_3:60118682-60118701 None:intergenic 10.0%
!! AGAAATTCGAATTAAAAAAA+AGG - chr1_3:60107118-60107137 None:intergenic 15.0%
!! CAAAAAAATTATTTGTGTTT+GGG + chr1_3:60107497-60107516 Msa0130070:intron 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG - chr1_3:60108173-60108192 None:intergenic 15.0%
!! ACTAGATTATAGAAATAATT+TGG - chr1_3:60109445-60109464 None:intergenic 15.0%
!!! ATTTTGTATTTAATCACTTA+CGG - chr1_3:60109468-60109487 None:intergenic 15.0%
!!! TAATTTTATCATAGTTATCT+TGG + chr1_3:60109709-60109728 Msa0130070:intron 15.0%
!!! TATTTTAATTTTAGTGCTTA+AGG - chr1_3:60109759-60109778 None:intergenic 15.0%
!!! ATTAACTACTTTAAAGATTA+TGG - chr1_3:60109924-60109943 None:intergenic 15.0%
!! ATTCAAATAAGAAGATAATA+AGG - chr1_3:60110244-60110263 None:intergenic 15.0%
!! AAAAAAAGTTATAAGAGTAA+AGG - chr1_3:60110520-60110539 None:intergenic 15.0%
!!! CATATTTTTTAGAAAATTGA+AGG - chr1_3:60111953-60111972 None:intergenic 15.0%
!! TTATAAAAAAATGCAAGATA+TGG + chr1_3:60112133-60112152 Msa0130070:intron 15.0%
!!! TTTTGTATTGTCAAAAAAAA+AGG + chr1_3:60112503-60112522 Msa0130070:intron 15.0%
!! AAAATAAAGAAATTAATACG+AGG - chr1_3:60112737-60112756 None:intergenic 15.0%
!! ATTTAATTGAAAAACAGATA+TGG + chr1_3:60112758-60112777 Msa0130070:intron 15.0%
!!! ATCTTTCAAGTTTAAAATAT+TGG + chr1_3:60113712-60113731 Msa0130070:intron 15.0%
!!! ATAAATTTCCAAGAAAATTT+TGG + chr1_3:60114798-60114817 Msa0130070:intron 15.0%
!! AAAATTAGAAATGGTTATTT+GGG - chr1_3:60114864-60114883 None:intergenic 15.0%
!! AGTATTATAACAACATATAT+TGG + chr1_3:60115813-60115832 Msa0130070:intron 15.0%
!! GTATTATAACAACATATATT+GGG + chr1_3:60115814-60115833 Msa0130070:intron 15.0%
!!! TAACTTATTATGATTTTATC+AGG + chr1_3:60116265-60116284 Msa0130070:intron 15.0%
!! ATAAAAACTTATTATCTGTT+GGG + chr1_3:60117613-60117632 Msa0130070:intron 15.0%
!! AATGATAATTCATAAATGCA+GGG - chr1_3:60107071-60107090 None:intergenic 20.0%
!! GCAAAAAAATTATTTGTGTT+TGG + chr1_3:60107496-60107515 Msa0130070:intron 20.0%
!!! ATTTTCTCAAGATATTATGA+GGG + chr1_3:60107831-60107850 Msa0130070:intron 20.0%
!! TCTTTCTATTTGTAATTGAT+AGG + chr1_3:60107962-60107981 Msa0130070:intron 20.0%
!!! GTAGTTGATTTTAATAGTTT+AGG - chr1_3:60108174-60108193 None:intergenic 20.0%
!!! TGTGTTTTTTTATTTTACAG+GGG - chr1_3:60108270-60108289 None:intergenic 20.0%
!!! CTGTGTTTTTTTATTTTACA+GGG - chr1_3:60108271-60108290 None:intergenic 20.0%
!!! TCTGTGTTTTTTTATTTTAC+AGG - chr1_3:60108272-60108291 None:intergenic 20.0%
!! AACTATTAAAATCGACTAAA+AGG - chr1_3:60108438-60108457 None:intergenic 20.0%
!! TTATTTATGATTGTAAGTAC+CGG + chr1_3:60108676-60108695 Msa0130070:intron 20.0%
!! GGAGTATATTTAAAAGTTAT+AGG + chr1_3:60108718-60108737 Msa0130070:intron 20.0%
!! GAAATAACATAAAATTCCTA+TGG + chr1_3:60109124-60109143 Msa0130070:intron 20.0%
!! TCTATCTTAATATGAAGATA+AGG - chr1_3:60109161-60109180 None:intergenic 20.0%
!!! ATCTTTGCACATTATTTTTT+GGG + chr1_3:60109180-60109199 Msa0130070:intron 20.0%
!! CATATATGAATTGCATATAA+GGG + chr1_3:60109662-60109681 Msa0130070:CDS 20.0%
!!! ACTTTAAAGATTATGGAAAT+TGG - chr1_3:60109917-60109936 None:intergenic 20.0%
!! TTCTTGAATGAGTAATATTT+GGG + chr1_3:60110494-60110513 Msa0130070:intron 20.0%
!! CTCATTTGCAAATTAAAAAT+TGG + chr1_3:60110559-60110578 Msa0130070:intron 20.0%
!!! AGTTATATTCATCAAAGTTT+TGG - chr1_3:60110884-60110903 None:intergenic 20.0%
!! AAAACTTTGATGAATATAAC+TGG + chr1_3:60110883-60110902 Msa0130070:CDS 20.0%
!! AAACTTTGATGAATATAACT+GGG + chr1_3:60110884-60110903 Msa0130070:CDS 20.0%
!! TTTATGTTCTCATCTTAAAA+AGG + chr1_3:60110970-60110989 Msa0130070:intron 20.0%
!! TATCGATAAATTTAACATCA+GGG - chr1_3:60111111-60111130 None:intergenic 20.0%
!! ATATCGATAAATTTAACATC+AGG - chr1_3:60111112-60111131 None:intergenic 20.0%
!! CAAAATCATATATATCAAAG+AGG - chr1_3:60111705-60111724 None:intergenic 20.0%
!! AAATCAATGATGTACTATTT+AGG - chr1_3:60111767-60111786 None:intergenic 20.0%
!! GATGAATGAAAATCAATTTA+TGG - chr1_3:60111986-60112005 None:intergenic 20.0%
!!! TTTTTTTCTTTTCAGATTGA+TGG + chr1_3:60112016-60112035 Msa0130070:intron 20.0%
!!! TTTTTTCTTTTCAGATTGAT+GGG + chr1_3:60112017-60112036 Msa0130070:intron 20.0%
!!! TATTTTTCCATGTTAATTTG+TGG - chr1_3:60113515-60113534 None:intergenic 20.0%
!! AAATAGTTAGCATTAAGAAT+GGG + chr1_3:60113899-60113918 Msa0130070:intron 20.0%
!! TAGATAATCGATAAAATTTG+TGG - chr1_3:60114124-60114143 None:intergenic 20.0%
!! ATCTTTCATGTTTATTAGAT+TGG + chr1_3:60114381-60114400 Msa0130070:intron 20.0%
!! GAAAATTAGAAATGGTTATT+TGG - chr1_3:60114865-60114884 None:intergenic 20.0%
!!! TTACTTCTGAAAATTAGAAA+TGG - chr1_3:60114873-60114892 None:intergenic 20.0%
!! TATGTATTGTGTGAATAAAA+GGG - chr1_3:60114916-60114935 None:intergenic 20.0%
!! TTATGTATTGTGTGAATAAA+AGG - chr1_3:60114917-60114936 None:intergenic 20.0%
!! TAAAAAAAGGAAGGAATAAA+TGG - chr1_3:60115973-60115992 None:intergenic 20.0%
!!! TTTTCATTATTGTGCATATT+AGG - chr1_3:60116211-60116230 None:intergenic 20.0%
!! ATGCACAATAATGAAAATAT+TGG + chr1_3:60116214-60116233 Msa0130070:intron 20.0%
!! AATATAGAGAATTATAGAAG+TGG - chr1_3:60116398-60116417 None:intergenic 20.0%
!! TATCATCTGTATCATTATAA+TGG + chr1_3:60117180-60117199 Msa0130070:intron 20.0%
!! GATAAAAACTTATTATCTGT+TGG + chr1_3:60117612-60117631 Msa0130070:intron 20.0%
!!! AGCTTTAATATTTTGATTTC+TGG + chr1_3:60118111-60118130 Msa0130070:intron 20.0%
!!! CAATATGTTTTAACATACAT+GGG - chr1_3:60118254-60118273 None:intergenic 20.0%
!! TCTACTTATAATTTCAAATG+AGG + chr1_3:60118474-60118493 Msa0130070:intron 20.0%
! ATGATAATTCATAAATGCAG+GGG - chr1_3:60107070-60107089 None:intergenic 25.0%
! CAATGATAATTCATAAATGC+AGG - chr1_3:60107072-60107091 None:intergenic 25.0%
! AATGTTGATCATCATCAAAA+TGG + chr1_3:60107229-60107248 Msa0130070:CDS 25.0%
! ATGTTGATCATCATCAAAAT+GGG + chr1_3:60107230-60107249 Msa0130070:CDS 25.0%
! ATTTCGAATTCTCAAATTCA+AGG + chr1_3:60107292-60107311 Msa0130070:CDS 25.0%
! CTCATAATATCTTGAGAAAA+TGG - chr1_3:60107832-60107851 None:intergenic 25.0%
!! CATTTTCTCAAGATATTATG+AGG + chr1_3:60107830-60107849 Msa0130070:intron 25.0%
! TTTGAAAATTAAGCTTGAAG+AGG + chr1_3:60107991-60108010 Msa0130070:CDS 25.0%
! AAGACGATAAAGACTAAAAA+AGG - chr1_3:60108048-60108067 None:intergenic 25.0%
!! AACCATGGGAATATATTTTA+GGG - chr1_3:60108201-60108220 None:intergenic 25.0%
!! AAACCATGGGAATATATTTT+AGG - chr1_3:60108202-60108221 None:intergenic 25.0%
!! TATATGAGGTATTAAACCAT+GGG - chr1_3:60108215-60108234 None:intergenic 25.0%
!! TTATATGAGGTATTAAACCA+TGG - chr1_3:60108216-60108235 None:intergenic 25.0%
! ATGAAGAATCCAAAATTACA+GGG - chr1_3:60108300-60108319 None:intergenic 25.0%
! TATGAAGAATCCAAAATTAC+AGG - chr1_3:60108301-60108320 None:intergenic 25.0%
!!! TTCATATTTTAACCCTTTAC+AGG + chr1_3:60108315-60108334 Msa0130070:intron 25.0%
!!! TCATATTTTAACCCTTTACA+GGG + chr1_3:60108316-60108335 Msa0130070:intron 25.0%
! TAATAGTTTAGTGACCAAAT+TGG + chr1_3:60108450-60108469 Msa0130070:intron 25.0%
!! TATTCTTCTTTTTGACAATG+TGG + chr1_3:60108504-60108523 Msa0130070:intron 25.0%
!!! TCTGCAAACTTTTTGTTTAT+AGG + chr1_3:60108557-60108576 Msa0130070:intron 25.0%
! AAGAGATTTAATATCTGAAC+CGG - chr1_3:60108634-60108653 None:intergenic 25.0%
!! CACTATATTTGGTGATATTT+GGG + chr1_3:60108851-60108870 Msa0130070:intron 25.0%
! AGTATAAACTAATGACTACA+AGG - chr1_3:60108920-60108939 None:intergenic 25.0%
!!! GATGAGCTTTTTTCATATAA+TGG + chr1_3:60109020-60109039 Msa0130070:CDS 25.0%
!!! GGAATTTTATGTTATTTCAG+TGG - chr1_3:60109122-60109141 None:intergenic 25.0%
!!! GATCTTTGCACATTATTTTT+TGG + chr1_3:60109179-60109198 Msa0130070:intron 25.0%
!! TCAAGAGGAACAATTTTTAT+GGG - chr1_3:60109257-60109276 None:intergenic 25.0%
!! AATTTGGAATAGACAATCAA+AGG - chr1_3:60109429-60109448 None:intergenic 25.0%
! GTTAAAACAACAAATCATTC+GGG - chr1_3:60109498-60109517 None:intergenic 25.0%
! GGTTAAAACAACAAATCATT+CGG - chr1_3:60109499-60109518 None:intergenic 25.0%
! GCTTAATACACAAAAATAAG+AGG - chr1_3:60109520-60109539 None:intergenic 25.0%
! TCAGAGAAAGAATGTAAAAT+GGG - chr1_3:60109636-60109655 None:intergenic 25.0%
! ATCAGAGAAAGAATGTAAAA+TGG - chr1_3:60109637-60109656 None:intergenic 25.0%
! GCATATATGAATTGCATATA+AGG + chr1_3:60109661-60109680 Msa0130070:CDS 25.0%
! AATATAAGCCTAAAGATATC+TGG - chr1_3:60109861-60109880 None:intergenic 25.0%
!!! TTGTTTTTAGAAGTATCACT+TGG + chr1_3:60109960-60109979 Msa0130070:intron 25.0%
!!! TGTTTTTAGAAGTATCACTT+GGG + chr1_3:60109961-60109980 Msa0130070:intron 25.0%
! CCATATCTATTCATAAAAGA+TGG - chr1_3:60110192-60110211 None:intergenic 25.0%
!! CCATCTTTTATGAATAGATA+TGG + chr1_3:60110189-60110208 Msa0130070:intron 25.0%
!!! ATCTACATGCATATTTTTGA+AGG + chr1_3:60110265-60110284 Msa0130070:intron 25.0%
! TCTAAAGAAATTATCAAGTG+CGG + chr1_3:60110307-60110326 Msa0130070:CDS 25.0%
! GTTCTTGAATGAGTAATATT+TGG + chr1_3:60110493-60110512 Msa0130070:intron 25.0%
! TGAAGTCAGATATATACAAA+AGG - chr1_3:60110785-60110804 None:intergenic 25.0%
!!! ATATTCATCAAAGTTTTGGA+TGG - chr1_3:60110880-60110899 None:intergenic 25.0%
! AACTTTGATGAATATAACTG+GGG + chr1_3:60110885-60110904 Msa0130070:CDS 25.0%
!!! GTTGTAGTTAATTTGTTATG+TGG + chr1_3:60111136-60111155 Msa0130070:intron 25.0%
! ATTTAACCAACAATAGACAA+TGG - chr1_3:60111172-60111191 None:intergenic 25.0%
!! ATAATGGAGAAATACTCAAT+AGG - chr1_3:60111416-60111435 None:intergenic 25.0%
! TAGATAGGCTAACAAAATAA+TGG - chr1_3:60111432-60111451 None:intergenic 25.0%
! GATGTACTATTTAGGAATTT+AGG - chr1_3:60111759-60111778 None:intergenic 25.0%
!! TATTAGTTATCCTGATTTGA+AGG + chr1_3:60111897-60111916 Msa0130070:intron 25.0%
! GATAAAAAATCCTTCAAATC+AGG - chr1_3:60111910-60111929 None:intergenic 25.0%
!! TTGAAGGGAAAGTATAATTA+AGG - chr1_3:60111937-60111956 None:intergenic 25.0%
!! TCATATAATGAAGAGTACAA+TGG + chr1_3:60112060-60112079 Msa0130070:CDS 25.0%
!!! TGCTTTAATGTTATTTCACT+CGG + chr1_3:60112184-60112203 Msa0130070:intron 25.0%
! AATCTGACATCATAAATCAA+TGG + chr1_3:60112298-60112317 Msa0130070:intron 25.0%
! AAATAAATGAATGCATGACA+AGG + chr1_3:60112367-60112386 Msa0130070:intron 25.0%
!!! TCTGGTTTAAATGTTCTTTT+TGG + chr1_3:60112949-60112968 Msa0130070:intron 25.0%
! TGACATGAATAATTATCAGT+AGG - chr1_3:60113373-60113392 None:intergenic 25.0%
!! TGTCACAGATTGTATATTTT+TGG + chr1_3:60113388-60113407 Msa0130070:intron 25.0%
! TTCATTGTAAAGTGGAAAAT+GGG - chr1_3:60113451-60113470 None:intergenic 25.0%
!! AAACTTGATATTTTCATGGT+TGG + chr1_3:60113777-60113796 Msa0130070:intron 25.0%
! CATTCTTAATGCTAACTATT+TGG - chr1_3:60113900-60113919 None:intergenic 25.0%
! CAAATAGTTAGCATTAAGAA+TGG + chr1_3:60113898-60113917 Msa0130070:intron 25.0%
! AATAGTTAGCATTAAGAATG+GGG + chr1_3:60113900-60113919 Msa0130070:intron 25.0%
!! AAATTCTCTGTGCAAAATTT+TGG + chr1_3:60113935-60113954 Msa0130070:intron 25.0%
! CTTATATGTACCAAATTGAT+CGG - chr1_3:60114355-60114374 None:intergenic 25.0%
! TCATGTTTATTAGATTGGAA+TGG + chr1_3:60114386-60114405 Msa0130070:intron 25.0%
! TTATTCAAATGAAACAGACA+TGG - chr1_3:60114534-60114553 None:intergenic 25.0%
!!! ATCTAGTGTTTTCTTGTTTT+AGG + chr1_3:60114619-60114638 Msa0130070:intron 25.0%
!!! CTGCTAAAAATTTAGGTTTT+CGG - chr1_3:60115308-60115327 None:intergenic 25.0%
!!! GAAAACCTAAATTTTTAGCA+GGG + chr1_3:60115307-60115326 Msa0130070:intron 25.0%
! TATAACAACATATATTGGGT+TGG + chr1_3:60115818-60115837 Msa0130070:intron 25.0%
! GAACTAAAAAATTGTATTGG+AGG - chr1_3:60115873-60115892 None:intergenic 25.0%
!! CTAGCTGTAAATTTTCTTTT+AGG - chr1_3:60116037-60116056 None:intergenic 25.0%
! CTAAAAGAAAATTTACAGCT+AGG + chr1_3:60116035-60116054 Msa0130070:intron 25.0%
! TGATAATATATCTTTAGTCC+TGG - chr1_3:60116070-60116089 None:intergenic 25.0%
! ATATTATCATACATGCTCTA+TGG + chr1_3:60116081-60116100 Msa0130070:intron 25.0%
!! TTATGATTTTATCAGGTGAA+AGG + chr1_3:60116272-60116291 Msa0130070:intron 25.0%
!! TATGATTTTATCAGGTGAAA+GGG + chr1_3:60116273-60116292 Msa0130070:intron 25.0%
! AATTATAGAAGTGGAAAAGT+GGG - chr1_3:60116389-60116408 None:intergenic 25.0%
!!! CTTTAGTTGTTTACTTTTTC+AGG + chr1_3:60116507-60116526 Msa0130070:intron 25.0%
! AGCTTAAAGGTAATTTGATA+TGG + chr1_3:60116577-60116596 Msa0130070:intron 25.0%
!!! ACATGCAGTTTATTTTTTTC+TGG + chr1_3:60116626-60116645 Msa0130070:intron 25.0%
!!! CATGCAGTTTATTTTTTTCT+GGG + chr1_3:60116627-60116646 Msa0130070:intron 25.0%
! ACTAAAGAATTTCTGTTCTT+AGG + chr1_3:60116995-60117014 Msa0130070:intron 25.0%
! CTAAAGAATTTCTGTTCTTA+GGG + chr1_3:60116996-60117015 Msa0130070:intron 25.0%
!!! GATACAGATGATATTAGTTT+TGG - chr1_3:60117173-60117192 None:intergenic 25.0%
! TTACATACAATTCCAATAAC+TGG + chr1_3:60117313-60117332 Msa0130070:CDS 25.0%
! TACATACAATTCCAATAACT+GGG + chr1_3:60117314-60117333 Msa0130070:CDS 25.0%
!! GTTTTTATCAATGTAATGCT+GGG - chr1_3:60117601-60117620 None:intergenic 25.0%
!! AGTTTTTATCAATGTAATGC+TGG - chr1_3:60117602-60117621 None:intergenic 25.0%
!! GTTTCATTCTGAAAAGTTAA+AGG - chr1_3:60117723-60117742 None:intergenic 25.0%
!!! GCAATATGTTTTAACATACA+TGG - chr1_3:60118255-60118274 None:intergenic 25.0%
! CTAACAAATGATATTTCTTG+TGG - chr1_3:60118375-60118394 None:intergenic 25.0%
! TGTTAAGAGTTCAAAATATG+AGG + chr1_3:60118549-60118568 Msa0130070:CDS 25.0%
GTTTGAATAAACCTGAGAAA+TGG - chr1_3:60107031-60107050 None:intergenic 30.0%
TGATAATTCATAAATGCAGG+GGG - chr1_3:60107069-60107088 None:intergenic 30.0%
TAACAAATTATCCTGCATCT+GGG - chr1_3:60107164-60107183 None:intergenic 30.0%
ATAACAAATTATCCTGCATC+TGG - chr1_3:60107165-60107184 None:intergenic 30.0%
TATTGTACTCAAGAGCTTAT+TGG + chr1_3:60107182-60107201 Msa0130070:CDS 30.0%
ATTGTACTCAAGAGCTTATT+GGG + chr1_3:60107183-60107202 Msa0130070:CDS 30.0%
TGTTGATCATCATCAAAATG+GGG + chr1_3:60107231-60107250 Msa0130070:CDS 30.0%
!! ACATTTGAAAAGCACTTCTA+AGG + chr1_3:60107769-60107788 Msa0130070:intron 30.0%
!! AAAATGGAAGTGGATTAAGA+GGG - chr1_3:60107816-60107835 None:intergenic 30.0%
ATATCTTGAGAAAATGGAAG+TGG - chr1_3:60107826-60107845 None:intergenic 30.0%
AATTAAGCTTGAAGAGGATA+AGG + chr1_3:60107997-60108016 Msa0130070:CDS 30.0%
! AAAAGGTGTATTACATTTGC+AGG - chr1_3:60108031-60108050 None:intergenic 30.0%
!! AAATACCTCTGATTGCTTTT+AGG + chr1_3:60108097-60108116 Msa0130070:intron 30.0%
TAATAGTTTAGGGACCAAAT+TGG - chr1_3:60108163-60108182 None:intergenic 30.0%
TCATATAACCCCTAATAGTT+GGG + chr1_3:60108228-60108247 Msa0130070:intron 30.0%
!!! CATATTTTAACCCTTTACAG+GGG + chr1_3:60108317-60108336 Msa0130070:intron 30.0%
TCAAATAGCTCCAGTAATTT+GGG - chr1_3:60108359-60108378 None:intergenic 30.0%
CTATCATTGTTTCACCAATT+TGG - chr1_3:60108467-60108486 None:intergenic 30.0%
GGTGAAACAATGATAGTTTA+TGG + chr1_3:60108471-60108490 Msa0130070:intron 30.0%
!! GCAAACTTTTTGTTTATAGG+TGG + chr1_3:60108560-60108579 Msa0130070:intron 30.0%
!! AACTTTTTGTTTATAGGTGG+TGG + chr1_3:60108563-60108582 Msa0130070:intron 30.0%
AGAGATTTAATATCTGAACC+GGG - chr1_3:60108633-60108652 None:intergenic 30.0%
ATAAATAACAATCGCCAACT+GGG - chr1_3:60108664-60108683 None:intergenic 30.0%
TGTAGAATGAAAACTCTACA+TGG + chr1_3:60108817-60108836 Msa0130070:intron 30.0%
! GCACTATATTTGGTGATATT+TGG + chr1_3:60108850-60108869 Msa0130070:intron 30.0%
ATTGTAATCTTGTGTAAGTG+TGG + chr1_3:60108882-60108901 Msa0130070:intron 30.0%
TTGTAATCTTGTGTAAGTGT+GGG + chr1_3:60108883-60108902 Msa0130070:intron 30.0%
! TTTTCATATAATGGTCCACT+CGG + chr1_3:60109029-60109048 Msa0130070:CDS 30.0%
! AAGCTGTATCACTTTATTTG+TGG + chr1_3:60109069-60109088 Msa0130070:CDS 30.0%
! AGCTGTATCACTTTATTTGT+GGG + chr1_3:60109070-60109089 Msa0130070:CDS 30.0%
TGGAAGAAAATATACTTGAG+CGG - chr1_3:60109102-60109121 None:intergenic 30.0%
!!! ATTTTTTGGGTGAAAACAGT+CGG + chr1_3:60109193-60109212 Msa0130070:intron 30.0%
! CTCAAGAGGAACAATTTTTA+TGG - chr1_3:60109258-60109277 None:intergenic 30.0%
CATAAAAATTGTTCCTCTTG+AGG + chr1_3:60109256-60109275 Msa0130070:CDS 30.0%
AATTGCATATAAGGGATTTC+AGG + chr1_3:60109670-60109689 Msa0130070:CDS 30.0%
TTTAGAGAGACTAAGATGTA+AGG - chr1_3:60110135-60110154 None:intergenic 30.0%
!! ATATTTTTGAAGGATTCAGC+AGG + chr1_3:60110275-60110294 Msa0130070:intron 30.0%
CTAAAGAAATTATCAAGTGC+GGG + chr1_3:60110308-60110327 Msa0130070:CDS 30.0%
ATTGAAATGTTGGCAATAGA+TGG - chr1_3:60110346-60110365 None:intergenic 30.0%
! TTGATGATCAAAAAGAGAAC+TGG + chr1_3:60110375-60110394 Msa0130070:CDS 30.0%
TTGAATACCTATGTCTATGT+AGG + chr1_3:60110700-60110719 Msa0130070:intron 30.0%
AGGATGGAACAAATGTTAAA+TGG - chr1_3:60110738-60110757 None:intergenic 30.0%
ATAAAAAGCTGCAAGATAGA+AGG - chr1_3:60110758-60110777 None:intergenic 30.0%
ACTTTGATGAATATAACTGG+GGG + chr1_3:60110886-60110905 Msa0130070:CDS 30.0%
AGTTTATAATACCACAGTGA+TGG + chr1_3:60110911-60110930 Msa0130070:intron 30.0%
ACAATTCAGACACTGATATA+TGG + chr1_3:60110934-60110953 Msa0130070:intron 30.0%
TCTTACGAAACTCAATTGTA+CGG - chr1_3:60111058-60111077 None:intergenic 30.0%
TACAATTGAGTTTCGTAAGA+TGG + chr1_3:60111058-60111077 Msa0130070:CDS 30.0%
!!! TCTTTTGTTGTTTTGTCTCT+TGG + chr1_3:60111196-60111215 Msa0130070:intron 30.0%
TTGGAATTTATGTACATTGC+AGG + chr1_3:60111215-60111234 Msa0130070:intron 30.0%
TGTATCTTATAGATTGTTCC+AGG + chr1_3:60111470-60111489 Msa0130070:intron 30.0%
!!! ACTTGCTGTTTTTCTGTTAA+TGG + chr1_3:60111727-60111746 Msa0130070:intron 30.0%
TCTTCATTATATGACCCATA+AGG - chr1_3:60112054-60112073 None:intergenic 30.0%
GTATGTAATGTAACTCACTT+TGG + chr1_3:60112082-60112101 Msa0130070:intron 30.0%
!! AATGTTATTTCACTCGGTTA+TGG + chr1_3:60112190-60112209 Msa0130070:intron 30.0%
!! ATGTTATTTCACTCGGTTAT+GGG + chr1_3:60112191-60112210 Msa0130070:intron 30.0%
TCTTAAATGAATGTGTGACA+AGG + chr1_3:60112339-60112358 Msa0130070:intron 30.0%
ATCAAAGAATCAATACAAGC+AGG - chr1_3:60112464-60112483 None:intergenic 30.0%
TGAAATATGATTTCGTGACA+TGG + chr1_3:60112538-60112557 Msa0130070:intron 30.0%
! CCTTTTCTTTTGTTAAACGT+TGG - chr1_3:60112590-60112609 None:intergenic 30.0%
CCAACGTTTAACAAAAGAAA+AGG + chr1_3:60112587-60112606 Msa0130070:CDS 30.0%
CGTTTAACAAAAGAAAAGGA+TGG + chr1_3:60112591-60112610 Msa0130070:CDS 30.0%
TTGAAAAACAGATATGGTGA+AGG + chr1_3:60112764-60112783 Msa0130070:intron 30.0%
AATGATTATTAAGCAGCATG+TGG - chr1_3:60112891-60112910 None:intergenic 30.0%
CATATCAGTTGAACTTACAT+CGG - chr1_3:60113024-60113043 None:intergenic 30.0%
ATCAGAAGTTTAAGTAACGA+TGG - chr1_3:60113076-60113095 None:intergenic 30.0%
!! TTATTGTTGATTTGTCTTGC+TGG + chr1_3:60113124-60113143 Msa0130070:intron 30.0%
ATTATCAAGAAGCTTGAGAA+GGG - chr1_3:60113301-60113320 None:intergenic 30.0%
TATTATCAAGAAGCTTGAGA+AGG - chr1_3:60113302-60113321 None:intergenic 30.0%
TGGATACAGAAAACATCTAA+GGG - chr1_3:60113415-60113434 None:intergenic 30.0%
ATGGATACAGAAAACATCTA+AGG - chr1_3:60113416-60113435 None:intergenic 30.0%
GTTCATTGTAAAGTGGAAAA+TGG - chr1_3:60113452-60113471 None:intergenic 30.0%
CAATGATGTTCATTGTAAAG+TGG - chr1_3:60113459-60113478 None:intergenic 30.0%
CACTTTACAATGAACATCAT+TGG + chr1_3:60113457-60113476 Msa0130070:intron 30.0%
TCACATTAGAATTCTACTAG+TGG - chr1_3:60113485-60113504 None:intergenic 30.0%
TTTGTTGCCACAAATTAACA+TGG + chr1_3:60113505-60113524 Msa0130070:intron 30.0%
AATTTCATAAAGCCAAAACC+TGG - chr1_3:60113685-60113704 None:intergenic 30.0%
! TGGCAAACTTGATATTTTCA+TGG + chr1_3:60113773-60113792 Msa0130070:intron 30.0%
CTGAAACAGACAAATAAGAA+AGG - chr1_3:60113844-60113863 None:intergenic 30.0%
ATAGTTAGCATTAAGAATGG+GGG + chr1_3:60113901-60113920 Msa0130070:intron 30.0%
TATCACTATTCCGATCAATT+TGG + chr1_3:60114342-60114361 Msa0130070:intron 30.0%
!! TTGTTTTATTCTGCTGAGAA+TGG + chr1_3:60114692-60114711 Msa0130070:intron 30.0%
TTAGAAATGGTTATTTGGGA+GGG - chr1_3:60114860-60114879 None:intergenic 30.0%
ATTAGAAATGGTTATTTGGG+AGG - chr1_3:60114861-60114880 None:intergenic 30.0%
!!! CGAAAACCTAAATTTTTAGC+AGG + chr1_3:60115306-60115325 Msa0130070:intron 30.0%
CTAATCCCTGCTAAAAATTT+AGG - chr1_3:60115315-60115334 None:intergenic 30.0%
GCTTATCCTAAATCTGTTAT+TGG + chr1_3:60115336-60115355 Msa0130070:intron 30.0%
TATAGAGTGTGGTGAAATAT+GGG - chr1_3:60115366-60115385 None:intergenic 30.0%
ATATAGAGTGTGGTGAAATA+TGG - chr1_3:60115367-60115386 None:intergenic 30.0%
AATACTTCCATAGACAAATC+TGG - chr1_3:60115447-60115466 None:intergenic 30.0%
!! TTTGTCTATGGAAGTATTGA+CGG + chr1_3:60115449-60115468 Msa0130070:intron 30.0%
TATGACAAAGTTGTAAGTAC+AGG + chr1_3:60115545-60115564 Msa0130070:CDS 30.0%
CTAAAAAATTGTATTGGAGG+AGG - chr1_3:60115870-60115889 None:intergenic 30.0%
GGGGAACTAAAAAATTGTAT+TGG - chr1_3:60115876-60115895 None:intergenic 30.0%
!!! TTTTTTAGTTCCCCCAAATT+AGG + chr1_3:60115882-60115901 Msa0130070:intron 30.0%
!!! TTTTTAGTTCCCCCAAATTA+GGG + chr1_3:60115883-60115902 Msa0130070:intron 30.0%
ATACAAAATCCCCCTAATTT+GGG - chr1_3:60115897-60115916 None:intergenic 30.0%
AATACAAAATCCCCCTAATT+TGG - chr1_3:60115898-60115917 None:intergenic 30.0%
GAAGGAATAAATGGAAAGAA+TGG - chr1_3:60115964-60115983 None:intergenic 30.0%
! TTTTCTTTTAGGCTCTGTTT+GGG - chr1_3:60116026-60116045 None:intergenic 30.0%
! ATTTTCTTTTAGGCTCTGTT+TGG - chr1_3:60116027-60116046 None:intergenic 30.0%
AAATTTACAGCTAGGAAGTT+TGG + chr1_3:60116043-60116062 Msa0130070:intron 30.0%
AATACACTTACAGTCTCTAT+GGG - chr1_3:60116347-60116366 None:intergenic 30.0%
ATTATAGAAGTGGAAAAGTG+GGG - chr1_3:60116388-60116407 None:intergenic 30.0%
GAATTATAGAAGTGGAAAAG+TGG - chr1_3:60116390-60116409 None:intergenic 30.0%
!!! GAACATCTTTTTCAACAATG+TGG + chr1_3:60116454-60116473 Msa0130070:intron 30.0%
!!! TTTATTTTTTTCTGGGTCTC+TGG + chr1_3:60116634-60116653 Msa0130070:intron 30.0%
AAGTGTTATAGCATTATCAC+AGG + chr1_3:60116743-60116762 Msa0130070:CDS 30.0%
CATTATCACAGGTAAAATGT+TGG + chr1_3:60116754-60116773 Msa0130070:intron 30.0%
TAAGTGCAACAAATAGGATA+GGG + chr1_3:60116840-60116859 Msa0130070:intron 30.0%
TTCTTATAGCGAGACTATTA+TGG + chr1_3:60116971-60116990 Msa0130070:intron 30.0%
!! GTTTTGGCAAATTTAATGCA+GGG - chr1_3:60117157-60117176 None:intergenic 30.0%
!! AGTTTTGGCAAATTTAATGC+AGG - chr1_3:60117158-60117177 None:intergenic 30.0%
GCGAGATTAAAAGAAAAGTT+AGG - chr1_3:60117277-60117296 None:intergenic 30.0%
! TCTTTTAATCTCGCAATTTC+AGG + chr1_3:60117283-60117302 Msa0130070:intron 30.0%
ACATACAATTCCAATAACTG+GGG + chr1_3:60117315-60117334 Msa0130070:CDS 30.0%
!! TGTTTTTCATTTTTCTCCTG+TGG - chr1_3:60117354-60117373 None:intergenic 30.0%
AGGAGAAAAATGAAAAACAC+TGG + chr1_3:60117355-60117374 Msa0130070:CDS 30.0%
CATTATCATCATTTAGTGAG+TGG + chr1_3:60117401-60117420 Msa0130070:intron 30.0%
TTCATAAAATATGCCACACT+AGG + chr1_3:60117564-60117583 Msa0130070:intron 30.0%
GTAAACAAATGCAATAGAAG+TGG - chr1_3:60117680-60117699 None:intergenic 30.0%
ATGATTATGATCATCACCAT+TGG + chr1_3:60118050-60118069 Msa0130070:intron 30.0%
ATAACAATGACAATTGCCAA+TGG - chr1_3:60118069-60118088 None:intergenic 30.0%
!!! AGTTTTGTTGACAATTGTGT+TGG + chr1_3:60118311-60118330 Msa0130070:intron 30.0%
!! GTTTTGTTGACAATTGTGTT+GGG + chr1_3:60118312-60118331 Msa0130070:intron 30.0%
TTGAAGATTTCTTGATTGCA+GGG - chr1_3:60118403-60118422 None:intergenic 30.0%
ATTGAAGATTTCTTGATTGC+AGG - chr1_3:60118404-60118423 None:intergenic 30.0%
CAATCACTTTCATCTTCAAT+TGG + chr1_3:60118441-60118460 Msa0130070:intron 30.0%
! CATTCACTTTACATTTTCCT+TGG - chr1_3:60118628-60118647 None:intergenic 30.0%
!! TGAATGTGAATGCTTTGTTT+CGG + chr1_3:60118642-60118661 Msa0130070:three_prime_UTR 30.0%
!! AGTGATTATGATGCTAGTTT+TGG + chr1_3:60118702-60118721 Msa0130070:three_prime_UTR 30.0%
!!! CATGTCAAAAAAGTGTTTTG+AGG - chr1_3:60118766-60118785 None:intergenic 30.0%
GAAGGGAAAGAAAGTGAAAA+TGG - chr1_3:60106853-60106872 None:intergenic 35.0%
GATTGAGGTTGGAAATTGAA+GGG - chr1_3:60106870-60106889 None:intergenic 35.0%
AGATTGAGGTTGGAAATTGA+AGG - chr1_3:60106871-60106890 None:intergenic 35.0%
AAGTAGTAGATGAAGAAGGA+AGG - chr1_3:60106924-60106943 None:intergenic 35.0%
TGGAAAGTAGTAGATGAAGA+AGG - chr1_3:60106928-60106947 None:intergenic 35.0%
TTCAACAGAGGAAGAAGAAA+GGG - chr1_3:60106998-60107017 None:intergenic 35.0%
ATAAACCTGAGAAATGGAAG+TGG - chr1_3:60107025-60107044 None:intergenic 35.0%
TCACTCAATCTCTTATTGCT+TGG + chr1_3:60107206-60107225 Msa0130070:CDS 35.0%
!! ATTCAAAGAAGCATCTTTGC+TGG - chr1_3:60107272-60107291 None:intergenic 35.0%
GGTTGCATTTAGTGTATGTT+TGG + chr1_3:60107404-60107423 Msa0130070:intron 35.0%
!! GAAAATGGAAGTGGATTAAG+AGG - chr1_3:60107817-60107836 None:intergenic 35.0%
GAATCACTAACAGAGACAAA+TGG - chr1_3:60107858-60107877 None:intergenic 35.0%
CTATTTGTAATTGATAGGCG+AGG + chr1_3:60107967-60107986 Msa0130070:intron 35.0%
!! AAGCAATCAGAGGTATTTAG+CGG - chr1_3:60108095-60108114 None:intergenic 35.0%
CTATTCCTAAAAGCAATCAG+AGG - chr1_3:60108105-60108124 None:intergenic 35.0%
GTCCCTAAAATATATTCCCA+TGG + chr1_3:60108196-60108215 Msa0130070:intron 35.0%
CAACTATTAGGGGTTATATG+AGG - chr1_3:60108229-60108248 None:intergenic 35.0%
CTCATATAACCCCTAATAGT+TGG + chr1_3:60108227-60108246 Msa0130070:intron 35.0%
ATACCTTTCCCAACTATTAG+GGG - chr1_3:60108239-60108258 None:intergenic 35.0%
CATACCTTTCCCAACTATTA+GGG - chr1_3:60108240-60108259 None:intergenic 35.0%
TCATACCTTTCCCAACTATT+AGG - chr1_3:60108241-60108260 None:intergenic 35.0%
! CAGATTTCACCCTGTAATTT+TGG + chr1_3:60108288-60108307 Msa0130070:intron 35.0%
CTCAAATAGCTCCAGTAATT+TGG - chr1_3:60108360-60108379 None:intergenic 35.0%
CAAATTACTGGAGCTATTTG+AGG + chr1_3:60108358-60108377 Msa0130070:intron 35.0%
! CAAATTGATGGATCAGAATC+AGG - chr1_3:60108390-60108409 None:intergenic 35.0%
CTGATTCTGATCCATCAATT+TGG + chr1_3:60108388-60108407 Msa0130070:intron 35.0%
! TCTTCTTTTTGACAATGTGG+TGG + chr1_3:60108507-60108526 Msa0130070:intron 35.0%
ATCTCTTCTTAAATCCCAGT+TGG + chr1_3:60108647-60108666 Msa0130070:CDS 35.0%
CATAAATAACAATCGCCAAC+TGG - chr1_3:60108665-60108684 None:intergenic 35.0%
CATGTGCTTTGCACTATATT+TGG + chr1_3:60108840-60108859 Msa0130070:intron 35.0%
TGTAATCTTGTGTAAGTGTG+GGG + chr1_3:60108884-60108903 Msa0130070:intron 35.0%
! AAAAGCTCATCTAAAACACC+AGG - chr1_3:60109011-60109030 None:intergenic 35.0%
AGAAAATATACTTGAGCGGT+AGG - chr1_3:60109098-60109117 None:intergenic 35.0%
AAAAATTGTTCCTCTTGAGG+AGG + chr1_3:60109259-60109278 Msa0130070:CDS 35.0%
AACTAAAGGGCCAAAAAGTT+GGG + chr1_3:60109298-60109317 Msa0130070:CDS 35.0%
CTAATGATCCATATGCTAGA+GGG + chr1_3:60109390-60109409 Msa0130070:CDS 35.0%
TTAAGCAGACTTTCATCAGA+TGG + chr1_3:60109534-60109553 Msa0130070:intron 35.0%
!! GGCATACACATGTTTTTCAA+AGG - chr1_3:60109738-60109757 None:intergenic 35.0%
!!! TGTCTGATTTTTAGTTCTCC+TGG + chr1_3:60109830-60109849 Msa0130070:intron 35.0%
TAAAGATATCTGGAGAAACC+AGG - chr1_3:60109851-60109870 None:intergenic 35.0%
TGGTTTCTCCAGATATCTTT+AGG + chr1_3:60109850-60109869 Msa0130070:intron 35.0%
!! CACTTAATAGCTTTAGAGCA+AGG - chr1_3:60109993-60110012 None:intergenic 35.0%
ACTGTATGGCAATAAGCAAA+AGG - chr1_3:60110047-60110066 None:intergenic 35.0%
TTATCTTGCCTTCACTTTGA+CGG + chr1_3:60110105-60110124 Msa0130070:CDS 35.0%
TTGCCAACATTTCAATTTGC+TGG + chr1_3:60110350-60110369 Msa0130070:CDS 35.0%
! TGCCAACATTTCAATTTGCT+GGG + chr1_3:60110351-60110370 Msa0130070:CDS 35.0%
AAAGAGAACTGGAGAAATGT+TGG + chr1_3:60110386-60110405 Msa0130070:CDS 35.0%
!!! GCGAAAAAGGTTTTATTGAG+TGG - chr1_3:60110432-60110451 None:intergenic 35.0%
AGGGAGTTTAATTGCGAAAA+AGG - chr1_3:60110445-60110464 None:intergenic 35.0%
CTTGAAAGATGTTTGAAGGA+GGG - chr1_3:60110464-60110483 None:intergenic 35.0%
GTTCCTTGAAAGATGTTTGA+AGG - chr1_3:60110468-60110487 None:intergenic 35.0%
AGAAATGCCTACATAGACAT+AGG - chr1_3:60110710-60110729 None:intergenic 35.0%
TGTCTATGTAGGCATTTCTA+AGG + chr1_3:60110711-60110730 Msa0130070:intron 35.0%
AGCTATGCAAGTAATCCAAA+TGG + chr1_3:60111026-60111045 Msa0130070:CDS 35.0%
GTAATGCCATTGTCTATTGT+TGG + chr1_3:60111163-60111182 Msa0130070:intron 35.0%
TACTGTCTACAATCATTTGC+AGG + chr1_3:60111272-60111291 Msa0130070:CDS 35.0%
ACTGTCTACAATCATTTGCA+GGG + chr1_3:60111273-60111292 Msa0130070:CDS 35.0%
TACAATCATTTGCAGGGAAA+TGG + chr1_3:60111279-60111298 Msa0130070:CDS 35.0%
ACAATCATTTGCAGGGAAAT+GGG + chr1_3:60111280-60111299 Msa0130070:CDS 35.0%
AGGACAGAATGTTCATCAAA+GGG - chr1_3:60111306-60111325 None:intergenic 35.0%
AAGGACAGAATGTTCATCAA+AGG - chr1_3:60111307-60111326 None:intergenic 35.0%
TGAACATTCTGTCCTTGATA+AGG + chr1_3:60111311-60111330 Msa0130070:CDS 35.0%
GATAATTCCTGACCTTATCA+AGG - chr1_3:60111326-60111345 None:intergenic 35.0%
TTCCAGGTTACTATCTAAGA+AGG + chr1_3:60111486-60111505 Msa0130070:CDS 35.0%
TTCCTTCTTAGATAGTAACC+TGG - chr1_3:60111491-60111510 None:intergenic 35.0%
TATCTAAGAAGGAACACAGA+TGG + chr1_3:60111497-60111516 Msa0130070:CDS 35.0%
! GGGAAAGTATAATTAAGGTG+AGG - chr1_3:60111932-60111951 None:intergenic 35.0%
AAAAGAACTTCAGCAGTTTC+TGG + chr1_3:60112222-60112241 Msa0130070:intron 35.0%
ACCCATAATCCAAAATCAGA+GGG - chr1_3:60112248-60112267 None:intergenic 35.0%
AACCCATAATCCAAAATCAG+AGG - chr1_3:60112249-60112268 None:intergenic 35.0%
AATGCATGACAAGGCTAATA+TGG + chr1_3:60112376-60112395 Msa0130070:intron 35.0%
! TAATATGGTTGGTCATAACC+TGG + chr1_3:60112391-60112410 Msa0130070:intron 35.0%
GTCAAAATAAAGCTGAGAAC+TGG - chr1_3:60112438-60112457 None:intergenic 35.0%
AAAGAAAAGGATGGAGTTGA+TGG + chr1_3:60112600-60112619 Msa0130070:CDS 35.0%
AGACAACATGTGAATGAAGA+GGG - chr1_3:60112709-60112728 None:intergenic 35.0%
AAGACAACATGTGAATGAAG+AGG - chr1_3:60112710-60112729 None:intergenic 35.0%
AAAACAGATATGGTGAAGGA+TGG + chr1_3:60112768-60112787 Msa0130070:intron 35.0%
AAACAGATATGGTGAAGGAT+GGG + chr1_3:60112769-60112788 Msa0130070:intron 35.0%
TTTGGTGAAGTTGCCAAAAA+TGG + chr1_3:60112794-60112813 Msa0130070:CDS 35.0%
TTGGTGAAGTTGCCAAAAAT+GGG + chr1_3:60112795-60112814 Msa0130070:CDS 35.0%
AATCTTGCTGGAACACAAAT+TGG + chr1_3:60112842-60112861 Msa0130070:CDS 35.0%
ATCTTGCTGGAACACAAATT+GGG + chr1_3:60112843-60112862 Msa0130070:CDS 35.0%
CATGTACAAGATAGAACTTC+TGG + chr1_3:60112931-60112950 Msa0130070:intron 35.0%
CGATGTAAGTTCAACTGATA+TGG + chr1_3:60113022-60113041 Msa0130070:intron 35.0%
AATAATTATCAGTAGGCCAC+AGG - chr1_3:60113366-60113385 None:intergenic 35.0%
GGATACAGAAAACATCTAAG+GGG - chr1_3:60113414-60113433 None:intergenic 35.0%
AAATGGGCATCTAATAGGAA+TGG - chr1_3:60113435-60113454 None:intergenic 35.0%
ATTGCATGCAAGCACTAAAA+GGG - chr1_3:60113549-60113568 None:intergenic 35.0%
AATTGCATGCAAGCACTAAA+AGG - chr1_3:60113550-60113569 None:intergenic 35.0%
AAAATATCAAGTTTGCCAGC+AGG - chr1_3:60113771-60113790 None:intergenic 35.0%
GTCTGTTTCAGCATTTGAAT+AGG + chr1_3:60113853-60113872 Msa0130070:intron 35.0%
! TTCTCTGTGCAAAATTTTGG+AGG + chr1_3:60113938-60113957 Msa0130070:intron 35.0%
! TCTCTGTGCAAAATTTTGGA+GGG + chr1_3:60113939-60113958 Msa0130070:intron 35.0%
TACCAAGTATCCATCTTAAG+GGG - chr1_3:60114091-60114110 None:intergenic 35.0%
CTACCAAGTATCCATCTTAA+GGG - chr1_3:60114092-60114111 None:intergenic 35.0%
CGATCTGCATATACATTTGA+CGG + chr1_3:60114153-60114172 Msa0130070:intron 35.0%
GATCTGCATATACATTTGAC+GGG + chr1_3:60114154-60114173 Msa0130070:intron 35.0%
TTGATCGGAATAGTGATAAC+AGG - chr1_3:60114340-60114359 None:intergenic 35.0%
GTTTATTAGATTGGAATGGC+TGG + chr1_3:60114390-60114409 Msa0130070:intron 35.0%
ATTCCAATAGACATAGCAAG+TGG - chr1_3:60114473-60114492 None:intergenic 35.0%
TTTATTCTGCTGAGAATGGA+TGG + chr1_3:60114696-60114715 Msa0130070:intron 35.0%
! GGAGAGAACCAAAATTTTCT+TGG - chr1_3:60114809-60114828 None:intergenic 35.0%
AAACTCAAGATTCATGAGTC+AGG - chr1_3:60115115-60115134 None:intergenic 35.0%
CATGAATCTTGAGTTTGTAG+TGG + chr1_3:60115119-60115138 Msa0130070:intron 35.0%
! AATCTTGAGTTTGTAGTGGA+GGG + chr1_3:60115123-60115142 Msa0130070:intron 35.0%
TCTCACCTCGAATATAGATA+TGG + chr1_3:60115207-60115226 Msa0130070:intron 35.0%
TTTGGCCATATCTATATTCG+AGG - chr1_3:60115215-60115234 None:intergenic 35.0%
TTAGGAATCGACGATTACTT+TGG - chr1_3:60115233-60115252 None:intergenic 35.0%
!! GTAATCGTCGATTCCTAATA+AGG + chr1_3:60115235-60115254 Msa0130070:intron 35.0%
CAATGGCAGTAGTAGATAAA+TGG + chr1_3:60115510-60115529 Msa0130070:CDS 35.0%
! GTTCTTGAAGTATCAAACTG+AGG + chr1_3:60115603-60115622 Msa0130070:intron 35.0%
!!! TTTTAGTTCCCCCAAATTAG+GGG + chr1_3:60115884-60115903 Msa0130070:intron 35.0%
TACAAAATCCCCCTAATTTG+GGG - chr1_3:60115896-60115915 None:intergenic 35.0%
! ATTTTATCAGGTGAAAGGGT+CGG + chr1_3:60116277-60116296 Msa0130070:intron 35.0%
!! TCGGAAGTATTAACATATGG+TGG + chr1_3:60116296-60116315 Msa0130070:CDS 35.0%
!! CGGAAGTATTAACATATGGT+GGG + chr1_3:60116297-60116316 Msa0130070:CDS 35.0%
ATACACTTACAGTCTCTATG+GGG - chr1_3:60116346-60116365 None:intergenic 35.0%
GAATACACTTACAGTCTCTA+TGG - chr1_3:60116348-60116367 None:intergenic 35.0%
TAAGCTCACAATGTCAAAGA+GGG - chr1_3:60116563-60116582 None:intergenic 35.0%
TTAAGCTCACAATGTCAAAG+AGG - chr1_3:60116564-60116583 None:intergenic 35.0%
CTTTGACATTGTGAGCTTAA+AGG + chr1_3:60116564-60116583 Msa0130070:CDS 35.0%
! CTATAACACTTGTTGCCAAA+TGG - chr1_3:60116734-60116753 None:intergenic 35.0%
CTTCAGTAAGTGCAACAAAT+AGG + chr1_3:60116834-60116853 Msa0130070:intron 35.0%
GTAAGTGCAACAAATAGGAT+AGG + chr1_3:60116839-60116858 Msa0130070:intron 35.0%
TCATCACCAGAGTGAAAAAA+TGG - chr1_3:60117026-60117045 None:intergenic 35.0%
!! TTTTCATTTTTCTCCTGTGG+AGG - chr1_3:60117351-60117370 None:intergenic 35.0%
TCTTCAAATGCATGCCTTAA+CGG + chr1_3:60117424-60117443 Msa0130070:intron 35.0%
TAATTTCTAAGCGCACTTGT+TGG + chr1_3:60117535-60117554 Msa0130070:intron 35.0%
GTTGTTGCAGTTGTGATTTA+AGG + chr1_3:60117635-60117654 Msa0130070:intron 35.0%
TTTCAGAATGAAACCAAGAC+TGG + chr1_3:60117729-60117748 Msa0130070:intron 35.0%
AGAAATTGTCCATTGTAGCT+AGG - chr1_3:60117789-60117808 None:intergenic 35.0%
TCTTAAACCTGTTGCGTATA+AGG + chr1_3:60117806-60117825 Msa0130070:CDS 35.0%
AAGAATACCTTATACGCAAC+AGG - chr1_3:60117816-60117835 None:intergenic 35.0%
!! ATAGTGATGAGCATTGAAGA+TGG + chr1_3:60118194-60118213 Msa0130070:CDS 35.0%
TGAAAGTGATTGTACCTGAA+CGG - chr1_3:60118433-60118452 None:intergenic 35.0%
TCAAAATATGAGGCTTCTTC+TGG + chr1_3:60118559-60118578 Msa0130070:CDS 35.0%
!! GAATGTGAATGCTTTGTTTC+GGG + chr1_3:60118643-60118662 Msa0130070:three_prime_UTR 35.0%
TGATGGAAGAAGATTGAGGT+TGG - chr1_3:60106881-60106900 None:intergenic 40.0%
! GGAATGATGGAAGAAGATTG+AGG - chr1_3:60106885-60106904 None:intergenic 40.0%
AAGAAGAAGAAAGAGGTGGT+GGG - chr1_3:60106975-60106994 None:intergenic 40.0%
GAAAGGGAAGAAGAAGAAAG+AGG - chr1_3:60106982-60107001 None:intergenic 40.0%
GTTCAACAGAGGAAGAAGAA+AGG - chr1_3:60106999-60107018 None:intergenic 40.0%
ACAAACCACTTCCATTTCTC+AGG + chr1_3:60107017-60107036 Msa0130070:CDS 40.0%
AATTATGATTGCCCAGATGC+AGG + chr1_3:60107150-60107169 Msa0130070:intron 40.0%
AAGCATCTTTGCTGGAAAGT+AGG - chr1_3:60107264-60107283 None:intergenic 40.0%
!! TGTATGTAGCACCGATACTT+TGG + chr1_3:60107361-60107380 Msa0130070:intron 40.0%
CCGCTTTCAATCCAAAGTAT+CGG - chr1_3:60107375-60107394 None:intergenic 40.0%
CCGATACTTTGGATTGAAAG+CGG + chr1_3:60107372-60107391 Msa0130070:intron 40.0%
CGATACTTTGGATTGAAAGC+GGG + chr1_3:60107373-60107392 Msa0130070:intron 40.0%
!!! GAAGTGGATTAAGAGGGTTT+TGG - chr1_3:60107810-60107829 None:intergenic 40.0%
GGTGTATTACATTTGCAGGA+AGG - chr1_3:60108027-60108046 None:intergenic 40.0%
TAACCCCTAATAGTTGGGAA+AGG + chr1_3:60108233-60108252 Msa0130070:intron 40.0%
CTGAAAATAGCCCCTGTAAA+GGG - chr1_3:60108330-60108349 None:intergenic 40.0%
TCTGAAAATAGCCCCTGTAA+AGG - chr1_3:60108331-60108350 None:intergenic 40.0%
GAGAAATTTCCACACATTCG+AGG + chr1_3:60108585-60108604 Msa0130070:CDS 40.0%
AAAGCTTTCAATATGCCTCC+CGG + chr1_3:60108612-60108631 Msa0130070:CDS 40.0%
GATTTAATATCTGAACCGGG+AGG - chr1_3:60108630-60108649 None:intergenic 40.0%
! TATGTGCTATTGAAGACAGC+CGG - chr1_3:60108698-60108717 None:intergenic 40.0%
!! TAAGGTTGAAGAGTGTCCAT+AGG - chr1_3:60109143-60109162 None:intergenic 40.0%
TACATCTATAAGCACCCATC+AGG + chr1_3:60109224-60109243 Msa0130070:CDS 40.0%
TTATGGGATCATCTCCTGAT+GGG - chr1_3:60109241-60109260 None:intergenic 40.0%
TTTATGGGATCATCTCCTGA+TGG - chr1_3:60109242-60109261 None:intergenic 40.0%
ACGGTGTTTGGAGAACTAAA+GGG + chr1_3:60109285-60109304 Msa0130070:CDS 40.0%
GAACTAAAGGGCCAAAAAGT+TGG + chr1_3:60109297-60109316 Msa0130070:CDS 40.0%
! TAACAACCCTCCCAACTTTT+TGG - chr1_3:60109311-60109330 None:intergenic 40.0%
GCTAATGATCCATATGCTAG+AGG + chr1_3:60109389-60109408 Msa0130070:CDS 40.0%
TAAGCATACCCTCTAGCATA+TGG - chr1_3:60109401-60109420 None:intergenic 40.0%
TCCATCAGGTTTCAACTCAT+CGG - chr1_3:60109589-60109608 None:intergenic 40.0%
! ATGAGTTGAAACCTGATGGA+TGG + chr1_3:60109589-60109608 Msa0130070:CDS 40.0%
! TGAGTTGAAACCTGATGGAT+GGG + chr1_3:60109590-60109609 Msa0130070:CDS 40.0%
AAGGATTACCGTCAAAGTGA+AGG - chr1_3:60110116-60110135 None:intergenic 40.0%
TGTTGGCAATAGATGGACAT+GGG - chr1_3:60110339-60110358 None:intergenic 40.0%
ATGTTGGCAATAGATGGACA+TGG - chr1_3:60110340-60110359 None:intergenic 40.0%
!! GCCAACATTTCAATTTGCTG+GGG + chr1_3:60110352-60110371 Msa0130070:CDS 40.0%
ACCCCAGCAAATTGAAATGT+TGG - chr1_3:60110356-60110375 None:intergenic 40.0%
CCTTGAAAGATGTTTGAAGG+AGG - chr1_3:60110465-60110484 None:intergenic 40.0%
CCTCCTTCAAACATCTTTCA+AGG + chr1_3:60110462-60110481 Msa0130070:intron 40.0%
AAAGCTGCAAGATAGAAGGA+TGG - chr1_3:60110754-60110773 None:intergenic 40.0%
CACCATTCTGATAGATACGT+CGG + chr1_3:60110803-60110822 Msa0130070:intron 40.0%
TACCGACGTATCTATCAGAA+TGG - chr1_3:60110808-60110827 None:intergenic 40.0%
! AAAGGTACAACCCTGTTCTT+TGG + chr1_3:60110988-60111007 Msa0130070:intron 40.0%
AAGGTACAACCCTGTTCTTT+GGG + chr1_3:60110989-60111008 Msa0130070:intron 40.0%
TACTTGCATAGCTGCCTTTA+GGG - chr1_3:60111019-60111038 None:intergenic 40.0%
TTACTTGCATAGCTGCCTTT+AGG - chr1_3:60111020-60111039 None:intergenic 40.0%
! ATTGTACGGTTTGGACCATT+TGG - chr1_3:60111044-60111063 None:intergenic 40.0%
CGAAACTCAATTGTACGGTT+TGG - chr1_3:60111053-60111072 None:intergenic 40.0%
TGAGTTTCGTAAGATGGTTC+AGG + chr1_3:60111064-60111083 Msa0130070:CDS 40.0%
CAGTATCCAACACAACATGA+AGG - chr1_3:60111257-60111276 None:intergenic 40.0%
ATTCTGTCCTTGATAAGGTC+AGG + chr1_3:60111316-60111335 Msa0130070:intron 40.0%
! TGTTAGCCTATCTACTTCTG+TGG + chr1_3:60111438-60111457 Msa0130070:intron 40.0%
TTCACACCACAGAAGTAGAT+AGG - chr1_3:60111447-60111466 None:intergenic 40.0%
ACACTGGGCAGTCAATTATA+AGG + chr1_3:60111601-60111620 Msa0130070:CDS 40.0%
AACAACAACAACAACCACCA+CGG - chr1_3:60111649-60111668 None:intergenic 40.0%
TGGGTTCAGATTTGACCTTA+TGG + chr1_3:60112036-60112055 Msa0130070:CDS 40.0%
GGGTTCAGATTTGACCTTAT+GGG + chr1_3:60112037-60112056 Msa0130070:CDS 40.0%
! GCCCTCTGATTTTGGATTAT+GGG + chr1_3:60112244-60112263 Msa0130070:intron 40.0%
CATGACAAGGCTAATATGGT+TGG + chr1_3:60112380-60112399 Msa0130070:intron 40.0%
!! CTGAGAACTGGTGTTGTATA+TGG - chr1_3:60112426-60112445 None:intergenic 40.0%
GATTATTAAGCAGCATGTGG+TGG - chr1_3:60112888-60112907 None:intergenic 40.0%
TCACAAAACCCTGTTGAAGA+GGG - chr1_3:60113215-60113234 None:intergenic 40.0%
!! AAGACTAGTTTGCAATCCTG+TGG + chr1_3:60113347-60113366 Msa0130070:intron 40.0%
GTGGAAAATGGGCATCTAAT+AGG - chr1_3:60113440-60113459 None:intergenic 40.0%
!! ATCCTATTTCTGCAGCCTAA+TGG + chr1_3:60113599-60113618 Msa0130070:intron 40.0%
GTTCCATGATCATAGCCATT+AGG - chr1_3:60113617-60113636 None:intergenic 40.0%
ATCCATGCTTTCTGCATCAA+TGG + chr1_3:60113652-60113671 Msa0130070:CDS 40.0%
ATCCATTGATGCAGAAAGCA+TGG - chr1_3:60113657-60113676 None:intergenic 40.0%
! AATGGATCACATCCAGGTTT+TGG + chr1_3:60113670-60113689 Msa0130070:intron 40.0%
CTTACAAACTCCCCTTAAGA+TGG + chr1_3:60114078-60114097 Msa0130070:intron 40.0%
GCTACCAAGTATCCATCTTA+AGG - chr1_3:60114093-60114112 None:intergenic 40.0%
GCACACTAACTAAGAGAGAA+GGG - chr1_3:60114240-60114259 None:intergenic 40.0%
AGCACACTAACTAAGAGAGA+AGG - chr1_3:60114241-60114260 None:intergenic 40.0%
CTCTTAGTTAGTGTGCTTTG+TGG + chr1_3:60114244-60114263 Msa0130070:intron 40.0%
TTTGTACTAACCAACTCCCA+AGG + chr1_3:60114426-60114445 Msa0130070:CDS 40.0%
TGTCAATACCTCTTGTCCTT+GGG - chr1_3:60114445-60114464 None:intergenic 40.0%
ATGTCAATACCTCTTGTCCT+TGG - chr1_3:60114446-60114465 None:intergenic 40.0%
!! AGGACAAGAGGTATTGACAT+TGG + chr1_3:60114446-60114465 Msa0130070:intron 40.0%
GTGAATAAAAGGGAAACCAC+AGG - chr1_3:60114906-60114925 None:intergenic 40.0%
! TCACAGTTGCTTTCGAATTG+TGG + chr1_3:60115064-60115083 Msa0130070:intron 40.0%
! CACAGTTGCTTTCGAATTGT+GGG + chr1_3:60115065-60115084 Msa0130070:intron 40.0%
GAATCTTGAGTTTGTAGTGG+AGG + chr1_3:60115122-60115141 Msa0130070:intron 40.0%
TGGCAAGTGATGACAATGTT+AGG + chr1_3:60115161-60115180 Msa0130070:intron 40.0%
!! AGGATTGTCCAAGCCTTATT+AGG - chr1_3:60115251-60115270 None:intergenic 40.0%
TAAAGCTAGCTCAAGAGATG+AGG - chr1_3:60115271-60115290 None:intergenic 40.0%
GGTGGTCCAATAACAGATTT+AGG - chr1_3:60115345-60115364 None:intergenic 40.0%
AGGACTGAACATATAGAGTG+TGG - chr1_3:60115377-60115396 None:intergenic 40.0%
AACAATATTGTCTCGCGCTT+AGG - chr1_3:60115397-60115416 None:intergenic 40.0%
GCAGTAGTAGATAAATGGAG+AGG + chr1_3:60115515-60115534 Msa0130070:CDS 40.0%
GTAGTAGATAAATGGAGAGG+TGG + chr1_3:60115518-60115537 Msa0130070:CDS 40.0%
GACAAAGTTGTAAGTACAGG+TGG + chr1_3:60115548-60115567 Msa0130070:CDS 40.0%
! CTTGAAGTATCAAACTGAGG+TGG + chr1_3:60115606-60115625 Msa0130070:intron 40.0%
CGACTAGAATCAGAACTCTT+AGG + chr1_3:60115668-60115687 Msa0130070:intron 40.0%
AACTCTTAGGCTCTGTTTGT+GGG + chr1_3:60115681-60115700 Msa0130070:intron 40.0%
TATTGGAGGAGGAGTTTGAA+GGG - chr1_3:60115859-60115878 None:intergenic 40.0%
! TTTAGTTCCCCCAAATTAGG+GGG + chr1_3:60115885-60115904 Msa0130070:intron 40.0%
ACAAAATCCCCCTAATTTGG+GGG - chr1_3:60115895-60115914 None:intergenic 40.0%
TGGAAAGAATGGAGAGCTAT+GGG - chr1_3:60115953-60115972 None:intergenic 40.0%
ATGGAAAGAATGGAGAGCTA+TGG - chr1_3:60115954-60115973 None:intergenic 40.0%
GAGGGCTTGTAAAAAAAGGA+AGG - chr1_3:60115982-60116001 None:intergenic 40.0%
AAGGGAGGGCTTGTAAAAAA+AGG - chr1_3:60115986-60116005 None:intergenic 40.0%
TACATGCTCTATGGAGATCA+TGG + chr1_3:60116090-60116109 Msa0130070:intron 40.0%
!! GGGTCGGAAGTATTAACATA+TGG + chr1_3:60116293-60116312 Msa0130070:CDS 40.0%
GTATTCCATAGTATATCCCC+TGG + chr1_3:60116362-60116381 Msa0130070:intron 40.0%
TATTCACTTTCAGACTCCGT+CGG + chr1_3:60116677-60116696 Msa0130070:intron 40.0%
GAGATGCAGGATAAACCATT+TGG + chr1_3:60116716-60116735 Msa0130070:CDS 40.0%
TGCAACAAATAGGATAGGGT+AGG + chr1_3:60116844-60116863 Msa0130070:intron 40.0%
!!! GGCATACCATTTTTTCACTC+TGG + chr1_3:60117017-60117036 Msa0130070:CDS 40.0%
GATCGAGATTCATACAACTC+CGG + chr1_3:60117068-60117087 Msa0130070:CDS 40.0%
ATCGAGATTCATACAACTCC+GGG + chr1_3:60117069-60117088 Msa0130070:CDS 40.0%
AATTCCAATAACTGGGGTGT+TGG + chr1_3:60117321-60117340 Msa0130070:CDS 40.0%
TTCGTTAATCTGCACCGTTA+AGG - chr1_3:60117441-60117460 None:intergenic 40.0%
CAATGTAATGCTGGGTAAGT+CGG - chr1_3:60117593-60117612 None:intergenic 40.0%
GATTGACATCCTAGCTACAA+TGG + chr1_3:60117777-60117796 Msa0130070:CDS 40.0%
! AGCATTGAAGATGGTCATGA+TGG + chr1_3:60118203-60118222 Msa0130070:CDS 40.0%
GATTTCTTGATTGCAGGGAA+GGG - chr1_3:60118398-60118417 None:intergenic 40.0%
AGATTTCTTGATTGCAGGGA+AGG - chr1_3:60118399-60118418 None:intergenic 40.0%
GAAAGTGATTGTACCTGAAC+GGG - chr1_3:60118432-60118451 None:intergenic 40.0%
! AAATGAGGCGTTTGATTCCA+TGG + chr1_3:60118489-60118508 Msa0130070:intron 40.0%
!! GTTGTTTTGTTGTGTCTCGA+AGG + chr1_3:60118581-60118600 Msa0130070:CDS 40.0%
!!! GATGCTAGTTTTGGTTCATC+AGG + chr1_3:60118711-60118730 Msa0130070:three_prime_UTR 40.0%
!!! CTAGTTTTGGTTCATCAGGA+TGG + chr1_3:60118715-60118734 Msa0130070:three_prime_UTR 40.0%
! GAAGAAGGAAGGTACAGTGA+AGG - chr1_3:60106913-60106932 None:intergenic 45.0%
GAATGCGAAGTGAAGTAGTG+TGG - chr1_3:60106948-60106967 None:intergenic 45.0%
AGAAGAAGAAAGAGGTGGTG+GGG - chr1_3:60106974-60106993 None:intergenic 45.0%
GAAGAAGAAGAAAGAGGTGG+TGG - chr1_3:60106976-60106995 None:intergenic 45.0%
AGGGAAGAAGAAGAAAGAGG+TGG - chr1_3:60106979-60106998 None:intergenic 45.0%
!! GGAAGTGGTTTGTTCAACAG+AGG - chr1_3:60107010-60107029 None:intergenic 45.0%
GATTGAAAGCGGGTCATATG+TGG + chr1_3:60107383-60107402 Msa0130070:intron 45.0%
AAGCTTGAAGAGGATAAGGC+TGG + chr1_3:60108001-60108020 Msa0130070:CDS 45.0%
GGTGAGAGAGCGATAGTTTA+TGG - chr1_3:60108142-60108161 None:intergenic 45.0%
CTATCGCTCTCTCACCAATT+TGG + chr1_3:60108146-60108165 Msa0130070:intron 45.0%
GATCCATCAATTTGGTCCCT+CGG + chr1_3:60108396-60108415 Msa0130070:intron 45.0%
TAACCGAGGGACCAAATTGA+TGG - chr1_3:60108402-60108421 None:intergenic 45.0%
AATTTGGTCCCTCGGTTAAC+TGG + chr1_3:60108404-60108423 Msa0130070:intron 45.0%
! TCCCTCGGTTAACTGGTTTA+GGG + chr1_3:60108411-60108430 Msa0130070:intron 45.0%
TCCCTAAACCAGTTAACCGA+GGG - chr1_3:60108415-60108434 None:intergenic 45.0%
GGCTGTCTTCAATAGCACAT+AGG + chr1_3:60108697-60108716 Msa0130070:intron 45.0%
CAGCTGAGCAAAATCACGAA+AGG - chr1_3:60108953-60108972 None:intergenic 45.0%
CTCAGCTGATGAGAAATGCA+GGG + chr1_3:60108965-60108984 Msa0130070:intron 45.0%
!! TGTACTGGTTTGCAGTTACC+TGG + chr1_3:60108990-60109009 Msa0130070:CDS 45.0%
CACGGTGTTTGGAGAACTAA+AGG + chr1_3:60109284-60109303 Msa0130070:CDS 45.0%
TAAAGGGCCAAAAAGTTGGG+AGG + chr1_3:60109301-60109320 Msa0130070:CDS 45.0%
AAAGGGCCAAAAAGTTGGGA+GGG + chr1_3:60109302-60109321 Msa0130070:CDS 45.0%
GCAGACTTTCATCAGATGGA+AGG + chr1_3:60109538-60109557 Msa0130070:intron 45.0%
! TCCGATGAGTTGAAACCTGA+TGG + chr1_3:60109585-60109604 Msa0130070:CDS 45.0%
! ACCTGATGGATGGGAAAATC+TGG + chr1_3:60109599-60109618 Msa0130070:CDS 45.0%
GGCTTATATTGCTTGCCAGT+CGG + chr1_3:60109871-60109890 Msa0130070:intron 45.0%
GAGAGATCATTGGCACTGTA+TGG - chr1_3:60110061-60110080 None:intergenic 45.0%
AGATAACCACCGCGAAATTC+AGG - chr1_3:60110091-60110110 None:intergenic 45.0%
GCTATACTTTCCGCTGTCTT+CGG + chr1_3:60110637-60110656 Msa0130070:intron 45.0%
CTATACTTTCCGCTGTCTTC+GGG + chr1_3:60110638-60110657 Msa0130070:intron 45.0%
TATACTTTCCGCTGTCTTCG+GGG + chr1_3:60110639-60110658 Msa0130070:intron 45.0%
TCTGATAGATACGTCGGTAC+TGG + chr1_3:60110809-60110828 Msa0130070:intron 45.0%
TGTTGCTGATCTGAATCAGG+TGG - chr1_3:60110843-60110862 None:intergenic 45.0%
! GCTTGTTGCTGATCTGAATC+AGG - chr1_3:60110846-60110865 None:intergenic 45.0%
GTCTGAATTGTCCATCACTG+TGG - chr1_3:60110925-60110944 None:intergenic 45.0%
AGGTACAACCCTGTTCTTTG+GGG + chr1_3:60110990-60111009 Msa0130070:intron 45.0%
TTGCAGGCTCTTAGTCATAC+TGG + chr1_3:60111231-60111250 Msa0130070:intron 45.0%
!! TACTGGCCTTCATGTTGTGT+TGG + chr1_3:60111248-60111267 Msa0130070:CDS 45.0%
TACTGCGAGTGAGCATTCTA+TGG + chr1_3:60111550-60111569 Msa0130070:CDS 45.0%
TCCTCGATGATCTTGTACAC+TGG + chr1_3:60111585-60111604 Msa0130070:CDS 45.0%
CCTCGATGATCTTGTACACT+GGG + chr1_3:60111586-60111605 Msa0130070:CDS 45.0%
GTTTATATCTTCACTCGCCG+TGG + chr1_3:60111629-60111648 Msa0130070:intron 45.0%
!!! AGTTTCTGGCCCTCTGATTT+TGG + chr1_3:60112236-60112255 Msa0130070:intron 45.0%
! GGCCCTCTGATTTTGGATTA+TGG + chr1_3:60112243-60112262 Msa0130070:intron 45.0%
TGATTTCGTGACATGGATGC+AGG + chr1_3:60112545-60112564 Msa0130070:intron 45.0%
TATGGTGAAGGATGGGACTT+TGG + chr1_3:60112776-60112795 Msa0130070:CDS 45.0%
AAGTTGCCAAAAATGGGCGT+GGG + chr1_3:60112801-60112820 Msa0130070:CDS 45.0%
! GTTTATCCCACGCCCATTTT+TGG - chr1_3:60112810-60112829 None:intergenic 45.0%
GCTTCTCAGTTCAATCTTGC+TGG + chr1_3:60112830-60112849 Msa0130070:CDS 45.0%
TTGCTGGAACACAAATTGGG+AGG + chr1_3:60112846-60112865 Msa0130070:CDS 45.0%
TGGAACACAAATTGGGAGGT+AGG + chr1_3:60112850-60112869 Msa0130070:intron 45.0%
! AAGCAGCATGTGGTGGAAAA+AGG - chr1_3:60112881-60112900 None:intergenic 45.0%
AAATGGAGATCCACCAAGCA+CGG - chr1_3:60113187-60113206 None:intergenic 45.0%
GTCACAAAACCCTGTTGAAG+AGG - chr1_3:60113216-60113235 None:intergenic 45.0%
!! CTTCAACAGGGTTTTGTGAC+TGG + chr1_3:60113216-60113235 Msa0130070:CDS 45.0%
!!! TGTGACTGGTCTACTTTTGC+AGG + chr1_3:60113230-60113249 Msa0130070:CDS 45.0%
ATCAAGAAGCTTGAGAAGGG+AGG - chr1_3:60113298-60113317 None:intergenic 45.0%
AGCCATTAGGCTGCAGAAAT+AGG - chr1_3:60113604-60113623 None:intergenic 45.0%
CAGCCTAATGGCTATGATCA+TGG + chr1_3:60113611-60113630 Msa0130070:intron 45.0%
TGCATCAATGGATCACATCC+AGG + chr1_3:60113664-60113683 Msa0130070:CDS 45.0%
TTGAATATTGCAGTGCCTGC+TGG + chr1_3:60113753-60113772 Msa0130070:intron 45.0%
CTCCCCTTAAGATGGATACT+TGG + chr1_3:60114086-60114105 Msa0130070:intron 45.0%
!! GGTCCACTTGCTATGTCTAT+TGG + chr1_3:60114467-60114486 Msa0130070:intron 45.0%
TGCTGAGAATGGATGGTTGT+TGG + chr1_3:60114703-60114722 Msa0130070:intron 45.0%
GCTGAGAATGGATGGTTGTT+GGG + chr1_3:60114704-60114723 Msa0130070:intron 45.0%
CTGAGAATGGATGGTTGTTG+GGG + chr1_3:60114705-60114724 Msa0130070:intron 45.0%
AAGCTCTCGAATTCTTGGAG+GGG - chr1_3:60114830-60114849 None:intergenic 45.0%
CAAGCTCTCGAATTCTTGGA+GGG - chr1_3:60114831-60114850 None:intergenic 45.0%
AGACCAAGCTCTCGAATTCT+TGG - chr1_3:60114835-60114854 None:intergenic 45.0%
!! CGTCGATTCCTAATAAGGCT+TGG + chr1_3:60115240-60115259 Msa0130070:intron 45.0%
AGAGTGTGGTGAAATATGGG+TGG - chr1_3:60115363-60115382 None:intergenic 45.0%
GCGCGAGACAATATTGTTGT+CGG + chr1_3:60115399-60115418 Msa0130070:intron 45.0%
! TCTGGAGCATGGACATATAC+AGG - chr1_3:60115429-60115448 None:intergenic 45.0%
! CCATAGACAAATCTGGAGCA+TGG - chr1_3:60115440-60115459 None:intergenic 45.0%
CCATGCTCCAGATTTGTCTA+TGG + chr1_3:60115437-60115456 Msa0130070:intron 45.0%
! GTTGAGGTGTTAGAGAAGAG+TGG + chr1_3:60115484-60115503 Msa0130070:intron 45.0%
TTAGAGAAGAGTGGCAGCAA+TGG + chr1_3:60115493-60115512 Msa0130070:intron 45.0%
GAACTCTTAGGCTCTGTTTG+TGG + chr1_3:60115680-60115699 Msa0130070:intron 45.0%
TTAGGCTCTGTTTGTGGGTT+TGG + chr1_3:60115686-60115705 Msa0130070:intron 45.0%
! GGAGGAGTTTGAAGGGTTTT+GGG - chr1_3:60115852-60115871 None:intergenic 45.0%
! AGGAGGAGTTTGAAGGGTTT+TGG - chr1_3:60115853-60115872 None:intergenic 45.0%
GTATTGGAGGAGGAGTTTGA+AGG - chr1_3:60115860-60115879 None:intergenic 45.0%
AAAGAATGGAGAGCTATGGG+AGG - chr1_3:60115950-60115969 None:intergenic 45.0%
!!! CTCTGTTTGGGAGTTTTGAG+GGG - chr1_3:60116014-60116033 None:intergenic 45.0%
!! GCTCTGTTTGGGAGTTTTGA+GGG - chr1_3:60116015-60116034 None:intergenic 45.0%
TAGATACCTGCTTGCAGCTT+TGG + chr1_3:60116146-60116165 Msa0130070:intron 45.0%
AACAAACCAAAGCTGCAAGC+AGG - chr1_3:60116155-60116174 None:intergenic 45.0%
TACAGTCTCTATGGGGTATG+AGG - chr1_3:60116339-60116358 None:intergenic 45.0%
CAACAATGTGGCTGTCAAAG+AGG + chr1_3:60116466-60116485 Msa0130070:intron 45.0%
GATACTCCGCTCAAAATCAC+TGG + chr1_3:60117046-60117065 Msa0130070:CDS 45.0%
! CTCGATCCAGTGATTTTGAG+CGG - chr1_3:60117055-60117074 None:intergenic 45.0%
TCGAGATTCATACAACTCCG+GGG + chr1_3:60117070-60117089 Msa0130070:CDS 45.0%
ATTCATACAACTCCGGGGAT+TGG + chr1_3:60117075-60117094 Msa0130070:CDS 45.0%
ATACCTGTTGAACCAATCCC+CGG - chr1_3:60117090-60117109 None:intergenic 45.0%
AAGACCAACACCCCAGTTAT+TGG - chr1_3:60117328-60117347 None:intergenic 45.0%
GCTAGGATGTCAATCCTTTG+AGG - chr1_3:60117772-60117791 None:intergenic 45.0%
ATGGTCATGATGGCTTTCCT+GGG + chr1_3:60118213-60118232 Msa0130070:CDS 45.0%
TCTTCAATTGCATCCCGTTC+AGG + chr1_3:60118416-60118435 Msa0130070:CDS 45.0%
CTACAACACAGTACACACCA+TGG - chr1_3:60118509-60118528 None:intergenic 45.0%
CATGGTGTGTACTGTGTTGT+AGG + chr1_3:60118507-60118526 Msa0130070:intron 45.0%
!! TGAATGCTTTGTTTCGGGTG+TGG + chr1_3:60118648-60118667 Msa0130070:three_prime_UTR 45.0%
!!! GTTTTGAGGTGTGACTGTGA+AGG - chr1_3:60118752-60118771 None:intergenic 45.0%
!!! TCTTTTATTAAAAAAAAAAT+TGG - chr1_3:60112276-60112295 None:intergenic 5.0%
AGTGAAGGACGAGGGAATGA+TGG - chr1_3:60106898-60106917 None:intergenic 50.0%
! GAAGGTACAGTGAAGGACGA+GGG - chr1_3:60106906-60106925 None:intergenic 50.0%
TCAGACCTCGCCCAAATTAC+TGG + chr1_3:60108346-60108365 Msa0130070:intron 50.0%
TAGCTCCAGTAATTTGGGCG+AGG - chr1_3:60108354-60108373 None:intergenic 50.0%
! GTCCCTCGGTTAACTGGTTT+AGG + chr1_3:60108410-60108429 Msa0130070:intron 50.0%
GTCCCTAAACCAGTTAACCG+AGG - chr1_3:60108416-60108435 None:intergenic 50.0%
GCTTTGTAGCCTCGAATGTG+TGG - chr1_3:60108597-60108616 None:intergenic 50.0%
GCTCAGCTGATGAGAAATGC+AGG + chr1_3:60108964-60108983 Msa0130070:intron 50.0%
GAGAAATGCAGGGACTGTAC+TGG + chr1_3:60108975-60108994 Msa0130070:CDS 50.0%
! TCTGAGAAAAGTGCACCGAG+TGG - chr1_3:60109047-60109066 None:intergenic 50.0%
!!! ACTCGGTGCACTTTTCTCAG+AGG + chr1_3:60109046-60109065 Msa0130070:CDS 50.0%
GTTCCTCTTGAGGAGGAACA+CGG + chr1_3:60109266-60109285 Msa0130070:CDS 50.0%
TTGAGGAGGAACACGGTGTT+TGG + chr1_3:60109273-60109292 Msa0130070:CDS 50.0%
!! TTTTCAACCCGCGAAGTGCT+CGG - chr1_3:60109362-60109381 None:intergenic 50.0%
! GCCAGATTTTCCCATCCATC+AGG - chr1_3:60109603-60109622 None:intergenic 50.0%
! GTGTATCGACAACTACCGAC+TGG - chr1_3:60109889-60109908 None:intergenic 50.0%
AGGCTGCACAGAGAGATCAT+TGG - chr1_3:60110071-60110090 None:intergenic 50.0%
TCTGTGCAGCCTGAATTTCG+CGG + chr1_3:60110079-60110098 Msa0130070:CDS 50.0%
GAAAGTTTCCCCGAAGACAG+CGG - chr1_3:60110650-60110669 None:intergenic 50.0%
TAGGGACACCCCAAAGAACA+GGG - chr1_3:60111001-60111020 None:intergenic 50.0%
TTAGGGACACCCCAAAGAAC+AGG - chr1_3:60111002-60111021 None:intergenic 50.0%
!! GTTCTTTGGGGTGTCCCTAA+AGG + chr1_3:60111002-60111021 Msa0130070:CDS 50.0%
CCCAGTGTACAAGATCATCG+AGG - chr1_3:60111589-60111608 None:intergenic 50.0%
TATATCTTCACTCGCCGTGG+TGG + chr1_3:60111632-60111651 Msa0130070:intron 50.0%
! GGTTGGTCATAACCTGGCTA+AGG + chr1_3:60112397-60112416 Msa0130070:intron 50.0%
TGGTCATAACCTGGCTAAGG+TGG + chr1_3:60112400-60112419 Msa0130070:intron 50.0%
TGTATATGGCCACCTTAGCC+AGG - chr1_3:60112412-60112431 None:intergenic 50.0%
GAAGTTGCCAAAAATGGGCG+TGG + chr1_3:60112800-60112819 Msa0130070:CDS 50.0%
CGAATTCGTGATTCCGTGCT+TGG + chr1_3:60113171-60113190 Msa0130070:CDS 50.0%
ATTCGTGATTCCGTGCTTGG+TGG + chr1_3:60113174-60113193 Msa0130070:CDS 50.0%
! GTGCTTGGTGGATCTCCATT+TGG + chr1_3:60113186-60113205 Msa0130070:CDS 50.0%
TGTTGAAGAGGGTGGCCAAA+TGG - chr1_3:60113204-60113223 None:intergenic 50.0%
ATTTGGCCACCCTCTTCAAC+AGG + chr1_3:60113203-60113222 Msa0130070:CDS 50.0%
TTTGGCCACCCTCTTCAACA+GGG + chr1_3:60113204-60113223 Msa0130070:CDS 50.0%
CAAAACCCTGTTGAAGAGGG+TGG - chr1_3:60113212-60113231 None:intergenic 50.0%
AAGCTTGAGAAGGGAGGAGA+AGG - chr1_3:60113292-60113311 None:intergenic 50.0%
AACCAACTCCCAAGGACAAG+AGG + chr1_3:60114434-60114453 Msa0130070:CDS 50.0%
TACCTCTTGTCCTTGGGAGT+TGG - chr1_3:60114439-60114458 None:intergenic 50.0%
GTTGTTGGGGAAGTAGCTGA+TGG + chr1_3:60114718-60114737 Msa0130070:intron 50.0%
GGGAAGTAGCTGATGGAAAC+TGG + chr1_3:60114725-60114744 Msa0130070:intron 50.0%
CCAAGCTCTCGAATTCTTGG+AGG - chr1_3:60114832-60114851 None:intergenic 50.0%
CCTCCAAGAATTCGAGAGCT+TGG + chr1_3:60114829-60114848 Msa0130070:intron 50.0%
AAGTAACCCACAACAGCCTG+TGG + chr1_3:60114887-60114906 Msa0130070:intron 50.0%
GAATTGTGGGCTCTGCAATG+TGG + chr1_3:60115078-60115097 Msa0130070:intron 50.0%
! CTTGAGTTTGTAGTGGAGGG+CGG + chr1_3:60115126-60115145 Msa0130070:intron 50.0%
GGAGCATGGACATATACAGG+TGG - chr1_3:60115426-60115445 None:intergenic 50.0%
! GTATTGACGGTAGCTGATGC+TGG + chr1_3:60115462-60115481 Msa0130070:intron 50.0%
! AGTACAGGTGGTAGCGATGA+TGG + chr1_3:60115560-60115579 Msa0130070:CDS 50.0%
GCTCTGTTTGTGGGTTTGGA+GGG + chr1_3:60115690-60115709 Msa0130070:intron 50.0%
CTCTGTTTGTGGGTTTGGAG+GGG + chr1_3:60115691-60115710 Msa0130070:intron 50.0%
TTTGTGGGTTTGGAGGGGTA+GGG + chr1_3:60115696-60115715 Msa0130070:intron 50.0%
!!! GAGTTTTGAGGGGAGGAGAA+GGG - chr1_3:60116004-60116023 None:intergenic 50.0%
!!! TGTTTGGGAGTTTTGAGGGG+AGG - chr1_3:60116011-60116030 None:intergenic 50.0%
! GGCTCTGTTTGGGAGTTTTG+AGG - chr1_3:60116016-60116035 None:intergenic 50.0%
ACAGCTAGGAAGTTTGGACC+AGG + chr1_3:60116049-60116068 Msa0130070:intron 50.0%
GGGTATGAGGCAAATGCAAC+GGG - chr1_3:60116326-60116345 None:intergenic 50.0%
GGGGTATGAGGCAAATGCAA+CGG - chr1_3:60116327-60116346 None:intergenic 50.0%
TCAGCCACACTGATATCCGA+CGG - chr1_3:60116696-60116715 None:intergenic 50.0%
!! TCCTTTGAGGCCTGAAGGAT+GGG - chr1_3:60117759-60117778 None:intergenic 50.0%
!! ATCCTTTGAGGCCTGAAGGA+TGG - chr1_3:60117760-60117779 None:intergenic 50.0%
!! GTCAATCCTTTGAGGCCTGA+AGG - chr1_3:60117764-60117783 None:intergenic 50.0%
GTATAGCATTTGCCGTCCTC+AGG - chr1_3:60117852-60117871 None:intergenic 50.0%
GAGGACGGCAAATGCTATAC+AGG + chr1_3:60117852-60117871 Msa0130070:CDS 50.0%
CGAGTACGCTTTCACAACAC+TGG + chr1_3:60118149-60118168 Msa0130070:CDS 50.0%
ATGACTCCAGAAACCAGCGA+TGG - chr1_3:60118176-60118195 None:intergenic 50.0%
GATGGTCATGATGGCTTTCC+TGG + chr1_3:60118212-60118231 Msa0130070:CDS 50.0%
! GGAAGGTACAGTGAAGGACG+AGG - chr1_3:60106907-60106926 None:intergenic 55.0%
ACACCGTGTTCCTCCTCAAG+AGG - chr1_3:60109272-60109291 None:intergenic 55.0%
TATACCACCCGAGCACTTCG+CGG + chr1_3:60109351-60109370 Msa0130070:CDS 55.0%
! TTTCAACCCGCGAAGTGCTC+GGG - chr1_3:60109361-60109380 None:intergenic 55.0%
GAGAAGGGAGGAGAAGGAGT+AGG - chr1_3:60113286-60113305 None:intergenic 55.0%
GGGAAACCACAGGCTGTTGT+GGG - chr1_3:60114896-60114915 None:intergenic 55.0%
AGGGAAACCACAGGCTGTTG+TGG - chr1_3:60114897-60114916 None:intergenic 55.0%
! ACGGTAGCTGATGCTGGTTG+AGG + chr1_3:60115468-60115487 Msa0130070:intron 55.0%
! ACAGGTGGTAGCGATGATGG+CGG + chr1_3:60115563-60115582 Msa0130070:CDS 55.0%
!! GATGATGGCGGAGTCAGATG+TGG + chr1_3:60115575-60115594 Msa0130070:intron 55.0%
GGCTCTGTTTGTGGGTTTGG+AGG + chr1_3:60115689-60115708 Msa0130070:intron 55.0%
GTTTGTGGGTTTGGAGGGGT+AGG + chr1_3:60115695-60115714 Msa0130070:intron 55.0%
! ATGGGAGGCAAGGGCTTTGA+GGG - chr1_3:60115935-60115954 None:intergenic 55.0%
TATGGGAGGCAAGGGCTTTG+AGG - chr1_3:60115936-60115955 None:intergenic 55.0%
TGGAGAGCTATGGGAGGCAA+GGG - chr1_3:60115944-60115963 None:intergenic 55.0%
ATGGAGAGCTATGGGAGGCA+AGG - chr1_3:60115945-60115964 None:intergenic 55.0%
TTTGAGGGGAGGAGAAGGGA+GGG - chr1_3:60116000-60116019 None:intergenic 55.0%
!! TTTTGAGGGGAGGAGAAGGG+AGG - chr1_3:60116001-60116020 None:intergenic 55.0%
!!! GGAGTTTTGAGGGGAGGAGA+AGG - chr1_3:60116005-60116024 None:intergenic 55.0%
TGGGGCCAGGGGATATACTA+TGG - chr1_3:60116370-60116389 None:intergenic 55.0%
AAGTGGAAAAGTGGGGCCAG+GGG - chr1_3:60116381-60116400 None:intergenic 55.0%
GAAGTGGAAAAGTGGGGCCA+GGG - chr1_3:60116382-60116401 None:intergenic 55.0%
AGAAGTGGAAAAGTGGGGCC+AGG - chr1_3:60116383-60116402 None:intergenic 55.0%
GACTCCGTCGGATATCAGTG+TGG + chr1_3:60116689-60116708 Msa0130070:intron 55.0%
TCAGTGTGGCTGAGAGATGC+AGG + chr1_3:60116703-60116722 Msa0130070:CDS 55.0%
!! ACTCCGGGGATTGGTTCAAC+AGG + chr1_3:60117084-60117103 Msa0130070:CDS 55.0%
! GGTAAGTCGGTGTCCTAGTG+TGG - chr1_3:60117580-60117599 None:intergenic 55.0%
AAGGATGGGTCTGCCAGTCT+TGG - chr1_3:60117745-60117764 None:intergenic 55.0%
ACCCATCCTTCAGGCCTCAA+AGG + chr1_3:60117755-60117774 Msa0130070:CDS 55.0%
!! CTTCACCACTTTTCCGCCTG+AGG + chr1_3:60117833-60117852 Msa0130070:CDS 55.0%
!! ACCACTTTTCCGCCTGAGGA+CGG + chr1_3:60117837-60117856 Msa0130070:CDS 55.0%
TAGCATTTGCCGTCCTCAGG+CGG - chr1_3:60117849-60117868 None:intergenic 55.0%
TCACAACACTGGACCATCGC+TGG + chr1_3:60118160-60118179 Msa0130070:CDS 55.0%
!! ACTGGACCATCGCTGGTTTC+TGG + chr1_3:60118167-60118186 Msa0130070:CDS 55.0%
CTTTCCTGGGTTGTCTCAGC+TGG + chr1_3:60118226-60118245 Msa0130070:CDS 55.0%
ATACCACCCGAGCACTTCGC+GGG + chr1_3:60109352-60109371 Msa0130070:CDS 60.0%
GTGCAGCCTGAATTTCGCGG+TGG + chr1_3:60110082-60110101 Msa0130070:CDS 60.0%
GGGCTCTGCAATGTGGAGAG+TGG + chr1_3:60115085-60115104 Msa0130070:intron 60.0%
! TTTGTAGTGGAGGGCGGCTG+TGG + chr1_3:60115132-60115151 Msa0130070:intron 60.0%
TGGGTTTGGAGGGGTAGGGA+AGG + chr1_3:60115700-60115719 Msa0130070:intron 60.0%
GGGTTTGGAGGGGTAGGGAA+GGG + chr1_3:60115701-60115720 Msa0130070:intron 60.0%
!! TGGGAGGCAAGGGCTTTGAG+GGG - chr1_3:60115934-60115953 None:intergenic 60.0%
!! GGGTGTTGGTCTTCCTCCAC+AGG + chr1_3:60117335-60117354 Msa0130070:CDS 60.0%
GACTGGCAGACCCATCCTTC+AGG + chr1_3:60117746-60117765 Msa0130070:CDS 60.0%
GGATCCAGCTGAGACAACCC+AGG - chr1_3:60118233-60118252 None:intergenic 60.0%
CAGCTGTGTTCGTCGAGCCA+AGG + chr1_3:60118608-60118627 Msa0130070:CDS 60.0%
TAGTGGAGGGCGGCTGTGGT+TGG + chr1_3:60115136-60115155 Msa0130070:intron 65.0%
!! GGGAGGCAAGGGCTTTGAGG+GGG - chr1_3:60115933-60115952 None:intergenic 65.0%
GCCGTCCTCAGGCGGAAAAG+TGG - chr1_3:60117841-60117860 None:intergenic 65.0%
! CAACCCGCGAAGTGCTCGGG+TGG - chr1_3:60109358-60109377 None:intergenic 70.0%
GAGGGCGGCTGTGGTTGGCG+TGG + chr1_3:60115141-60115160 Msa0130070:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 60106817 60118815 60106817 ID=Msa0130070;Name=Msa0130070
chr1_3 mRNA 60106817 60118815 60106817 ID=Msa0130070-mRNA-1;Parent=Msa0130070;Name=Msa0130070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=12|0.92|0.96|0.96|1|1|29|176|987
chr1_3 exon 60106817 60107038 60106817 ID=Msa0130070-mRNA-1:exon:19709;Parent=Msa0130070-mRNA-1
chr1_3 exon 60107166 60107313 60107166 ID=Msa0130070-mRNA-1:exon:19710;Parent=Msa0130070-mRNA-1
chr1_3 exon 60107984 60108036 60107984 ID=Msa0130070-mRNA-1:exon:19711;Parent=Msa0130070-mRNA-1
chr1_3 exon 60108579 60108687 60108579 ID=Msa0130070-mRNA-1:exon:19712;Parent=Msa0130070-mRNA-1
chr1_3 exon 60108970 60109106 60108970 ID=Msa0130070-mRNA-1:exon:19713;Parent=Msa0130070-mRNA-1
chr1_3 exon 60109212 60109411 60109212 ID=Msa0130070-mRNA-1:exon:19714;Parent=Msa0130070-mRNA-1
chr1_3 exon 60109542 60109691 60109542 ID=Msa0130070-mRNA-1:exon:19715;Parent=Msa0130070-mRNA-1
chr1_3 exon 60110066 60110126 60110066 ID=Msa0130070-mRNA-1:exon:19716;Parent=Msa0130070-mRNA-1
chr1_3 exon 60110287 60110407 60110287 ID=Msa0130070-mRNA-1:exon:19717;Parent=Msa0130070-mRNA-1
chr1_3 exon 60110817 60110907 60110817 ID=Msa0130070-mRNA-1:exon:19718;Parent=Msa0130070-mRNA-1
chr1_3 exon 60110992 60111085 60110992 ID=Msa0130070-mRNA-1:exon:19719;Parent=Msa0130070-mRNA-1
chr1_3 exon 60111237 60111332 60111237 ID=Msa0130070-mRNA-1:exon:19720;Parent=Msa0130070-mRNA-1
chr1_3 exon 60111482 60111622 60111482 ID=Msa0130070-mRNA-1:exon:19721;Parent=Msa0130070-mRNA-1
chr1_3 exon 60112031 60112081 60112031 ID=Msa0130070-mRNA-1:exon:19722;Parent=Msa0130070-mRNA-1
chr1_3 exon 60112567 60112637 60112567 ID=Msa0130070-mRNA-1:exon:19723;Parent=Msa0130070-mRNA-1
chr1_3 exon 60112775 60112867 60112775 ID=Msa0130070-mRNA-1:exon:19724;Parent=Msa0130070-mRNA-1
chr1_3 exon 60113161 60113251 60113161 ID=Msa0130070-mRNA-1:exon:19725;Parent=Msa0130070-mRNA-1
chr1_3 exon 60113614 60113685 60113614 ID=Msa0130070-mRNA-1:exon:19726;Parent=Msa0130070-mRNA-1
chr1_3 exon 60114399 60114455 60114399 ID=Msa0130070-mRNA-1:exon:19727;Parent=Msa0130070-mRNA-1
chr1_3 exon 60115497 60115586 60115497 ID=Msa0130070-mRNA-1:exon:19728;Parent=Msa0130070-mRNA-1
chr1_3 exon 60116287 60116355 60116287 ID=Msa0130070-mRNA-1:exon:19729;Parent=Msa0130070-mRNA-1
chr1_3 exon 60116529 60116585 60116529 ID=Msa0130070-mRNA-1:exon:19730;Parent=Msa0130070-mRNA-1
chr1_3 exon 60116690 60116764 60116690 ID=Msa0130070-mRNA-1:exon:19731;Parent=Msa0130070-mRNA-1
chr1_3 exon 60117017 60117105 60117017 ID=Msa0130070-mRNA-1:exon:19732;Parent=Msa0130070-mRNA-1
chr1_3 exon 60117305 60117382 60117305 ID=Msa0130070-mRNA-1:exon:19733;Parent=Msa0130070-mRNA-1
chr1_3 exon 60117735 60117873 60117735 ID=Msa0130070-mRNA-1:exon:19734;Parent=Msa0130070-mRNA-1
chr1_3 exon 60118146 60118255 60118146 ID=Msa0130070-mRNA-1:exon:19735;Parent=Msa0130070-mRNA-1
chr1_3 exon 60118338 60118437 60118338 ID=Msa0130070-mRNA-1:exon:19736;Parent=Msa0130070-mRNA-1
chr1_3 exon 60118529 60118815 60118529 ID=Msa0130070-mRNA-1:exon:19737;Parent=Msa0130070-mRNA-1
chr1_3 five_prime_UTR 60106817 60106828 60106817 ID=Msa0130070-mRNA-1:five_prime_utr;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60106829 60107038 60106829 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60107166 60107313 60107166 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60107984 60108036 60107984 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60108579 60108687 60108579 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60108970 60109106 60108970 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60109212 60109411 60109212 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60109542 60109691 60109542 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60110066 60110126 60110066 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60110287 60110407 60110287 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60110817 60110907 60110817 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60110992 60111085 60110992 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60111237 60111332 60111237 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60111482 60111622 60111482 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60112031 60112081 60112031 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60112567 60112637 60112567 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60112775 60112867 60112775 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60113161 60113251 60113161 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60113614 60113685 60113614 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60114399 60114455 60114399 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60115497 60115586 60115497 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60116287 60116355 60116287 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60116529 60116585 60116529 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60116690 60116764 60116690 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60117017 60117105 60117017 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60117305 60117382 60117305 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60117735 60117873 60117735 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60118146 60118255 60118146 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60118338 60118437 60118338 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 CDS 60118529 60118639 60118529 ID=Msa0130070-mRNA-1:cds;Parent=Msa0130070-mRNA-1
chr1_3 three_prime_UTR 60118640 60118815 60118640 ID=Msa0130070-mRNA-1:three_prime_utr;Parent=Msa0130070-mRNA-1
Gene Sequence

>Msa0130070

ATGCTTCGTTTAACATCATCACCATTTTCACTTTCTTTCCCTTCAATTTCCAACCTCAATCTTCTTCCATCATTCCCTCGTCCTTCACTGTACCTTCCTTCTTCATCTACTACTTTCCACACTACTTCACTTCGCATTCACACCCCACCACCTCTTTCTTCTTCTTCCCTTTCTTCTTCCTCTGTTGAACAAACCACTTCCATTTCTCAGATGCAGGATAATTTGTTATTGTACTCAAGAGCTTATTGGGTCACTCAATCTCTTATTGCTTGGAATGTTGATCATCATCAAAATGGGGTCTGTTACCTACTTTCCAGCAAAGATGCTTCTTTGAATATTTCGAATTCTCAAATTCAAGGCGAGGATTTGAAAATTAAGCTTGAAGAGGATAAGGCTGGCCTTCCTGCAAATGTGGTGGAGAAATTTCCACACATTCGAGGCTACAAAGCTTTCAATATGCCTCCCGGTTCAGATATTAAATCTCTTCTTAAATCCCAGTTGGCGATTGTTATTTATGATTCTGATGAGAAATGCAGGGACTGTACTGGTTTGCAGTTACCTGGTGTTTTAGATGAGCTTTTTTCATATAATGGTCCACTCGGTGCACTTTTCTCAGAGGAAGCTGTATCACTTTATTTGTGGGCGCCTACCGCTCAATCGGTGCGTGCTTACATCTATAAGCACCCATCAGGAGATGATCCCATAAAAATTGTTCCTCTTGAGGAGGAACACGGTGTTTGGAGAACTAAAGGGCCAAAAAGTTGGGAGGGTTGTTACTATGTTTATGAAGTATGTGTATACCACCCGAGCACTTCGCGGGTTGAAAAATGCTATGCTAATGATCCATATGCTAGAGGACTTTCATCAGATGGAAGGCGTACTTTTCTGCTTAATCTTGACTCCGATGAGTTGAAACCTGATGGATGGGAAAATCTGGCAAATGAGAAACCCATTTTACATTCTTTCTCTGATATAAGCATATATGAATTGCATATAAGGGATTTCAGTGCCAATGATCTCTCTGTGCAGCCTGAATTTCGCGGTGGTTATCTTGCCTTCACTTTGACGGATTCAGCAGGTGTACTTCATCTAAAGAAATTATCAAGTGCGGGTATCACCCATGTCCATCTATTGCCAACATTTCAATTTGCTGGGGTTGATGATCAAAAAGAGAACTGGAGAAATGTTGATACGTCGGTACTGGAAAGCTTTCCACCTGATTCAGATCAGCAACAAGCTCTTATTACAGCCATCCAAAACTTTGATGAATATAACTGGGGGTACAACCCTGTTCTTTGGGGTGTCCCTAAAGGCAGCTATGCAAGTAATCCAAATGGTCCAAACCGTACAATTGAGTTTCGTAAGATGGTTCAGGCTCTTAGTCATACTGGCCTTCATGTTGTGTTGGATACTGTCTACAATCATTTGCAGGGAAATGGGCCCTTTGATGAACATTCTGTCCTTGATAAGATTGTTCCAGGTTACTATCTAAGAAGGAACACAGATGGTTTCATTGAGAACAGTACTTGTATGAATAATACTGCGAGTGAGCATTCTATGGTTGAGCGTTTGATCCTCGATGATCTTGTACACTGGGCAGTCAATTATAAGATTGATGGGTTCAGATTTGACCTTATGGGTCATATAATGAAGAGTACAATGGTGAAAGCAAAAAATGCTCTCCAACGTTTAACAAAAGAAAAGGATGGAGTTGATGGTTCAAGCATCTACATATATGGTGAAGGATGGGACTTTGGTGAAGTTGCCAAAAATGGGCGTGGGATAAACGCTTCTCAGTTCAATCTTGCTGGAACACAAATTGGGAGCTTTAACGATCGAATTCGTGATTCCGTGCTTGGTGGATCTCCATTTGGCCACCCTCTTCAACAGGGTTTTGTGACTGGTCTACTTTTGCAGCCTAATGGCTATGATCATGGAACAGAAGCTAATATGAAATCCATGCTTTCTGCATCAATGGATCACATCCAGATTGGAATGGCTGGAAACTTGAAAGATTTTGTACTAACCAACTCCCAAGGACAAGAGAGAAGAGTGGCAGCAATGGCAGTAGTAGATAAATGGAGAGGTGGAAGTTATGACAAAGTTGTAAGTACAGGTGGTAGCGATGATGGCGGAGTGAAAGGGTCGGAAGTATTAACATATGGTGGGACACCCGTTGCATTTGCCTCATACCCCATAGAGACTGTCAATTATGTTTCTGCTCATGATAATGAAACCCTCTTTGACATTGTGAGCTTAAAGACTCCGTCGGATATCAGTGTGGCTGAGAGATGCAGGATAAACCATTTGGCAACAAGTGTTATAGCATTATCACAGGGCATACCATTTTTTCACTCTGGTGATGAGATACTCCGCTCAAAATCACTGGATCGAGATTCATACAACTCCGGGGATTGGTTCAACAGGCTTGACTTTACATACAATTCCAATAACTGGGGTGTTGGTCTTCCTCCACAGGAGAAAAATGAAAAACACTGGTCACTAATGAAACCAAGACTGGCAGACCCATCCTTCAGGCCTCAAAGGATTGACATCCTAGCTACAATGGACAATTTCTTAAACCTGTTGCGTATAAGGTATTCTTCACCACTTTTCCGCCTGAGGACGGCAAATGCTATACAGCAACGAGTACGCTTTCACAACACTGGACCATCGCTGGTTTCTGGAGTCATAGTGATGAGCATTGAAGATGGTCATGATGGCTTTCCTGGGTTGTCTCAGCTGGATCCCATATATTCGTTCATTGTTGTCGTTTTCAACGCGAGTCCACAAGAAATATCATTTGTTAGCCCTTCCCTGCAATCAAGAAATCTTCAATTGCATCCCGTTCAGGAAATGTCATCTGATGAGCTTGTTAAGAGTTCAAAATATGAGGCTTCTTCTGGTTGTTTTGTTGTGTCTCGAAGGACGACAGCTGTGTTCGTCGAGCCAAGGAAAATGTAA
Protein sequence

>Msa0130070

MLRLTSSPFSLSFPSISNLNLLPSFPRPSLYLPSSSTTFHTTSLRIHTPPPLSSSSLSSSSVEQTTSISQMQDNLLLYSRAYWVTQSLIAWNVDHHQNGVCYLLSSKDASLNISNSQIQGEDLKIKLEEDKAGLPANVVEKFPHIRGYKAFNMPPGSDIKSLLKSQLAIVIYDSDEKCRDCTGLQLPGVLDELFSYNGPLGALFSEEAVSLYLWAPTAQSVRAYIYKHPSGDDPIKIVPLEEEHGVWRTKGPKSWEGCYYVYEVCVYHPSTSRVEKCYANDPYARGLSSDGRRTFLLNLDSDELKPDGWENLANEKPILHSFSDISIYELHIRDFSANDLSVQPEFRGGYLAFTLTDSAGVLHLKKLSSAGITHVHLLPTFQFAGVDDQKENWRNVDTSVLESFPPDSDQQQALITAIQNFDEYNWGYNPVLWGVPKGSYASNPNGPNRTIEFRKMVQALSHTGLHVVLDTVYNHLQGNGPFDEHSVLDKIVPGYYLRRNTDGFIENSTCMNNTASEHSMVERLILDDLVHWAVNYKIDGFRFDLMGHIMKSTMVKAKNALQRLTKEKDGVDGSSIYIYGEGWDFGEVAKNGRGINASQFNLAGTQIGSFNDRIRDSVLGGSPFGHPLQQGFVTGLLLQPNGYDHGTEANMKSMLSASMDHIQIGMAGNLKDFVLTNSQGQERRVAAMAVVDKWRGGSYDKVVSTGGSDDGGVKGSEVLTYGGTPVAFASYPIETVNYVSAHDNETLFDIVSLKTPSDISVAERCRINHLATSVIALSQGIPFFHSGDEILRSKSLDRDSYNSGDWFNRLDFTYNSNNWGVGLPPQEKNEKHWSLMKPRLADPSFRPQRIDILATMDNFLNLLRIRYSSPLFRLRTANAIQQRVRFHNTGPSLVSGVIVMSIEDGHDGFPGLSQLDPIYSFIVVVFNASPQEISFVSPSLQSRNLQLHPVQEMSSDELVKSSKYEASSGCFVVSRRTTAVFVEPRKM*