AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0346050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346050 MtrunA17_Chr3g0078481 94.085 355 19 1 1 355 31 383 0.0 656
Msa0346050 MtrunA17_Chr3g0114921 66.000 350 114 4 3 350 97 443 2.25e-160 456
Msa0346050 MtrunA17_Chr3g0114931 63.037 349 120 5 6 352 98 439 2.25e-134 390
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346050 AT2G41705.3 58.523 352 137 4 2 350 111 456 9.14e-126 369
Msa0346050 AT2G41705.2 58.523 352 137 4 2 350 111 456 9.14e-126 369
Msa0346050 AT2G41705.4 58.523 352 137 4 2 350 111 456 9.14e-126 369
Msa0346050 AT2G41705.1 58.523 352 137 4 2 350 111 456 9.14e-126 369

Find 82 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATACTGTGTGCCTATT+TGG 0.130972 3_1:+5991803 Msa0346050:CDS
TAAAGAATTGCCAAAGTTAT+TGG 0.149331 3_1:+5988934 Msa0346050:CDS
TATACTCTGGACAAGTTATT+TGG 0.190006 3_1:+5989778 Msa0346050:CDS
CACAAAAGTATTACTTTCTA+TGG 0.230343 3_1:-5991855 None:intergenic
GTTTCAAGTGGCTTCTTATA+AGG 0.252360 3_1:+5991005 Msa0346050:CDS
CTCTTGGTGTGTGGATTAGA+TGG 0.264943 3_1:+5991224 Msa0346050:CDS
AATTCATCCATTCTCCAAAT+AGG 0.275234 3_1:-5991817 None:intergenic
GGATTAAATGGACATGGTTT+AGG 0.280572 3_1:+5991256 Msa0346050:CDS
TGCTTCATATTTGATTCATT+TGG 0.285021 3_1:+5988961 Msa0346050:CDS
GACCAAGAGGTTTGTTGAAT+TGG 0.286889 3_1:+5991278 Msa0346050:CDS
ATGCTTGAACTCAGTGTTAC+TGG 0.290373 3_1:+5990389 Msa0346050:CDS
CCTTGACCTTCCTTCTAATA+TGG 0.294484 3_1:+5989843 Msa0346050:CDS
GATTGTGATGCAATTGTAAA+AGG 0.326623 3_1:+5991637 Msa0346050:CDS
CAAACATCACTTAGCAGTTA+TGG 0.336380 3_1:+5991090 Msa0346050:CDS
ATCAAATGTGTCCAAGTATC+TGG 0.347261 3_1:+5990304 Msa0346050:CDS
CTGTGGATCGCTTGCATTGT+TGG 0.347554 3_1:+5991199 Msa0346050:CDS
GGCTTGTTATGGGGTATTAG+TGG 0.347642 3_1:+5991133 Msa0346050:CDS
AACTCAGTGTTACTGGGAAT+TGG 0.357866 3_1:+5990396 Msa0346050:CDS
AATTGGCTCTTTGTTGTGCT+TGG 0.359346 3_1:+5990413 Msa0346050:CDS
GTTGTGCTTGGCTTTCTAAT+AGG 0.360921 3_1:+5990425 Msa0346050:CDS
TACAATTGCATCACAATCTC+TGG 0.376843 3_1:-5991632 None:intergenic
GGCATACAGTTTGGCCTGTT+GGG 0.378588 3_1:+5991658 Msa0346050:CDS
AACTTTGGCAATTCTTTACT+AGG 0.383927 3_1:-5988929 None:intergenic
AACAAATTGCAGCTTCATCT+TGG 0.384111 3_1:+5988551 Msa0346050:five_prime_UTR
GCTTGCATTGTTGGACCTCT+TGG 0.384115 3_1:+5991208 Msa0346050:CDS
ATTGTAAAAGGCATACAGTT+TGG 0.389164 3_1:+5991649 Msa0346050:CDS
GACATACATAGCACATGAAA+TGG 0.396558 3_1:+5988511 Msa0346050:five_prime_UTR
GAGCAAGAACAGAGGAGGTT+AGG 0.397406 3_1:-5988399 None:intergenic
GAAGCCTTCCACCTTTGCCT+TGG 0.401735 3_1:-5991068 None:intergenic
GCACTAACAACTGGTTACTT+AGG 0.409745 3_1:+5990332 Msa0346050:CDS
GTGACAGTGCATTTACTTGA+AGG 0.413152 3_1:+5991875 Msa0346050:three_prime_UTR
GTCTAACAACGTTCAGCGGC+TGG 0.427914 3_1:+5990357 Msa0346050:CDS
CAGTACTCAAACAGCCCAAC+AGG 0.431398 3_1:-5991672 None:intergenic
TTGTTGAATTGGATGCGATT+TGG 0.438896 3_1:+5991289 Msa0346050:CDS
TGAGAGAAAGCGAGCACCCT+TGG 0.443628 3_1:+5991725 Msa0346050:CDS
CTGGCTGTTGCACTAACAAC+TGG 0.450496 3_1:+5990323 Msa0346050:CDS
AAAGTAGAGACCATATTAGA+AGG 0.455328 3_1:-5989853 None:intergenic
GAAGCATTATCCAATAACTT+TGG 0.459077 3_1:-5988944 None:intergenic
TATCCCAAATATGATGGAAA+AGG 0.466392 3_1:-5990969 None:intergenic
CACTAACAACTGGTTACTTA+GGG 0.468627 3_1:+5990333 Msa0346050:CDS
TAGTGCAACAGCCAGATACT+TGG 0.469450 3_1:-5990315 None:intergenic
AGGCATACAGTTTGGCCTGT+TGG 0.477755 3_1:+5991657 Msa0346050:CDS
TATTACTTTCTATGGTTACC+TGG 0.484941 3_1:-5991847 None:intergenic
TAAACCATGTCCATTTAATC+CGG 0.491358 3_1:-5991254 None:intergenic
CTAGTCACATGACCGACACT+AGG 0.497152 3_1:-5989802 None:intergenic
ATGGATGAATTATAAATGCC+AGG 0.500159 3_1:+5991829 Msa0346050:exon
TGTCTCTGCTGCTTGTATCA+TGG 0.508900 3_1:+5991327 Msa0346050:CDS
ATGATTGCTGAATTCAAGAA+TGG 0.511956 3_1:+5991163 Msa0346050:CDS
ATCCAATTCAACAAACCTCT+TGG 0.516439 3_1:-5991280 None:intergenic
TTTGGGATAGAAACTGCTAA+AGG 0.518940 3_1:+5990983 Msa0346050:CDS
CTGTGTGCCTATTTGGAGAA+TGG 0.525340 3_1:+5991810 Msa0346050:CDS
AGGTTCTGAAGACATAGAAC+AGG 0.525808 3_1:+5988649 Msa0346050:CDS
AGACAAGACCAAGGCAAAGG+TGG 0.527905 3_1:+5991060 Msa0346050:CDS
AGGAAGGTCAAGGTAAAGAA+TGG 0.536699 3_1:-5989833 None:intergenic
TGCTTGAACTCAGTGTTACT+GGG 0.546484 3_1:+5990390 Msa0346050:CDS
TTCATTGAACTCAGCGACAA+AGG 0.556646 3_1:-5991701 None:intergenic
GGTATTAACAAGATATACTC+TGG 0.561065 3_1:+5989765 Msa0346050:intron
TTGTTGGACCTCTTGGTGTG+TGG 0.564817 3_1:+5991215 Msa0346050:CDS
GTATAAACATATGCTCTCCA+AGG 0.565816 3_1:-5991742 None:intergenic
AAGTTATTTGGCCCTAGTGT+CGG 0.566597 3_1:+5989790 Msa0346050:CDS
CATGAAATGGAGCATGATGT+TGG 0.566790 3_1:+5988524 Msa0346050:five_prime_UTR
TAGAGACCATATTAGAAGGA+AGG 0.567138 3_1:-5989849 None:intergenic
AGTTTCTATCCCAAATATGA+TGG 0.569126 3_1:-5990975 None:intergenic
GGTCAAGGTAAAGAATGGTC+TGG 0.577428 3_1:-5989828 None:intergenic
AAGACCAAGGCAAAGGTGGA+AGG 0.588190 3_1:+5991064 Msa0346050:CDS
CAGAGACAAGACCAAGGCAA+AGG 0.597399 3_1:+5991057 Msa0346050:CDS
TAGTCACATGACCGACACTA+GGG 0.613234 3_1:-5989801 None:intergenic
AAACTGCTAAAGGTTTCAAG+TGG 0.621543 3_1:+5990993 Msa0346050:CDS
GGACATGGTTTAGGACCAAG+AGG 0.628280 3_1:+5991265 Msa0346050:CDS
CCATATTAGAAGGAAGGTCA+AGG 0.628711 3_1:-5989843 None:intergenic
AGAGAGGAGAGCAAGAACAG+AGG 0.628713 3_1:-5988407 None:intergenic
TTATCCGGATTAAATGGACA+TGG 0.632486 3_1:+5991250 Msa0346050:CDS
GGGAGTCTAACAACGTTCAG+CGG 0.633659 3_1:+5990353 Msa0346050:CDS
CATCTAATCCACACACCAAG+AGG 0.633898 3_1:-5991223 None:intergenic
TATAAACATATGCTCTCCAA+GGG 0.634225 3_1:-5991741 None:intergenic
GAGGAGAGCAAGAACAGAGG+AGG 0.639221 3_1:-5988404 None:intergenic
ATGGTGAAAATGCTTATCTG+TGG 0.657260 3_1:+5991182 Msa0346050:CDS
GAATTCATAGAGAAGAAGAG+AGG 0.668905 3_1:-5988423 None:intergenic
ACATCACTTAGCAGTTATGG+TGG 0.669583 3_1:+5991093 Msa0346050:CDS
GCTATAGTGCTATAGCATAG+CGG 0.734093 3_1:+5991986 Msa0346050:three_prime_UTR
AGTTAGCAGAGACAAGACCA+AGG 0.739505 3_1:+5991051 Msa0346050:CDS
TAGCTGCTACTTGAAAACAG+TGG 0.782474 3_1:-5991967 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATTTCAATTATTGTA+CGG + chr3_1:5989450-5989469 Msa0346050:intron 10.0%
!!! TTCTTATTATTTTGATATTA+TGG + chr3_1:5991537-5991556 Msa0346050:intron 10.0%
!!! TCTTATTATTTTGATATTAT+GGG + chr3_1:5991538-5991557 Msa0346050:intron 10.0%
!!! ATATGTTTTTAATGATTTGA+CGG - chr3_1:5988779-5988798 None:intergenic 15.0%
!! TCATTAAAAACATATATGAT+TGG + chr3_1:5988784-5988803 Msa0346050:intron 15.0%
!!! GTAAATTTTTTATACACTAT+CGG - chr3_1:5988843-5988862 None:intergenic 15.0%
!!! TTTTGTTTTCTTATTGTAAA+TGG + chr3_1:5988870-5988889 Msa0346050:intron 15.0%
!!! TCATTTTCTGTTTATAATAT+CGG + chr3_1:5989381-5989400 Msa0346050:intron 15.0%
!! TAATTTAAATAATCAATCAC+AGG - chr3_1:5990115-5990134 None:intergenic 15.0%
!! TAACAATAATCATGTATTAT+AGG + chr3_1:5990822-5990841 Msa0346050:intron 15.0%
!! AACAATAATCATGTATTATA+GGG + chr3_1:5990823-5990842 Msa0346050:intron 15.0%
!!! AGATTCAAAACATTTTTTGT+TGG + chr3_1:5988696-5988715 Msa0346050:intron 20.0%
!! ATTATATTGCCCAAAAATAA+AGG - chr3_1:5989653-5989672 None:intergenic 20.0%
!! TATAATGAACTTATGAATTC+TGG + chr3_1:5989667-5989686 Msa0346050:intron 20.0%
!! AAACTATAGTTTATGAGAAA+AGG + chr3_1:5990064-5990083 Msa0346050:intron 20.0%
!!! GTCTTTTTTTTTCAATGAAA+AGG + chr3_1:5991932-5991951 Msa0346050:three_prime_UTR 20.0%
!! ATTTTCATTGCTTAAAAGAG+GGG - chr3_1:5988627-5988646 None:intergenic 25.0%
!! CATTTTCATTGCTTAAAAGA+GGG - chr3_1:5988628-5988647 None:intergenic 25.0%
!! TCATTTTCATTGCTTAAAAG+AGG - chr3_1:5988629-5988648 None:intergenic 25.0%
!! CTTTTAAGCAATGAAAATGA+AGG + chr3_1:5988629-5988648 Msa0346050:CDS 25.0%
! TAAAGAATTGCCAAAGTTAT+TGG + chr3_1:5988934-5988953 Msa0346050:CDS 25.0%
! TGCTTCATATTTGATTCATT+TGG + chr3_1:5988961-5988980 Msa0346050:CDS 25.0%
!! ATTTTATCATTGAAGTTCAG+AGG - chr3_1:5989019-5989038 None:intergenic 25.0%
! AAATAAGGCTTAACCAAAAA+CGG - chr3_1:5989056-5989075 None:intergenic 25.0%
! AAATATCATAAAGCTGAAGT+TGG - chr3_1:5989237-5989256 None:intergenic 25.0%
!! AACTTCAGCTTTATGATATT+TGG + chr3_1:5989236-5989255 Msa0346050:intron 25.0%
!! GATAATCTTCATCATCTTTT+AGG + chr3_1:5989419-5989438 Msa0346050:intron 25.0%
! GTTGTTCATACTTTATACAA+TGG - chr3_1:5989504-5989523 None:intergenic 25.0%
!!! TTGTTGCATTCCTTTATTTT+TGG + chr3_1:5989640-5989659 Msa0346050:intron 25.0%
!!! TGTTGCATTCCTTTATTTTT+GGG + chr3_1:5989641-5989660 Msa0346050:intron 25.0%
!!! TTGTTTTGCTATTATAATGC+AGG + chr3_1:5989744-5989763 Msa0346050:intron 25.0%
! TTGATGTCATTATGATACAA+AGG - chr3_1:5989939-5989958 None:intergenic 25.0%
!! AAAAGTGTAGACTTAATTTC+TGG + chr3_1:5989964-5989983 Msa0346050:intron 25.0%
! CAACTATAGTTTATGAGAAA+AGG + chr3_1:5990041-5990060 Msa0346050:intron 25.0%
!! ACTTTTATGAATGTCTTTCT+AGG + chr3_1:5990232-5990251 Msa0346050:intron 25.0%
! TCTAATAGGTAATGTTAAGA+AGG + chr3_1:5990439-5990458 Msa0346050:intron 25.0%
!!! GTTTGATAAGTATGTTTTAG+TGG + chr3_1:5990465-5990484 Msa0346050:intron 25.0%
!!! ATAAGTATGTTTTAGTGGTA+TGG + chr3_1:5990470-5990489 Msa0346050:intron 25.0%
!! AGGATGAGCTTTTAAATAAT+TGG + chr3_1:5990921-5990940 Msa0346050:intron 25.0%
!! ATATGTTCCTCATTCTTTTT+AGG + chr3_1:5991775-5991794 Msa0346050:CDS 25.0%
!! TATGTTCCTCATTCTTTTTA+GGG + chr3_1:5991776-5991795 Msa0346050:CDS 25.0%
!!! CACAAAAGTATTACTTTCTA+TGG - chr3_1:5991858-5991877 None:intergenic 25.0%
! CATTGAAAAAAAAAGACAAC+AGG - chr3_1:5991929-5991948 None:intergenic 25.0%
!!! TTTTTTTCAATGAAAAGGTC+AGG + chr3_1:5991937-5991956 Msa0346050:three_prime_UTR 25.0%
AAAAATAGAGGAGACAGAAT+TGG - chr3_1:5988582-5988601 None:intergenic 30.0%
AGATGTTAAGGGAAAAATAG+AGG - chr3_1:5988594-5988613 None:intergenic 30.0%
GACATTTGTTCAGATGTTAA+GGG - chr3_1:5988605-5988624 None:intergenic 30.0%
AACTTTGGCAATTCTTTACT+AGG - chr3_1:5988932-5988951 None:intergenic 30.0%
! GAAGCATTATCCAATAACTT+TGG - chr3_1:5988947-5988966 None:intergenic 30.0%
!! TTGATTCATTTGGCTGTTTT+CGG + chr3_1:5988971-5988990 Msa0346050:CDS 30.0%
GTAATGGTCAAATGGAAATA+AGG - chr3_1:5989071-5989090 None:intergenic 30.0%
TATTTCCATTTGACCATTAC+TGG + chr3_1:5989071-5989090 Msa0346050:intron 30.0%
! ACTATTTTCAGTTCATGTTG+TGG + chr3_1:5989112-5989131 Msa0346050:intron 30.0%
CGAAATAAAACCTCATGTAA+TGG + chr3_1:5989317-5989336 Msa0346050:intron 30.0%
GTTTATAATATCGGTCGTAT+AGG + chr3_1:5989390-5989409 Msa0346050:intron 30.0%
!!! TTCATCATCTTTTAGGATCT+AGG + chr3_1:5989426-5989445 Msa0346050:intron 30.0%
GGTATTAACAAGATATACTC+TGG + chr3_1:5989765-5989784 Msa0346050:intron 30.0%
TATACTCTGGACAAGTTATT+TGG + chr3_1:5989778-5989797 Msa0346050:CDS 30.0%
AAAGTAGAGACCATATTAGA+AGG - chr3_1:5989856-5989875 None:intergenic 30.0%
GTCATTATGATACAAAGGAA+TGG - chr3_1:5989934-5989953 None:intergenic 30.0%
CGGAGCTTCTTAAAAATTTA+AGG - chr3_1:5990172-5990191 None:intergenic 30.0%
! TCAAAAAAGTCTGTTGCTTA+TGG - chr3_1:5990208-5990227 None:intergenic 30.0%
TTATGAATGTCTTTCTAGGT+TGG + chr3_1:5990236-5990255 Msa0346050:intron 30.0%
!!! TAGGTTGGTTCTTTTCTTAT+GGG + chr3_1:5990251-5990270 Msa0346050:intron 30.0%
TTAAATAATTGGAGTTCTGC+AGG + chr3_1:5990932-5990951 Msa0346050:intron 30.0%
TAAATAATTGGAGTTCTGCA+GGG + chr3_1:5990933-5990952 Msa0346050:intron 30.0%
! TTGCCTTTTCCATCATATTT+GGG + chr3_1:5990966-5990985 Msa0346050:CDS 30.0%
! TATCCCAAATATGATGGAAA+AGG - chr3_1:5990972-5990991 None:intergenic 30.0%
AGTTTCTATCCCAAATATGA+TGG - chr3_1:5990978-5990997 None:intergenic 30.0%
ATGATTGCTGAATTCAAGAA+TGG + chr3_1:5991163-5991182 Msa0346050:CDS 30.0%
TAAACCATGTCCATTTAATC+CGG - chr3_1:5991257-5991276 None:intergenic 30.0%
TCAAGTTCGTGTTTGTATAA+AGG + chr3_1:5991418-5991437 Msa0346050:intron 30.0%
ACAGATGAAACACATGTTAA+AGG + chr3_1:5991459-5991478 Msa0346050:intron 30.0%
ATATCTCACTTGTTTGATGT+AGG + chr3_1:5991603-5991622 Msa0346050:intron 30.0%
GATTGTGATGCAATTGTAAA+AGG + chr3_1:5991637-5991656 Msa0346050:CDS 30.0%
! ATTGTAAAAGGCATACAGTT+TGG + chr3_1:5991649-5991668 Msa0346050:CDS 30.0%
TATAAACATATGCTCTCCAA+GGG - chr3_1:5991744-5991763 None:intergenic 30.0%
TAAGATCCCTAAAAAGAATG+AGG - chr3_1:5991785-5991804 None:intergenic 30.0%
TAATATACTGTGTGCCTATT+TGG + chr3_1:5991803-5991822 Msa0346050:CDS 30.0%
AATTCATCCATTCTCCAAAT+AGG - chr3_1:5991820-5991839 None:intergenic 30.0%
ATGGATGAATTATAAATGCC+AGG + chr3_1:5991829-5991848 Msa0346050:exon 30.0%
TATTACTTTCTATGGTTACC+TGG - chr3_1:5991850-5991869 None:intergenic 30.0%
GAATTCATAGAGAAGAAGAG+AGG - chr3_1:5988426-5988445 None:intergenic 35.0%
GACATACATAGCACATGAAA+TGG + chr3_1:5988511-5988530 Msa0346050:five_prime_UTR 35.0%
AACAAATTGCAGCTTCATCT+TGG + chr3_1:5988551-5988570 Msa0346050:five_prime_UTR 35.0%
GGACATTTGTTCAGATGTTA+AGG - chr3_1:5988606-5988625 None:intergenic 35.0%
!! GATTGGTTGTGATTTGTTGA+CGG + chr3_1:5988801-5988820 Msa0346050:intron 35.0%
ATCGTAAATCCAACCAGTAA+TGG - chr3_1:5989087-5989106 None:intergenic 35.0%
!! TGTCCTGTATTTTTCAACCT+AGG + chr3_1:5989541-5989560 Msa0346050:intron 35.0%
!! GTCCTGTATTTTTCAACCTA+GGG + chr3_1:5989542-5989561 Msa0346050:intron 35.0%
! TTCCCTAGGTTGAAAAATAC+AGG - chr3_1:5989547-5989566 None:intergenic 35.0%
TCTGGTCATACTTTCATACA+AGG + chr3_1:5989685-5989704 Msa0346050:intron 35.0%
TAGAGACCATATTAGAAGGA+AGG - chr3_1:5989852-5989871 None:intergenic 35.0%
AATATGTATGTCAGAGAGAG+AGG - chr3_1:5989898-5989917 None:intergenic 35.0%
CTGGTAACATTAGACAATGA+TGG + chr3_1:5989983-5990002 Msa0346050:intron 35.0%
!!! CTAGGTTGGTTCTTTTCTTA+TGG + chr3_1:5990250-5990269 Msa0346050:intron 35.0%
!! TTGGTTCTTTTCTTATGGGA+TGG + chr3_1:5990255-5990274 Msa0346050:CDS 35.0%
! TCTTTTCTTATGGGATGGTT+TGG + chr3_1:5990260-5990279 Msa0346050:CDS 35.0%
ATCAAATGTGTCCAAGTATC+TGG + chr3_1:5990304-5990323 Msa0346050:CDS 35.0%
CACTAACAACTGGTTACTTA+GGG + chr3_1:5990333-5990352 Msa0346050:CDS 35.0%
GAGAGAGGATCAAATTACAT+TGG + chr3_1:5990616-5990635 Msa0346050:intron 35.0%
!! GAGAGTAAGTTTTGTAGTAC+AGG + chr3_1:5990772-5990791 Msa0346050:intron 35.0%
CACACACACATATATGAGAA+GGG - chr3_1:5990861-5990880 None:intergenic 35.0%
ACACACACACATATATGAGA+AGG - chr3_1:5990862-5990881 None:intergenic 35.0%
! GTTGCCTTTTCCATCATATT+TGG + chr3_1:5990965-5990984 Msa0346050:CDS 35.0%
! TTTGGGATAGAAACTGCTAA+AGG + chr3_1:5990983-5991002 Msa0346050:CDS 35.0%
AAACTGCTAAAGGTTTCAAG+TGG + chr3_1:5990993-5991012 Msa0346050:CDS 35.0%
! GTTTCAAGTGGCTTCTTATA+AGG + chr3_1:5991005-5991024 Msa0346050:CDS 35.0%
CAAACATCACTTAGCAGTTA+TGG + chr3_1:5991090-5991109 Msa0346050:CDS 35.0%
!!! GTGGTGTTTTTGCTGATTTT+AGG + chr3_1:5991112-5991131 Msa0346050:CDS 35.0%
!!! TGCTGATTTTAGGCTTGTTA+TGG + chr3_1:5991122-5991141 Msa0346050:CDS 35.0%
!!! GCTGATTTTAGGCTTGTTAT+GGG + chr3_1:5991123-5991142 Msa0346050:CDS 35.0%
!!! CTGATTTTAGGCTTGTTATG+GGG + chr3_1:5991124-5991143 Msa0346050:CDS 35.0%
ATGGTGAAAATGCTTATCTG+TGG + chr3_1:5991182-5991201 Msa0346050:CDS 35.0%
!! TGGATTAGATGGCTTTTATC+CGG + chr3_1:5991235-5991254 Msa0346050:CDS 35.0%
! TGGCTTTTATCCGGATTAAA+TGG + chr3_1:5991244-5991263 Msa0346050:CDS 35.0%
TTATCCGGATTAAATGGACA+TGG + chr3_1:5991250-5991269 Msa0346050:CDS 35.0%
GGATTAAATGGACATGGTTT+AGG + chr3_1:5991256-5991275 Msa0346050:CDS 35.0%
ATCCAATTCAACAAACCTCT+TGG - chr3_1:5991283-5991302 None:intergenic 35.0%
TTGTTGAATTGGATGCGATT+TGG + chr3_1:5991289-5991308 Msa0346050:CDS 35.0%
! TGTGTTGACAAAACTGCAAT+AGG - chr3_1:5991488-5991507 None:intergenic 35.0%
TACAATTGCATCACAATCTC+TGG - chr3_1:5991635-5991654 None:intergenic 35.0%
GTATAAACATATGCTCTCCA+AGG - chr3_1:5991745-5991764 None:intergenic 35.0%
CATGAAATGGAGCATGATGT+TGG + chr3_1:5988524-5988543 Msa0346050:five_prime_UTR 40.0%
!! AGGTTCTGAAGACATAGAAC+AGG + chr3_1:5988649-5988668 Msa0346050:CDS 40.0%
!! TTGGCTGTTTTCGGTATTCT+CGG + chr3_1:5988980-5988999 Msa0346050:CDS 40.0%
! TGCGAGTAGTTAACCGTTTT+TGG + chr3_1:5989040-5989059 Msa0346050:intron 40.0%
TCCATTTGACCATTACTGGT+TGG + chr3_1:5989075-5989094 Msa0346050:intron 40.0%
TCCAACCAGTAATGGTCAAA+TGG - chr3_1:5989079-5989098 None:intergenic 40.0%
ACATTGTACGCCATTACATG+AGG - chr3_1:5989330-5989349 None:intergenic 40.0%
GGAATAAATGCAACTACTGC+AGG - chr3_1:5989483-5989502 None:intergenic 40.0%
AAGTTATTTGGCCCTAGTGT+CGG + chr3_1:5989790-5989809 Msa0346050:CDS 40.0%
AGGAAGGTCAAGGTAAAGAA+TGG - chr3_1:5989836-5989855 None:intergenic 40.0%
CCATATTAGAAGGAAGGTCA+AGG - chr3_1:5989846-5989865 None:intergenic 40.0%
CCTTGACCTTCCTTCTAATA+TGG + chr3_1:5989843-5989862 Msa0346050:CDS 40.0%
CTTATGGAGAAGTTAGACGA+CGG - chr3_1:5990192-5990211 None:intergenic 40.0%
GCACTAACAACTGGTTACTT+AGG + chr3_1:5990332-5990351 Msa0346050:CDS 40.0%
ATGCTTGAACTCAGTGTTAC+TGG + chr3_1:5990389-5990408 Msa0346050:CDS 40.0%
! TGCTTGAACTCAGTGTTACT+GGG + chr3_1:5990390-5990409 Msa0346050:CDS 40.0%
! AACTCAGTGTTACTGGGAAT+TGG + chr3_1:5990396-5990415 Msa0346050:CDS 40.0%
! AATTGGCTCTTTGTTGTGCT+TGG + chr3_1:5990413-5990432 Msa0346050:CDS 40.0%
! GTTGTGCTTGGCTTTCTAAT+AGG + chr3_1:5990425-5990444 Msa0346050:CDS 40.0%
AATTATCGCAGTCTATGCAG+CGG + chr3_1:5990889-5990908 Msa0346050:intron 40.0%
ACATCACTTAGCAGTTATGG+TGG + chr3_1:5991093-5991112 Msa0346050:CDS 40.0%
!! GACCAAGAGGTTTGTTGAAT+TGG + chr3_1:5991278-5991297 Msa0346050:CDS 40.0%
CACGAACTTGAGATTGAGAA+AGG - chr3_1:5991409-5991428 None:intergenic 40.0%
TTCATTGAACTCAGCGACAA+AGG - chr3_1:5991704-5991723 None:intergenic 40.0%
GTGACAGTGCATTTACTTGA+AGG + chr3_1:5991875-5991894 Msa0346050:three_prime_UTR 40.0%
! TAGCTGCTACTTGAAAACAG+TGG - chr3_1:5991970-5991989 None:intergenic 40.0%
GCTATAGTGCTATAGCATAG+CGG + chr3_1:5991986-5992005 Msa0346050:three_prime_UTR 40.0%
TGACTGTTGTCTTCAGTTGC+AGG + chr3_1:5988904-5988923 Msa0346050:intron 45.0%
!! TGGCTGTTTTCGGTATTCTC+GGG + chr3_1:5988981-5989000 Msa0346050:CDS 45.0%
!!! CAGTTTTGAGCAGATTCCCT+AGG - chr3_1:5989561-5989580 None:intergenic 45.0%
TAGTCACATGACCGACACTA+GGG - chr3_1:5989804-5989823 None:intergenic 45.0%
GGTCAAGGTAAAGAATGGTC+TGG - chr3_1:5989831-5989850 None:intergenic 45.0%
TAGTGCAACAGCCAGATACT+TGG - chr3_1:5990318-5990337 None:intergenic 45.0%
CTATGCAGCGGTGAATTGAT+AGG + chr3_1:5990901-5990920 Msa0346050:intron 45.0%
AGTTAGCAGAGACAAGACCA+AGG + chr3_1:5991051-5991070 Msa0346050:CDS 45.0%
!! GGCTTGTTATGGGGTATTAG+TGG + chr3_1:5991133-5991152 Msa0346050:CDS 45.0%
CATCTAATCCACACACCAAG+AGG - chr3_1:5991226-5991245 None:intergenic 45.0%
!! CTCTTGGTGTGTGGATTAGA+TGG + chr3_1:5991224-5991243 Msa0346050:CDS 45.0%
! TGTCTCTGCTGCTTGTATCA+TGG + chr3_1:5991327-5991346 Msa0346050:CDS 45.0%
CTGTGTGCCTATTTGGAGAA+TGG + chr3_1:5991810-5991829 Msa0346050:CDS 45.0%
GAGCAAGAACAGAGGAGGTT+AGG - chr3_1:5988402-5988421 None:intergenic 50.0%
AGAGAGGAGAGCAAGAACAG+AGG - chr3_1:5988410-5988429 None:intergenic 50.0%
!! GGCTGTTTTCGGTATTCTCG+GGG + chr3_1:5988982-5989001 Msa0346050:CDS 50.0%
CTAGTCACATGACCGACACT+AGG - chr3_1:5989805-5989824 None:intergenic 50.0%
CTGGCTGTTGCACTAACAAC+TGG + chr3_1:5990323-5990342 Msa0346050:CDS 50.0%
GGGAGTCTAACAACGTTCAG+CGG + chr3_1:5990353-5990372 Msa0346050:CDS 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr3_1:5990585-5990604 Msa0346050:intron 50.0%
CAGAGACAAGACCAAGGCAA+AGG + chr3_1:5991057-5991076 Msa0346050:CDS 50.0%
AGACAAGACCAAGGCAAAGG+TGG + chr3_1:5991060-5991079 Msa0346050:CDS 50.0%
AAGACCAAGGCAAAGGTGGA+AGG + chr3_1:5991064-5991083 Msa0346050:CDS 50.0%
CTGTGGATCGCTTGCATTGT+TGG + chr3_1:5991199-5991218 Msa0346050:CDS 50.0%
GCTTGCATTGTTGGACCTCT+TGG + chr3_1:5991208-5991227 Msa0346050:CDS 50.0%
! TTGTTGGACCTCTTGGTGTG+TGG + chr3_1:5991215-5991234 Msa0346050:CDS 50.0%
! GGACATGGTTTAGGACCAAG+AGG + chr3_1:5991265-5991284 Msa0346050:CDS 50.0%
AGGCATACAGTTTGGCCTGT+TGG + chr3_1:5991657-5991676 Msa0346050:CDS 50.0%
GGCATACAGTTTGGCCTGTT+GGG + chr3_1:5991658-5991677 Msa0346050:CDS 50.0%
CAGTACTCAAACAGCCCAAC+AGG - chr3_1:5991675-5991694 None:intergenic 50.0%
GAGGAGAGCAAGAACAGAGG+AGG - chr3_1:5988407-5988426 None:intergenic 55.0%
AGAGAGGAACGAGCGAGGAA+GGG - chr3_1:5989882-5989901 None:intergenic 55.0%
GTCTAACAACGTTCAGCGGC+TGG + chr3_1:5990357-5990376 Msa0346050:CDS 55.0%
GAAGCCTTCCACCTTTGCCT+TGG - chr3_1:5991071-5991090 None:intergenic 55.0%
TGAGAGAAAGCGAGCACCCT+TGG + chr3_1:5991725-5991744 Msa0346050:CDS 55.0%
GAGAGAGGAACGAGCGAGGA+AGG - chr3_1:5989883-5989902 None:intergenic 60.0%
CAGAGAGAGAGGAACGAGCG+AGG - chr3_1:5989887-5989906 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 5988370 5992035 5988370 ID=Msa0346050;Name=Msa0346050
chr3_1 mRNA 5988370 5992035 5988370 ID=Msa0346050-mRNA-1;Parent=Msa0346050;Name=Msa0346050-mRNA-1;_AED=0.22;_eAED=0.22;_QI=228|1|1|1|0.66|0.71|7|192|355
chr3_1 exon 5988370 5988586 5988370 ID=Msa0346050-mRNA-1:exon:1737;Parent=Msa0346050-mRNA-1
chr3_1 exon 5988609 5988670 5988609 ID=Msa0346050-mRNA-1:exon:1738;Parent=Msa0346050-mRNA-1
chr3_1 exon 5988920 5989003 5988920 ID=Msa0346050-mRNA-1:exon:1739;Parent=Msa0346050-mRNA-1
chr3_1 exon 5989766 5989864 5989766 ID=Msa0346050-mRNA-1:exon:1740;Parent=Msa0346050-mRNA-1
chr3_1 exon 5990254 5990446 5990254 ID=Msa0346050-mRNA-1:exon:1741;Parent=Msa0346050-mRNA-1
chr3_1 exon 5990954 5991375 5990954 ID=Msa0346050-mRNA-1:exon:1742;Parent=Msa0346050-mRNA-1
chr3_1 exon 5991625 5992035 5991625 ID=Msa0346050-mRNA-1:exon:1743;Parent=Msa0346050-mRNA-1
chr3_1 five_prime_UTR 5988370 5988586 5988370 ID=Msa0346050-mRNA-1:five_prime_utr;Parent=Msa0346050-mRNA-1
chr3_1 five_prime_UTR 5988609 5988619 5988609 ID=Msa0346050-mRNA-1:five_prime_utr;Parent=Msa0346050-mRNA-1
chr3_1 CDS 5988620 5988670 5988620 ID=Msa0346050-mRNA-1:cds;Parent=Msa0346050-mRNA-1
chr3_1 CDS 5988920 5989003 5988920 ID=Msa0346050-mRNA-1:cds;Parent=Msa0346050-mRNA-1
chr3_1 CDS 5989766 5989864 5989766 ID=Msa0346050-mRNA-1:cds;Parent=Msa0346050-mRNA-1
chr3_1 CDS 5990254 5990446 5990254 ID=Msa0346050-mRNA-1:cds;Parent=Msa0346050-mRNA-1
chr3_1 CDS 5990954 5991375 5990954 ID=Msa0346050-mRNA-1:cds;Parent=Msa0346050-mRNA-1
chr3_1 CDS 5991625 5991843 5991625 ID=Msa0346050-mRNA-1:cds;Parent=Msa0346050-mRNA-1
chr3_1 three_prime_UTR 5991844 5992035 5991844 ID=Msa0346050-mRNA-1:three_prime_utr;Parent=Msa0346050-mRNA-1
Gene Sequence

>Msa0346050

ATGTCCCCTCTTTTAAGCAATGAAAATGAAGGTTCTGAAGACATAGAACAGTTGCAGGAACCTAGTAAAGAATTGCCAAAGTTATTGGATAATGCTTCATATTTGATTCATTTGGCTGTTTTCGGTATTCTCGGGGTATTAACAAGATATACTCTGGACAAGTTATTTGGCCCTAGTGTCGGTCATGTGACTAGTGACCAGACCATTCTTTACCTTGACCTTCCTTCTAATATGGTTGGTTCTTTTCTTATGGGATGGTTTGGTGTTGTATTCAAAGAAGACATATCAAATGTGTCCAAGTATCTGGCTGTTGCACTAACAACTGGTTACTTAGGGAGTCTAACAACGTTCAGCGGCTGGAATCAGAAAATGCTTGAACTCAGTGTTACTGGGAATTGGCTCTTTGTTGTGCTTGGCTTTCTAATAGGGTTATTTCTTGTTGCCTTTTCCATCATATTTGGGATAGAAACTGCTAAAGGTTTCAAGTGGCTTCTTATAAGGCTAAACGTGACTTCACGAAGTGAAGTTAGCAGAGACAAGACCAAGGCAAAGGTGGAAGGCTTCAAACATCACTTAGCAGTTATGGTGGTGTTTTTGCTGATTTTAGGCTTGTTATGGGGTATTAGTGGTGTATTAATGATTGCTGAATTCAAGAATGGTGAAAATGCTTATCTGTGGATCGCTTGCATTGTTGGACCTCTTGGTGTGTGGATTAGATGGCTTTTATCCGGATTAAATGGACATGGTTTAGGACCAAGAGGTTTGTTGAATTGGATGCGATTTGGAACTCTAATTGCAAATGTCTCTGCTGCTTGTATCATGGCTGCACTTGCTACAACAAAGATATATGTGAACACCAGAGATTGTGATGCAATTGTAAAAGGCATACAGTTTGGCCTGTTGGGCTGTTTGAGTACTGTCTCTACCTTTGTCGCTGAGTTCAATGAAATGAGAGAAAGCGAGCACCCTTGGAGAGCATATGTTTATACTATAATCACAATATGTTCCTCATTCTTTTTAGGGATCTTAATATACTGTGTGCCTATTTGGAGAATGGATGAATTATAA

Protein sequence

>Msa0346050

MSPLLSNENEGSEDIEQLQEPSKELPKLLDNASYLIHLAVFGILGVLTRYTLDKLFGPSVGHVTSDQTILYLDLPSNMVGSFLMGWFGVVFKEDISNVSKYLAVALTTGYLGSLTTFSGWNQKMLELSVTGNWLFVVLGFLIGLFLVAFSIIFGIETAKGFKWLLIRLNVTSRSEVSRDKTKAKVEGFKHHLAVMVVFLLILGLLWGISGVLMIAEFKNGENAYLWIACIVGPLGVWIRWLLSGLNGHGLGPRGLLNWMRFGTLIANVSAACIMAALATTKIYVNTRDCDAIVKGIQFGLLGCLSTVSTFVAEFNEMRESEHPWRAYVYTIITICSSFFLGILIYCVPIWRMDEL*