AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017130 MtrunA17_Chr1g0168611 92.230 296 22 1 1 295 1 296 5.89e-180 498
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017130 AT3G04310.1 35.165 182 101 4 122 295 96 268 1.06e-24 100
Msa0017130 AT3G04310.2 35.165 182 101 4 122 295 96 268 1.06e-24 100
Msa0017130 AT2G33250.1 37.968 187 102 4 112 295 123 298 1.31e-18 84.3

Find 99 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGGCAATTGAGAAATTA+TGG 0.159956 1_1:+28384454 Msa0017130:CDS
AAAATTGAAATTTGCTTATA+GGG 0.182337 1_1:-28385038 None:intergenic
AGAAGGAAATAGTGGAATTT+TGG 0.185084 1_1:+28380868 Msa0017130:CDS
TTTACATCTTCCTTGTATTA+AGG 0.252106 1_1:+28385061 Msa0017130:three_prime_UTR
AAATTTGCTTATAGGGAGTA+TGG 0.290323 1_1:-28385031 None:intergenic
AATTTATGTTCATCAGATAA+TGG 0.321659 1_1:+28385120 Msa0017130:three_prime_UTR
AGCCGAGATGCACCAAGTTT+TGG 0.334550 1_1:+28384645 Msa0017130:CDS
GCTTGTGATCTCCTTGTTGT+TGG 0.370031 1_1:-28384696 None:intergenic
ATGAGAGTGTATGTGATAGA+TGG 0.384204 1_1:+28380532 Msa0017130:exon
TTCATCCTATACTTGCGCTT+TGG 0.407380 1_1:-28384495 None:intergenic
ACTGAAGAAGAAGGAAATAG+TGG 0.413376 1_1:+28380860 Msa0017130:CDS
TGAGGAGAATAGAGAGGTTG+AGG 0.416126 1_1:-28380617 None:intergenic
AATGCCATGAGGAAAGCTTT+TGG 0.417045 1_1:-28384402 None:intergenic
TAGAGAGGTTGAGGTGGTCG+AGG 0.426093 1_1:-28380608 None:intergenic
AAGATGCTTTAGATAGTTTG+TGG 0.431159 1_1:+28380891 Msa0017130:CDS
TGTGTACCTGTCATTGTTGT+AGG 0.434258 1_1:+28385006 Msa0017130:three_prime_UTR
AGGGTCACAAAGGATGAATA+TGG 0.435338 1_1:+28384725 Msa0017130:CDS
TGCCAAGGCACCACATTCCT+TGG 0.435862 1_1:+28380578 Msa0017130:CDS
GAGGTTGAGGTGGTCGAGGA+AGG 0.436766 1_1:-28380604 None:intergenic
TTGTTGAAGTTGAAGTTTGA+GGG 0.437812 1_1:-28380740 None:intergenic
ATATAATCACATGATGTTGT+AGG 0.443027 1_1:+28384970 Msa0017130:three_prime_UTR
CTTGCGCTTTGGTTTGCTCT+CGG 0.443826 1_1:-28384484 None:intergenic
ACTGGCAATTGAGAAATTAT+GGG 0.445083 1_1:+28384455 Msa0017130:CDS
ATCTTGTTCAATCACATGTT+GGG 0.448449 1_1:-28385086 None:intergenic
CTCGTGTGTCATTCACATTT+CGG 0.452063 1_1:-28384527 None:intergenic
CAACCATGATGCAAGGATGA+TGG 0.466104 1_1:-28384367 None:intergenic
AAAACTAATACGAGGAAGGC+GGG 0.468188 1_1:+28384576 Msa0017130:CDS
GCAAACCAAAGCGCAAGTAT+AGG 0.470582 1_1:+28384490 Msa0017130:CDS
TGGAAAGTGGTAGGTTGAGT+AGG 0.473865 1_1:+28384745 Msa0017130:CDS
GCATCATGGTTGCTTTCTAC+CGG 0.476024 1_1:+28384378 Msa0017130:CDS
TCTTCTTCATCTTCATCAAG+AGG 0.476893 1_1:-28380776 None:intergenic
GGAAGGCGGGGATGCAGTCG+TGG 0.477673 1_1:+28384589 Msa0017130:CDS
ATTCCAACGTGGGAAGTTGT+TGG 0.485053 1_1:-28380696 None:intergenic
GGGATGACTTGGAGCGAGCT+CGG 0.485131 1_1:+28384673 Msa0017130:CDS
TCATCCCATCCACCAAAACT+TGG 0.498543 1_1:-28384657 None:intergenic
GCTATACATTGTATCTATTG+TGG 0.500396 1_1:-28384947 None:intergenic
CATCTTGTTCAATCACATGT+TGG 0.503259 1_1:-28385087 None:intergenic
CACCAAAACTTGGTGCATCT+CGG 0.507741 1_1:-28384647 None:intergenic
GAACTTGAGCTTTGATGTGT+TGG 0.513641 1_1:+28384871 Msa0017130:three_prime_UTR
AGATAGTTTGTGGATTCTCA+AGG 0.515626 1_1:+28380901 Msa0017130:CDS
CAGTCAGTCAGCACTTGCAC+TGG 0.515720 1_1:+28384437 Msa0017130:CDS
GAAAAGGGTCGCCATGGATG+AGG 0.517568 1_1:-28380635 None:intergenic
TCTTGATGAAGATGAAGAAG+AGG 0.529588 1_1:+28380778 Msa0017130:CDS
GCTGTAAAAGTCTCCTCCAT+AGG 0.531126 1_1:+28384848 Msa0017130:exon
ATCAAAGCTCAAGTTCCCTA+TGG 0.534478 1_1:-28384864 None:intergenic
CTGTAAAAGTCTCCTCCATA+GGG 0.535434 1_1:+28384849 Msa0017130:exon
GGGTCGAAAAGTGTCATCAT+TGG 0.539448 1_1:-28380720 None:intergenic
ATGGATCCTACAACAATGAC+AGG 0.540589 1_1:-28385012 None:intergenic
GGAGATCACAAGCAAGGAAA+GGG 0.542632 1_1:+28384706 Msa0017130:CDS
AACCATGATGCAAGGATGAT+GGG 0.544823 1_1:-28384366 None:intergenic
CTCTCTATTCTCCTCATCCA+TGG 0.547693 1_1:+28380624 Msa0017130:CDS
ATGTGGTGCCTTGGCAGTAG+TGG 0.548978 1_1:-28380571 None:intergenic
CACACGAGTTGATGAAGAGC+CGG 0.549575 1_1:+28384542 Msa0017130:CDS
GACCAAGGAATGTGGTGCCT+TGG 0.556279 1_1:-28380580 None:intergenic
ATTGTTGAAGTTGAAGTTTG+AGG 0.557898 1_1:-28380741 None:intergenic
CCAACGTGGGAAGTTGTTGG+AGG 0.558713 1_1:-28380693 None:intergenic
AGGAGATCACAAGCAAGGAA+AGG 0.559152 1_1:+28384705 Msa0017130:CDS
CAAAGGATGAATATGGAAAG+TGG 0.560093 1_1:+28384732 Msa0017130:CDS
ACAGAAGAAACTGAAGAAGA+AGG 0.561811 1_1:+28380851 Msa0017130:CDS
AACAACGGTTCGATTGATAG+TGG 0.562365 1_1:+28384621 Msa0017130:CDS
GGAGAATAGAGAGGTTGAGG+TGG 0.569721 1_1:-28380614 None:intergenic
TGCCCATCATCCTTGCATCA+TGG 0.572196 1_1:+28384364 Msa0017130:CDS
TAGCGATAAGCAATCGAACC+AGG 0.583165 1_1:-28384794 None:intergenic
AGCGCAAGTATAGGATGAAG+AGG 0.587300 1_1:+28384499 Msa0017130:CDS
GATAAGCAATCGAACCAGGA+GGG 0.587980 1_1:-28384790 None:intergenic
GAAGGCGGGGATGCAGTCGT+GGG 0.589601 1_1:+28384590 Msa0017130:CDS
AATTTGTGAAGAAGAGAAGA+TGG 0.593270 1_1:+28380813 Msa0017130:CDS
ATAAGCAATCGAACCAGGAG+GGG 0.596728 1_1:-28384789 None:intergenic
GGATGAATATGGAAAGTGGT+AGG 0.598330 1_1:+28384736 Msa0017130:CDS
TTTGTGGAAAAGGGTCGCCA+TGG 0.601359 1_1:-28380641 None:intergenic
CCTCCAACAACTTCCCACGT+TGG 0.603293 1_1:+28380693 Msa0017130:CDS
CAACAAGGAGATCACAAGCA+AGG 0.612370 1_1:+28384700 Msa0017130:CDS
CGGCCCAAAAGCTTTCCTCA+TGG 0.614363 1_1:+28384398 Msa0017130:CDS
CAATTGAGAAATTATGGGGA+CGG 0.615205 1_1:+28384460 Msa0017130:CDS
CATCAACACCACTACTGCCA+AGG 0.619463 1_1:+28380563 Msa0017130:CDS
AGCGAGCTCGGCCAACAACA+AGG 0.619530 1_1:+28384685 Msa0017130:CDS
AGGAAGGTGACCAAGGAATG+TGG 0.624355 1_1:-28380588 None:intergenic
TAGAAAGCAACCATGATGCA+AGG 0.624556 1_1:-28384374 None:intergenic
CCAGAAAACTAATACGAGGA+AGG 0.626614 1_1:+28384572 Msa0017130:CDS
ATGTTGGGCACCTTAATACA+AGG 0.627997 1_1:-28385071 None:intergenic
GAAAACTAATACGAGGAAGG+CGG 0.630480 1_1:+28384575 Msa0017130:CDS
TTGTGAAGAAGAGAAGATGG+TGG 0.634728 1_1:+28380816 Msa0017130:CDS
AAACTAATACGAGGAAGGCG+GGG 0.635407 1_1:+28384577 Msa0017130:CDS
AAAGCTCAAGTTCCCTATGG+AGG 0.641736 1_1:-28384861 None:intergenic
AAGCAAGGAAAGGGTCACAA+AGG 0.643486 1_1:+28384715 Msa0017130:CDS
CAACATGTGATTGAACAAGA+TGG 0.649664 1_1:+28385088 Msa0017130:three_prime_UTR
GTGGTCGAGGAAGGTGACCA+AGG 0.650423 1_1:-28380595 None:intergenic
CTGGCAATTGAGAAATTATG+GGG 0.651354 1_1:+28384456 Msa0017130:CDS
GCAAGTGCTGACTGACTGAG+AGG 0.659866 1_1:-28384432 None:intergenic
GATACGCGAGAATGAGACAT+GGG 0.670752 1_1:-28380665 None:intergenic
CATGGATGAGGAGAATAGAG+AGG 0.676726 1_1:-28380623 None:intergenic
CAAGTGCTGACTGACTGAGA+GGG 0.679661 1_1:-28384431 None:intergenic
AGATACGCGAGAATGAGACA+TGG 0.683428 1_1:-28380666 None:intergenic
CGATAAGCAATCGAACCAGG+AGG 0.690202 1_1:-28384791 None:intergenic
CATCATTGGAATTCCAACGT+GGG 0.700259 1_1:-28380706 None:intergenic
GAGGGATTGCTAATGCCATG+AGG 0.724452 1_1:-28384413 None:intergenic
TCATCATTGGAATTCCAACG+TGG 0.727073 1_1:-28380707 None:intergenic
TCGTGGGTAGTTGAAAACAA+CGG 0.734928 1_1:+28384606 Msa0017130:CDS
AAAACCAGAAAACTAATACG+AGG 0.759823 1_1:+28384568 Msa0017130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTTGTTTTTATAATTT+TGG + chr1_1:28380975-28380994 Msa0017130:intron 10.0%
!! ATTCAAACATAAAAAAAAAA+AGG - chr1_1:28381553-28381572 None:intergenic 10.0%
!! GATAAAAAAAAAAAAAAAAC+AGG - chr1_1:28383799-28383818 None:intergenic 10.0%
!!! TCATTTTCTAATATTATTAT+TGG + chr1_1:28384091-28384110 Msa0017130:intron 10.0%
!!! AAAAAGTTCTTTAGAAAAAT+TGG + chr1_1:28381046-28381065 Msa0017130:intron 15.0%
!!! TTGTTTAGAATGATTTTATT+TGG + chr1_1:28381097-28381116 Msa0017130:intron 15.0%
!! AATACTAATTTCTTTCAATT+TGG + chr1_1:28382198-28382217 Msa0017130:intron 15.0%
!!! GTTTGTTAAAGATTTATATA+AGG + chr1_1:28382417-28382436 Msa0017130:intron 15.0%
!!! TTAGTATATATGGTAAATTT+TGG + chr1_1:28383118-28383137 Msa0017130:intron 15.0%
!!! TAATAAGAGAGTATAAATAA+AGG - chr1_1:28383830-28383849 None:intergenic 15.0%
!!! CATTTTATTTATGTATTAAG+CGG + chr1_1:28384256-28384275 Msa0017130:intron 15.0%
!!! AAAATTGAAATTTGCTTATA+GGG - chr1_1:28385041-28385060 None:intergenic 15.0%
!!! AAAAATTGAAATTTGCTTAT+AGG - chr1_1:28385042-28385061 None:intergenic 15.0%
!! ATCTTCCACATAAAAATAAA+TGG - chr1_1:28381022-28381041 None:intergenic 20.0%
!!! TTAGAATGATTTTATTTGGA+TGG + chr1_1:28381101-28381120 Msa0017130:intron 20.0%
!! AGATATAATCAAAGAGAAAA+TGG - chr1_1:28381749-28381768 None:intergenic 20.0%
!! CTCTTTGATTATATCTATAA+TGG + chr1_1:28381753-28381772 Msa0017130:intron 20.0%
!! ACTTATAACAATAAGCTATT+TGG + chr1_1:28381813-28381832 Msa0017130:intron 20.0%
!! GAAAGAAATTAGTATTCAAA+GGG - chr1_1:28382194-28382213 None:intergenic 20.0%
!! TGAAAGAAATTAGTATTCAA+AGG - chr1_1:28382195-28382214 None:intergenic 20.0%
!!! ATTCCAATGCAAATTTTATA+TGG - chr1_1:28382303-28382322 None:intergenic 20.0%
!! ATATAAAATTTGCATTGGAA+TGG + chr1_1:28382302-28382321 Msa0017130:intron 20.0%
!! TAAATCTTTAACAAACACTA+TGG - chr1_1:28382413-28382432 None:intergenic 20.0%
!!! TATATAAGGTATCATTTGTT+AGG + chr1_1:28382431-28382450 Msa0017130:intron 20.0%
!! AATATTACATGAATAGATGT+GGG - chr1_1:28382792-28382811 None:intergenic 20.0%
!! AAATATTACATGAATAGATG+TGG - chr1_1:28382793-28382812 None:intergenic 20.0%
!! GTATTATGAAAAGAGAAAAA+TGG + chr1_1:28383396-28383415 Msa0017130:intron 20.0%
!!! CAATGATTATTAGTTTGATA+TGG - chr1_1:28383649-28383668 None:intergenic 20.0%
!! AGTATAAATAAAGGAAAATG+AGG - chr1_1:28383821-28383840 None:intergenic 20.0%
!! TACTCTCTTATTAAAGTATA+AGG + chr1_1:28383837-28383856 Msa0017130:intron 20.0%
!! AATTTATGTTCATCAGATAA+TGG + chr1_1:28385120-28385139 Msa0017130:three_prime_UTR 20.0%
!!! TGATGCCATTTATTTTTATG+TGG + chr1_1:28381014-28381033 Msa0017130:intron 25.0%
!!! ATAAGCTGTGTTTTTTATGA+CGG + chr1_1:28381365-28381384 Msa0017130:intron 25.0%
! CAAATAAGTCAATCAAAACA+TGG + chr1_1:28381527-28381546 Msa0017130:intron 25.0%
! ATAATCAAAGAGAAAATGGA+GGG - chr1_1:28381745-28381764 None:intergenic 25.0%
! TATAATCAAAGAGAAAATGG+AGG - chr1_1:28381746-28381765 None:intergenic 25.0%
! TATAACAATAAGCTATTTGG+AGG + chr1_1:28381816-28381835 Msa0017130:intron 25.0%
! ACACCATATAAAATTTGCAT+TGG + chr1_1:28382297-28382316 Msa0017130:intron 25.0%
! AGTAGTAACTTTATTGTGAA+GGG - chr1_1:28382537-28382556 None:intergenic 25.0%
!! CAATGTTAGAGTTGATTATT+GGG - chr1_1:28382582-28382601 None:intergenic 25.0%
!! ACAATGTTAGAGTTGATTAT+TGG - chr1_1:28382583-28382602 None:intergenic 25.0%
! ATAGGGCTATTTGTAAAAAT+AGG - chr1_1:28382616-28382635 None:intergenic 25.0%
! ATAGAAGCTAGTTAATTAGT+TGG - chr1_1:28382650-28382669 None:intergenic 25.0%
! ATATTACATGAATAGATGTG+GGG - chr1_1:28382791-28382810 None:intergenic 25.0%
! TTTACTTACAGAATTCAGTT+TGG + chr1_1:28383050-28383069 Msa0017130:intron 25.0%
!! TAAATCTCAAAGCACTTATA+TGG - chr1_1:28383101-28383120 None:intergenic 25.0%
!!! GCTTTGAGATTTAGTATATA+TGG + chr1_1:28383108-28383127 Msa0017130:intron 25.0%
! ATGAAAAGAGAAAAATGGTT+TGG + chr1_1:28383401-28383420 Msa0017130:intron 25.0%
!! ACTTGTTTGTTAAAAGGTAT+CGG - chr1_1:28383458-28383477 None:intergenic 25.0%
!!! AATCAGTGATGATTTGTTAA+TGG + chr1_1:28383512-28383531 Msa0017130:intron 25.0%
! AGATTGTAATGAAAAATGGT+TGG - chr1_1:28383540-28383559 None:intergenic 25.0%
!!! ACCATTTTTCATTACAATCT+TGG + chr1_1:28383540-28383559 Msa0017130:intron 25.0%
! TCCAAGATTGTAATGAAAAA+TGG - chr1_1:28383544-28383563 None:intergenic 25.0%
! TTCATTACAATCTTGGAAAA+TGG + chr1_1:28383547-28383566 Msa0017130:intron 25.0%
! AAAATATGAACTACCAAAGA+AGG - chr1_1:28384019-28384038 None:intergenic 25.0%
! ATTATTATTGGTGTATGTGT+CGG + chr1_1:28384103-28384122 Msa0017130:intron 25.0%
!! AGGTTTTTAAATCTTATGGT+TGG + chr1_1:28384337-28384356 Msa0017130:intron 25.0%
!!! TATCGCTATTTTTCCATTTT+TGG + chr1_1:28384809-28384828 Msa0017130:CDS 25.0%
!!! ATCGCTATTTTTCCATTTTT+GGG + chr1_1:28384810-28384829 Msa0017130:CDS 25.0%
! ATATAATCACATGATGTTGT+AGG + chr1_1:28384970-28384989 Msa0017130:three_prime_UTR 25.0%
! TTTACATCTTCCTTGTATTA+AGG + chr1_1:28385061-28385080 Msa0017130:three_prime_UTR 25.0%
TTGTTGAAGTTGAAGTTTGA+GGG - chr1_1:28380743-28380762 None:intergenic 30.0%
ATTGTTGAAGTTGAAGTTTG+AGG - chr1_1:28380744-28380763 None:intergenic 30.0%
AATTTGTGAAGAAGAGAAGA+TGG + chr1_1:28380813-28380832 Msa0017130:CDS 30.0%
!! AGAAGGAAATAGTGGAATTT+TGG + chr1_1:28380868-28380887 Msa0017130:CDS 30.0%
! AAGATGCTTTAGATAGTTTG+TGG + chr1_1:28380891-28380910 Msa0017130:CDS 30.0%
ACTAAGCTGAAAATAGCTTA+TGG + chr1_1:28381283-28381302 Msa0017130:intron 30.0%
!!! TAAGCTGTGTTTTTTATGAC+GGG + chr1_1:28381366-28381385 Msa0017130:intron 30.0%
! ATATGCTGCCATTTAACAAA+CGG + chr1_1:28381504-28381523 Msa0017130:intron 30.0%
! CTTATTTGCCGTTTGTTAAA+TGG - chr1_1:28381515-28381534 None:intergenic 30.0%
! AAATGATAGTGTGCTAAAGT+GGG + chr1_1:28381617-28381636 Msa0017130:intron 30.0%
! CTATAATGGAAGAGAAAATG+AGG + chr1_1:28381767-28381786 Msa0017130:intron 30.0%
AAAATGAGGATAAACTGCAT+AGG + chr1_1:28381781-28381800 Msa0017130:intron 30.0%
GCTACAACGTTATAGTATAA+TGG + chr1_1:28381966-28381985 Msa0017130:intron 30.0%
TTGTACTAAATCACTTGTAG+CGG - chr1_1:28382015-28382034 None:intergenic 30.0%
TAGTTTACAAACCAGTGAAA+GGG - chr1_1:28382127-28382146 None:intergenic 30.0%
TCAATAAGACATGTAGGTTA+AGG - chr1_1:28382389-28382408 None:intergenic 30.0%
TATGGTTCAATAAGACATGT+AGG - chr1_1:28382395-28382414 None:intergenic 30.0%
TTCATTCGAATCCAATTCTT+GGG - chr1_1:28382459-28382478 None:intergenic 30.0%
TTTCATTCGAATCCAATTCT+TGG - chr1_1:28382460-28382479 None:intergenic 30.0%
TGAAAGAACACTTAAGAGAT+AGG + chr1_1:28382475-28382494 Msa0017130:intron 30.0%
CTTAAGAGATAGGAAAGAAT+AGG + chr1_1:28382485-28382504 Msa0017130:intron 30.0%
GTAGTAACTTTATTGTGAAG+GGG - chr1_1:28382536-28382555 None:intergenic 30.0%
GAGTAGTAACTTTATTGTGA+AGG - chr1_1:28382538-28382557 None:intergenic 30.0%
TTTGTCTATTAAGCTGTAGA+AGG - chr1_1:28382824-28382843 None:intergenic 30.0%
CTGTATAATTATGAGCAGAA+TGG + chr1_1:28382869-28382888 Msa0017130:intron 30.0%
TGAGCATCATCTTAGATTTA+TGG + chr1_1:28382981-28383000 Msa0017130:intron 30.0%
TCTGATACAAACTTCAGATT+AGG - chr1_1:28383022-28383041 None:intergenic 30.0%
GAAATGAAACCTTGAAGTTA+AGG + chr1_1:28383208-28383227 Msa0017130:intron 30.0%
! CTTGAAGTTAAGGTTTGTTT+GGG + chr1_1:28383218-28383237 Msa0017130:intron 30.0%
! TTAAGGTTTGTTTGGGAATT+AGG + chr1_1:28383225-28383244 Msa0017130:intron 30.0%
! TTTGGGAGAGAACTTTTAAA+GGG + chr1_1:28383317-28383336 Msa0017130:intron 30.0%
! GAAAAATGGTTTGGAGAATT+TGG + chr1_1:28383410-28383429 Msa0017130:intron 30.0%
!! TTTGTTAAAAGGTATCGGAA+GGG - chr1_1:28383453-28383472 None:intergenic 30.0%
! TACCTTTTAACAAACAAGTG+TGG + chr1_1:28383459-28383478 Msa0017130:intron 30.0%
! ACCTTTTAACAAACAAGTGT+GGG + chr1_1:28383460-28383479 Msa0017130:intron 30.0%
!!! CTCTGTTACTGTTATTTTAC+AGG + chr1_1:28383600-28383619 Msa0017130:intron 30.0%
ATGAAGGATTCAAGATTCAA+TGG - chr1_1:28383675-28383694 None:intergenic 30.0%
GTTTCTAAATCTCTCAAAGA+TGG + chr1_1:28383737-28383756 Msa0017130:intron 30.0%
! AAATCTCTCAAAGATGGTTT+TGG + chr1_1:28383743-28383762 Msa0017130:intron 30.0%
! CTTTACAACAAGCATTGTTA+AGG - chr1_1:28383898-28383917 None:intergenic 30.0%
GTGTTTAATCAGAAGAATTG+AGG + chr1_1:28383969-28383988 Msa0017130:intron 30.0%
TTCCAAATAACTTCCTTCTT+TGG + chr1_1:28384003-28384022 Msa0017130:intron 30.0%
TACCAAAGAAGGAAGTTATT+TGG - chr1_1:28384008-28384027 None:intergenic 30.0%
! TGTGCATTGAACATTTTTGT+TGG + chr1_1:28384284-28384303 Msa0017130:intron 30.0%
! GTGCAGGTTTTTAAATCTTA+TGG + chr1_1:28384333-28384352 Msa0017130:intron 30.0%
ACTGGCAATTGAGAAATTAT+GGG + chr1_1:28384455-28384474 Msa0017130:CDS 30.0%
!!! TTAGTTTTCTGGTTTTCTTC+CGG - chr1_1:28384564-28384583 None:intergenic 30.0%
AAAACCAGAAAACTAATACG+AGG + chr1_1:28384568-28384587 Msa0017130:CDS 30.0%
GCTATACATTGTATCTATTG+TGG - chr1_1:28384950-28384969 None:intergenic 30.0%
! AAATTTGCTTATAGGGAGTA+TGG - chr1_1:28385034-28385053 None:intergenic 30.0%
ATCTTGTTCAATCACATGTT+GGG - chr1_1:28385089-28385108 None:intergenic 30.0%
! ATGAGAGTGTATGTGATAGA+TGG + chr1_1:28380532-28380551 Msa0017130:exon 35.0%
!!! TTCATCAAGAGGTTTTGTTC+TGG - chr1_1:28380768-28380787 None:intergenic 35.0%
TCTTCTTCATCTTCATCAAG+AGG - chr1_1:28380779-28380798 None:intergenic 35.0%
TCTTGATGAAGATGAAGAAG+AGG + chr1_1:28380778-28380797 Msa0017130:CDS 35.0%
ACAGAAGAAACTGAAGAAGA+AGG + chr1_1:28380851-28380870 Msa0017130:CDS 35.0%
ACTGAAGAAGAAGGAAATAG+TGG + chr1_1:28380860-28380879 Msa0017130:CDS 35.0%
! AGATAGTTTGTGGATTCTCA+AGG + chr1_1:28380901-28380920 Msa0017130:CDS 35.0%
ATCCACTTGTGAGACTATTT+GGG - chr1_1:28381337-28381356 None:intergenic 35.0%
TATCCACTTGTGAGACTATT+TGG - chr1_1:28381338-28381357 None:intergenic 35.0%
! GCAAAGGCGTGTTTATATAA+CGG - chr1_1:28381403-28381422 None:intergenic 35.0%
AATCCTTCACGAATTGCTTA+TGG + chr1_1:28381448-28381467 Msa0017130:intron 35.0%
TTAGCACACTATCATTTCAG+AGG - chr1_1:28381614-28381633 None:intergenic 35.0%
! GAAATGATAGTGTGCTAAAG+TGG + chr1_1:28381616-28381635 Msa0017130:intron 35.0%
! TATTTGATAACACTACCCTG+TGG - chr1_1:28381906-28381925 None:intergenic 35.0%
AACTCAATAAACCTCACCTT+GGG - chr1_1:28382103-28382122 None:intergenic 35.0%
AGTTTACAAACCAGTGAAAG+GGG - chr1_1:28382126-28382145 None:intergenic 35.0%
CTAGTTTACAAACCAGTGAA+AGG - chr1_1:28382128-28382147 None:intergenic 35.0%
! GTTGGCTTACTAGAAAATGT+TGG - chr1_1:28382237-28382256 None:intergenic 35.0%
GTATGATGTACTTCAACAGT+TGG - chr1_1:28382255-28382274 None:intergenic 35.0%
CTGTTGAAGTACATCATACA+TGG + chr1_1:28382256-28382275 Msa0017130:intron 35.0%
AGTACATCATACATGGAAGT+TGG + chr1_1:28382263-28382282 Msa0017130:intron 35.0%
AAAATTTGCATTGGAATGGC+TGG + chr1_1:28382306-28382325 Msa0017130:intron 35.0%
TTTGTTAGGAACCCAAGAAT+TGG + chr1_1:28382445-28382464 Msa0017130:intron 35.0%
AGTTGGTTGAGGTTGTAATA+GGG - chr1_1:28382633-28382652 None:intergenic 35.0%
TAGTTGGTTGAGGTTGTAAT+AGG - chr1_1:28382634-28382653 None:intergenic 35.0%
GCTAGTTAATTAGTTGGTTG+AGG - chr1_1:28382644-28382663 None:intergenic 35.0%
AAACCTGAAACCAATGGAAT+GGG + chr1_1:28382733-28382752 Msa0017130:intron 35.0%
!! GAAGACAACTGATTTTCACT+CGG + chr1_1:28382906-28382925 Msa0017130:intron 35.0%
! AATCTAAGATGATGCTCACT+AGG - chr1_1:28382979-28382998 None:intergenic 35.0%
ACTTCCAGAACAGAATAAGT+TGG - chr1_1:28383144-28383163 None:intergenic 35.0%
GTTAATACATCCTGATCACT+TGG + chr1_1:28383162-28383181 Msa0017130:intron 35.0%
CCAAACAAACCTTAACTTCA+AGG - chr1_1:28383220-28383239 None:intergenic 35.0%
! CCTTGAAGTTAAGGTTTGTT+TGG + chr1_1:28383217-28383236 Msa0017130:intron 35.0%
GTTTGTTTGGGAATTAGGAA+AGG + chr1_1:28383230-28383249 Msa0017130:intron 35.0%
GGAATTAGGAAAGGAAGAAA+GGG + chr1_1:28383239-28383258 Msa0017130:intron 35.0%
!! GGTATTTTCTCACCTTGTTT+GGG + chr1_1:28383300-28383319 Msa0017130:intron 35.0%
TAAAAGTTCTCTCCCAAACA+AGG - chr1_1:28383315-28383334 None:intergenic 35.0%
! GTTTGGGAGAGAACTTTTAA+AGG + chr1_1:28383316-28383335 Msa0017130:intron 35.0%
!! TTGGGAGAGAACTTTTAAAG+GGG + chr1_1:28383318-28383337 Msa0017130:intron 35.0%
!! GTTTGTTAAAAGGTATCGGA+AGG - chr1_1:28383454-28383473 None:intergenic 35.0%
! ACCCACACTTGTTTGTTAAA+AGG - chr1_1:28383464-28383483 None:intergenic 35.0%
TCTCTCTACATACTCTATGA+AGG - chr1_1:28383691-28383710 None:intergenic 35.0%
!!! TCAAAGATGGTTTTGGCAAT+TGG + chr1_1:28383750-28383769 Msa0017130:intron 35.0%
!! AGAAGTACTGACACAAACAT+CGG - chr1_1:28384156-28384175 None:intergenic 35.0%
TGTTTGTGTCAGTACTTCTT+AGG + chr1_1:28384157-28384176 Msa0017130:intron 35.0%
ATAATTGCTGTGTTGCATTG+TGG + chr1_1:28384216-28384235 Msa0017130:intron 35.0%
! TGAACATTTTTGTTGGTGTG+AGG + chr1_1:28384291-28384310 Msa0017130:intron 35.0%
CACTGGCAATTGAGAAATTA+TGG + chr1_1:28384454-28384473 Msa0017130:CDS 35.0%
CTGGCAATTGAGAAATTATG+GGG + chr1_1:28384456-28384475 Msa0017130:CDS 35.0%
CAATTGAGAAATTATGGGGA+CGG + chr1_1:28384460-28384479 Msa0017130:CDS 35.0%
CAAAGGATGAATATGGAAAG+TGG + chr1_1:28384732-28384751 Msa0017130:CDS 35.0%
!! TTTTTCCATTTTTGGGCACA+TGG + chr1_1:28384817-28384836 Msa0017130:CDS 35.0%
CATCTTGTTCAATCACATGT+TGG - chr1_1:28385090-28385109 None:intergenic 35.0%
CAACATGTGATTGAACAAGA+TGG + chr1_1:28385088-28385107 Msa0017130:three_prime_UTR 35.0%
!! GACATGGGTTTTGTGGAAAA+GGG - chr1_1:28380653-28380672 None:intergenic 40.0%
!! AGACATGGGTTTTGTGGAAA+AGG - chr1_1:28380654-28380673 None:intergenic 40.0%
! AGAATGAGACATGGGTTTTG+TGG - chr1_1:28380660-28380679 None:intergenic 40.0%
CATCATTGGAATTCCAACGT+GGG - chr1_1:28380709-28380728 None:intergenic 40.0%
TCATCATTGGAATTCCAACG+TGG - chr1_1:28380710-28380729 None:intergenic 40.0%
TTGTGAAGAAGAGAAGATGG+TGG + chr1_1:28380816-28380835 Msa0017130:CDS 40.0%
AATGGCAGCATATAGCAGAA+TGG - chr1_1:28381497-28381516 None:intergenic 40.0%
TAGAGATGCTTGTTCGTGTT+TGG + chr1_1:28381651-28381670 Msa0017130:intron 40.0%
TTAGTTAGCATTTGTGCAGC+TGG - chr1_1:28382052-28382071 None:intergenic 40.0%
GAACTCAATAAACCTCACCT+TGG - chr1_1:28382104-28382123 None:intergenic 40.0%
TTATTGAGTTCCCCTTTCAC+TGG + chr1_1:28382113-28382132 Msa0017130:intron 40.0%
ACATGGAAGTTGGAACTGAA+TGG + chr1_1:28382273-28382292 Msa0017130:intron 40.0%
ACTTCCAAACCTGAAACCAA+TGG + chr1_1:28382727-28382746 Msa0017130:intron 40.0%
!! CATTCCATTGGTTTCAGGTT+TGG - chr1_1:28382734-28382753 None:intergenic 40.0%
CAAACCTGAAACCAATGGAA+TGG + chr1_1:28382732-28382751 Msa0017130:intron 40.0%
AACCTGAAACCAATGGAATG+GGG + chr1_1:28382734-28382753 Msa0017130:intron 40.0%
CAGAATGGTGCGCAAAAAAT+TGG + chr1_1:28382884-28382903 Msa0017130:intron 40.0%
! TGGCTTTTGCTTGATCTTTC+AGG - chr1_1:28382951-28382970 None:intergenic 40.0%
GTGACCGTTCTCAAATTTCA+AGG + chr1_1:28383072-28383091 Msa0017130:intron 40.0%
ACCGTTCTCAAATTTCAAGG+TGG + chr1_1:28383075-28383094 Msa0017130:intron 40.0%
GCCACCTTGAAATTTGAGAA+CGG - chr1_1:28383079-28383098 None:intergenic 40.0%
TTGGCCAACTTATTCTGTTC+TGG + chr1_1:28383137-28383156 Msa0017130:intron 40.0%
CAGTAGAAAACCAAGTGATC+AGG - chr1_1:28383175-28383194 None:intergenic 40.0%
GGGAATTAGGAAAGGAAGAA+AGG + chr1_1:28383238-28383257 Msa0017130:intron 40.0%
! GGGTATTTTCTCACCTTGTT+TGG + chr1_1:28383299-28383318 Msa0017130:intron 40.0%
!! TGGGAGAGAACTTTTAAAGG+GGG + chr1_1:28383319-28383338 Msa0017130:intron 40.0%
AGTAACAGAGCAGATTACAG+TGG - chr1_1:28383590-28383609 None:intergenic 40.0%
! TGAATTCATTTTCGCAGTGC+AGG + chr1_1:28384317-28384336 Msa0017130:intron 40.0%
AACCATGATGCAAGGATGAT+GGG - chr1_1:28384369-28384388 None:intergenic 40.0%
TAGAAAGCAACCATGATGCA+AGG - chr1_1:28384377-28384396 None:intergenic 40.0%
! ATGCCATGAGGAAAGCTTTT+GGG - chr1_1:28384404-28384423 None:intergenic 40.0%
! AATGCCATGAGGAAAGCTTT+TGG - chr1_1:28384405-28384424 None:intergenic 40.0%
TTCATCCTATACTTGCGCTT+TGG - chr1_1:28384498-28384517 None:intergenic 40.0%
! CTCGTGTGTCATTCACATTT+CGG - chr1_1:28384530-28384549 None:intergenic 40.0%
!!! CCTTCCTCGTATTAGTTTTC+TGG - chr1_1:28384575-28384594 None:intergenic 40.0%
CCAGAAAACTAATACGAGGA+AGG + chr1_1:28384572-28384591 Msa0017130:CDS 40.0%
GAAAACTAATACGAGGAAGG+CGG + chr1_1:28384575-28384594 Msa0017130:CDS 40.0%
AAAACTAATACGAGGAAGGC+GGG + chr1_1:28384576-28384595 Msa0017130:CDS 40.0%
TCGTGGGTAGTTGAAAACAA+CGG + chr1_1:28384606-28384625 Msa0017130:CDS 40.0%
AACAACGGTTCGATTGATAG+TGG + chr1_1:28384621-28384640 Msa0017130:CDS 40.0%
AGGGTCACAAAGGATGAATA+TGG + chr1_1:28384725-28384744 Msa0017130:CDS 40.0%
GGATGAATATGGAAAGTGGT+AGG + chr1_1:28384736-28384755 Msa0017130:CDS 40.0%
TTTGTCCATGTGCCCAAAAA+TGG - chr1_1:28384825-28384844 None:intergenic 40.0%
CTGTAAAAGTCTCCTCCATA+GGG + chr1_1:28384849-28384868 Msa0017130:exon 40.0%
ATCAAAGCTCAAGTTCCCTA+TGG - chr1_1:28384867-28384886 None:intergenic 40.0%
! GAACTTGAGCTTTGATGTGT+TGG + chr1_1:28384871-28384890 Msa0017130:three_prime_UTR 40.0%
TGTGTACCTGTCATTGTTGT+AGG + chr1_1:28385006-28385025 Msa0017130:three_prime_UTR 40.0%
ATGGATCCTACAACAATGAC+AGG - chr1_1:28385015-28385034 None:intergenic 40.0%
ATGTTGGGCACCTTAATACA+AGG - chr1_1:28385074-28385093 None:intergenic 40.0%
TGAGGAGAATAGAGAGGTTG+AGG - chr1_1:28380620-28380639 None:intergenic 45.0%
CATGGATGAGGAGAATAGAG+AGG - chr1_1:28380626-28380645 None:intergenic 45.0%
CTCTCTATTCTCCTCATCCA+TGG + chr1_1:28380624-28380643 Msa0017130:CDS 45.0%
GATACGCGAGAATGAGACAT+GGG - chr1_1:28380668-28380687 None:intergenic 45.0%
AGATACGCGAGAATGAGACA+TGG - chr1_1:28380669-28380688 None:intergenic 45.0%
ATTCCAACGTGGGAAGTTGT+TGG - chr1_1:28380699-28380718 None:intergenic 45.0%
!! GGGTCGAAAAGTGTCATCAT+TGG - chr1_1:28380723-28380742 None:intergenic 45.0%
CTCCCAAATAGTCTCACAAG+TGG + chr1_1:28381332-28381351 Msa0017130:intron 45.0%
!!! GCTGTGTTTTTTATGACGGG+AGG + chr1_1:28381369-28381388 Msa0017130:intron 45.0%
CCACCATAAGCAATTCGTGA+AGG - chr1_1:28381454-28381473 None:intergenic 45.0%
CCTTCACGAATTGCTTATGG+TGG + chr1_1:28381451-28381470 Msa0017130:intron 45.0%
!!! AGAATGGCATGGCGGATTTT+TGG - chr1_1:28381481-28381500 None:intergenic 45.0%
CATATAGCAGAATGGCATGG+CGG - chr1_1:28381489-28381508 None:intergenic 45.0%
CAGCATATAGCAGAATGGCA+TGG - chr1_1:28381492-28381511 None:intergenic 45.0%
! TGATAGTGTGCTAAAGTGGG+AGG + chr1_1:28381620-28381639 Msa0017130:intron 45.0%
ATAACACTACCCTGTGGTGT+TGG - chr1_1:28381935-28381954 None:intergenic 45.0%
TTGGGCAGCATTATCAGTAG+CGG - chr1_1:28382085-28382104 None:intergenic 45.0%
TTTGCATTGGAATGGCTGGT+TGG + chr1_1:28382310-28382329 Msa0017130:intron 45.0%
! TTGCATTGGAATGGCTGGTT+GGG + chr1_1:28382311-28382330 Msa0017130:intron 45.0%
TATTGTGAAGGGGAAACCCT+TGG - chr1_1:28382526-28382545 None:intergenic 45.0%
!! TTCCCCATTCCATTGGTTTC+AGG - chr1_1:28382739-28382758 None:intergenic 45.0%
ATGATGCTCACTAGGATGCA+TGG - chr1_1:28382971-28382990 None:intergenic 45.0%
! AGGAAGAAAGGGAAAAGCGT+AGG + chr1_1:28383250-28383269 Msa0017130:intron 45.0%
! GGAAGAAAGGGAAAAGCGTA+GGG + chr1_1:28383251-28383270 Msa0017130:intron 45.0%
! GAAGAAAGGGAAAAGCGTAG+GGG + chr1_1:28383252-28383271 Msa0017130:intron 45.0%
AGTGGAGAGGGAAATGGAAA+GGG + chr1_1:28383275-28383294 Msa0017130:intron 45.0%
!! GAGAGAACTTTTAAAGGGGG+TGG + chr1_1:28383322-28383341 Msa0017130:intron 45.0%
TATCGGAAGGGAGTCTTAGA+GGG - chr1_1:28383441-28383460 None:intergenic 45.0%
TATCGCTGTTGCGTGAATGT+CGG - chr1_1:28384049-28384068 None:intergenic 45.0%
CAACCATGATGCAAGGATGA+TGG - chr1_1:28384370-28384389 None:intergenic 45.0%
! GCATCATGGTTGCTTTCTAC+CGG + chr1_1:28384378-28384397 Msa0017130:CDS 45.0%
GCAAACCAAAGCGCAAGTAT+AGG + chr1_1:28384490-28384509 Msa0017130:CDS 45.0%
AGCGCAAGTATAGGATGAAG+AGG + chr1_1:28384499-28384518 Msa0017130:CDS 45.0%
AAACTAATACGAGGAAGGCG+GGG + chr1_1:28384577-28384596 Msa0017130:CDS 45.0%
!! CACCAAAACTTGGTGCATCT+CGG - chr1_1:28384650-28384669 None:intergenic 45.0%
!! ATGCACCAAGTTTTGGTGGA+TGG + chr1_1:28384652-28384671 Msa0017130:CDS 45.0%
!! TGCACCAAGTTTTGGTGGAT+GGG + chr1_1:28384653-28384672 Msa0017130:CDS 45.0%
TCATCCCATCCACCAAAACT+TGG - chr1_1:28384660-28384679 None:intergenic 45.0%
!! TTTTGGTGGATGGGATGACT+TGG + chr1_1:28384662-28384681 Msa0017130:CDS 45.0%
! GCTTGTGATCTCCTTGTTGT+TGG - chr1_1:28384699-28384718 None:intergenic 45.0%
CAACAAGGAGATCACAAGCA+AGG + chr1_1:28384700-28384719 Msa0017130:CDS 45.0%
AGGAGATCACAAGCAAGGAA+AGG + chr1_1:28384705-28384724 Msa0017130:CDS 45.0%
GGAGATCACAAGCAAGGAAA+GGG + chr1_1:28384706-28384725 Msa0017130:CDS 45.0%
AAGCAAGGAAAGGGTCACAA+AGG + chr1_1:28384715-28384734 Msa0017130:CDS 45.0%
! TGGAAAGTGGTAGGTTGAGT+AGG + chr1_1:28384745-28384764 Msa0017130:CDS 45.0%
ATAAGCAATCGAACCAGGAG+GGG - chr1_1:28384792-28384811 None:intergenic 45.0%
GATAAGCAATCGAACCAGGA+GGG - chr1_1:28384793-28384812 None:intergenic 45.0%
TAGCGATAAGCAATCGAACC+AGG - chr1_1:28384797-28384816 None:intergenic 45.0%
GCTGTAAAAGTCTCCTCCAT+AGG + chr1_1:28384848-28384867 Msa0017130:exon 45.0%
AAAGCTCAAGTTCCCTATGG+AGG - chr1_1:28384864-28384883 None:intergenic 45.0%
!! TATTAAAAAAAAACTAAAAA+TGG - chr1_1:28380931-28380950 None:intergenic 5.0%
CATCAACACCACTACTGCCA+AGG + chr1_1:28380563-28380582 Msa0017130:CDS 50.0%
AGGAAGGTGACCAAGGAATG+TGG - chr1_1:28380591-28380610 None:intergenic 50.0%
GGAGAATAGAGAGGTTGAGG+TGG - chr1_1:28380617-28380636 None:intergenic 50.0%
TTTGTGGAAAAGGGTCGCCA+TGG - chr1_1:28380644-28380663 None:intergenic 50.0%
TCGTGAAGGATTGTCCACCA+TGG - chr1_1:28381440-28381459 None:intergenic 50.0%
AAACAAGCCCAAACGCACAC+AGG + chr1_1:28381887-28381906 Msa0017130:intron 50.0%
AACAAGCCCAAACGCACACA+GGG + chr1_1:28381888-28381907 Msa0017130:intron 50.0%
ACACTACCCTGTGTGCGTTT+GGG - chr1_1:28381897-28381916 None:intergenic 50.0%
AACACTACCCTGTGTGCGTT+TGG - chr1_1:28381898-28381917 None:intergenic 50.0%
! GCTACTGATAATGCTGCCCA+AGG + chr1_1:28382084-28382103 Msa0017130:intron 50.0%
! TGATAATGCTGCCCAAGGTG+AGG + chr1_1:28382089-28382108 Msa0017130:intron 50.0%
! TGCATTGGAATGGCTGGTTG+GGG + chr1_1:28382312-28382331 Msa0017130:intron 50.0%
GCGAGAAATCTCTCCTCCAA+GGG + chr1_1:28382507-28382526 Msa0017130:intron 50.0%
CCAAGCATTCCCCATTCCAT+TGG - chr1_1:28382746-28382765 None:intergenic 50.0%
CCAATGGAATGGGGAATGCT+TGG + chr1_1:28382743-28382762 Msa0017130:intron 50.0%
GAGTGGAGAGGGAAATGGAA+AGG + chr1_1:28383274-28383293 Msa0017130:intron 50.0%
GAGAGGGAAATGGAAAGGGA+GGG + chr1_1:28383279-28383298 Msa0017130:intron 50.0%
GTATCGGAAGGGAGTCTTAG+AGG - chr1_1:28383442-28383461 None:intergenic 50.0%
! CGGTGTTAGTGTCAGTGTTG+TGG + chr1_1:28384123-28384142 Msa0017130:intron 50.0%
TGCCCATCATCCTTGCATCA+TGG + chr1_1:28384364-28384383 Msa0017130:CDS 50.0%
! CATGAGGAAAGCTTTTGGGC+CGG - chr1_1:28384400-28384419 None:intergenic 50.0%
GAGGGATTGCTAATGCCATG+AGG - chr1_1:28384416-28384435 None:intergenic 50.0%
!! CAAGTGCTGACTGACTGAGA+GGG - chr1_1:28384434-28384453 None:intergenic 50.0%
!! CTTGCGCTTTGGTTTGCTCT+CGG - chr1_1:28384487-28384506 None:intergenic 50.0%
!! CACACGAGTTGATGAAGAGC+CGG + chr1_1:28384542-28384561 Msa0017130:CDS 50.0%
! AGCCGAGATGCACCAAGTTT+TGG + chr1_1:28384645-28384664 Msa0017130:CDS 50.0%
!! CGAGATGCACCAAGTTTTGG+TGG + chr1_1:28384648-28384667 Msa0017130:CDS 50.0%
AAAAAGTGATACGCCCCTCC+TGG + chr1_1:28384776-28384795 Msa0017130:CDS 50.0%
CGATAAGCAATCGAACCAGG+AGG - chr1_1:28384794-28384813 None:intergenic 50.0%
ATGTGGTGCCTTGGCAGTAG+TGG - chr1_1:28380574-28380593 None:intergenic 55.0%
! TGCCAAGGCACCACATTCCT+TGG + chr1_1:28380578-28380597 Msa0017130:CDS 55.0%
GACCAAGGAATGTGGTGCCT+TGG - chr1_1:28380583-28380602 None:intergenic 55.0%
TAGAGAGGTTGAGGTGGTCG+AGG - chr1_1:28380611-28380630 None:intergenic 55.0%
GAAAAGGGTCGCCATGGATG+AGG - chr1_1:28380638-28380657 None:intergenic 55.0%
CCAACGTGGGAAGTTGTTGG+AGG - chr1_1:28380696-28380715 None:intergenic 55.0%
CCTCCAACAACTTCCCACGT+TGG + chr1_1:28380693-28380712 Msa0017130:CDS 55.0%
AATAGCAGCGCCAACACCAC+AGG + chr1_1:28381922-28381941 Msa0017130:intron 55.0%
ATAGCAGCGCCAACACCACA+GGG + chr1_1:28381923-28381942 Msa0017130:intron 55.0%
! ATTGGAATGGCTGGTTGGGG+AGG + chr1_1:28382315-28382334 Msa0017130:intron 55.0%
! AATGGCTGGTTGGGGAGGAA+TGG + chr1_1:28382320-28382339 Msa0017130:intron 55.0%
GGCGAGAAATCTCTCCTCCA+AGG + chr1_1:28382506-28382525 Msa0017130:intron 55.0%
TGTGAAGGGGAAACCCTTGG+AGG - chr1_1:28382523-28382542 None:intergenic 55.0%
!! GGGAATGCTTGGTGTGCTAC+AGG + chr1_1:28382754-28382773 Msa0017130:intron 55.0%
! AAGGGAAAAGCGTAGGGGAG+TGG + chr1_1:28383257-28383276 Msa0017130:intron 55.0%
! AAAAGCGTAGGGGAGTGGAG+AGG + chr1_1:28383262-28383281 Msa0017130:intron 55.0%
AAAGCGTAGGGGAGTGGAGA+GGG + chr1_1:28383263-28383282 Msa0017130:intron 55.0%
TAGGGGAGTGGAGAGGGAAA+TGG + chr1_1:28383269-28383288 Msa0017130:intron 55.0%
GGAGAGGGAAATGGAAAGGG+AGG + chr1_1:28383278-28383297 Msa0017130:intron 55.0%
CGGCCCAAAAGCTTTCCTCA+TGG + chr1_1:28384398-28384417 Msa0017130:CDS 55.0%
!! GCAAGTGCTGACTGACTGAG+AGG - chr1_1:28384435-28384454 None:intergenic 55.0%
CAGTCAGTCAGCACTTGCAC+TGG + chr1_1:28384437-28384456 Msa0017130:CDS 55.0%
GTGGTCGAGGAAGGTGACCA+AGG - chr1_1:28380598-28380617 None:intergenic 60.0%
GAGGTTGAGGTGGTCGAGGA+AGG - chr1_1:28380607-28380626 None:intergenic 60.0%
GGCAGCGTTGTAGGCTGCAA+AGG - chr1_1:28381419-28381438 None:intergenic 60.0%
TGCAGCCTACAACGCTGCCA+TGG + chr1_1:28381420-28381439 Msa0017130:intron 60.0%
AGCCTACAACGCTGCCATGG+TGG + chr1_1:28381423-28381442 Msa0017130:intron 60.0%
GTCCACCATGGCAGCGTTGT+AGG - chr1_1:28381428-28381447 None:intergenic 60.0%
! GGGATGACTTGGAGCGAGCT+CGG + chr1_1:28384673-28384692 Msa0017130:CDS 60.0%
AGCGAGCTCGGCCAACAACA+AGG + chr1_1:28384685-28384704 Msa0017130:CDS 60.0%
GAAGGCGGGGATGCAGTCGT+GGG + chr1_1:28384590-28384609 Msa0017130:CDS 65.0%
GGAAGGCGGGGATGCAGTCG+TGG + chr1_1:28384589-28384608 Msa0017130:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 28380527 28385158 28380527 ID=Msa0017130;Name=Msa0017130
chr1_1 mRNA 28380527 28385158 28380527 ID=Msa0017130-mRNA-1;Parent=Msa0017130;Name=Msa0017130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=24|1|1|1|1|1|2|304|295
chr1_1 exon 28380527 28380922 28380527 ID=Msa0017130-mRNA-1:exon:9474;Parent=Msa0017130-mRNA-1
chr1_1 exon 28384339 28385158 28384339 ID=Msa0017130-mRNA-1:exon:9475;Parent=Msa0017130-mRNA-1
chr1_1 five_prime_UTR 28380527 28380550 28380527 ID=Msa0017130-mRNA-1:five_prime_utr;Parent=Msa0017130-mRNA-1
chr1_1 CDS 28380551 28380922 28380551 ID=Msa0017130-mRNA-1:cds;Parent=Msa0017130-mRNA-1
chr1_1 CDS 28384339 28384854 28384339 ID=Msa0017130-mRNA-1:cds;Parent=Msa0017130-mRNA-1
chr1_1 three_prime_UTR 28384855 28385158 28384855 ID=Msa0017130-mRNA-1:three_prime_utr;Parent=Msa0017130-mRNA-1
Gene Sequence

>Msa0017130

ATGGAAGCTCATCATCAACACCACTACTGCCAAGGCACCACATTCCTTGGTCACCTTCCTCGACCACCTCAACCTCTCTATTCTCCTCATCCATGGCGACCCTTTTCCACAAAACCCATGTCTCATTCTCGCGTATCTTTCTCCTCCAACAACTTCCCACGTTGGAATTCCAATGATGACACTTTTCGACCCTCAAACTTCAACTTCAACAATGCCAGAACAAAACCTCTTGATGAAGATGAAGAAGAGGAATATGATGATGAATTTGTGAAGAAGAGAAGATGGTGGTCTGATGAGTATACAGAAGAAACTGAAGAAGAAGGAAATAGTGGAATTTTGGAAGATGCTTTAGATAGTTTGTGGATTCTCAAGGTTTTTAAATCTTATGGTTGGACGCTGCCCATCATCCTTGCATCATGGTTGCTTTCTACCGGCCCAAAAGCTTTCCTCATGGCATTAGCAATCCCTCTCAGTCAGTCAGCACTTGCACTGGCAATTGAGAAATTATGGGGACGGACCGAGAGCAAACCAAAGCGCAAGTATAGGATGAAGAGGAAACGCCGAAATGTGAATGACACACGAGTTGATGAAGAGCCGGAAGAAAACCAGAAAACTAATACGAGGAAGGCGGGGATGCAGTCGTGGGTAGTTGAAAACAACGGTTCGATTGATAGTGGCAGCCGAGATGCACCAAGTTTTGGTGGATGGGATGACTTGGAGCGAGCTCGGCCAACAACAAGGAGATCACAAGCAAGGAAAGGGTCACAAAGGATGAATATGGAAAGTGGTAGGTTGAGTAGGAGAGAAAGAAAAAGTGATACGCCCCTCCTGGTTCGATTGCTTATCGCTATTTTTCCATTTTTGGGCACATGGACAAAGATGCTGTAA

Protein sequence

>Msa0017130

MEAHHQHHYCQGTTFLGHLPRPPQPLYSPHPWRPFSTKPMSHSRVSFSSNNFPRWNSNDDTFRPSNFNFNNARTKPLDEDEEEEYDDEFVKKRRWWSDEYTEETEEEGNSGILEDALDSLWILKVFKSYGWTLPIILASWLLSTGPKAFLMALAIPLSQSALALAIEKLWGRTESKPKRKYRMKRKRRNVNDTRVDEEPEENQKTNTRKAGMQSWVVENNGSIDSGSRDAPSFGGWDDLERARPTTRRSQARKGSQRMNMESGRLSRRERKSDTPLLVRLLIAIFPFLGTWTKML*