AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0272570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0272570 MtrunA17_Chr2g0282181 91.830 306 6 4 1 306 1 287 0.0 566
Msa0272570 MtrunA17_Chr4g0027101 37.407 270 141 5 21 284 3 250 8.21e-53 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0272570 AT5G22620.4 43.981 216 110 2 73 287 31 236 3.92e-58 193
Msa0272570 AT5G22620.3 43.981 216 110 2 73 287 31 236 3.92e-58 193
Msa0272570 AT5G22620.6 43.981 216 110 2 73 287 31 236 4.31e-58 194
Msa0272570 AT5G22620.1 43.981 216 110 2 73 287 31 236 5.51e-58 194
Msa0272570 AT5G22620.5 43.981 216 110 2 73 287 31 236 5.51e-58 194
Msa0272570 AT5G22620.2 43.981 216 110 2 73 287 31 236 5.51e-58 194

Find 73 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAGTTTGCTTCTAATT+TGG 0.164289 2_3:+4101300 Msa0272570:intron
GAGATGAAATGAAAATAATT+TGG 0.269199 2_3:+4099613 Msa0272570:five_prime_UTR
TCTACCATTCATGACAAAAT+TGG 0.307684 2_3:-4101383 None:intergenic
AGCAAACTGCTGAAATTATA+TGG 0.326556 2_3:+4100549 Msa0272570:intron
ACTTGCACTGCTTTAGGCCT+TGG 0.331082 2_3:+4101597 Msa0272570:CDS
TTCAGCAACCAAGAGATTTC+AGG 0.337173 2_3:-4102293 None:intergenic
CTAACCTTGGCACGAGATAT+TGG 0.340655 2_3:-4100444 None:intergenic
TGATGAAGTGATTAACTCAT+TGG 0.341759 2_3:-4100099 None:intergenic
ACTAATAATGCTTACCTCTC+GGG 0.379397 2_3:-4101621 None:intergenic
GCATTAACTTGCACTGCTTT+AGG 0.388052 2_3:+4101591 Msa0272570:CDS
AAGCAAGCACGGTGTTAGTA+TGG 0.388631 2_3:+4099665 Msa0272570:exon
GGATGCTAAGCAAATATATA+AGG 0.396264 2_3:+4101330 Msa0272570:CDS
GAATGCTGAAAGTAGAATTC+AGG 0.401668 2_3:+4100160 Msa0272570:CDS
ATAAGGAGGAATACAGAATC+TGG 0.408630 2_3:+4101347 Msa0272570:CDS
TGCTTCTAATTTGGAGGCAG+TGG 0.409080 2_3:+4101309 Msa0272570:CDS
TTCGAGCATTGCTTCTCCTC+TGG 0.441980 2_3:-4102224 None:intergenic
GGATAGCTGCAAGAGATTGT+TGG 0.443903 2_3:+4101425 Msa0272570:CDS
ATATCTCTCTATCACCTTGA+AGG 0.451579 2_3:+4100617 Msa0272570:CDS
AAGCACGGTGTTAGTATGGC+AGG 0.454438 2_3:+4099669 Msa0272570:exon
TGCTTCTTCACCTTCTCTTG+TGG 0.457782 2_3:-4099647 None:intergenic
TCCCACCGTTGTTGATATCA+AGG 0.457935 2_3:-4102180 None:intergenic
GATATCCTGTACAAGATCTC+TGG 0.459702 2_3:+4101404 Msa0272570:CDS
AGACTCAGTACACTAATCAT+TGG 0.470577 2_3:-4102447 None:intergenic
TTGTCAGTACTAACTGAGGC+TGG 0.472288 2_3:+4100354 Msa0272570:CDS
GAGAAGAAGCGAAGGAGGAG+CGG 0.474449 2_3:-4099755 None:intergenic
CAACACTAGTGAGTGCTTGA+TGG 0.481250 2_3:+4102362 Msa0272570:three_prime_UTR
TCAGTTTGCTTCTAATTTGG+AGG 0.487074 2_3:+4101303 Msa0272570:intron
TTGAGTTAACCTATGGCAGC+AGG 0.491914 2_3:-4099837 None:intergenic
AGAAGAAGCGAAGGAGGAGC+GGG 0.498095 2_3:-4099754 None:intergenic
TAAGGCATGGTCTTAGCACT+TGG 0.512686 2_3:+4100138 Msa0272570:CDS
TGACTCACAAATCAATATTG+AGG 0.513537 2_3:+4101568 Msa0272570:CDS
CAGTGAATGCGGCGAGTGAG+AGG 0.516000 2_3:-4099789 None:intergenic
GACTCACAAATCAATATTGA+GGG 0.516265 2_3:+4101569 Msa0272570:CDS
ACTTCATACCCTGCTGCCAT+AGG 0.523920 2_3:+4099828 Msa0272570:CDS
CCATTCATGACAAAATTGGC+TGG 0.527605 2_3:-4101379 None:intergenic
TGTCAGTACTAACTGAGGCT+GGG 0.534843 2_3:+4100355 Msa0272570:CDS
ATATCCTGCCTGAAATCTCT+TGG 0.545845 2_3:+4102285 Msa0272570:exon
TTGGTTGCTGAATGCAAGGA+AGG 0.547319 2_3:+4102304 Msa0272570:three_prime_UTR
AGTGAATCAGTGTAAACCAA+TGG 0.551565 2_3:-4100587 None:intergenic
ATGCTTACCTCTCGGGGCCA+AGG 0.558444 2_3:-4101614 None:intergenic
GAAAGTAGAACCACAAGAGA+AGG 0.559878 2_3:+4099637 Msa0272570:five_prime_UTR
GTCAGTACTAACTGAGGCTG+GGG 0.566390 2_3:+4100356 Msa0272570:CDS
TCTCTTGGTTGCTGAATGCA+AGG 0.566644 2_3:+4102300 Msa0272570:three_prime_UTR
AGTACTAACTGAGGCTGGGG+TGG 0.571281 2_3:+4100359 Msa0272570:CDS
AGCACGGTGTTAGTATGGCA+GGG 0.576311 2_3:+4099670 Msa0272570:exon
TGCGGCGAGTGAGAGGAAGA+TGG 0.577745 2_3:-4099782 None:intergenic
ATGGAGCTGAGAAGAAGCGA+AGG 0.586294 2_3:-4099763 None:intergenic
AGAGAGATGCAAGAAAGCAT+TGG 0.588842 2_3:+4100389 Msa0272570:CDS
GAGCTGAGAAGAAGCGAAGG+AGG 0.593039 2_3:-4099760 None:intergenic
GCTATCCAGAGATCTTGTAC+AGG 0.594243 2_3:-4101409 None:intergenic
ACTGCTGAAATTATATGGCA+AGG 0.595942 2_3:+4100554 Msa0272570:CDS
AGAAGGTGAAGAAGCAAGCA+CGG 0.596424 2_3:+4099654 Msa0272570:five_prime_UTR
GCACGGTGTTAGTATGGCAG+GGG 0.601938 2_3:+4099671 Msa0272570:exon
CCCTTGATATCAACAACGGT+GGG 0.602416 2_3:+4102179 Msa0272570:CDS
CTAATAATGCTTACCTCTCG+GGG 0.611994 2_3:-4101620 None:intergenic
GGCAACTCATACAGAAGCTG+AGG 0.612162 2_3:+4102383 Msa0272570:three_prime_UTR
CAGTCCAATATCTCGTGCCA+AGG 0.616021 2_3:+4100440 Msa0272570:CDS
ATATTGGACTGGCAAGACAT+TGG 0.617224 2_3:-4100428 None:intergenic
CGTTCCCTTGATATCAACAA+CGG 0.619427 2_3:+4102175 Msa0272570:CDS
TGCTAAGCAAATATATAAGG+AGG 0.624637 2_3:+4101333 Msa0272570:CDS
CCCACCGTTGTTGATATCAA+GGG 0.631670 2_3:-4102179 None:intergenic
TCCCTTGATATCAACAACGG+TGG 0.632999 2_3:+4102178 Msa0272570:CDS
GAAATAGTCAGACATGGTGA+TGG 0.635078 2_3:-4099732 None:intergenic
GCAACCAAGAGATTTCAGGC+AGG 0.642711 2_3:-4102289 None:intergenic
CTTTAGGCCTTGGCCCCGAG+AGG 0.643406 2_3:+4101607 Msa0272570:CDS
TGAGTTAACCTATGGCAGCA+GGG 0.655476 2_3:-4099836 None:intergenic
CTTGGCACGAGATATTGGAC+TGG 0.659086 2_3:-4100439 None:intergenic
TAGAAGTTGAGCAGTGAATG+CGG 0.662780 2_3:-4099800 None:intergenic
AGCTGCAAGAGATTGTTGGA+AGG 0.663605 2_3:+4101429 Msa0272570:CDS
GAGCGGGAAATAGTCAGACA+TGG 0.675401 2_3:-4099738 None:intergenic
AGATTTGTCAGTACTAACTG+AGG 0.717407 2_3:+4100350 Msa0272570:CDS
GTATTCAACTTCAACACCAG+AGG 0.718413 2_3:+4102208 Msa0272570:CDS
TGGTTGTGAGCACAACAAAG+TGG 0.749709 2_3:-4099712 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAGAATAAACATGA+AGG - chr2_3:4099898-4099917 None:intergenic 15.0%
!!! ACTATTATTTTATAGTTAAC+TGG + chr2_3:4100735-4100754 Msa0272570:intron 15.0%
!!! GATAGATTTTATATAGTTTA+AGG - chr2_3:4100858-4100877 None:intergenic 15.0%
!! ACTATATTTATATAGTTTAG+AGG + chr2_3:4100976-4100995 Msa0272570:intron 15.0%
!! GAGATGAAATGAAAATAATT+TGG + chr2_3:4099613-4099632 Msa0272570:five_prime_UTR 20.0%
!! TTCTTTAAATTGAATAAGTG+AGG + chr2_3:4099907-4099926 Msa0272570:intron 20.0%
!! ACAGAAAAATCAATACTATT+TGG - chr2_3:4100035-4100054 None:intergenic 20.0%
!! ATCAATTTAATGACAATGAA+TGG - chr2_3:4100309-4100328 None:intergenic 20.0%
!! TAAATTGATCATATGTGTTT+AGG + chr2_3:4100320-4100339 Msa0272570:intron 20.0%
!! AAATTGATCATATGTGTTTA+GGG + chr2_3:4100321-4100340 Msa0272570:intron 20.0%
!! TGATAGTCAATTTATTTAAC+TGG + chr2_3:4100509-4100528 Msa0272570:intron 20.0%
!!! TCAATTTATTTAACTGGTTT+TGG + chr2_3:4100515-4100534 Msa0272570:intron 20.0%
!! ATATAGTTTAAGGACTAAAT+TGG - chr2_3:4100848-4100867 None:intergenic 20.0%
!! ACAGATTTGTATATACTTTA+AGG - chr2_3:4100889-4100908 None:intergenic 20.0%
!! TTTACATTTCATATACCATA+AGG + chr2_3:4100946-4100965 Msa0272570:intron 20.0%
!! AATATAGTAAATAGTCCTTA+TGG - chr2_3:4100964-4100983 None:intergenic 20.0%
!!! GACTAAATTGATGATTTATT+TGG + chr2_3:4101028-4101047 Msa0272570:intron 20.0%
!! CTATAGTTTAATCATAAAGA+AGG - chr2_3:4101112-4101131 None:intergenic 20.0%
!! CTTCTTTATGATTAAACTAT+AGG + chr2_3:4101110-4101129 Msa0272570:intron 20.0%
!!! TATTTTTACAATAGTATTCC+AGG + chr2_3:4101706-4101725 Msa0272570:intron 20.0%
!! TAGAACATTGAAGTTATAAA+TGG - chr2_3:4101775-4101794 None:intergenic 20.0%
!! AAAACCAATGTTTAAAAAAC+TGG - chr2_3:4102010-4102029 None:intergenic 20.0%
! TTTAAATTGAATAAGTGAGG+AGG + chr2_3:4099910-4099929 Msa0272570:intron 25.0%
! GACTATTTGTAAAGAAATAC+TGG + chr2_3:4099932-4099951 Msa0272570:intron 25.0%
!!! AGTATTGATTTTTCTGTAAC+TGG + chr2_3:4100038-4100057 Msa0272570:CDS 25.0%
!!! TTTTGTTTTGATGTTTCACA+TGG + chr2_3:4100265-4100284 Msa0272570:intron 25.0%
! TAGTTTAGGGACTAAATTTA+TGG - chr2_3:4100814-4100833 None:intergenic 25.0%
!! AAATCAGTTTGCTTCTAATT+TGG + chr2_3:4101300-4101319 Msa0272570:intron 25.0%
! CATTGAAGTTATAAATGGTA+CGG - chr2_3:4101770-4101789 None:intergenic 25.0%
! CTGGAATCTTTATCAAAAAA+TGG - chr2_3:4101799-4101818 None:intergenic 25.0%
!! TTTTTGATAAAGATTCCAGT+TGG + chr2_3:4101800-4101819 Msa0272570:intron 25.0%
! TTTAAGCAATGTTTCAAAAC+TGG + chr2_3:4101869-4101888 Msa0272570:intron 25.0%
! CCATTCTATGATAAAAACAA+TGG - chr2_3:4102340-4102359 None:intergenic 25.0%
!!! CCATTGTTTTTATCATAGAA+TGG + chr2_3:4102337-4102356 Msa0272570:three_prime_UTR 25.0%
!!! AAACTCTAAGATTTTGTGTA+GGG + chr2_3:4102524-4102543 Msa0272570:three_prime_UTR 25.0%
AGTTGAATTGAGTTAACCTA+TGG - chr2_3:4099847-4099866 None:intergenic 30.0%
!! ATTGATTTTTCTGTAACTGG+TGG + chr2_3:4100041-4100060 Msa0272570:CDS 30.0%
TGATGAAGTGATTAACTCAT+TGG - chr2_3:4100102-4100121 None:intergenic 30.0%
! CAAAGAAAGTCACTCTTTTA+AGG + chr2_3:4100120-4100139 Msa0272570:CDS 30.0%
AGCAAACTGCTGAAATTATA+TGG + chr2_3:4100549-4100568 Msa0272570:intron 30.0%
! TCTGCTCAACTTTAAAAACA+AGG + chr2_3:4100662-4100681 Msa0272570:intron 30.0%
AGTTTAAGGACTAAATTGGT+GGG - chr2_3:4100844-4100863 None:intergenic 30.0%
TAGTTTAAGGACTAAATTGG+TGG - chr2_3:4100845-4100864 None:intergenic 30.0%
GTTTAATCATAAAGAAGGAC+AGG - chr2_3:4101107-4101126 None:intergenic 30.0%
ACTTTGCTCTGACTTTAAAT+AGG + chr2_3:4101184-4101203 Msa0272570:intron 30.0%
CTTTGCTCTGACTTTAAATA+GGG + chr2_3:4101185-4101204 Msa0272570:intron 30.0%
GGATGCTAAGCAAATATATA+AGG + chr2_3:4101330-4101349 Msa0272570:CDS 30.0%
TGCTAAGCAAATATATAAGG+AGG + chr2_3:4101333-4101352 Msa0272570:CDS 30.0%
TCTACCATTCATGACAAAAT+TGG - chr2_3:4101386-4101405 None:intergenic 30.0%
CAATGGCAAAAAAATCTTAC+AGG - chr2_3:4101469-4101488 None:intergenic 30.0%
TGACTCACAAATCAATATTG+AGG + chr2_3:4101568-4101587 Msa0272570:CDS 30.0%
GACTCACAAATCAATATTGA+GGG + chr2_3:4101569-4101588 Msa0272570:CDS 30.0%
AACATGAAATTTCTTCTTCC+TGG - chr2_3:4101727-4101746 None:intergenic 30.0%
ACCAATTGAATTAGCTAGTT+CGG + chr2_3:4101983-4102002 Msa0272570:intron 30.0%
! GATAGAGCATCAAATTCAAA+TGG - chr2_3:4102106-4102125 None:intergenic 30.0%
!!! CAAACTCTAAGATTTTGTGT+AGG + chr2_3:4102523-4102542 Msa0272570:three_prime_UTR 30.0%
ACATTTACTCCAATCCAACA+TGG + chr2_3:4099969-4099988 Msa0272570:intron 35.0%
CATTTACTCCAATCCAACAT+GGG + chr2_3:4099970-4099989 Msa0272570:intron 35.0%
!!! AAAGTCACTCTTTTAAGGCA+TGG + chr2_3:4100125-4100144 Msa0272570:CDS 35.0%
GAATGCTGAAAGTAGAATTC+AGG + chr2_3:4100160-4100179 Msa0272570:CDS 35.0%
CAAAACAAAAACTTCAGTCC+TGG - chr2_3:4100255-4100274 None:intergenic 35.0%
AGATTTGTCAGTACTAACTG+AGG + chr2_3:4100350-4100369 Msa0272570:CDS 35.0%
ACTGCTGAAATTATATGGCA+AGG + chr2_3:4100554-4100573 Msa0272570:CDS 35.0%
AGTGAATCAGTGTAAACCAA+TGG - chr2_3:4100590-4100609 None:intergenic 35.0%
ATATCTCTCTATCACCTTGA+AGG + chr2_3:4100617-4100636 Msa0272570:CDS 35.0%
CACCTTGAAGGATTGAAAAA+TGG + chr2_3:4100629-4100648 Msa0272570:CDS 35.0%
!! CACCATTTTTCAATCCTTCA+AGG - chr2_3:4100634-4100653 None:intergenic 35.0%
!!! TTTTAAAGTTGAGCAGAGAC+AGG - chr2_3:4100659-4100678 None:intergenic 35.0%
! TAACTGGCATACTTGTTGAT+AGG + chr2_3:4100751-4100770 Msa0272570:intron 35.0%
TCTCTAACATCCTAATAGCA+GGG + chr2_3:4100917-4100936 Msa0272570:intron 35.0%
TAAATTCAGTCCCTGCTATT+AGG - chr2_3:4100930-4100949 None:intergenic 35.0%
TGAAGAGAGAAGGATAGTTT+AGG + chr2_3:4101005-4101024 Msa0272570:intron 35.0%
GAAGAGAGAAGGATAGTTTA+GGG + chr2_3:4101006-4101025 Msa0272570:intron 35.0%
!! AGTCAGAGCAAAGTTTTGTA+TGG - chr2_3:4101178-4101197 None:intergenic 35.0%
GATTAATCGATCCTTGCATA+CGG + chr2_3:4101242-4101261 Msa0272570:intron 35.0%
AATTGAAAACTCCGTATGCA+AGG - chr2_3:4101256-4101275 None:intergenic 35.0%
! TCAGTTTGCTTCTAATTTGG+AGG + chr2_3:4101303-4101322 Msa0272570:intron 35.0%
ATAAGGAGGAATACAGAATC+TGG + chr2_3:4101347-4101366 Msa0272570:CDS 35.0%
AAGATTCATCTTACTCTGCA+GGG + chr2_3:4101528-4101547 Msa0272570:intron 35.0%
ACTAATAATGCTTACCTCTC+GGG - chr2_3:4101624-4101643 None:intergenic 35.0%
GACTAATAATGCTTACCTCT+CGG - chr2_3:4101625-4101644 None:intergenic 35.0%
CAACATTTATGACAACCAAC+TGG - chr2_3:4101818-4101837 None:intergenic 35.0%
TGTCAAATGATACCATGATC+AGG + chr2_3:4101840-4101859 Msa0272570:intron 35.0%
CTTAAAACAACACCTGATCA+TGG - chr2_3:4101855-4101874 None:intergenic 35.0%
GCAATGTTTCAAAACTGGTT+CGG + chr2_3:4101874-4101893 Msa0272570:intron 35.0%
!! TTTCAAAACTGGTTCGGAAA+TGG + chr2_3:4101880-4101899 Msa0272570:intron 35.0%
AAATGGAATTGGTGAGACTT+TGG + chr2_3:4101897-4101916 Msa0272570:intron 35.0%
ACCGAACTAGCTAATTCAAT+TGG - chr2_3:4101987-4102006 None:intergenic 35.0%
!!! CGGTCCAGTTTTTTAAACAT+TGG + chr2_3:4102003-4102022 Msa0272570:intron 35.0%
AATGTCAGCTGCTAGAATAT+TGG - chr2_3:4102128-4102147 None:intergenic 35.0%
AGACATTGATCACAATGTTC+AGG + chr2_3:4102149-4102168 Msa0272570:intron 35.0%
AGACTCAGTACACTAATCAT+TGG - chr2_3:4102450-4102469 None:intergenic 35.0%
GAAAGTAGAACCACAAGAGA+AGG + chr2_3:4099637-4099656 Msa0272570:five_prime_UTR 40.0%
GAAATAGTCAGACATGGTGA+TGG - chr2_3:4099735-4099754 None:intergenic 40.0%
TAGAAGTTGAGCAGTGAATG+CGG - chr2_3:4099803-4099822 None:intergenic 40.0%
AGCTAGCTGATGACATATAG+CGG - chr2_3:4100213-4100232 None:intergenic 40.0%
ATGACAATGAATGGCAGATG+TGG - chr2_3:4100300-4100319 None:intergenic 40.0%
! AGAGAGATGCAAGAAAGCAT+TGG + chr2_3:4100389-4100408 Msa0272570:CDS 40.0%
!! ATATTGGACTGGCAAGACAT+TGG - chr2_3:4100431-4100450 None:intergenic 40.0%
GCAAGGAAGAGAAAAACCAT+TGG + chr2_3:4100571-4100590 Msa0272570:CDS 40.0%
GTCTCTAACATCCTAATAGC+AGG + chr2_3:4100916-4100935 Msa0272570:intron 40.0%
CCATTCATGACAAAATTGGC+TGG - chr2_3:4101382-4101401 None:intergenic 40.0%
! CCAGCCAATTTTGTCATGAA+TGG + chr2_3:4101379-4101398 Msa0272570:CDS 40.0%
GATATCCTGTACAAGATCTC+TGG + chr2_3:4101404-4101423 Msa0272570:CDS 40.0%
CTTGCAACACTGTGTATCAA+TGG - chr2_3:4101486-4101505 None:intergenic 40.0%
CAAGATTCATCTTACTCTGC+AGG + chr2_3:4101527-4101546 Msa0272570:intron 40.0%
!! GCATTAACTTGCACTGCTTT+AGG + chr2_3:4101591-4101610 Msa0272570:CDS 40.0%
CTAATAATGCTTACCTCTCG+GGG - chr2_3:4101623-4101642 None:intergenic 40.0%
!! AACTGGTTCGGAAATGGAAT+TGG + chr2_3:4101886-4101905 Msa0272570:intron 40.0%
GATCTAGCCAACCAATGAAA+TGG + chr2_3:4101945-4101964 Msa0272570:intron 40.0%
CAATTGGTTGAATCGAGAAC+CGG - chr2_3:4101971-4101990 None:intergenic 40.0%
CGTTCCCTTGATATCAACAA+CGG + chr2_3:4102175-4102194 Msa0272570:CDS 40.0%
GTATTCAACTTCAACACCAG+AGG + chr2_3:4102208-4102227 Msa0272570:CDS 40.0%
ATATCCTGCCTGAAATCTCT+TGG + chr2_3:4102285-4102304 Msa0272570:exon 40.0%
TTCAGCAACCAAGAGATTTC+AGG - chr2_3:4102296-4102315 None:intergenic 40.0%
TGCTTCTTCACCTTCTCTTG+TGG - chr2_3:4099650-4099669 None:intergenic 45.0%
AGAAGGTGAAGAAGCAAGCA+CGG + chr2_3:4099654-4099673 Msa0272570:five_prime_UTR 45.0%
! AAGCAAGCACGGTGTTAGTA+TGG + chr2_3:4099665-4099684 Msa0272570:exon 45.0%
TGGTTGTGAGCACAACAAAG+TGG - chr2_3:4099715-4099734 None:intergenic 45.0%
TGAGTTAACCTATGGCAGCA+GGG - chr2_3:4099839-4099858 None:intergenic 45.0%
TTGAGTTAACCTATGGCAGC+AGG - chr2_3:4099840-4099859 None:intergenic 45.0%
AACTTCAGCCCATGTTGGAT+TGG - chr2_3:4099981-4100000 None:intergenic 45.0%
! AATCCAACATGGGCTGAAGT+TGG + chr2_3:4099980-4099999 Msa0272570:intron 45.0%
AAACCAACTTCAGCCCATGT+TGG - chr2_3:4099986-4100005 None:intergenic 45.0%
!!! ATGGGCTGAAGTTGGTTTTG+TGG + chr2_3:4099988-4100007 Msa0272570:intron 45.0%
! TAAGGCATGGTCTTAGCACT+TGG + chr2_3:4100138-4100157 Msa0272570:CDS 45.0%
AACTTCAGTCCTGGAAGCAA+GGG - chr2_3:4100246-4100265 None:intergenic 45.0%
AAACTTCAGTCCTGGAAGCA+AGG - chr2_3:4100247-4100266 None:intergenic 45.0%
TTGTCAGTACTAACTGAGGC+TGG + chr2_3:4100354-4100373 Msa0272570:CDS 45.0%
TGTCAGTACTAACTGAGGCT+GGG + chr2_3:4100355-4100374 Msa0272570:CDS 45.0%
CTAACCTTGGCACGAGATAT+TGG - chr2_3:4100447-4100466 None:intergenic 45.0%
CAATATCTCGTGCCAAGGTT+AGG + chr2_3:4100445-4100464 Msa0272570:intron 45.0%
! GGTGGGAGTGTGATAGTTTA+GGG - chr2_3:4100827-4100846 None:intergenic 45.0%
! TGGTGGGAGTGTGATAGTTT+AGG - chr2_3:4100828-4100847 None:intergenic 45.0%
! GAGGCTAAGTTGAAGAGAGA+AGG + chr2_3:4100995-4101014 Msa0272570:intron 45.0%
TAGTCCACCGAAATTTGCAC+CGG - chr2_3:4101153-4101172 None:intergenic 45.0%
CAAGGATCGATTAATCCGAG+GGG - chr2_3:4101238-4101257 None:intergenic 45.0%
GCAAGGATCGATTAATCCGA+GGG - chr2_3:4101239-4101258 None:intergenic 45.0%
TGCAAGGATCGATTAATCCG+AGG - chr2_3:4101240-4101259 None:intergenic 45.0%
TGCTTCTAATTTGGAGGCAG+TGG + chr2_3:4101309-4101328 Msa0272570:CDS 45.0%
GCTATCCAGAGATCTTGTAC+AGG - chr2_3:4101412-4101431 None:intergenic 45.0%
GGATAGCTGCAAGAGATTGT+TGG + chr2_3:4101425-4101444 Msa0272570:CDS 45.0%
AGCTGCAAGAGATTGTTGGA+AGG + chr2_3:4101429-4101448 Msa0272570:CDS 45.0%
CAGCAAGACTGCAATGTAAC+CGG + chr2_3:4101922-4101941 Msa0272570:intron 45.0%
AGCAAGACTGCAATGTAACC+GGG + chr2_3:4101923-4101942 Msa0272570:intron 45.0%
! TTCATTGGTTGGCTAGATCC+CGG - chr2_3:4101944-4101963 None:intergenic 45.0%
TAGCCAACCAATGAAATGGC+CGG + chr2_3:4101949-4101968 Msa0272570:intron 45.0%
GTTCATGCTACACATGCAAG+AGG - chr2_3:4102075-4102094 None:intergenic 45.0%
TCCCTTGATATCAACAACGG+TGG + chr2_3:4102178-4102197 Msa0272570:CDS 45.0%
CCCACCGTTGTTGATATCAA+GGG - chr2_3:4102182-4102201 None:intergenic 45.0%
CCCTTGATATCAACAACGGT+GGG + chr2_3:4102179-4102198 Msa0272570:CDS 45.0%
TCCCACCGTTGTTGATATCA+AGG - chr2_3:4102183-4102202 None:intergenic 45.0%
TCTCTTGGTTGCTGAATGCA+AGG + chr2_3:4102300-4102319 Msa0272570:three_prime_UTR 45.0%
TTGGTTGCTGAATGCAAGGA+AGG + chr2_3:4102304-4102323 Msa0272570:three_prime_UTR 45.0%
CAACACTAGTGAGTGCTTGA+TGG + chr2_3:4102362-4102381 Msa0272570:three_prime_UTR 45.0%
!!! ATATATTTTTAATATGTTTA+TGG + chr2_3:4100688-4100707 Msa0272570:intron 5.0%
!! AATATTTATCAAAAATATTA+AGG - chr2_3:4102482-4102501 None:intergenic 5.0%
! AAGCACGGTGTTAGTATGGC+AGG + chr2_3:4099669-4099688 Msa0272570:exon 50.0%
! AGCACGGTGTTAGTATGGCA+GGG + chr2_3:4099670-4099689 Msa0272570:exon 50.0%
GAGCGGGAAATAGTCAGACA+TGG - chr2_3:4099741-4099760 None:intergenic 50.0%
ATGGAGCTGAGAAGAAGCGA+AGG - chr2_3:4099766-4099785 None:intergenic 50.0%
ACTTCATACCCTGCTGCCAT+AGG + chr2_3:4099828-4099847 Msa0272570:CDS 50.0%
ATCCGTTATCCCTTGCTTCC+AGG + chr2_3:4100234-4100253 Msa0272570:intron 50.0%
GTCCTGGAAGCAAGGGATAA+CGG - chr2_3:4100239-4100258 None:intergenic 50.0%
GTCAGTACTAACTGAGGCTG+GGG + chr2_3:4100356-4100375 Msa0272570:CDS 50.0%
CTTGGCACGAGATATTGGAC+TGG - chr2_3:4100442-4100461 None:intergenic 50.0%
CAGTCCAATATCTCGTGCCA+AGG + chr2_3:4100440-4100459 Msa0272570:CDS 50.0%
ATTTCACCGCTGCCTAACCT+TGG - chr2_3:4100460-4100479 None:intergenic 50.0%
ATTCCCCCCGGTGCAAATTT+CGG + chr2_3:4101143-4101162 Msa0272570:intron 50.0%
AGTCCACCGAAATTTGCACC+GGG - chr2_3:4101152-4101171 None:intergenic 50.0%
! ACTTGCACTGCTTTAGGCCT+TGG + chr2_3:4101597-4101616 Msa0272570:CDS 50.0%
GAACCGGCCATTTCATTGGT+TGG - chr2_3:4101955-4101974 None:intergenic 50.0%
TCGAGAACCGGCCATTTCAT+TGG - chr2_3:4101959-4101978 None:intergenic 50.0%
! TTCGAGCATTGCTTCTCCTC+TGG - chr2_3:4102227-4102246 None:intergenic 50.0%
GCAACCAAGAGATTTCAGGC+AGG - chr2_3:4102292-4102311 None:intergenic 50.0%
GGCAACTCATACAGAAGCTG+AGG + chr2_3:4102383-4102402 Msa0272570:three_prime_UTR 50.0%
! GCACGGTGTTAGTATGGCAG+GGG + chr2_3:4099671-4099690 Msa0272570:exon 55.0%
AGAAGAAGCGAAGGAGGAGC+GGG - chr2_3:4099757-4099776 None:intergenic 55.0%
GAGAAGAAGCGAAGGAGGAG+CGG - chr2_3:4099758-4099777 None:intergenic 55.0%
GAGCTGAGAAGAAGCGAAGG+AGG - chr2_3:4099763-4099782 None:intergenic 55.0%
AGTACTAACTGAGGCTGGGG+TGG + chr2_3:4100359-4100378 Msa0272570:CDS 55.0%
GGTCTAAGTTCGATTCCCCC+CGG + chr2_3:4101131-4101150 Msa0272570:intron 55.0%
TCCACCGAAATTTGCACCGG+GGG - chr2_3:4101150-4101169 None:intergenic 55.0%
GTCCACCGAAATTTGCACCG+GGG - chr2_3:4101151-4101170 None:intergenic 55.0%
ATAGGGCTCCCGCAAGTAGA+CGG + chr2_3:4101202-4101221 Msa0272570:intron 55.0%
CAATCCCACCGTCTACTTGC+GGG - chr2_3:4101213-4101232 None:intergenic 55.0%
CCAATCCCACCGTCTACTTG+CGG - chr2_3:4101214-4101233 None:intergenic 55.0%
TGCGGCGAGTGAGAGGAAGA+TGG - chr2_3:4099785-4099804 None:intergenic 60.0%
CAGTGAATGCGGCGAGTGAG+AGG - chr2_3:4099792-4099811 None:intergenic 60.0%
CTCGTGCCAAGGTTAGGCAG+CGG + chr2_3:4100451-4100470 Msa0272570:intron 60.0%
CCACCGAAATTTGCACCGGG+GGG - chr2_3:4101149-4101168 None:intergenic 60.0%
CCGCAAGTAGACGGTGGGAT+TGG + chr2_3:4101211-4101230 Msa0272570:intron 60.0%
ATGCTTACCTCTCGGGGCCA+AGG - chr2_3:4101617-4101636 None:intergenic 60.0%
CCCCCCGGTGCAAATTTCGG+TGG + chr2_3:4101146-4101165 Msa0272570:intron 65.0%
GGCTCCCGCAAGTAGACGGT+GGG + chr2_3:4101206-4101225 Msa0272570:intron 65.0%
GACGGTGGGATTGGACCCCT+CGG + chr2_3:4101220-4101239 Msa0272570:intron 65.0%
CTTTAGGCCTTGGCCCCGAG+AGG + chr2_3:4101607-4101626 Msa0272570:CDS 65.0%
GGGCTCCCGCAAGTAGACGG+TGG + chr2_3:4101205-4101224 Msa0272570:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 4099611 4102638 4099611 ID=Msa0272570;Name=Msa0272570
chr2_3 mRNA 4099611 4102638 4099611 ID=Msa0272570-mRNA-1;Parent=Msa0272570;Name=Msa0272570-mRNA-1;_AED=0.17;_eAED=0.17;_QI=73|0.83|0.71|1|1|1|7|341|306
chr2_3 exon 4099611 4099849 4099611 ID=Msa0272570-mRNA-1:exon:2063;Parent=Msa0272570-mRNA-1
chr2_3 exon 4100024 4100181 4100024 ID=Msa0272570-mRNA-1:exon:2064;Parent=Msa0272570-mRNA-1
chr2_3 exon 4100342 4100461 4100342 ID=Msa0272570-mRNA-1:exon:2065;Parent=Msa0272570-mRNA-1
chr2_3 exon 4100551 4100658 4100551 ID=Msa0272570-mRNA-1:exon:2066;Parent=Msa0272570-mRNA-1
chr2_3 exon 4101307 4101468 4101307 ID=Msa0272570-mRNA-1:exon:2067;Parent=Msa0272570-mRNA-1
chr2_3 exon 4101549 4101628 4101549 ID=Msa0272570-mRNA-1:exon:2068;Parent=Msa0272570-mRNA-1
chr2_3 exon 4102171 4102638 4102171 ID=Msa0272570-mRNA-1:exon:2069;Parent=Msa0272570-mRNA-1
chr2_3 five_prime_UTR 4099611 4099683 4099611 ID=Msa0272570-mRNA-1:five_prime_utr;Parent=Msa0272570-mRNA-1
chr2_3 CDS 4099684 4099849 4099684 ID=Msa0272570-mRNA-1:cds;Parent=Msa0272570-mRNA-1
chr2_3 CDS 4100024 4100181 4100024 ID=Msa0272570-mRNA-1:cds;Parent=Msa0272570-mRNA-1
chr2_3 CDS 4100342 4100461 4100342 ID=Msa0272570-mRNA-1:cds;Parent=Msa0272570-mRNA-1
chr2_3 CDS 4100551 4100658 4100551 ID=Msa0272570-mRNA-1:cds;Parent=Msa0272570-mRNA-1
chr2_3 CDS 4101307 4101468 4101307 ID=Msa0272570-mRNA-1:cds;Parent=Msa0272570-mRNA-1
chr2_3 CDS 4101549 4101628 4101549 ID=Msa0272570-mRNA-1:cds;Parent=Msa0272570-mRNA-1
chr2_3 CDS 4102171 4102297 4102171 ID=Msa0272570-mRNA-1:cds;Parent=Msa0272570-mRNA-1
chr2_3 three_prime_UTR 4102298 4102638 4102298 ID=Msa0272570-mRNA-1:three_prime_utr;Parent=Msa0272570-mRNA-1
Gene Sequence

>Msa0272570

ATGGCAGGGGCTGTTGTGTTTTTGAACACCACTTTGTTGTGCTCACAACCATCACCATGTCTGACTATTTCCCGCTCCTCCTTCGCTTCTTCTCAGCTCCATCTTCCTCTCACTCGCCGCATTCACTGCTCAACTTCTACTTCTACTTCATACCCTGCTGCCATAGACAAACTTCCAAATAGTATTGATTTTTCTGTAACTGGTGGTGCATATGATTTCACAAAAGCAACAACATCACTAACCAATGAGTTAATCACTTCATCAAAGAAAGTCACTCTTTTAAGGCATGGTCTTAGCACTTGGAATGCTGAAAGTAGAATTCAGGGAAGCTCAGATTTGTCAGTACTAACTGAGGCTGGGGTGGAGCAAGCAGAGAGATGCAAGAAAGCATTGGAAAATATTCACTTTGACCAATGTCTTGCCAGTCCAATATCTCGTGCCAAGCAAACTGCTGAAATTATATGGCAAGGAAGAGAAAAACCATTGGTTTACACTGATTCACTTAAAGAAATATCTCTCTATCACCTTGAAGGATTGAAAAATGGTGAGCCTTTTGCTTCTAATTTGGAGGCAGTGGATGCTAAGCAAATATATAAGGAGGAATACAGAATCTGGAGAGAAGATCCAGCCAATTTTGTCATGAATGGTAGATATCCTGTACAAGATCTCTGGATAGCTGCAAGAGATTGTTGGAAGGAAATTTTGTTGTCACCTGGAGAAAGCTTTCTAGTTGTGACTCACAAATCAATATTGAGGGCATTAACTTGCACTGCTTTAGGCCTTGGCCCCGAGAGGTTTCGTTCCCTTGATATCAACAACGGTGGGATATGCGTATTCAACTTCAACACCAGAGGAGAAGCAATGCTCGAAGCTTTAAACTTGACAGCTCACATGTATAGCGATCATGTATATCCTGCCTGA

Protein sequence

>Msa0272570

MAGAVVFLNTTLLCSQPSPCLTISRSSFASSQLHLPLTRRIHCSTSTSTSYPAAIDKLPNSIDFSVTGGAYDFTKATTSLTNELITSSKKVTLLRHGLSTWNAESRIQGSSDLSVLTEAGVEQAERCKKALENIHFDQCLASPISRAKQTAEIIWQGREKPLVYTDSLKEISLYHLEGLKNGEPFASNLEAVDAKQIYKEEYRIWREDPANFVMNGRYPVQDLWIAARDCWKEILLSPGESFLVVTHKSILRALTCTALGLGPERFRSLDINNGGICVFNFNTRGEAMLEALNLTAHMYSDHVYPA*