AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0625330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625330 MtrunA17_Chr4g0000291 97.436 234 5 1 1 234 1 233 2.44e-173 476
Msa0625330 MtrunA17_Chr4g0000311 88.043 92 11 0 1 92 1 92 3.16e-57 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625330 AT3G20270.1 54.884 215 94 3 14 228 21 232 1.85e-84 266
Msa0625330 AT3G20270.3 54.884 215 94 3 14 228 21 232 1.85e-84 266

Find 81 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTTATTATTAATATT+TGG 0.173219 4_3:-4331887 None:intergenic
TAGATAGAATGAAGAGAAAT+TGG 0.223435 4_3:-4332024 None:intergenic
GCTTGCTGTTCTTGACAATT+TGG 0.246299 4_3:+4332960 Msa0625330:CDS
TTGTACATTTAGTGTGTGTT+TGG 0.316067 4_3:-4333577 None:intergenic
AACACACACTTAATATGCTT+TGG 0.328513 4_3:-4333417 None:intergenic
ATCTCATCCACTTGTATATC+AGG 0.333453 4_3:-4332495 None:intergenic
TGTGTGTTTGGGAAGGCTTT+TGG 0.364833 4_3:-4333565 None:intergenic
ACTGATCTAGTGTAAGGATA+TGG 0.366614 4_3:-4333244 None:intergenic
CTGGCTAAACCTGGTGGAAT+AGG 0.372989 4_3:-4332304 None:intergenic
TGATGATTTCAGAAGGTTCA+TGG 0.389939 4_3:+4332437 Msa0625330:intron
AGAAACATTCGGTTCGGAAA+AGG 0.403331 4_3:-4332222 None:intergenic
ATGAACTTGTATCTCGAATC+TGG 0.411354 4_3:+4332938 Msa0625330:CDS
ACCTCTATAATCACATGATC+TGG 0.411609 4_3:-4332136 None:intergenic
TAAGAACAGAAGTGAGTGAT+TGG 0.415750 4_3:+4332164 Msa0625330:CDS
TTTCACGTTGGTTGTGCATT+GGG 0.419977 4_3:+4333505 Msa0625330:three_prime_UTR
CCAATACCATCTGCTTGGTT+AGG 0.422828 4_3:+4333373 Msa0625330:CDS
ATGGAAGTTGGTTGGTTGGT+TGG 0.431534 4_3:-4331933 None:intergenic
TCACCAATCCTTCTCAAACT+TGG 0.431534 4_3:+4332275 Msa0625330:CDS
TGTACATTTAGTGTGTGTTT+GGG 0.435246 4_3:-4333576 None:intergenic
TATTTGTTGACTTATATGTA+AGG 0.446098 4_3:-4332460 None:intergenic
CCTAACCAAGCAGATGGTAT+TGG 0.447991 4_3:-4333373 None:intergenic
ATACTTCACGGAACCATGAT+TGG 0.450822 4_3:+4332585 Msa0625330:CDS
TACAAGTGGATGAGATTGTT+GGG 0.457723 4_3:+4332502 Msa0625330:CDS
ATATGATGACTACATGTCAT+TGG 0.464014 4_3:+4333632 Msa0625330:three_prime_UTR
GAAACATTCGGTTCGGAAAA+GGG 0.464840 4_3:-4332221 None:intergenic
TGTTGGCATGTGCTAAAAGT+AGG 0.469168 4_3:+4333344 Msa0625330:CDS
ACTTTGACTGATCTAGTGTA+AGG 0.474599 4_3:-4333250 None:intergenic
AATCCTTCTCAAACTTGGCC+TGG 0.475632 4_3:+4332280 Msa0625330:CDS
GATGATGGAAGTTGGTTGGT+TGG 0.478335 4_3:-4331937 None:intergenic
GTTTGAGAAGGATTGGTGAA+TGG 0.482486 4_3:-4332271 None:intergenic
ACTTACCTTCTGGCTAAACC+TGG 0.484146 4_3:-4332313 None:intergenic
AGCAGCTTGCCAGAAACATT+CGG 0.484632 4_3:-4332233 None:intergenic
AGGCCAAGTTTGAGAAGGAT+TGG 0.491762 4_3:-4332278 None:intergenic
TCCACCATGAGGAGGCATAA+TGG 0.492329 4_3:-4332562 None:intergenic
TTCAGCCAATACCATCTGCT+TGG 0.495555 4_3:+4333368 Msa0625330:CDS
GCAGATCAGTTTATTGCCAA+TGG 0.496622 4_3:+4332895 Msa0625330:intron
AGATTCGAGATACAAGTTCA+TGG 0.497424 4_3:-4332936 None:intergenic
ACTAATAGAAGAAATCTGTA+TGG 0.499181 4_3:+4332072 Msa0625330:exon
GTTGGATGAAAATATGAGAA+TGG 0.502519 4_3:-4331999 None:intergenic
CTAGATCAGTCAAAGTTCAA+TGG 0.503366 4_3:+4333257 Msa0625330:CDS
ATAGAATGAAGAGAAATTGG+AGG 0.506493 4_3:-4332021 None:intergenic
CCTCATGGTGGAATACTTCA+CGG 0.510920 4_3:+4332573 Msa0625330:CDS
TACGTCTCTTGACTTGCCAT+TGG 0.513346 4_3:-4332911 None:intergenic
CTTGCCAGAAACATTCGGTT+CGG 0.516523 4_3:-4332228 None:intergenic
TGTAGATTATTATGATATGT+TGG 0.518385 4_3:+4333327 Msa0625330:CDS
CTTAAACGCCTTGCACATGA+AGG 0.518985 4_3:+4333009 Msa0625330:CDS
TCCAGATCATGTGATTATAG+AGG 0.519370 4_3:+4332135 Msa0625330:CDS
AATGAAGAGAAATTGGAGGT+TGG 0.520172 4_3:-4332017 None:intergenic
CATGTAGTCATCATATATAA+AGG 0.522666 4_3:-4333625 None:intergenic
GTGAATTGTGCATTGGGAAG+TGG 0.528753 4_3:+4333532 Msa0625330:three_prime_UTR
TTCCACCAGGTTTAGCCAGA+AGG 0.534865 4_3:+4332308 Msa0625330:CDS
AAGGCGTTTAAGTAAGCAAA+AGG 0.541095 4_3:-4332998 None:intergenic
TATGATATGATGATGGAAGT+TGG 0.542835 4_3:-4331945 None:intergenic
CATTTAGTGTGTGTTTGGGA+AGG 0.548836 4_3:-4333572 None:intergenic
AAGAACAGAAGTGAGTGATT+GGG 0.550455 4_3:+4332165 Msa0625330:CDS
GGGGCATGCCATACCAATCA+TGG 0.551161 4_3:-4332598 None:intergenic
CTTTCCATTATGCCTCCTCA+TGG 0.553623 4_3:+4332558 Msa0625330:CDS
AAACCTGGTGGAATAGGTCC+AGG 0.554978 4_3:-4332298 None:intergenic
GGTAGCGTGAATTGTGCATT+GGG 0.561073 4_3:+4333526 Msa0625330:three_prime_UTR
ATACAAGTGGATGAGATTGT+TGG 0.562800 4_3:+4332501 Msa0625330:CDS
CTACATGGTTGAAGCAATCA+CGG 0.564717 4_3:-4333309 None:intergenic
GATTCGAGATACAAGTTCAT+GGG 0.566517 4_3:-4332935 None:intergenic
TGGCCTGGACCTATTCCACC+AGG 0.589884 4_3:+4332295 Msa0625330:CDS
GATCAGTCAAAGTTCAATGG+AGG 0.590714 4_3:+4333260 Msa0625330:CDS
GGGTAGCGTGAATTGTGCAT+TGG 0.595883 4_3:+4333525 Msa0625330:three_prime_UTR
ACATATCATAATAATCTACA+TGG 0.601342 4_3:-4333324 None:intergenic
GGTCCAGGCCAAGTTTGAGA+AGG 0.605621 4_3:-4332283 None:intergenic
ATGATGTTATGATATGATGA+TGG 0.610214 4_3:-4331952 None:intergenic
ATATGATGATGGAAGTTGGT+TGG 0.610833 4_3:-4331941 None:intergenic
ATCAGTCAAAGTTCAATGGA+GGG 0.611627 4_3:+4333261 Msa0625330:CDS
TATCATGTGTGAAGAAGCAG+TGG 0.613560 4_3:+4332194 Msa0625330:CDS
TAATAACCTAACCAAGCAGA+TGG 0.613735 4_3:-4333379 None:intergenic
TTACATCTCCTTCATGTGCA+AGG 0.614326 4_3:-4333017 None:intergenic
TACCTTCTGGCTAAACCTGG+TGG 0.617625 4_3:-4332310 None:intergenic
TCCATTATGCCTCCTCATGG+TGG 0.618370 4_3:+4332561 Msa0625330:CDS
TTCTGATCCTGATATACAAG+TGG 0.625145 4_3:+4332488 Msa0625330:CDS
AGAATGGAGTTTCAAACATG+TGG 0.629676 4_3:-4331983 None:intergenic
TGAAGTATTCCACCATGAGG+AGG 0.648479 4_3:-4332570 None:intergenic
TTGGAGCTTTAGCCAAAACG+TGG 0.682733 4_3:-4333466 None:intergenic
CCGTGAAGTATTCCACCATG+AGG 0.714100 4_3:-4332573 None:intergenic
ATCATGTGTGAAGAAGCAGT+GGG 0.722271 4_3:+4332195 Msa0625330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTTATTATTAATATT+TGG - chr4_3:4331890-4331909 None:intergenic 0.0%
!! TATTATTTATTATTAATATT+TGG - chr4_3:4331890-4331909 None:intergenic 0.0%
!!! TCTATAATTTTCAACATAAT+TGG - chr4_3:4333605-4333624 None:intergenic 15.0%
!!! TCTATAATTTTCAACATAAT+TGG - chr4_3:4333605-4333624 None:intergenic 15.0%
!!! TATTTGTTGACTTATATGTA+AGG - chr4_3:4332463-4332482 None:intergenic 20.0%
!! TTCATTTCAATTAGAATCAT+AGG - chr4_3:4332768-4332787 None:intergenic 20.0%
!! ACATATCATAATAATCTACA+TGG - chr4_3:4333327-4333346 None:intergenic 20.0%
!! TGTAGATTATTATGATATGT+TGG + chr4_3:4333327-4333346 Msa0625330:CDS 20.0%
!!! TTTTTTCATTTTCAACAGTA+TGG - chr4_3:4333445-4333464 None:intergenic 20.0%
!!! TATTTGTTGACTTATATGTA+AGG - chr4_3:4332463-4332482 None:intergenic 20.0%
!! TTCATTTCAATTAGAATCAT+AGG - chr4_3:4332768-4332787 None:intergenic 20.0%
!! ACATATCATAATAATCTACA+TGG - chr4_3:4333327-4333346 None:intergenic 20.0%
!! TGTAGATTATTATGATATGT+TGG + chr4_3:4333327-4333346 Msa0625330:CDS 20.0%
!!! TTTTTTCATTTTCAACAGTA+TGG - chr4_3:4333445-4333464 None:intergenic 20.0%
! ATGATGTTATGATATGATGA+TGG - chr4_3:4331955-4331974 None:intergenic 25.0%
! TAGATAGAATGAAGAGAAAT+TGG - chr4_3:4332027-4332046 None:intergenic 25.0%
! ACTAATAGAAGAAATCTGTA+TGG + chr4_3:4332072-4332091 Msa0625330:exon 25.0%
! TGTAACAACAAAAGTAAAGA+AGG - chr4_3:4332625-4332644 None:intergenic 25.0%
!! CTTATATCTTTATGTCCTTT+TGG + chr4_3:4332645-4332664 Msa0625330:intron 25.0%
!! AATGAATTAGTTCTCTAAGT+TGG + chr4_3:4332782-4332801 Msa0625330:intron 25.0%
! ATTTCTTAGATTTGTGCAAA+AGG + chr4_3:4333112-4333131 Msa0625330:intron 25.0%
!! AAATGAAAAAAACCACGTTT+TGG + chr4_3:4333454-4333473 Msa0625330:three_prime_UTR 25.0%
! CATGTAGTCATCATATATAA+AGG - chr4_3:4333628-4333647 None:intergenic 25.0%
! ATGATGTTATGATATGATGA+TGG - chr4_3:4331955-4331974 None:intergenic 25.0%
! TAGATAGAATGAAGAGAAAT+TGG - chr4_3:4332027-4332046 None:intergenic 25.0%
! ACTAATAGAAGAAATCTGTA+TGG + chr4_3:4332072-4332091 Msa0625330:exon 25.0%
! TGTAACAACAAAAGTAAAGA+AGG - chr4_3:4332625-4332644 None:intergenic 25.0%
!! CTTATATCTTTATGTCCTTT+TGG + chr4_3:4332645-4332664 Msa0625330:intron 25.0%
!! AATGAATTAGTTCTCTAAGT+TGG + chr4_3:4332782-4332801 Msa0625330:intron 25.0%
! ATTTCTTAGATTTGTGCAAA+AGG + chr4_3:4333112-4333131 Msa0625330:intron 25.0%
!! AAATGAAAAAAACCACGTTT+TGG + chr4_3:4333454-4333473 Msa0625330:three_prime_UTR 25.0%
! CATGTAGTCATCATATATAA+AGG - chr4_3:4333628-4333647 None:intergenic 25.0%
!! TATGATATGATGATGGAAGT+TGG - chr4_3:4331948-4331967 None:intergenic 30.0%
GTTGGATGAAAATATGAGAA+TGG - chr4_3:4332002-4332021 None:intergenic 30.0%
ATAGAATGAAGAGAAATTGG+AGG - chr4_3:4332024-4332043 None:intergenic 30.0%
! ATCAAGTTTTACTTACCTTC+TGG - chr4_3:4332326-4332345 None:intergenic 30.0%
GATCAAAGATTGTTACAATC+AGG + chr4_3:4332343-4332362 Msa0625330:intron 30.0%
!! TGTATGTTGATGATTTCAGA+AGG + chr4_3:4332430-4332449 Msa0625330:intron 30.0%
ACAACAAAAGTAAAGAAGGT+GGG - chr4_3:4332621-4332640 None:intergenic 30.0%
AACAACAAAAGTAAAGAAGG+TGG - chr4_3:4332622-4332641 None:intergenic 30.0%
AGGATCAATTCAGTTTGATA+TGG - chr4_3:4332748-4332767 None:intergenic 30.0%
TTGGTTTATCTTGTTCTTGT+TGG + chr4_3:4332801-4332820 Msa0625330:intron 30.0%
AAAGAGACAAAATGTTGATG+AGG - chr4_3:4333180-4333199 None:intergenic 30.0%
! TTTTTGCAATAACTTTCAGC+AGG + chr4_3:4333213-4333232 Msa0625330:intron 30.0%
AACACACACTTAATATGCTT+TGG - chr4_3:4333420-4333439 None:intergenic 30.0%
TGTACATTTAGTGTGTGTTT+GGG - chr4_3:4333579-4333598 None:intergenic 30.0%
TTGTACATTTAGTGTGTGTT+TGG - chr4_3:4333580-4333599 None:intergenic 30.0%
ATATGATGACTACATGTCAT+TGG + chr4_3:4333632-4333651 Msa0625330:three_prime_UTR 30.0%
!! TATGATATGATGATGGAAGT+TGG - chr4_3:4331948-4331967 None:intergenic 30.0%
GTTGGATGAAAATATGAGAA+TGG - chr4_3:4332002-4332021 None:intergenic 30.0%
ATAGAATGAAGAGAAATTGG+AGG - chr4_3:4332024-4332043 None:intergenic 30.0%
! ATCAAGTTTTACTTACCTTC+TGG - chr4_3:4332326-4332345 None:intergenic 30.0%
GATCAAAGATTGTTACAATC+AGG + chr4_3:4332343-4332362 Msa0625330:intron 30.0%
!! TGTATGTTGATGATTTCAGA+AGG + chr4_3:4332430-4332449 Msa0625330:intron 30.0%
ACAACAAAAGTAAAGAAGGT+GGG - chr4_3:4332621-4332640 None:intergenic 30.0%
AACAACAAAAGTAAAGAAGG+TGG - chr4_3:4332622-4332641 None:intergenic 30.0%
AGGATCAATTCAGTTTGATA+TGG - chr4_3:4332748-4332767 None:intergenic 30.0%
TTGGTTTATCTTGTTCTTGT+TGG + chr4_3:4332801-4332820 Msa0625330:intron 30.0%
AAAGAGACAAAATGTTGATG+AGG - chr4_3:4333180-4333199 None:intergenic 30.0%
! TTTTTGCAATAACTTTCAGC+AGG + chr4_3:4333213-4333232 Msa0625330:intron 30.0%
AACACACACTTAATATGCTT+TGG - chr4_3:4333420-4333439 None:intergenic 30.0%
TGTACATTTAGTGTGTGTTT+GGG - chr4_3:4333579-4333598 None:intergenic 30.0%
TTGTACATTTAGTGTGTGTT+TGG - chr4_3:4333580-4333599 None:intergenic 30.0%
ATATGATGACTACATGTCAT+TGG + chr4_3:4333632-4333651 Msa0625330:three_prime_UTR 30.0%
!! ATATGATGATGGAAGTTGGT+TGG - chr4_3:4331944-4331963 None:intergenic 35.0%
AGAATGGAGTTTCAAACATG+TGG - chr4_3:4331986-4332005 None:intergenic 35.0%
AATGAAGAGAAATTGGAGGT+TGG - chr4_3:4332020-4332039 None:intergenic 35.0%
TCCAGATCATGTGATTATAG+AGG + chr4_3:4332135-4332154 Msa0625330:CDS 35.0%
ACCTCTATAATCACATGATC+TGG - chr4_3:4332139-4332158 None:intergenic 35.0%
TAAGAACAGAAGTGAGTGAT+TGG + chr4_3:4332164-4332183 Msa0625330:CDS 35.0%
AAGAACAGAAGTGAGTGATT+GGG + chr4_3:4332165-4332184 Msa0625330:CDS 35.0%
! TTACAATCAGGATTCGAGTT+CGG + chr4_3:4332355-4332374 Msa0625330:intron 35.0%
TGATGATTTCAGAAGGTTCA+TGG + chr4_3:4332437-4332456 Msa0625330:intron 35.0%
TTCTGATCCTGATATACAAG+TGG + chr4_3:4332488-4332507 Msa0625330:CDS 35.0%
ATCTCATCCACTTGTATATC+AGG - chr4_3:4332498-4332517 None:intergenic 35.0%
ATACAAGTGGATGAGATTGT+TGG + chr4_3:4332501-4332520 Msa0625330:CDS 35.0%
TACAAGTGGATGAGATTGTT+GGG + chr4_3:4332502-4332521 Msa0625330:CDS 35.0%
CAACAAAAGTAAAGAAGGTG+GGG - chr4_3:4332620-4332639 None:intergenic 35.0%
TTGTTACGGGATAAACCAAA+AGG - chr4_3:4332663-4332682 None:intergenic 35.0%
ACTCGACATAAGAGTTGTTA+CGG - chr4_3:4332677-4332696 None:intergenic 35.0%
!! ACTCTTATGTCGAGTTTTGT+AGG + chr4_3:4332682-4332701 Msa0625330:intron 35.0%
TTGTAGGAGAGAGGTTAATA+TGG + chr4_3:4332698-4332717 Msa0625330:intron 35.0%
GATTCGAGATACAAGTTCAT+GGG - chr4_3:4332938-4332957 None:intergenic 35.0%
AGATTCGAGATACAAGTTCA+TGG - chr4_3:4332939-4332958 None:intergenic 35.0%
ATGAACTTGTATCTCGAATC+TGG + chr4_3:4332938-4332957 Msa0625330:CDS 35.0%
! AAGGCGTTTAAGTAAGCAAA+AGG - chr4_3:4333001-4333020 None:intergenic 35.0%
ACTGATCTAGTGTAAGGATA+TGG - chr4_3:4333247-4333266 None:intergenic 35.0%
ACTTTGACTGATCTAGTGTA+AGG - chr4_3:4333253-4333272 None:intergenic 35.0%
CTAGATCAGTCAAAGTTCAA+TGG + chr4_3:4333257-4333276 Msa0625330:CDS 35.0%
ATCAGTCAAAGTTCAATGGA+GGG + chr4_3:4333261-4333280 Msa0625330:CDS 35.0%
TAATAACCTAACCAAGCAGA+TGG - chr4_3:4333382-4333401 None:intergenic 35.0%
!! TTTTGGCTAAAGCTCCAATT+TGG + chr4_3:4333471-4333490 Msa0625330:three_prime_UTR 35.0%
AAAAAGCAGAAGCTCCAAAT+TGG - chr4_3:4333488-4333507 None:intergenic 35.0%
!! ATATGATGATGGAAGTTGGT+TGG - chr4_3:4331944-4331963 None:intergenic 35.0%
AGAATGGAGTTTCAAACATG+TGG - chr4_3:4331986-4332005 None:intergenic 35.0%
AATGAAGAGAAATTGGAGGT+TGG - chr4_3:4332020-4332039 None:intergenic 35.0%
TCCAGATCATGTGATTATAG+AGG + chr4_3:4332135-4332154 Msa0625330:CDS 35.0%
ACCTCTATAATCACATGATC+TGG - chr4_3:4332139-4332158 None:intergenic 35.0%
TAAGAACAGAAGTGAGTGAT+TGG + chr4_3:4332164-4332183 Msa0625330:CDS 35.0%
AAGAACAGAAGTGAGTGATT+GGG + chr4_3:4332165-4332184 Msa0625330:CDS 35.0%
! TTACAATCAGGATTCGAGTT+CGG + chr4_3:4332355-4332374 Msa0625330:intron 35.0%
TGATGATTTCAGAAGGTTCA+TGG + chr4_3:4332437-4332456 Msa0625330:intron 35.0%
TTCTGATCCTGATATACAAG+TGG + chr4_3:4332488-4332507 Msa0625330:CDS 35.0%
ATCTCATCCACTTGTATATC+AGG - chr4_3:4332498-4332517 None:intergenic 35.0%
ATACAAGTGGATGAGATTGT+TGG + chr4_3:4332501-4332520 Msa0625330:CDS 35.0%
TACAAGTGGATGAGATTGTT+GGG + chr4_3:4332502-4332521 Msa0625330:CDS 35.0%
CAACAAAAGTAAAGAAGGTG+GGG - chr4_3:4332620-4332639 None:intergenic 35.0%
TTGTTACGGGATAAACCAAA+AGG - chr4_3:4332663-4332682 None:intergenic 35.0%
ACTCGACATAAGAGTTGTTA+CGG - chr4_3:4332677-4332696 None:intergenic 35.0%
!! ACTCTTATGTCGAGTTTTGT+AGG + chr4_3:4332682-4332701 Msa0625330:intron 35.0%
TTGTAGGAGAGAGGTTAATA+TGG + chr4_3:4332698-4332717 Msa0625330:intron 35.0%
GATTCGAGATACAAGTTCAT+GGG - chr4_3:4332938-4332957 None:intergenic 35.0%
AGATTCGAGATACAAGTTCA+TGG - chr4_3:4332939-4332958 None:intergenic 35.0%
ATGAACTTGTATCTCGAATC+TGG + chr4_3:4332938-4332957 Msa0625330:CDS 35.0%
! AAGGCGTTTAAGTAAGCAAA+AGG - chr4_3:4333001-4333020 None:intergenic 35.0%
ACTGATCTAGTGTAAGGATA+TGG - chr4_3:4333247-4333266 None:intergenic 35.0%
ACTTTGACTGATCTAGTGTA+AGG - chr4_3:4333253-4333272 None:intergenic 35.0%
CTAGATCAGTCAAAGTTCAA+TGG + chr4_3:4333257-4333276 Msa0625330:CDS 35.0%
ATCAGTCAAAGTTCAATGGA+GGG + chr4_3:4333261-4333280 Msa0625330:CDS 35.0%
TAATAACCTAACCAAGCAGA+TGG - chr4_3:4333382-4333401 None:intergenic 35.0%
!! TTTTGGCTAAAGCTCCAATT+TGG + chr4_3:4333471-4333490 Msa0625330:three_prime_UTR 35.0%
AAAAAGCAGAAGCTCCAAAT+TGG - chr4_3:4333488-4333507 None:intergenic 35.0%
TATCATGTGTGAAGAAGCAG+TGG + chr4_3:4332194-4332213 Msa0625330:CDS 40.0%
ATCATGTGTGAAGAAGCAGT+GGG + chr4_3:4332195-4332214 Msa0625330:CDS 40.0%
!! GAAACATTCGGTTCGGAAAA+GGG - chr4_3:4332224-4332243 None:intergenic 40.0%
!! AGAAACATTCGGTTCGGAAA+AGG - chr4_3:4332225-4332244 None:intergenic 40.0%
! TTTTCCGAACCGAATGTTTC+TGG + chr4_3:4332224-4332243 Msa0625330:CDS 40.0%
! GTTTGAGAAGGATTGGTGAA+TGG - chr4_3:4332274-4332293 None:intergenic 40.0%
TCACCAATCCTTCTCAAACT+TGG + chr4_3:4332275-4332294 Msa0625330:CDS 40.0%
ATACTTCACGGAACCATGAT+TGG + chr4_3:4332585-4332604 Msa0625330:CDS 40.0%
CTCGACATAAGAGTTGTTAC+GGG - chr4_3:4332676-4332695 None:intergenic 40.0%
GCAGATCAGTTTATTGCCAA+TGG + chr4_3:4332895-4332914 Msa0625330:intron 40.0%
!! GCTTGCTGTTCTTGACAATT+TGG + chr4_3:4332960-4332979 Msa0625330:CDS 40.0%
TTACATCTCCTTCATGTGCA+AGG - chr4_3:4333020-4333039 None:intergenic 40.0%
GATCAGTCAAAGTTCAATGG+AGG + chr4_3:4333260-4333279 Msa0625330:CDS 40.0%
CTACATGGTTGAAGCAATCA+CGG - chr4_3:4333312-4333331 None:intergenic 40.0%
TGTTGGCATGTGCTAAAAGT+AGG + chr4_3:4333344-4333363 Msa0625330:CDS 40.0%
!! TTTTCACGTTGGTTGTGCAT+TGG + chr4_3:4333504-4333523 Msa0625330:three_prime_UTR 40.0%
! TTTCACGTTGGTTGTGCATT+GGG + chr4_3:4333505-4333524 Msa0625330:three_prime_UTR 40.0%
CATTTAGTGTGTGTTTGGGA+AGG - chr4_3:4333575-4333594 None:intergenic 40.0%
TATCATGTGTGAAGAAGCAG+TGG + chr4_3:4332194-4332213 Msa0625330:CDS 40.0%
ATCATGTGTGAAGAAGCAGT+GGG + chr4_3:4332195-4332214 Msa0625330:CDS 40.0%
!! GAAACATTCGGTTCGGAAAA+GGG - chr4_3:4332224-4332243 None:intergenic 40.0%
!! AGAAACATTCGGTTCGGAAA+AGG - chr4_3:4332225-4332244 None:intergenic 40.0%
! TTTTCCGAACCGAATGTTTC+TGG + chr4_3:4332224-4332243 Msa0625330:CDS 40.0%
! GTTTGAGAAGGATTGGTGAA+TGG - chr4_3:4332274-4332293 None:intergenic 40.0%
TCACCAATCCTTCTCAAACT+TGG + chr4_3:4332275-4332294 Msa0625330:CDS 40.0%
ATACTTCACGGAACCATGAT+TGG + chr4_3:4332585-4332604 Msa0625330:CDS 40.0%
CTCGACATAAGAGTTGTTAC+GGG - chr4_3:4332676-4332695 None:intergenic 40.0%
GCAGATCAGTTTATTGCCAA+TGG + chr4_3:4332895-4332914 Msa0625330:intron 40.0%
!! GCTTGCTGTTCTTGACAATT+TGG + chr4_3:4332960-4332979 Msa0625330:CDS 40.0%
TTACATCTCCTTCATGTGCA+AGG - chr4_3:4333020-4333039 None:intergenic 40.0%
GATCAGTCAAAGTTCAATGG+AGG + chr4_3:4333260-4333279 Msa0625330:CDS 40.0%
CTACATGGTTGAAGCAATCA+CGG - chr4_3:4333312-4333331 None:intergenic 40.0%
TGTTGGCATGTGCTAAAAGT+AGG + chr4_3:4333344-4333363 Msa0625330:CDS 40.0%
!! TTTTCACGTTGGTTGTGCAT+TGG + chr4_3:4333504-4333523 Msa0625330:three_prime_UTR 40.0%
! TTTCACGTTGGTTGTGCATT+GGG + chr4_3:4333505-4333524 Msa0625330:three_prime_UTR 40.0%
CATTTAGTGTGTGTTTGGGA+AGG - chr4_3:4333575-4333594 None:intergenic 40.0%
! ATGGAAGTTGGTTGGTTGGT+TGG - chr4_3:4331936-4331955 None:intergenic 45.0%
!! GATGATGGAAGTTGGTTGGT+TGG - chr4_3:4331940-4331959 None:intergenic 45.0%
CTTGCCAGAAACATTCGGTT+CGG - chr4_3:4332231-4332250 None:intergenic 45.0%
AGCAGCTTGCCAGAAACATT+CGG - chr4_3:4332236-4332255 None:intergenic 45.0%
AGGCCAAGTTTGAGAAGGAT+TGG - chr4_3:4332281-4332300 None:intergenic 45.0%
AATCCTTCTCAAACTTGGCC+TGG + chr4_3:4332280-4332299 Msa0625330:CDS 45.0%
! ACTTACCTTCTGGCTAAACC+TGG - chr4_3:4332316-4332335 None:intergenic 45.0%
CTTTCCATTATGCCTCCTCA+TGG + chr4_3:4332558-4332577 Msa0625330:CDS 45.0%
! TGAAGTATTCCACCATGAGG+AGG - chr4_3:4332573-4332592 None:intergenic 45.0%
! CCTCATGGTGGAATACTTCA+CGG + chr4_3:4332573-4332592 Msa0625330:CDS 45.0%
TCACGGAACCATGATTGGTA+TGG + chr4_3:4332590-4332609 Msa0625330:intron 45.0%
!! TGTCGAGTTTTGTAGGAGAG+AGG + chr4_3:4332689-4332708 Msa0625330:intron 45.0%
!! TACGTCTCTTGACTTGCCAT+TGG - chr4_3:4332914-4332933 None:intergenic 45.0%
CTTAAACGCCTTGCACATGA+AGG + chr4_3:4333009-4333028 Msa0625330:CDS 45.0%
TTCAGCCAATACCATCTGCT+TGG + chr4_3:4333368-4333387 Msa0625330:CDS 45.0%
CCTAACCAAGCAGATGGTAT+TGG - chr4_3:4333376-4333395 None:intergenic 45.0%
CCAATACCATCTGCTTGGTT+AGG + chr4_3:4333373-4333392 Msa0625330:CDS 45.0%
! TTGGAGCTTTAGCCAAAACG+TGG - chr4_3:4333469-4333488 None:intergenic 45.0%
!!! GAGCTTCTGCTTTTTCACGT+TGG + chr4_3:4333493-4333512 Msa0625330:three_prime_UTR 45.0%
GGTAGCGTGAATTGTGCATT+GGG + chr4_3:4333526-4333545 Msa0625330:three_prime_UTR 45.0%
GTGAATTGTGCATTGGGAAG+TGG + chr4_3:4333532-4333551 Msa0625330:three_prime_UTR 45.0%
! TGTGTGTTTGGGAAGGCTTT+TGG - chr4_3:4333568-4333587 None:intergenic 45.0%
! ATGGAAGTTGGTTGGTTGGT+TGG - chr4_3:4331936-4331955 None:intergenic 45.0%
!! GATGATGGAAGTTGGTTGGT+TGG - chr4_3:4331940-4331959 None:intergenic 45.0%
CTTGCCAGAAACATTCGGTT+CGG - chr4_3:4332231-4332250 None:intergenic 45.0%
AGCAGCTTGCCAGAAACATT+CGG - chr4_3:4332236-4332255 None:intergenic 45.0%
AGGCCAAGTTTGAGAAGGAT+TGG - chr4_3:4332281-4332300 None:intergenic 45.0%
AATCCTTCTCAAACTTGGCC+TGG + chr4_3:4332280-4332299 Msa0625330:CDS 45.0%
! ACTTACCTTCTGGCTAAACC+TGG - chr4_3:4332316-4332335 None:intergenic 45.0%
CTTTCCATTATGCCTCCTCA+TGG + chr4_3:4332558-4332577 Msa0625330:CDS 45.0%
! TGAAGTATTCCACCATGAGG+AGG - chr4_3:4332573-4332592 None:intergenic 45.0%
! CCTCATGGTGGAATACTTCA+CGG + chr4_3:4332573-4332592 Msa0625330:CDS 45.0%
TCACGGAACCATGATTGGTA+TGG + chr4_3:4332590-4332609 Msa0625330:intron 45.0%
!! TGTCGAGTTTTGTAGGAGAG+AGG + chr4_3:4332689-4332708 Msa0625330:intron 45.0%
!! TACGTCTCTTGACTTGCCAT+TGG - chr4_3:4332914-4332933 None:intergenic 45.0%
CTTAAACGCCTTGCACATGA+AGG + chr4_3:4333009-4333028 Msa0625330:CDS 45.0%
TTCAGCCAATACCATCTGCT+TGG + chr4_3:4333368-4333387 Msa0625330:CDS 45.0%
CCTAACCAAGCAGATGGTAT+TGG - chr4_3:4333376-4333395 None:intergenic 45.0%
CCAATACCATCTGCTTGGTT+AGG + chr4_3:4333373-4333392 Msa0625330:CDS 45.0%
! TTGGAGCTTTAGCCAAAACG+TGG - chr4_3:4333469-4333488 None:intergenic 45.0%
!!! GAGCTTCTGCTTTTTCACGT+TGG + chr4_3:4333493-4333512 Msa0625330:three_prime_UTR 45.0%
GGTAGCGTGAATTGTGCATT+GGG + chr4_3:4333526-4333545 Msa0625330:three_prime_UTR 45.0%
GTGAATTGTGCATTGGGAAG+TGG + chr4_3:4333532-4333551 Msa0625330:three_prime_UTR 45.0%
! TGTGTGTTTGGGAAGGCTTT+TGG - chr4_3:4333568-4333587 None:intergenic 45.0%
!! AAATAATGATAAAAATATAT+AGG - chr4_3:4333096-4333115 None:intergenic 5.0%
!! AAATAATGATAAAAATATAT+AGG - chr4_3:4333096-4333115 None:intergenic 5.0%
AAACCTGGTGGAATAGGTCC+AGG - chr4_3:4332301-4332320 None:intergenic 50.0%
CTGGCTAAACCTGGTGGAAT+AGG - chr4_3:4332307-4332326 None:intergenic 50.0%
TTCCACCAGGTTTAGCCAGA+AGG + chr4_3:4332308-4332327 Msa0625330:CDS 50.0%
! TACCTTCTGGCTAAACCTGG+TGG - chr4_3:4332313-4332332 None:intergenic 50.0%
TCCATTATGCCTCCTCATGG+TGG + chr4_3:4332561-4332580 Msa0625330:CDS 50.0%
! TCCACCATGAGGAGGCATAA+TGG - chr4_3:4332565-4332584 None:intergenic 50.0%
! CCGTGAAGTATTCCACCATG+AGG - chr4_3:4332576-4332595 None:intergenic 50.0%
GGTCGCCCATAATCTAGCAA+AGG + chr4_3:4332719-4332738 Msa0625330:intron 50.0%
CGCCCATAATCTAGCAAAGG+CGG + chr4_3:4332722-4332741 Msa0625330:intron 50.0%
GGCCGCCTTTGCTAGATTAT+GGG - chr4_3:4332727-4332746 None:intergenic 50.0%
TGGCCGCCTTTGCTAGATTA+TGG - chr4_3:4332728-4332747 None:intergenic 50.0%
GGGTAGCGTGAATTGTGCAT+TGG + chr4_3:4333525-4333544 Msa0625330:three_prime_UTR 50.0%
AAACCTGGTGGAATAGGTCC+AGG - chr4_3:4332301-4332320 None:intergenic 50.0%
CTGGCTAAACCTGGTGGAAT+AGG - chr4_3:4332307-4332326 None:intergenic 50.0%
TTCCACCAGGTTTAGCCAGA+AGG + chr4_3:4332308-4332327 Msa0625330:CDS 50.0%
! TACCTTCTGGCTAAACCTGG+TGG - chr4_3:4332313-4332332 None:intergenic 50.0%
TCCATTATGCCTCCTCATGG+TGG + chr4_3:4332561-4332580 Msa0625330:CDS 50.0%
! TCCACCATGAGGAGGCATAA+TGG - chr4_3:4332565-4332584 None:intergenic 50.0%
! CCGTGAAGTATTCCACCATG+AGG - chr4_3:4332576-4332595 None:intergenic 50.0%
GGTCGCCCATAATCTAGCAA+AGG + chr4_3:4332719-4332738 Msa0625330:intron 50.0%
CGCCCATAATCTAGCAAAGG+CGG + chr4_3:4332722-4332741 Msa0625330:intron 50.0%
GGCCGCCTTTGCTAGATTAT+GGG - chr4_3:4332727-4332746 None:intergenic 50.0%
TGGCCGCCTTTGCTAGATTA+TGG - chr4_3:4332728-4332747 None:intergenic 50.0%
GGGTAGCGTGAATTGTGCAT+TGG + chr4_3:4333525-4333544 Msa0625330:three_prime_UTR 50.0%
GGTCCAGGCCAAGTTTGAGA+AGG - chr4_3:4332286-4332305 None:intergenic 55.0%
GGGGCATGCCATACCAATCA+TGG - chr4_3:4332601-4332620 None:intergenic 55.0%
GGTCCAGGCCAAGTTTGAGA+AGG - chr4_3:4332286-4332305 None:intergenic 55.0%
GGGGCATGCCATACCAATCA+TGG - chr4_3:4332601-4332620 None:intergenic 55.0%
TGGCCTGGACCTATTCCACC+AGG + chr4_3:4332295-4332314 Msa0625330:CDS 60.0%
TGGCCTGGACCTATTCCACC+AGG + chr4_3:4332295-4332314 Msa0625330:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 4331846 4333672 4331846 ID=Msa0625330;Name=Msa0625330
chr4_3 mRNA 4331846 4333672 4331846 ID=Msa0625330-mRNA-1;Parent=Msa0625330;Name=Msa0625330-mRNA-1;_AED=0.11;_eAED=0.11;_QI=245|1|1|1|1|1|4|270|234
chr4_3 exon 4331846 4332329 4331846 ID=Msa0625330-mRNA-1:exon:1120;Parent=Msa0625330-mRNA-1
chr4_3 exon 4332449 4332606 4332449 ID=Msa0625330-mRNA-1:exon:1121;Parent=Msa0625330-mRNA-1
chr4_3 exon 4332899 4333035 4332899 ID=Msa0625330-mRNA-1:exon:1122;Parent=Msa0625330-mRNA-1
chr4_3 exon 4333232 4333672 4333232 ID=Msa0625330-mRNA-1:exon:1123;Parent=Msa0625330-mRNA-1
chr4_3 five_prime_UTR 4331846 4332090 4331846 ID=Msa0625330-mRNA-1:five_prime_utr;Parent=Msa0625330-mRNA-1
chr4_3 CDS 4332091 4332329 4332091 ID=Msa0625330-mRNA-1:cds;Parent=Msa0625330-mRNA-1
chr4_3 CDS 4332449 4332606 4332449 ID=Msa0625330-mRNA-1:cds;Parent=Msa0625330-mRNA-1
chr4_3 CDS 4332899 4333035 4332899 ID=Msa0625330-mRNA-1:cds;Parent=Msa0625330-mRNA-1
chr4_3 CDS 4333232 4333402 4333232 ID=Msa0625330-mRNA-1:cds;Parent=Msa0625330-mRNA-1
chr4_3 three_prime_UTR 4333403 4333672 4333403 ID=Msa0625330-mRNA-1:three_prime_utr;Parent=Msa0625330-mRNA-1
Gene Sequence

>Msa0625330

ATGGAGAGTAAAAATTCAAAAGAGATAATTGATATAGAGAAACTTCCAGATCATGTGATTATAGAGGTATTCATAAGAACAGAAGTGAGTGATTGGGCACAAATATCATGTGTGAAGAAGCAGTGGGCTTCCCTTTTCCGAACCGAATGTTTCTGGCAAGCTGCTCTTTCTCACATCTATCCATTCACCAATCCTTCTCAAACTTGGCCTGGACCTATTCCACCAGGTTTAGCCAGAAGAAGGTTCATGGCCTTACATATAAGTCAACAAATATTTGCTTCTGATCCTGATATACAAGTGGATGAGATTGTTGGGCATAGTTATCTGTTTTTGAAAGAGCAGCTTCAACTTTCCATTATGCCTCCTCATGGTGGAATACTTCACGGAACCATGATTGATCAGTTTATTGCCAATGGCAAGTCAAGAGACGTAGCCCATGAACTTGTATCTCGAATCTGGCTTGCTGTTCTTGACAATTTGGAAGAAAATCAGCATACCTTTTGCTTACTTAAACGCCTTGCACATGAAGGAGATCAGGTTTTTCTTCCATATCCTTACACTAGATCAGTCAAAGTTCAATGGAGGGTGTTTGAGAAGCTTTTTACTGATTTCCGTGATTGCTTCAACCATGTAGATTATTATGATATGTTGGCATGTGCTAAAAGTAGGTTTCAGCCAATACCATCTGCTTGGTTAGGTTATTAG

Protein sequence

>Msa0625330

MESKNSKEIIDIEKLPDHVIIEVFIRTEVSDWAQISCVKKQWASLFRTECFWQAALSHIYPFTNPSQTWPGPIPPGLARRRFMALHISQQIFASDPDIQVDEIVGHSYLFLKEQLQLSIMPPHGGILHGTMIDQFIANGKSRDVAHELVSRIWLAVLDNLEENQHTFCLLKRLAHEGDQVFLPYPYTRSVKVQWRVFEKLFTDFRDCFNHVDYYDMLACAKSRFQPIPSAWLGY*