AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0909540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909540 MtrunA17_Chr3g0078481 90.909 385 19 3 1 371 1 383 0.0 674
Msa0909540 MtrunA17_Chr3g0114921 64.516 372 113 5 11 366 75 443 9.67e-163 463
Msa0909540 MtrunA17_Chr3g0114931 62.717 346 106 7 39 368 101 439 1.42e-132 386
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909540 AT2G41705.3 60.606 330 117 4 49 366 128 456 5.96e-126 370
Msa0909540 AT2G41705.2 60.606 330 117 4 49 366 128 456 5.96e-126 370
Msa0909540 AT2G41705.4 60.606 330 117 4 49 366 128 456 5.96e-126 370
Msa0909540 AT2G41705.1 60.606 330 117 4 49 366 128 456 5.96e-126 370

Find 78 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATACTGTGTGCCTATT+TGG 0.130972 6_2:+12043634 Msa0909540:CDS
TAAAGAATTGCCAAAGTTAT+TGG 0.149331 6_2:+12040517 Msa0909540:CDS
TATACTCTGGACAAGTTATT+TGG 0.190006 6_2:+12041393 Msa0909540:CDS
GTTTCAAGTGGCTTCTTATA+AGG 0.252360 6_2:+12042497 Msa0909540:CDS
GCTAAACTTGACTTCTTATA+AGG 0.264542 6_2:+12042519 Msa0909540:CDS
CTCTTGGTGTGTGGATTAGA+TGG 0.264943 6_2:+12042674 Msa0909540:CDS
AATTCATCCATTCTCCAAAT+AGG 0.275234 6_2:-12043648 None:intergenic
CACGACAATATTACCTTCTA+TGG 0.281497 6_2:-12043686 None:intergenic
TGCTTCATATTTGATTCATT+TGG 0.285021 6_2:+12040544 Msa0909540:CDS
CCTTGACCTTCCTTCTAATA+TGG 0.294484 6_2:+12041458 Msa0909540:CDS
ATCAAATGTGTCCGAGTATC+TGG 0.302115 6_2:+12041673 Msa0909540:CDS
GATTGTGATACTATTGTAAA+AGG 0.321077 6_2:+12043468 Msa0909540:CDS
AACTCAGTGCTGCTGGGAAT+TGG 0.330379 6_2:+12041765 Msa0909540:CDS
CTAATCCGTGTCCATTTAAT+CGG 0.336275 6_2:-12042705 None:intergenic
GGACATTTGTTCAGATGTTA+AGG 0.336499 6_2:-12040185 None:intergenic
CGATTAAATGGACACGGATT+AGG 0.337074 6_2:+12042706 Msa0909540:CDS
GGCTTGTTATGGGGTATTAG+TGG 0.347642 6_2:+12042583 Msa0909540:CDS
AATTGGCTCTTTGTTGTGCT+TGG 0.359346 6_2:+12041782 Msa0909540:CDS
GTTGTGCTTGGCTTTCTAAT+AGG 0.360921 6_2:+12041794 Msa0909540:CDS
ATGGATGAATTATAAATTCC+AGG 0.370019 6_2:+12043660 Msa0909540:exon
ATTCATTATATCACATGAAA+TGG 0.379563 6_2:+12040093 Msa0909540:exon
ATTGTAAAAGGCATACAGTT+TGG 0.380838 6_2:+12043480 Msa0909540:CDS
GCTTGCATGGTTGGACCTCT+TGG 0.383806 6_2:+12042658 Msa0909540:CDS
AACTTTGGCAATTCTTTACT+AGG 0.383927 6_2:-12040512 None:intergenic
AACAAATTGCAGCTTCATCT+TGG 0.384111 6_2:+12040133 Msa0909540:CDS
ATGCTTGAACTCAGTGCTGC+TGG 0.401804 6_2:+12041758 Msa0909540:CDS
TGAGAGAAAGCGAGCATCCT+TGG 0.409469 6_2:+12043556 Msa0909540:CDS
GCACTAACAACTGGTTACTT+AGG 0.409745 6_2:+12041701 Msa0909540:CDS
GATCAAGAGGTTTGTTGAGT+TGG 0.420442 6_2:+12042728 Msa0909540:CDS
TACAATAGTATCACAATCTC+TGG 0.421227 6_2:-12043463 None:intergenic
GTCTAACAACGTTCAGCGGC+TGG 0.427914 6_2:+12041726 Msa0909540:CDS
GTGACAGTTCATTTACTTGA+AGG 0.431162 6_2:+12043706 Msa0909540:three_prime_UTR
AAATTCCAGGTAGCCATAGA+AGG 0.448639 6_2:+12043673 Msa0909540:exon
CTGTGGATCGCTTGCATGGT+TGG 0.449451 6_2:+12042649 Msa0909540:CDS
CTGGCTGTTGCACTAACAAC+TGG 0.450496 6_2:+12041692 Msa0909540:CDS
TTGTTGAGTTGGATGCGATT+TGG 0.450759 6_2:+12042739 Msa0909540:CDS
AAAGTAGAGACCATATTAGA+AGG 0.455328 6_2:-12041468 None:intergenic
GAAGCATTATCCAATAACTT+TGG 0.459077 6_2:-12040527 None:intergenic
TATCCCAAATATGATGGAAA+AGG 0.466392 6_2:-12042461 None:intergenic
CACTAACAACTGGTTACTTA+GGG 0.468627 6_2:+12041702 Msa0909540:CDS
TCTCTTTCAATGCTTAAAAG+AGG 0.475069 6_2:-12040208 None:intergenic
AGGCATACAGTTTGGCCTGA+TGG 0.477767 6_2:+12043488 Msa0909540:CDS
GGCATACAGTTTGGCCTGAT+GGG 0.477918 6_2:+12043489 Msa0909540:CDS
GACATTTGTTCAGATGTTAA+GGG 0.482080 6_2:-12040184 None:intergenic
CTCTTTCAATGCTTAAAAGA+GGG 0.490143 6_2:-12040207 None:intergenic
TTCTCTCATTTCATTGAACT+CGG 0.491070 6_2:-12043541 None:intergenic
AGATTCTGAAGACATACAAC+AGG 0.496202 6_2:+12040231 Msa0909540:CDS
AGGAAGGTCAAGGTAAAGAA+TGG 0.496325 6_2:-12041448 None:intergenic
CTAGTCACATGACCGACACT+AGG 0.497152 6_2:-12041417 None:intergenic
TGTCTCTGCTGCTTGTATCA+TGG 0.508900 6_2:+12042777 Msa0909540:CDS
ATGATTGCTGAATTCAAGAA+TGG 0.511956 6_2:+12042613 Msa0909540:CDS
TAAACACTTAGCAGTTATAG+TGG 0.520490 6_2:+12042543 Msa0909540:CDS
TTTGGGATAGAAACAGCTAA+AGG 0.521423 6_2:+12042475 Msa0909540:CDS
CTGTGTGCCTATTTGGAGAA+TGG 0.525340 6_2:+12043641 Msa0909540:CDS
TTCATTGAACTCGGCAACAA+AGG 0.530538 6_2:-12043532 None:intergenic
CAGTGCTCAAACAACCCATC+AGG 0.538111 6_2:-12043503 None:intergenic
TAATCCGTGTCCATTTAATC+GGG 0.543035 6_2:-12042704 None:intergenic
TGTTTCTATCCCAAATATGA+TGG 0.543659 6_2:-12042467 None:intergenic
TATTACCTTCTATGGCTACC+TGG 0.545154 6_2:-12043678 None:intergenic
TGCTTGAACTCAGTGCTGCT+GGG 0.552430 6_2:+12041759 Msa0909540:CDS
GGTATTAACAAGATATACTC+TGG 0.561065 6_2:+12041380 Msa0909540:intron
GGTCAAGGTAAAGAATGGTT+TGG 0.564374 6_2:-12041443 None:intergenic
AAGTTATTTGGCCCTAGTGT+CGG 0.566597 6_2:+12041405 Msa0909540:CDS
CATGAAATGGAGCATGATGT+TGG 0.566790 6_2:+12040106 Msa0909540:exon
TAGAGACCATATTAGAAGGA+AGG 0.567138 6_2:-12041464 None:intergenic
TGGTTGGACCTCTTGGTGTG+TGG 0.574188 6_2:+12042665 Msa0909540:CDS
TCTTTCAATGCTTAAAAGAG+GGG 0.580875 6_2:-12040206 None:intergenic
TTATCTGTGGATCGCTTGCA+TGG 0.589765 6_2:+12042645 Msa0909540:CDS
AAACAGCTAAAGGTTTCAAG+TGG 0.608710 6_2:+12042485 Msa0909540:CDS
TAGTGCAACAGCCAGATACT+CGG 0.608940 6_2:-12041684 None:intergenic
GTATAAACATATGCTCTCCA+AGG 0.612277 6_2:-12043573 None:intergenic
TTATCCCGATTAAATGGACA+CGG 0.612286 6_2:+12042700 Msa0909540:CDS
TAGTCACATGACCGACACTA+GGG 0.613234 6_2:-12041416 None:intergenic
GGACACGGATTAGGATCAAG+AGG 0.621332 6_2:+12042715 Msa0909540:CDS
CCATATTAGAAGGAAGGTCA+AGG 0.628711 6_2:-12041458 None:intergenic
GGGAGTCTAACAACGTTCAG+CGG 0.633659 6_2:+12041722 Msa0909540:CDS
CATCTAATCCACACACCAAG+AGG 0.633898 6_2:-12042673 None:intergenic
ATGGTGAAAATGCTTATCTG+TGG 0.657260 6_2:+12042632 Msa0909540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAATTTTGATATACTAT+TGG - chr6_2:12040424-12040443 None:intergenic 10.0%
!!! ATTTCTTATTATTTTGATTA+CGG + chr6_2:12043370-12043389 Msa0909540:intron 10.0%
!! AAACATGATAAAATTTAAGT+TGG - chr6_2:12040846-12040865 None:intergenic 15.0%
!!! AACTTAAATTTTATCATGTT+TGG + chr6_2:12040845-12040864 Msa0909540:intron 15.0%
!! AACAATAATCATGTATTATA+GGG + chr6_2:12042318-12042337 Msa0909540:intron 15.0%
!!! TTTCTTATTATTTTGATTAC+GGG + chr6_2:12043371-12043390 Msa0909540:intron 15.0%
!! ATTCATTATATCACATGAAA+TGG + chr6_2:12040093-12040112 Msa0909540:exon 20.0%
!!! AAGATTCAAAACATTTTTGT+TGG + chr6_2:12040277-12040296 Msa0909540:intron 20.0%
!!! ATATGTTTTTGATGATTTGA+CGG - chr6_2:12040360-12040379 None:intergenic 20.0%
!! TCATCAAAAACATATATGAT+TGG + chr6_2:12040365-12040384 Msa0909540:intron 20.0%
!!! TCATTTTCTGTTTATAACAT+TGG + chr6_2:12040990-12041009 Msa0909540:intron 20.0%
!! TATAATGAAGTTATGAATTC+TGG + chr6_2:12041282-12041301 Msa0909540:intron 20.0%
!!! AATTTAAGGTGCAAAAATTT+AGG - chr6_2:12041509-12041528 None:intergenic 20.0%
!!! AGAAGTAATTTGAAAGTATT+CGG - chr6_2:12041574-12041593 None:intergenic 20.0%
!!! ACTTTTATGAATATCTTTCT+AGG + chr6_2:12041601-12041620 Msa0909540:intron 20.0%
!!! TACTGTTCAATAACTTTTTA+CGG + chr6_2:12042025-12042044 Msa0909540:intron 20.0%
!!! AATTGTAAGTTTTGTAATAC+AGG + chr6_2:12042267-12042286 Msa0909540:intron 20.0%
!! CAACAATAATCATGTATTAT+AGG + chr6_2:12042317-12042336 Msa0909540:intron 20.0%
!! TACTAGAAGAAAAGAAAAAA+AGG + chr6_2:12042972-12042991 Msa0909540:intron 20.0%
!! AAAAAAGGAAAACTATATTC+AGG + chr6_2:12042987-12043006 Msa0909540:intron 20.0%
!! AAAAAGGAAAACTATATTCA+GGG + chr6_2:12042988-12043007 Msa0909540:intron 20.0%
!!! ATTTAATTTCATGTTTCAAG+AGG + chr6_2:12043018-12043037 Msa0909540:intron 20.0%
!! ATACAAAATTGTAACAAAAG+TGG - chr6_2:12043117-12043136 None:intergenic 20.0%
! TAAAGAATTGCCAAAGTTAT+TGG + chr6_2:12040517-12040536 Msa0909540:CDS 25.0%
! TGCTTCATATTTGATTCATT+TGG + chr6_2:12040544-12040563 Msa0909540:CDS 25.0%
!! ATTTTATCATTGAAGTTCAG+AGG - chr6_2:12040602-12040621 None:intergenic 25.0%
! GTCTCAATTACATAATACAT+CGG + chr6_2:12040894-12040913 Msa0909540:intron 25.0%
! TGCAATAAAAGATCATGTAA+TGG + chr6_2:12040926-12040945 Msa0909540:intron 25.0%
! TTATAACATTGGTCGTATAT+AGG + chr6_2:12041001-12041020 Msa0909540:intron 25.0%
! TGATTATCTTCATCATCTTT+AGG + chr6_2:12041029-12041048 Msa0909540:intron 25.0%
! ACTGTTCATACTTTATACAA+TGG - chr6_2:12041114-12041133 None:intergenic 25.0%
!!! TTGTTGCACTCATTTATTTT+TGG + chr6_2:12041247-12041266 Msa0909540:intron 25.0%
!!! TGTTGCACTCATTTATTTTT+GGG + chr6_2:12041248-12041267 Msa0909540:intron 25.0%
! CAGAGCTTCTTAAAAATTTA+AGG - chr6_2:12041523-12041542 None:intergenic 25.0%
! TTATGAATATCTTTCTAGGT+TGG + chr6_2:12041605-12041624 Msa0909540:intron 25.0%
!!! GTTTGATAAGTATGTTTTAG+TGG + chr6_2:12041834-12041853 Msa0909540:intron 25.0%
!!! ATAAGTATGTTTTAGTGGTA+TGG + chr6_2:12041839-12041858 Msa0909540:intron 25.0%
!! TTTTATATGAGAACTAGAGA+AGG + chr6_2:12042095-12042114 Msa0909540:intron 25.0%
! TTTATATGAGAACTAGAGAA+GGG + chr6_2:12042096-12042115 Msa0909540:intron 25.0%
! ACATGAATATTAGATTGAGA+AGG - chr6_2:12042859-12042878 None:intergenic 25.0%
!!! TTTTGTTTATGTTCGTGAAT+AGG + chr6_2:12042929-12042948 Msa0909540:intron 25.0%
!! GTTGACGTTTTTAAACATAA+AGG + chr6_2:12043254-12043273 Msa0909540:intron 25.0%
! ATAGATGAAACACATGTTAA+AGG + chr6_2:12043294-12043313 Msa0909540:intron 25.0%
!!! TTTTTTGACAAAACTGCAAT+AGG - chr6_2:12043323-12043342 None:intergenic 25.0%
! GATTGTGATACTATTGTAAA+AGG + chr6_2:12043468-12043487 Msa0909540:CDS 25.0%
!! ATTTGTTCCTCATTCTTTTT+AGG + chr6_2:12043606-12043625 Msa0909540:CDS 25.0%
!! TTTGTTCCTCATTCTTTTTA+GGG + chr6_2:12043607-12043626 Msa0909540:CDS 25.0%
! ATGGATGAATTATAAATTCC+AGG + chr6_2:12043660-12043679 Msa0909540:exon 25.0%
AAAAATAGAGGAGACAGAAT+TGG - chr6_2:12040164-12040183 None:intergenic 30.0%
AGATGTTAAGGGAAAAATAG+AGG - chr6_2:12040176-12040195 None:intergenic 30.0%
GACATTTGTTCAGATGTTAA+GGG - chr6_2:12040187-12040206 None:intergenic 30.0%
TCTTTCAATGCTTAAAAGAG+GGG - chr6_2:12040209-12040228 None:intergenic 30.0%
CTCTTTCAATGCTTAAAAGA+GGG - chr6_2:12040210-12040229 None:intergenic 30.0%
TCTCTTTCAATGCTTAAAAG+AGG - chr6_2:12040211-12040230 None:intergenic 30.0%
!!! TACTCTTTTTTGATCTGCTA+TGG + chr6_2:12040446-12040465 Msa0909540:intron 30.0%
! TTTTGATCTGCTATGGTAAA+TGG + chr6_2:12040453-12040472 Msa0909540:intron 30.0%
AACTTTGGCAATTCTTTACT+AGG - chr6_2:12040515-12040534 None:intergenic 30.0%
! GAAGCATTATCCAATAACTT+TGG - chr6_2:12040530-12040549 None:intergenic 30.0%
!! TTGATTCATTTGGCTGTTTT+CGG + chr6_2:12040554-12040573 Msa0909540:CDS 30.0%
GTAATGGTCAAATGGAAATA+AGG - chr6_2:12040654-12040673 None:intergenic 30.0%
! ACTATTTTCAGTTCATGTTG+TGG + chr6_2:12040695-12040714 Msa0909540:intron 30.0%
ATATGAGTACTATAGTGAAC+TGG - chr6_2:12040775-12040794 None:intergenic 30.0%
AATGGAATAAATGCAACTAC+TGG - chr6_2:12041096-12041115 None:intergenic 30.0%
TTCCTAAGGTTGAAAAATAC+AGG - chr6_2:12041154-12041173 None:intergenic 30.0%
GGTATTAACAAGATATACTC+TGG + chr6_2:12041380-12041399 Msa0909540:intron 30.0%
TATACTCTGGACAAGTTATT+TGG + chr6_2:12041393-12041412 Msa0909540:CDS 30.0%
AAAGTAGAGACCATATTAGA+AGG - chr6_2:12041471-12041490 None:intergenic 30.0%
AAAAATTTAGGAGTGAGGAA+GGG - chr6_2:12041497-12041516 None:intergenic 30.0%
! AGGATGAGCTTTTGAATAAT+TGG + chr6_2:12042413-12042432 Msa0909540:intron 30.0%
! TTGCCTTTTCCATCATATTT+GGG + chr6_2:12042458-12042477 Msa0909540:CDS 30.0%
! TATCCCAAATATGATGGAAA+AGG - chr6_2:12042464-12042483 None:intergenic 30.0%
! TGTTTCTATCCCAAATATGA+TGG - chr6_2:12042470-12042489 None:intergenic 30.0%
GCTAAACTTGACTTCTTATA+AGG + chr6_2:12042519-12042538 Msa0909540:CDS 30.0%
TAAACACTTAGCAGTTATAG+TGG + chr6_2:12042543-12042562 Msa0909540:CDS 30.0%
ATGATTGCTGAATTCAAGAA+TGG + chr6_2:12042613-12042632 Msa0909540:CDS 30.0%
! AGAAATGAAAGTTGGTTCAA+CGG - chr6_2:12043091-12043110 None:intergenic 30.0%
ATATCTCACTTGTTTGATGT+AGG + chr6_2:12043434-12043453 Msa0909540:intron 30.0%
TACAATAGTATCACAATCTC+TGG - chr6_2:12043466-12043485 None:intergenic 30.0%
! ATTGTAAAAGGCATACAGTT+TGG + chr6_2:12043480-12043499 Msa0909540:CDS 30.0%
TTCTCTCATTTCATTGAACT+CGG - chr6_2:12043544-12043563 None:intergenic 30.0%
TAAGATCCCTAAAAAGAATG+AGG - chr6_2:12043616-12043635 None:intergenic 30.0%
TAATATACTGTGTGCCTATT+TGG + chr6_2:12043634-12043653 Msa0909540:CDS 30.0%
AATTCATCCATTCTCCAAAT+AGG - chr6_2:12043651-12043670 None:intergenic 30.0%
AACAAATTGCAGCTTCATCT+TGG + chr6_2:12040133-12040152 Msa0909540:CDS 35.0%
GGACATTTGTTCAGATGTTA+AGG - chr6_2:12040188-12040207 None:intergenic 35.0%
! AGATTCTGAAGACATACAAC+AGG + chr6_2:12040231-12040250 Msa0909540:CDS 35.0%
!! GATTGGTTGTGATTTGTTGA+CGG + chr6_2:12040382-12040401 Msa0909540:intron 35.0%
! TGCGAGTAGTTAATCGTTTT+TGG + chr6_2:12040623-12040642 Msa0909540:intron 35.0%
TCCATTTGACCATTACTAGT+TGG + chr6_2:12040658-12040677 Msa0909540:intron 35.0%
TCCAACTAGTAATGGTCAAA+TGG - chr6_2:12040662-12040681 None:intergenic 35.0%
ACCATTACTAGTTGGAGTTA+CGG + chr6_2:12040666-12040685 Msa0909540:intron 35.0%
!! CTTCATCATCTTTAGGATCT+AGG + chr6_2:12041036-12041055 Msa0909540:intron 35.0%
!! GACCTGTATTTTTCAACCTT+AGG + chr6_2:12041149-12041168 Msa0909540:intron 35.0%
TCTGGTCATAGTTTCATACT+AGG + chr6_2:12041300-12041319 Msa0909540:intron 35.0%
TTGTTCTGCTCTTATAATGC+AGG + chr6_2:12041359-12041378 Msa0909540:intron 35.0%
TAGAGACCATATTAGAAGGA+AGG - chr6_2:12041467-12041486 None:intergenic 35.0%
CAAAAATTTAGGAGTGAGGA+AGG - chr6_2:12041498-12041517 None:intergenic 35.0%
!!! TAGGTTGGTTCTTTTCTGAT+GGG + chr6_2:12041620-12041639 Msa0909540:intron 35.0%
CACTAACAACTGGTTACTTA+GGG + chr6_2:12041702-12041721 Msa0909540:CDS 35.0%
TATATGACAAAACTCACCGT+TGG + chr6_2:12042053-12042072 Msa0909540:intron 35.0%
GAGAAGGGATCAAATTACAT+TGG + chr6_2:12042111-12042130 Msa0909540:intron 35.0%
TTGAATAATTGGAGTTCTGC+AGG + chr6_2:12042424-12042443 Msa0909540:intron 35.0%
TGAATAATTGGAGTTCTGCA+GGG + chr6_2:12042425-12042444 Msa0909540:intron 35.0%
! GTTGCCTTTTCCATCATATT+TGG + chr6_2:12042457-12042476 Msa0909540:CDS 35.0%
! TTTGGGATAGAAACAGCTAA+AGG + chr6_2:12042475-12042494 Msa0909540:CDS 35.0%
AAACAGCTAAAGGTTTCAAG+TGG + chr6_2:12042485-12042504 Msa0909540:CDS 35.0%
! GTTTCAAGTGGCTTCTTATA+AGG + chr6_2:12042497-12042516 Msa0909540:CDS 35.0%
!!! GTGGTGTTTTTGCTGATTTT+AGG + chr6_2:12042562-12042581 Msa0909540:CDS 35.0%
!!! TGCTGATTTTAGGCTTGTTA+TGG + chr6_2:12042572-12042591 Msa0909540:CDS 35.0%
!!! GCTGATTTTAGGCTTGTTAT+GGG + chr6_2:12042573-12042592 Msa0909540:CDS 35.0%
!!! CTGATTTTAGGCTTGTTATG+GGG + chr6_2:12042574-12042593 Msa0909540:CDS 35.0%
ATGGTGAAAATGCTTATCTG+TGG + chr6_2:12042632-12042651 Msa0909540:CDS 35.0%
! TGGCTTTTATCCCGATTAAA+TGG + chr6_2:12042694-12042713 Msa0909540:CDS 35.0%
TTATCCCGATTAAATGGACA+CGG + chr6_2:12042700-12042719 Msa0909540:CDS 35.0%
TAATCCGTGTCCATTTAATC+GGG - chr6_2:12042707-12042726 None:intergenic 35.0%
CTAATCCGTGTCCATTTAAT+CGG - chr6_2:12042708-12042727 None:intergenic 35.0%
GAACTTTCATAGCTATAACC+TGG + chr6_2:12042885-12042904 Msa0909540:intron 35.0%
!! CTTTTGATTCTTCGAAAACC+AGG - chr6_2:12042906-12042925 None:intergenic 35.0%
AGTGGAACAGAAATGAAAGT+TGG - chr6_2:12043099-12043118 None:intergenic 35.0%
TGCATGATCACTGAATGATA+TGG + chr6_2:12043136-12043155 Msa0909540:intron 35.0%
GTATAAACATATGCTCTCCA+AGG - chr6_2:12043576-12043595 None:intergenic 35.0%
CACGACAATATTACCTTCTA+TGG - chr6_2:12043689-12043708 None:intergenic 35.0%
GTGACAGTTCATTTACTTGA+AGG + chr6_2:12043706-12043725 Msa0909540:three_prime_UTR 35.0%
TAGCAGCTACTTGAAAAAAC+TGG - chr6_2:12043799-12043818 None:intergenic 35.0%
CATGAAATGGAGCATGATGT+TGG + chr6_2:12040106-12040125 Msa0909540:exon 40.0%
TGACAATTGTCTTCAGTTGC+AGG + chr6_2:12040487-12040506 Msa0909540:intron 40.0%
!! TTGGCTGTTTTCGGTATTCT+CGG + chr6_2:12040563-12040582 Msa0909540:CDS 40.0%
ACCGTAACTCCAACTAGTAA+TGG - chr6_2:12040670-12040689 None:intergenic 40.0%
GGAATAAATGCAACTACTGG+AGG - chr6_2:12041093-12041112 None:intergenic 40.0%
!!! CAGTTTTGAGCAGATTCCTA+AGG - chr6_2:12041168-12041187 None:intergenic 40.0%
AAGTTATTTGGCCCTAGTGT+CGG + chr6_2:12041405-12041424 Msa0909540:CDS 40.0%
GGTCAAGGTAAAGAATGGTT+TGG - chr6_2:12041446-12041465 None:intergenic 40.0%
AGGAAGGTCAAGGTAAAGAA+TGG - chr6_2:12041451-12041470 None:intergenic 40.0%
CCATATTAGAAGGAAGGTCA+AGG - chr6_2:12041461-12041480 None:intergenic 40.0%
CCTTGACCTTCCTTCTAATA+TGG + chr6_2:12041458-12041477 Msa0909540:CDS 40.0%
GGTGCAAAAATTTAGGAGTG+AGG - chr6_2:12041502-12041521 None:intergenic 40.0%
!!! CTAGGTTGGTTCTTTTCTGA+TGG + chr6_2:12041619-12041638 Msa0909540:intron 40.0%
!! TTGGTTCTTTTCTGATGGGA+TGG + chr6_2:12041624-12041643 Msa0909540:CDS 40.0%
! TCTTTTCTGATGGGATGGTT+TGG + chr6_2:12041629-12041648 Msa0909540:CDS 40.0%
ATCAAATGTGTCCGAGTATC+TGG + chr6_2:12041673-12041692 Msa0909540:CDS 40.0%
GCACTAACAACTGGTTACTT+AGG + chr6_2:12041701-12041720 Msa0909540:CDS 40.0%
! AATTGGCTCTTTGTTGTGCT+TGG + chr6_2:12041782-12041801 Msa0909540:CDS 40.0%
! GTTGTGCTTGGCTTTCTAAT+AGG + chr6_2:12041794-12041813 Msa0909540:CDS 40.0%
CAGAGGAACTTTCAATCCAA+CGG - chr6_2:12042072-12042091 None:intergenic 40.0%
! GTTCTCATATAAAAGCGCAG+AGG - chr6_2:12042089-12042108 None:intergenic 40.0%
ACACACACACACATATGAGA+AGG - chr6_2:12042357-12042376 None:intergenic 40.0%
AATTATCGCAGTCTATGCAG+CGG + chr6_2:12042381-12042400 Msa0909540:intron 40.0%
CGATTAAATGGACACGGATT+AGG + chr6_2:12042706-12042725 Msa0909540:CDS 40.0%
!! GATCAAGAGGTTTGTTGAGT+TGG + chr6_2:12042728-12042747 Msa0909540:CDS 40.0%
!! TTGTTGAGTTGGATGCGATT+TGG + chr6_2:12042739-12042758 Msa0909540:CDS 40.0%
TTCATTGAACTCGGCAACAA+AGG - chr6_2:12043535-12043554 None:intergenic 40.0%
AAATTCCAGGTAGCCATAGA+AGG + chr6_2:12043673-12043692 Msa0909540:exon 40.0%
TATTACCTTCTATGGCTACC+TGG - chr6_2:12043681-12043700 None:intergenic 40.0%
!! TGGCTGTTTTCGGTATTCTC+GGG + chr6_2:12040564-12040583 Msa0909540:CDS 45.0%
TAGTCACATGACCGACACTA+GGG - chr6_2:12041419-12041438 None:intergenic 45.0%
TAGTGCAACAGCCAGATACT+CGG - chr6_2:12041687-12041706 None:intergenic 45.0%
CTATGCAGCGGTGAATTGAT+AGG + chr6_2:12042393-12042412 Msa0909540:intron 45.0%
!! GGCTTGTTATGGGGTATTAG+TGG + chr6_2:12042583-12042602 Msa0909540:CDS 45.0%
TTATCTGTGGATCGCTTGCA+TGG + chr6_2:12042645-12042664 Msa0909540:CDS 45.0%
CATCTAATCCACACACCAAG+AGG - chr6_2:12042676-12042695 None:intergenic 45.0%
!! CTCTTGGTGTGTGGATTAGA+TGG + chr6_2:12042674-12042693 Msa0909540:CDS 45.0%
! TGTCTCTGCTGCTTGTATCA+TGG + chr6_2:12042777-12042796 Msa0909540:CDS 45.0%
GGTCTAACTGTGATGTTGAG+TGG - chr6_2:12043178-12043197 None:intergenic 45.0%
GATTGTGTCCTCGTTATCGA+GGG - chr6_2:12043199-12043218 None:intergenic 45.0%
AGATTGTGTCCTCGTTATCG+AGG - chr6_2:12043200-12043219 None:intergenic 45.0%
CTGTGTGCCTATTTGGAGAA+TGG + chr6_2:12043641-12043660 Msa0909540:CDS 45.0%
!! GGCTGTTTTCGGTATTCTCG+GGG + chr6_2:12040565-12040584 Msa0909540:CDS 50.0%
CTAGTCACATGACCGACACT+AGG - chr6_2:12041420-12041439 None:intergenic 50.0%
CTGGCTGTTGCACTAACAAC+TGG + chr6_2:12041692-12041711 Msa0909540:CDS 50.0%
GGGAGTCTAACAACGTTCAG+CGG + chr6_2:12041722-12041741 Msa0909540:CDS 50.0%
ATGCTTGAACTCAGTGCTGC+TGG + chr6_2:12041758-12041777 Msa0909540:CDS 50.0%
! TGCTTGAACTCAGTGCTGCT+GGG + chr6_2:12041759-12041778 Msa0909540:CDS 50.0%
! AACTCAGTGCTGCTGGGAAT+TGG + chr6_2:12041765-12041784 Msa0909540:CDS 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr6_2:12041962-12041981 Msa0909540:intron 50.0%
!! GGACACGGATTAGGATCAAG+AGG + chr6_2:12042715-12042734 Msa0909540:CDS 50.0%
CAGTTAGACCCTCGATAACG+AGG + chr6_2:12043188-12043207 Msa0909540:intron 50.0%
AGGCATACAGTTTGGCCTGA+TGG + chr6_2:12043488-12043507 Msa0909540:CDS 50.0%
GGCATACAGTTTGGCCTGAT+GGG + chr6_2:12043489-12043508 Msa0909540:CDS 50.0%
CAGTGCTCAAACAACCCATC+AGG - chr6_2:12043506-12043525 None:intergenic 50.0%
TGAGAGAAAGCGAGCATCCT+TGG + chr6_2:12043556-12043575 Msa0909540:CDS 50.0%
GTCTAACAACGTTCAGCGGC+TGG + chr6_2:12041726-12041745 Msa0909540:CDS 55.0%
CTGTGGATCGCTTGCATGGT+TGG + chr6_2:12042649-12042668 Msa0909540:CDS 55.0%
GCTTGCATGGTTGGACCTCT+TGG + chr6_2:12042658-12042677 Msa0909540:CDS 55.0%
! TGGTTGGACCTCTTGGTGTG+TGG + chr6_2:12042665-12042684 Msa0909540:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 12040059 12043851 12040059 ID=Msa0909540;Name=Msa0909540
chr6_2 mRNA 12040059 12043851 12040059 ID=Msa0909540-mRNA-1;Parent=Msa0909540;Name=Msa0909540-mRNA-1;_AED=0.19;_eAED=0.19;_QI=53|1|1|1|0.8|0.66|6|177|371
chr6_2 exon 12040059 12040252 12040059 ID=Msa0909540-mRNA-1:exon:2822;Parent=Msa0909540-mRNA-1
chr6_2 exon 12040503 12040586 12040503 ID=Msa0909540-mRNA-1:exon:2823;Parent=Msa0909540-mRNA-1
chr6_2 exon 12041381 12041479 12041381 ID=Msa0909540-mRNA-1:exon:2824;Parent=Msa0909540-mRNA-1
chr6_2 exon 12041623 12041815 12041623 ID=Msa0909540-mRNA-1:exon:2825;Parent=Msa0909540-mRNA-1
chr6_2 exon 12042446 12042825 12042446 ID=Msa0909540-mRNA-1:exon:2826;Parent=Msa0909540-mRNA-1
chr6_2 exon 12043456 12043851 12043456 ID=Msa0909540-mRNA-1:exon:2827;Parent=Msa0909540-mRNA-1
chr6_2 five_prime_UTR 12040059 12040111 12040059 ID=Msa0909540-mRNA-1:five_prime_utr;Parent=Msa0909540-mRNA-1
chr6_2 CDS 12040112 12040252 12040112 ID=Msa0909540-mRNA-1:cds;Parent=Msa0909540-mRNA-1
chr6_2 CDS 12040503 12040586 12040503 ID=Msa0909540-mRNA-1:cds;Parent=Msa0909540-mRNA-1
chr6_2 CDS 12041381 12041479 12041381 ID=Msa0909540-mRNA-1:cds;Parent=Msa0909540-mRNA-1
chr6_2 CDS 12041623 12041815 12041623 ID=Msa0909540-mRNA-1:cds;Parent=Msa0909540-mRNA-1
chr6_2 CDS 12042446 12042825 12042446 ID=Msa0909540-mRNA-1:cds;Parent=Msa0909540-mRNA-1
chr6_2 CDS 12043456 12043674 12043456 ID=Msa0909540-mRNA-1:cds;Parent=Msa0909540-mRNA-1
chr6_2 three_prime_UTR 12043675 12043851 12043675 ID=Msa0909540-mRNA-1:three_prime_utr;Parent=Msa0909540-mRNA-1
Gene Sequence

>Msa0909540

ATGGAGCATGATGTTGGAGTTAACAAATTGCAGCTTCATCTTGGTGCATCCAATTCTGTCTCCTCTATTTTTCCCTTAACATCTGAACAAATGTCCCCTCTTTTAAGCATTGAAAGAGAAGATTCTGAAGACATACAACAGTTGCAGGAACCTAGTAAAGAATTGCCAAAGTTATTGGATAATGCTTCATATTTGATTCATTTGGCTGTTTTCGGTATTCTCGGGGTATTAACAAGATATACTCTGGACAAGTTATTTGGCCCTAGTGTCGGTCATGTGACTAGTGACCAAACCATTCTTTACCTTGACCTTCCTTCTAATATGGTTGGTTCTTTTCTGATGGGATGGTTTGGTGTTGTATTTAAAGAAGACATATCAAATGTGTCCGAGTATCTGGCTGTTGCACTAACAACTGGTTACTTAGGGAGTCTAACAACGTTCAGCGGCTGGAATCAGAAAATGCTTGAACTCAGTGCTGCTGGGAATTGGCTCTTTGTTGTGCTTGGCTTTCTAATAGGGTTATTTCTTGTTGCCTTTTCCATCATATTTGGGATAGAAACAGCTAAAGGTTTCAAGTGGCTTCTTATAAGGCTAAACTTGACTTCTTATAAGGCTAAACACTTAGCAGTTATAGTGGTGTTTTTGCTGATTTTAGGCTTGTTATGGGGTATTAGTGGTGTATTAATGATTGCTGAATTCAAGAATGGTGAAAATGCTTATCTGTGGATCGCTTGCATGGTTGGACCTCTTGGTGTGTGGATTAGATGGCTTTTATCCCGATTAAATGGACACGGATTAGGATCAAGAGGTTTGTTGAGTTGGATGCGATTTGGAACTCTAATTGCAAATGTCTCTGCTGCTTGTATCATGGCTGCACTTGCTACAACAAAGATATACGTGAACACCAGAGATTGTGATACTATTGTAAAAGGCATACAGTTTGGCCTGATGGGTTGTTTGAGCACTGTCTCTACCTTTGTTGCCGAGTTCAATGAAATGAGAGAAAGCGAGCATCCTTGGAGAGCATATGTTTATACTATAATCACAATTTGTTCCTCATTCTTTTTAGGGATCTTAATATACTGTGTGCCTATTTGGAGAATGGATGAATTATAA

Protein sequence

>Msa0909540

MEHDVGVNKLQLHLGASNSVSSIFPLTSEQMSPLLSIEREDSEDIQQLQEPSKELPKLLDNASYLIHLAVFGILGVLTRYTLDKLFGPSVGHVTSDQTILYLDLPSNMVGSFLMGWFGVVFKEDISNVSEYLAVALTTGYLGSLTTFSGWNQKMLELSAAGNWLFVVLGFLIGLFLVAFSIIFGIETAKGFKWLLIRLNLTSYKAKHLAVIVVFLLILGLLWGISGVLMIAEFKNGENAYLWIACMVGPLGVWIRWLLSRLNGHGLGSRGLLSWMRFGTLIANVSAACIMAALATTKIYVNTRDCDTIVKGIQFGLMGCLSTVSTFVAEFNEMRESEHPWRAYVYTIITICSSFFLGILIYCVPIWRMDEL*