AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0438460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0438460 MtrunA17_Chr4g0000291 97.436 234 5 1 1 234 1 233 2.44e-173 476
Msa0438460 MtrunA17_Chr4g0000311 88.043 92 11 0 1 92 1 92 3.16e-57 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0438460 AT3G20270.1 54.884 215 94 3 14 228 21 232 1.85e-84 266
Msa0438460 AT3G20270.3 54.884 215 94 3 14 228 21 232 1.85e-84 266

Find 81 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTTATTATTAATATT+TGG 0.173219 3_3:-2709338 None:intergenic
TAGATAGAATGAAGAGAAAT+TGG 0.223435 3_3:-2709475 None:intergenic
GCTTGCTGTTCTTGACAATT+TGG 0.246299 3_3:+2710411 Msa0438460:CDS
TTGTACATTTAGTGTGTGTT+TGG 0.316067 3_3:-2711028 None:intergenic
AACACACACTTAATATGCTT+TGG 0.328513 3_3:-2710868 None:intergenic
ATCTCATCCACTTGTATATC+AGG 0.333453 3_3:-2709946 None:intergenic
TGTGTGTTTGGGAAGGCTTT+TGG 0.364833 3_3:-2711016 None:intergenic
ACTGATCTAGTGTAAGGATA+TGG 0.366614 3_3:-2710695 None:intergenic
CTGGCTAAACCTGGTGGAAT+AGG 0.372989 3_3:-2709755 None:intergenic
TGATGATTTCAGAAGGTTCA+TGG 0.389939 3_3:+2709888 Msa0438460:intron
AGAAACATTCGGTTCGGAAA+AGG 0.403331 3_3:-2709673 None:intergenic
ATGAACTTGTATCTCGAATC+TGG 0.411354 3_3:+2710389 Msa0438460:CDS
ACCTCTATAATCACATGATC+TGG 0.411609 3_3:-2709587 None:intergenic
TAAGAACAGAAGTGAGTGAT+TGG 0.415750 3_3:+2709615 Msa0438460:CDS
TTTCACGTTGGTTGTGCATT+GGG 0.419977 3_3:+2710956 Msa0438460:three_prime_UTR
CCAATACCATCTGCTTGGTT+AGG 0.422828 3_3:+2710824 Msa0438460:CDS
ATGGAAGTTGGTTGGTTGGT+TGG 0.431534 3_3:-2709384 None:intergenic
TCACCAATCCTTCTCAAACT+TGG 0.431534 3_3:+2709726 Msa0438460:CDS
TGTACATTTAGTGTGTGTTT+GGG 0.435246 3_3:-2711027 None:intergenic
TATTTGTTGACTTATATGTA+AGG 0.446098 3_3:-2709911 None:intergenic
CCTAACCAAGCAGATGGTAT+TGG 0.447991 3_3:-2710824 None:intergenic
ATACTTCACGGAACCATGAT+TGG 0.450822 3_3:+2710036 Msa0438460:CDS
TACAAGTGGATGAGATTGTT+GGG 0.457723 3_3:+2709953 Msa0438460:CDS
ATATGATGACTACATGTCAT+TGG 0.464014 3_3:+2711083 Msa0438460:three_prime_UTR
GAAACATTCGGTTCGGAAAA+GGG 0.464840 3_3:-2709672 None:intergenic
TGTTGGCATGTGCTAAAAGT+AGG 0.469168 3_3:+2710795 Msa0438460:CDS
ACTTTGACTGATCTAGTGTA+AGG 0.474599 3_3:-2710701 None:intergenic
AATCCTTCTCAAACTTGGCC+TGG 0.475632 3_3:+2709731 Msa0438460:CDS
GATGATGGAAGTTGGTTGGT+TGG 0.478335 3_3:-2709388 None:intergenic
GTTTGAGAAGGATTGGTGAA+TGG 0.482486 3_3:-2709722 None:intergenic
ACTTACCTTCTGGCTAAACC+TGG 0.484146 3_3:-2709764 None:intergenic
AGCAGCTTGCCAGAAACATT+CGG 0.484632 3_3:-2709684 None:intergenic
AGGCCAAGTTTGAGAAGGAT+TGG 0.491762 3_3:-2709729 None:intergenic
TCCACCATGAGGAGGCATAA+TGG 0.492329 3_3:-2710013 None:intergenic
TTCAGCCAATACCATCTGCT+TGG 0.495555 3_3:+2710819 Msa0438460:CDS
GCAGATCAGTTTATTGCCAA+TGG 0.496622 3_3:+2710346 Msa0438460:intron
AGATTCGAGATACAAGTTCA+TGG 0.497424 3_3:-2710387 None:intergenic
ACTAATAGAAGAAATCTGTA+TGG 0.499181 3_3:+2709523 Msa0438460:exon
GTTGGATGAAAATATGAGAA+TGG 0.502519 3_3:-2709450 None:intergenic
CTAGATCAGTCAAAGTTCAA+TGG 0.503366 3_3:+2710708 Msa0438460:CDS
ATAGAATGAAGAGAAATTGG+AGG 0.506493 3_3:-2709472 None:intergenic
CCTCATGGTGGAATACTTCA+CGG 0.510920 3_3:+2710024 Msa0438460:CDS
TACGTCTCTTGACTTGCCAT+TGG 0.513346 3_3:-2710362 None:intergenic
CTTGCCAGAAACATTCGGTT+CGG 0.516523 3_3:-2709679 None:intergenic
TGTAGATTATTATGATATGT+TGG 0.518385 3_3:+2710778 Msa0438460:CDS
CTTAAACGCCTTGCACATGA+AGG 0.518985 3_3:+2710460 Msa0438460:CDS
TCCAGATCATGTGATTATAG+AGG 0.519370 3_3:+2709586 Msa0438460:CDS
AATGAAGAGAAATTGGAGGT+TGG 0.520172 3_3:-2709468 None:intergenic
CATGTAGTCATCATATATAA+AGG 0.522666 3_3:-2711076 None:intergenic
GTGAATTGTGCATTGGGAAG+TGG 0.528753 3_3:+2710983 Msa0438460:three_prime_UTR
TTCCACCAGGTTTAGCCAGA+AGG 0.534865 3_3:+2709759 Msa0438460:CDS
AAGGCGTTTAAGTAAGCAAA+AGG 0.541095 3_3:-2710449 None:intergenic
TATGATATGATGATGGAAGT+TGG 0.542835 3_3:-2709396 None:intergenic
CATTTAGTGTGTGTTTGGGA+AGG 0.548836 3_3:-2711023 None:intergenic
AAGAACAGAAGTGAGTGATT+GGG 0.550455 3_3:+2709616 Msa0438460:CDS
GGGGCATGCCATACCAATCA+TGG 0.551161 3_3:-2710049 None:intergenic
CTTTCCATTATGCCTCCTCA+TGG 0.553623 3_3:+2710009 Msa0438460:CDS
AAACCTGGTGGAATAGGTCC+AGG 0.554978 3_3:-2709749 None:intergenic
GGTAGCGTGAATTGTGCATT+GGG 0.561073 3_3:+2710977 Msa0438460:three_prime_UTR
ATACAAGTGGATGAGATTGT+TGG 0.562800 3_3:+2709952 Msa0438460:CDS
CTACATGGTTGAAGCAATCA+CGG 0.564717 3_3:-2710760 None:intergenic
GATTCGAGATACAAGTTCAT+GGG 0.566517 3_3:-2710386 None:intergenic
TGGCCTGGACCTATTCCACC+AGG 0.589884 3_3:+2709746 Msa0438460:CDS
GATCAGTCAAAGTTCAATGG+AGG 0.590714 3_3:+2710711 Msa0438460:CDS
GGGTAGCGTGAATTGTGCAT+TGG 0.595883 3_3:+2710976 Msa0438460:three_prime_UTR
ACATATCATAATAATCTACA+TGG 0.601342 3_3:-2710775 None:intergenic
GGTCCAGGCCAAGTTTGAGA+AGG 0.605621 3_3:-2709734 None:intergenic
ATGATGTTATGATATGATGA+TGG 0.610214 3_3:-2709403 None:intergenic
ATATGATGATGGAAGTTGGT+TGG 0.610833 3_3:-2709392 None:intergenic
ATCAGTCAAAGTTCAATGGA+GGG 0.611627 3_3:+2710712 Msa0438460:CDS
TATCATGTGTGAAGAAGCAG+TGG 0.613560 3_3:+2709645 Msa0438460:CDS
TAATAACCTAACCAAGCAGA+TGG 0.613735 3_3:-2710830 None:intergenic
TTACATCTCCTTCATGTGCA+AGG 0.614326 3_3:-2710468 None:intergenic
TACCTTCTGGCTAAACCTGG+TGG 0.617625 3_3:-2709761 None:intergenic
TCCATTATGCCTCCTCATGG+TGG 0.618370 3_3:+2710012 Msa0438460:CDS
TTCTGATCCTGATATACAAG+TGG 0.625145 3_3:+2709939 Msa0438460:CDS
AGAATGGAGTTTCAAACATG+TGG 0.629676 3_3:-2709434 None:intergenic
TGAAGTATTCCACCATGAGG+AGG 0.648479 3_3:-2710021 None:intergenic
TTGGAGCTTTAGCCAAAACG+TGG 0.682733 3_3:-2710917 None:intergenic
CCGTGAAGTATTCCACCATG+AGG 0.714100 3_3:-2710024 None:intergenic
ATCATGTGTGAAGAAGCAGT+GGG 0.722271 3_3:+2709646 Msa0438460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTTATTATTAATATT+TGG - chr3_3:2709341-2709360 None:intergenic 0.0%
!! TATTATTTATTATTAATATT+TGG - chr3_3:2709341-2709360 None:intergenic 0.0%
!!! TCTATAATTTTCAACATAAT+TGG - chr3_3:2711056-2711075 None:intergenic 15.0%
!!! TCTATAATTTTCAACATAAT+TGG - chr3_3:2711056-2711075 None:intergenic 15.0%
!!! TATTTGTTGACTTATATGTA+AGG - chr3_3:2709914-2709933 None:intergenic 20.0%
!! TTCATTTCAATTAGAATCAT+AGG - chr3_3:2710219-2710238 None:intergenic 20.0%
!! ACATATCATAATAATCTACA+TGG - chr3_3:2710778-2710797 None:intergenic 20.0%
!! TGTAGATTATTATGATATGT+TGG + chr3_3:2710778-2710797 Msa0438460:CDS 20.0%
!!! TTTTTTCATTTTCAACAGTA+TGG - chr3_3:2710896-2710915 None:intergenic 20.0%
!!! TATTTGTTGACTTATATGTA+AGG - chr3_3:2709914-2709933 None:intergenic 20.0%
!! TTCATTTCAATTAGAATCAT+AGG - chr3_3:2710219-2710238 None:intergenic 20.0%
!! ACATATCATAATAATCTACA+TGG - chr3_3:2710778-2710797 None:intergenic 20.0%
!! TGTAGATTATTATGATATGT+TGG + chr3_3:2710778-2710797 Msa0438460:CDS 20.0%
!!! TTTTTTCATTTTCAACAGTA+TGG - chr3_3:2710896-2710915 None:intergenic 20.0%
! ATGATGTTATGATATGATGA+TGG - chr3_3:2709406-2709425 None:intergenic 25.0%
! TAGATAGAATGAAGAGAAAT+TGG - chr3_3:2709478-2709497 None:intergenic 25.0%
! ACTAATAGAAGAAATCTGTA+TGG + chr3_3:2709523-2709542 Msa0438460:exon 25.0%
! TGTAACAACAAAAGTAAAGA+AGG - chr3_3:2710076-2710095 None:intergenic 25.0%
!! CTTATATCTTTATGTCCTTT+TGG + chr3_3:2710096-2710115 Msa0438460:intron 25.0%
!! AATGAATTAGTTCTCTAAGT+TGG + chr3_3:2710233-2710252 Msa0438460:intron 25.0%
! ATTTCTTAGATTTGTGCAAA+AGG + chr3_3:2710563-2710582 Msa0438460:intron 25.0%
!! AAATGAAAAAAACCACGTTT+TGG + chr3_3:2710905-2710924 Msa0438460:three_prime_UTR 25.0%
! CATGTAGTCATCATATATAA+AGG - chr3_3:2711079-2711098 None:intergenic 25.0%
! ATGATGTTATGATATGATGA+TGG - chr3_3:2709406-2709425 None:intergenic 25.0%
! TAGATAGAATGAAGAGAAAT+TGG - chr3_3:2709478-2709497 None:intergenic 25.0%
! ACTAATAGAAGAAATCTGTA+TGG + chr3_3:2709523-2709542 Msa0438460:exon 25.0%
! TGTAACAACAAAAGTAAAGA+AGG - chr3_3:2710076-2710095 None:intergenic 25.0%
!! CTTATATCTTTATGTCCTTT+TGG + chr3_3:2710096-2710115 Msa0438460:intron 25.0%
!! AATGAATTAGTTCTCTAAGT+TGG + chr3_3:2710233-2710252 Msa0438460:intron 25.0%
! ATTTCTTAGATTTGTGCAAA+AGG + chr3_3:2710563-2710582 Msa0438460:intron 25.0%
!! AAATGAAAAAAACCACGTTT+TGG + chr3_3:2710905-2710924 Msa0438460:three_prime_UTR 25.0%
! CATGTAGTCATCATATATAA+AGG - chr3_3:2711079-2711098 None:intergenic 25.0%
!! TATGATATGATGATGGAAGT+TGG - chr3_3:2709399-2709418 None:intergenic 30.0%
GTTGGATGAAAATATGAGAA+TGG - chr3_3:2709453-2709472 None:intergenic 30.0%
ATAGAATGAAGAGAAATTGG+AGG - chr3_3:2709475-2709494 None:intergenic 30.0%
! ATCAAGTTTTACTTACCTTC+TGG - chr3_3:2709777-2709796 None:intergenic 30.0%
GATCAAAGATTGTTACAATC+AGG + chr3_3:2709794-2709813 Msa0438460:intron 30.0%
!! TGTATGTTGATGATTTCAGA+AGG + chr3_3:2709881-2709900 Msa0438460:intron 30.0%
ACAACAAAAGTAAAGAAGGT+GGG - chr3_3:2710072-2710091 None:intergenic 30.0%
AACAACAAAAGTAAAGAAGG+TGG - chr3_3:2710073-2710092 None:intergenic 30.0%
AGGATCAATTCAGTTTGATA+TGG - chr3_3:2710199-2710218 None:intergenic 30.0%
TTGGTTTATCTTGTTCTTGT+TGG + chr3_3:2710252-2710271 Msa0438460:intron 30.0%
AAAGAGACAAAATGTTGATG+AGG - chr3_3:2710631-2710650 None:intergenic 30.0%
! TTTTTGCAATAACTTTCAGC+AGG + chr3_3:2710664-2710683 Msa0438460:intron 30.0%
AACACACACTTAATATGCTT+TGG - chr3_3:2710871-2710890 None:intergenic 30.0%
TGTACATTTAGTGTGTGTTT+GGG - chr3_3:2711030-2711049 None:intergenic 30.0%
TTGTACATTTAGTGTGTGTT+TGG - chr3_3:2711031-2711050 None:intergenic 30.0%
ATATGATGACTACATGTCAT+TGG + chr3_3:2711083-2711102 Msa0438460:three_prime_UTR 30.0%
!! TATGATATGATGATGGAAGT+TGG - chr3_3:2709399-2709418 None:intergenic 30.0%
GTTGGATGAAAATATGAGAA+TGG - chr3_3:2709453-2709472 None:intergenic 30.0%
ATAGAATGAAGAGAAATTGG+AGG - chr3_3:2709475-2709494 None:intergenic 30.0%
! ATCAAGTTTTACTTACCTTC+TGG - chr3_3:2709777-2709796 None:intergenic 30.0%
GATCAAAGATTGTTACAATC+AGG + chr3_3:2709794-2709813 Msa0438460:intron 30.0%
!! TGTATGTTGATGATTTCAGA+AGG + chr3_3:2709881-2709900 Msa0438460:intron 30.0%
ACAACAAAAGTAAAGAAGGT+GGG - chr3_3:2710072-2710091 None:intergenic 30.0%
AACAACAAAAGTAAAGAAGG+TGG - chr3_3:2710073-2710092 None:intergenic 30.0%
AGGATCAATTCAGTTTGATA+TGG - chr3_3:2710199-2710218 None:intergenic 30.0%
TTGGTTTATCTTGTTCTTGT+TGG + chr3_3:2710252-2710271 Msa0438460:intron 30.0%
AAAGAGACAAAATGTTGATG+AGG - chr3_3:2710631-2710650 None:intergenic 30.0%
! TTTTTGCAATAACTTTCAGC+AGG + chr3_3:2710664-2710683 Msa0438460:intron 30.0%
AACACACACTTAATATGCTT+TGG - chr3_3:2710871-2710890 None:intergenic 30.0%
TGTACATTTAGTGTGTGTTT+GGG - chr3_3:2711030-2711049 None:intergenic 30.0%
TTGTACATTTAGTGTGTGTT+TGG - chr3_3:2711031-2711050 None:intergenic 30.0%
ATATGATGACTACATGTCAT+TGG + chr3_3:2711083-2711102 Msa0438460:three_prime_UTR 30.0%
!! ATATGATGATGGAAGTTGGT+TGG - chr3_3:2709395-2709414 None:intergenic 35.0%
AGAATGGAGTTTCAAACATG+TGG - chr3_3:2709437-2709456 None:intergenic 35.0%
AATGAAGAGAAATTGGAGGT+TGG - chr3_3:2709471-2709490 None:intergenic 35.0%
TCCAGATCATGTGATTATAG+AGG + chr3_3:2709586-2709605 Msa0438460:CDS 35.0%
ACCTCTATAATCACATGATC+TGG - chr3_3:2709590-2709609 None:intergenic 35.0%
TAAGAACAGAAGTGAGTGAT+TGG + chr3_3:2709615-2709634 Msa0438460:CDS 35.0%
AAGAACAGAAGTGAGTGATT+GGG + chr3_3:2709616-2709635 Msa0438460:CDS 35.0%
! TTACAATCAGGATTCGAGTT+CGG + chr3_3:2709806-2709825 Msa0438460:intron 35.0%
TGATGATTTCAGAAGGTTCA+TGG + chr3_3:2709888-2709907 Msa0438460:intron 35.0%
TTCTGATCCTGATATACAAG+TGG + chr3_3:2709939-2709958 Msa0438460:CDS 35.0%
ATCTCATCCACTTGTATATC+AGG - chr3_3:2709949-2709968 None:intergenic 35.0%
ATACAAGTGGATGAGATTGT+TGG + chr3_3:2709952-2709971 Msa0438460:CDS 35.0%
TACAAGTGGATGAGATTGTT+GGG + chr3_3:2709953-2709972 Msa0438460:CDS 35.0%
CAACAAAAGTAAAGAAGGTG+GGG - chr3_3:2710071-2710090 None:intergenic 35.0%
TTGTTACGGGATAAACCAAA+AGG - chr3_3:2710114-2710133 None:intergenic 35.0%
ACTCGACATAAGAGTTGTTA+CGG - chr3_3:2710128-2710147 None:intergenic 35.0%
!! ACTCTTATGTCGAGTTTTGT+AGG + chr3_3:2710133-2710152 Msa0438460:intron 35.0%
TTGTAGGAGAGAGGTTAATA+TGG + chr3_3:2710149-2710168 Msa0438460:intron 35.0%
GATTCGAGATACAAGTTCAT+GGG - chr3_3:2710389-2710408 None:intergenic 35.0%
AGATTCGAGATACAAGTTCA+TGG - chr3_3:2710390-2710409 None:intergenic 35.0%
ATGAACTTGTATCTCGAATC+TGG + chr3_3:2710389-2710408 Msa0438460:CDS 35.0%
! AAGGCGTTTAAGTAAGCAAA+AGG - chr3_3:2710452-2710471 None:intergenic 35.0%
ACTGATCTAGTGTAAGGATA+TGG - chr3_3:2710698-2710717 None:intergenic 35.0%
ACTTTGACTGATCTAGTGTA+AGG - chr3_3:2710704-2710723 None:intergenic 35.0%
CTAGATCAGTCAAAGTTCAA+TGG + chr3_3:2710708-2710727 Msa0438460:CDS 35.0%
ATCAGTCAAAGTTCAATGGA+GGG + chr3_3:2710712-2710731 Msa0438460:CDS 35.0%
TAATAACCTAACCAAGCAGA+TGG - chr3_3:2710833-2710852 None:intergenic 35.0%
!! TTTTGGCTAAAGCTCCAATT+TGG + chr3_3:2710922-2710941 Msa0438460:three_prime_UTR 35.0%
AAAAAGCAGAAGCTCCAAAT+TGG - chr3_3:2710939-2710958 None:intergenic 35.0%
!! ATATGATGATGGAAGTTGGT+TGG - chr3_3:2709395-2709414 None:intergenic 35.0%
AGAATGGAGTTTCAAACATG+TGG - chr3_3:2709437-2709456 None:intergenic 35.0%
AATGAAGAGAAATTGGAGGT+TGG - chr3_3:2709471-2709490 None:intergenic 35.0%
TCCAGATCATGTGATTATAG+AGG + chr3_3:2709586-2709605 Msa0438460:CDS 35.0%
ACCTCTATAATCACATGATC+TGG - chr3_3:2709590-2709609 None:intergenic 35.0%
TAAGAACAGAAGTGAGTGAT+TGG + chr3_3:2709615-2709634 Msa0438460:CDS 35.0%
AAGAACAGAAGTGAGTGATT+GGG + chr3_3:2709616-2709635 Msa0438460:CDS 35.0%
! TTACAATCAGGATTCGAGTT+CGG + chr3_3:2709806-2709825 Msa0438460:intron 35.0%
TGATGATTTCAGAAGGTTCA+TGG + chr3_3:2709888-2709907 Msa0438460:intron 35.0%
TTCTGATCCTGATATACAAG+TGG + chr3_3:2709939-2709958 Msa0438460:CDS 35.0%
ATCTCATCCACTTGTATATC+AGG - chr3_3:2709949-2709968 None:intergenic 35.0%
ATACAAGTGGATGAGATTGT+TGG + chr3_3:2709952-2709971 Msa0438460:CDS 35.0%
TACAAGTGGATGAGATTGTT+GGG + chr3_3:2709953-2709972 Msa0438460:CDS 35.0%
CAACAAAAGTAAAGAAGGTG+GGG - chr3_3:2710071-2710090 None:intergenic 35.0%
TTGTTACGGGATAAACCAAA+AGG - chr3_3:2710114-2710133 None:intergenic 35.0%
ACTCGACATAAGAGTTGTTA+CGG - chr3_3:2710128-2710147 None:intergenic 35.0%
!! ACTCTTATGTCGAGTTTTGT+AGG + chr3_3:2710133-2710152 Msa0438460:intron 35.0%
TTGTAGGAGAGAGGTTAATA+TGG + chr3_3:2710149-2710168 Msa0438460:intron 35.0%
GATTCGAGATACAAGTTCAT+GGG - chr3_3:2710389-2710408 None:intergenic 35.0%
AGATTCGAGATACAAGTTCA+TGG - chr3_3:2710390-2710409 None:intergenic 35.0%
ATGAACTTGTATCTCGAATC+TGG + chr3_3:2710389-2710408 Msa0438460:CDS 35.0%
! AAGGCGTTTAAGTAAGCAAA+AGG - chr3_3:2710452-2710471 None:intergenic 35.0%
ACTGATCTAGTGTAAGGATA+TGG - chr3_3:2710698-2710717 None:intergenic 35.0%
ACTTTGACTGATCTAGTGTA+AGG - chr3_3:2710704-2710723 None:intergenic 35.0%
CTAGATCAGTCAAAGTTCAA+TGG + chr3_3:2710708-2710727 Msa0438460:CDS 35.0%
ATCAGTCAAAGTTCAATGGA+GGG + chr3_3:2710712-2710731 Msa0438460:CDS 35.0%
TAATAACCTAACCAAGCAGA+TGG - chr3_3:2710833-2710852 None:intergenic 35.0%
!! TTTTGGCTAAAGCTCCAATT+TGG + chr3_3:2710922-2710941 Msa0438460:three_prime_UTR 35.0%
AAAAAGCAGAAGCTCCAAAT+TGG - chr3_3:2710939-2710958 None:intergenic 35.0%
TATCATGTGTGAAGAAGCAG+TGG + chr3_3:2709645-2709664 Msa0438460:CDS 40.0%
ATCATGTGTGAAGAAGCAGT+GGG + chr3_3:2709646-2709665 Msa0438460:CDS 40.0%
!! GAAACATTCGGTTCGGAAAA+GGG - chr3_3:2709675-2709694 None:intergenic 40.0%
!! AGAAACATTCGGTTCGGAAA+AGG - chr3_3:2709676-2709695 None:intergenic 40.0%
! TTTTCCGAACCGAATGTTTC+TGG + chr3_3:2709675-2709694 Msa0438460:CDS 40.0%
! GTTTGAGAAGGATTGGTGAA+TGG - chr3_3:2709725-2709744 None:intergenic 40.0%
TCACCAATCCTTCTCAAACT+TGG + chr3_3:2709726-2709745 Msa0438460:CDS 40.0%
ATACTTCACGGAACCATGAT+TGG + chr3_3:2710036-2710055 Msa0438460:CDS 40.0%
CTCGACATAAGAGTTGTTAC+GGG - chr3_3:2710127-2710146 None:intergenic 40.0%
GCAGATCAGTTTATTGCCAA+TGG + chr3_3:2710346-2710365 Msa0438460:intron 40.0%
!! GCTTGCTGTTCTTGACAATT+TGG + chr3_3:2710411-2710430 Msa0438460:CDS 40.0%
TTACATCTCCTTCATGTGCA+AGG - chr3_3:2710471-2710490 None:intergenic 40.0%
GATCAGTCAAAGTTCAATGG+AGG + chr3_3:2710711-2710730 Msa0438460:CDS 40.0%
CTACATGGTTGAAGCAATCA+CGG - chr3_3:2710763-2710782 None:intergenic 40.0%
TGTTGGCATGTGCTAAAAGT+AGG + chr3_3:2710795-2710814 Msa0438460:CDS 40.0%
!! TTTTCACGTTGGTTGTGCAT+TGG + chr3_3:2710955-2710974 Msa0438460:three_prime_UTR 40.0%
! TTTCACGTTGGTTGTGCATT+GGG + chr3_3:2710956-2710975 Msa0438460:three_prime_UTR 40.0%
CATTTAGTGTGTGTTTGGGA+AGG - chr3_3:2711026-2711045 None:intergenic 40.0%
TATCATGTGTGAAGAAGCAG+TGG + chr3_3:2709645-2709664 Msa0438460:CDS 40.0%
ATCATGTGTGAAGAAGCAGT+GGG + chr3_3:2709646-2709665 Msa0438460:CDS 40.0%
!! GAAACATTCGGTTCGGAAAA+GGG - chr3_3:2709675-2709694 None:intergenic 40.0%
!! AGAAACATTCGGTTCGGAAA+AGG - chr3_3:2709676-2709695 None:intergenic 40.0%
! TTTTCCGAACCGAATGTTTC+TGG + chr3_3:2709675-2709694 Msa0438460:CDS 40.0%
! GTTTGAGAAGGATTGGTGAA+TGG - chr3_3:2709725-2709744 None:intergenic 40.0%
TCACCAATCCTTCTCAAACT+TGG + chr3_3:2709726-2709745 Msa0438460:CDS 40.0%
ATACTTCACGGAACCATGAT+TGG + chr3_3:2710036-2710055 Msa0438460:CDS 40.0%
CTCGACATAAGAGTTGTTAC+GGG - chr3_3:2710127-2710146 None:intergenic 40.0%
GCAGATCAGTTTATTGCCAA+TGG + chr3_3:2710346-2710365 Msa0438460:intron 40.0%
!! GCTTGCTGTTCTTGACAATT+TGG + chr3_3:2710411-2710430 Msa0438460:CDS 40.0%
TTACATCTCCTTCATGTGCA+AGG - chr3_3:2710471-2710490 None:intergenic 40.0%
GATCAGTCAAAGTTCAATGG+AGG + chr3_3:2710711-2710730 Msa0438460:CDS 40.0%
CTACATGGTTGAAGCAATCA+CGG - chr3_3:2710763-2710782 None:intergenic 40.0%
TGTTGGCATGTGCTAAAAGT+AGG + chr3_3:2710795-2710814 Msa0438460:CDS 40.0%
!! TTTTCACGTTGGTTGTGCAT+TGG + chr3_3:2710955-2710974 Msa0438460:three_prime_UTR 40.0%
! TTTCACGTTGGTTGTGCATT+GGG + chr3_3:2710956-2710975 Msa0438460:three_prime_UTR 40.0%
CATTTAGTGTGTGTTTGGGA+AGG - chr3_3:2711026-2711045 None:intergenic 40.0%
! ATGGAAGTTGGTTGGTTGGT+TGG - chr3_3:2709387-2709406 None:intergenic 45.0%
!! GATGATGGAAGTTGGTTGGT+TGG - chr3_3:2709391-2709410 None:intergenic 45.0%
CTTGCCAGAAACATTCGGTT+CGG - chr3_3:2709682-2709701 None:intergenic 45.0%
AGCAGCTTGCCAGAAACATT+CGG - chr3_3:2709687-2709706 None:intergenic 45.0%
AGGCCAAGTTTGAGAAGGAT+TGG - chr3_3:2709732-2709751 None:intergenic 45.0%
AATCCTTCTCAAACTTGGCC+TGG + chr3_3:2709731-2709750 Msa0438460:CDS 45.0%
! ACTTACCTTCTGGCTAAACC+TGG - chr3_3:2709767-2709786 None:intergenic 45.0%
CTTTCCATTATGCCTCCTCA+TGG + chr3_3:2710009-2710028 Msa0438460:CDS 45.0%
! TGAAGTATTCCACCATGAGG+AGG - chr3_3:2710024-2710043 None:intergenic 45.0%
! CCTCATGGTGGAATACTTCA+CGG + chr3_3:2710024-2710043 Msa0438460:CDS 45.0%
TCACGGAACCATGATTGGTA+TGG + chr3_3:2710041-2710060 Msa0438460:intron 45.0%
!! TGTCGAGTTTTGTAGGAGAG+AGG + chr3_3:2710140-2710159 Msa0438460:intron 45.0%
!! TACGTCTCTTGACTTGCCAT+TGG - chr3_3:2710365-2710384 None:intergenic 45.0%
CTTAAACGCCTTGCACATGA+AGG + chr3_3:2710460-2710479 Msa0438460:CDS 45.0%
TTCAGCCAATACCATCTGCT+TGG + chr3_3:2710819-2710838 Msa0438460:CDS 45.0%
CCTAACCAAGCAGATGGTAT+TGG - chr3_3:2710827-2710846 None:intergenic 45.0%
CCAATACCATCTGCTTGGTT+AGG + chr3_3:2710824-2710843 Msa0438460:CDS 45.0%
! TTGGAGCTTTAGCCAAAACG+TGG - chr3_3:2710920-2710939 None:intergenic 45.0%
!!! GAGCTTCTGCTTTTTCACGT+TGG + chr3_3:2710944-2710963 Msa0438460:three_prime_UTR 45.0%
GGTAGCGTGAATTGTGCATT+GGG + chr3_3:2710977-2710996 Msa0438460:three_prime_UTR 45.0%
GTGAATTGTGCATTGGGAAG+TGG + chr3_3:2710983-2711002 Msa0438460:three_prime_UTR 45.0%
! TGTGTGTTTGGGAAGGCTTT+TGG - chr3_3:2711019-2711038 None:intergenic 45.0%
! ATGGAAGTTGGTTGGTTGGT+TGG - chr3_3:2709387-2709406 None:intergenic 45.0%
!! GATGATGGAAGTTGGTTGGT+TGG - chr3_3:2709391-2709410 None:intergenic 45.0%
CTTGCCAGAAACATTCGGTT+CGG - chr3_3:2709682-2709701 None:intergenic 45.0%
AGCAGCTTGCCAGAAACATT+CGG - chr3_3:2709687-2709706 None:intergenic 45.0%
AGGCCAAGTTTGAGAAGGAT+TGG - chr3_3:2709732-2709751 None:intergenic 45.0%
AATCCTTCTCAAACTTGGCC+TGG + chr3_3:2709731-2709750 Msa0438460:CDS 45.0%
! ACTTACCTTCTGGCTAAACC+TGG - chr3_3:2709767-2709786 None:intergenic 45.0%
CTTTCCATTATGCCTCCTCA+TGG + chr3_3:2710009-2710028 Msa0438460:CDS 45.0%
! TGAAGTATTCCACCATGAGG+AGG - chr3_3:2710024-2710043 None:intergenic 45.0%
! CCTCATGGTGGAATACTTCA+CGG + chr3_3:2710024-2710043 Msa0438460:CDS 45.0%
TCACGGAACCATGATTGGTA+TGG + chr3_3:2710041-2710060 Msa0438460:intron 45.0%
!! TGTCGAGTTTTGTAGGAGAG+AGG + chr3_3:2710140-2710159 Msa0438460:intron 45.0%
!! TACGTCTCTTGACTTGCCAT+TGG - chr3_3:2710365-2710384 None:intergenic 45.0%
CTTAAACGCCTTGCACATGA+AGG + chr3_3:2710460-2710479 Msa0438460:CDS 45.0%
TTCAGCCAATACCATCTGCT+TGG + chr3_3:2710819-2710838 Msa0438460:CDS 45.0%
CCTAACCAAGCAGATGGTAT+TGG - chr3_3:2710827-2710846 None:intergenic 45.0%
CCAATACCATCTGCTTGGTT+AGG + chr3_3:2710824-2710843 Msa0438460:CDS 45.0%
! TTGGAGCTTTAGCCAAAACG+TGG - chr3_3:2710920-2710939 None:intergenic 45.0%
!!! GAGCTTCTGCTTTTTCACGT+TGG + chr3_3:2710944-2710963 Msa0438460:three_prime_UTR 45.0%
GGTAGCGTGAATTGTGCATT+GGG + chr3_3:2710977-2710996 Msa0438460:three_prime_UTR 45.0%
GTGAATTGTGCATTGGGAAG+TGG + chr3_3:2710983-2711002 Msa0438460:three_prime_UTR 45.0%
! TGTGTGTTTGGGAAGGCTTT+TGG - chr3_3:2711019-2711038 None:intergenic 45.0%
!! AAATAATGATAAAAATATAT+AGG - chr3_3:2710547-2710566 None:intergenic 5.0%
!! AAATAATGATAAAAATATAT+AGG - chr3_3:2710547-2710566 None:intergenic 5.0%
AAACCTGGTGGAATAGGTCC+AGG - chr3_3:2709752-2709771 None:intergenic 50.0%
CTGGCTAAACCTGGTGGAAT+AGG - chr3_3:2709758-2709777 None:intergenic 50.0%
TTCCACCAGGTTTAGCCAGA+AGG + chr3_3:2709759-2709778 Msa0438460:CDS 50.0%
! TACCTTCTGGCTAAACCTGG+TGG - chr3_3:2709764-2709783 None:intergenic 50.0%
TCCATTATGCCTCCTCATGG+TGG + chr3_3:2710012-2710031 Msa0438460:CDS 50.0%
! TCCACCATGAGGAGGCATAA+TGG - chr3_3:2710016-2710035 None:intergenic 50.0%
! CCGTGAAGTATTCCACCATG+AGG - chr3_3:2710027-2710046 None:intergenic 50.0%
GGTCGCCCATAATCTAGCAA+AGG + chr3_3:2710170-2710189 Msa0438460:intron 50.0%
CGCCCATAATCTAGCAAAGG+CGG + chr3_3:2710173-2710192 Msa0438460:intron 50.0%
GGCCGCCTTTGCTAGATTAT+GGG - chr3_3:2710178-2710197 None:intergenic 50.0%
TGGCCGCCTTTGCTAGATTA+TGG - chr3_3:2710179-2710198 None:intergenic 50.0%
GGGTAGCGTGAATTGTGCAT+TGG + chr3_3:2710976-2710995 Msa0438460:three_prime_UTR 50.0%
AAACCTGGTGGAATAGGTCC+AGG - chr3_3:2709752-2709771 None:intergenic 50.0%
CTGGCTAAACCTGGTGGAAT+AGG - chr3_3:2709758-2709777 None:intergenic 50.0%
TTCCACCAGGTTTAGCCAGA+AGG + chr3_3:2709759-2709778 Msa0438460:CDS 50.0%
! TACCTTCTGGCTAAACCTGG+TGG - chr3_3:2709764-2709783 None:intergenic 50.0%
TCCATTATGCCTCCTCATGG+TGG + chr3_3:2710012-2710031 Msa0438460:CDS 50.0%
! TCCACCATGAGGAGGCATAA+TGG - chr3_3:2710016-2710035 None:intergenic 50.0%
! CCGTGAAGTATTCCACCATG+AGG - chr3_3:2710027-2710046 None:intergenic 50.0%
GGTCGCCCATAATCTAGCAA+AGG + chr3_3:2710170-2710189 Msa0438460:intron 50.0%
CGCCCATAATCTAGCAAAGG+CGG + chr3_3:2710173-2710192 Msa0438460:intron 50.0%
GGCCGCCTTTGCTAGATTAT+GGG - chr3_3:2710178-2710197 None:intergenic 50.0%
TGGCCGCCTTTGCTAGATTA+TGG - chr3_3:2710179-2710198 None:intergenic 50.0%
GGGTAGCGTGAATTGTGCAT+TGG + chr3_3:2710976-2710995 Msa0438460:three_prime_UTR 50.0%
GGTCCAGGCCAAGTTTGAGA+AGG - chr3_3:2709737-2709756 None:intergenic 55.0%
GGGGCATGCCATACCAATCA+TGG - chr3_3:2710052-2710071 None:intergenic 55.0%
GGTCCAGGCCAAGTTTGAGA+AGG - chr3_3:2709737-2709756 None:intergenic 55.0%
GGGGCATGCCATACCAATCA+TGG - chr3_3:2710052-2710071 None:intergenic 55.0%
TGGCCTGGACCTATTCCACC+AGG + chr3_3:2709746-2709765 Msa0438460:CDS 60.0%
TGGCCTGGACCTATTCCACC+AGG + chr3_3:2709746-2709765 Msa0438460:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 2709297 2711123 2709297 ID=Msa0438460;Name=Msa0438460
chr3_3 mRNA 2709297 2711123 2709297 ID=Msa0438460-mRNA-1;Parent=Msa0438460;Name=Msa0438460-mRNA-1;_AED=0.11;_eAED=0.11;_QI=245|1|1|1|1|1|4|270|234
chr3_3 exon 2709297 2709780 2709297 ID=Msa0438460-mRNA-1:exon:640;Parent=Msa0438460-mRNA-1
chr3_3 exon 2709900 2710057 2709900 ID=Msa0438460-mRNA-1:exon:641;Parent=Msa0438460-mRNA-1
chr3_3 exon 2710350 2710486 2710350 ID=Msa0438460-mRNA-1:exon:642;Parent=Msa0438460-mRNA-1
chr3_3 exon 2710683 2711123 2710683 ID=Msa0438460-mRNA-1:exon:643;Parent=Msa0438460-mRNA-1
chr3_3 five_prime_UTR 2709297 2709541 2709297 ID=Msa0438460-mRNA-1:five_prime_utr;Parent=Msa0438460-mRNA-1
chr3_3 CDS 2709542 2709780 2709542 ID=Msa0438460-mRNA-1:cds;Parent=Msa0438460-mRNA-1
chr3_3 CDS 2709900 2710057 2709900 ID=Msa0438460-mRNA-1:cds;Parent=Msa0438460-mRNA-1
chr3_3 CDS 2710350 2710486 2710350 ID=Msa0438460-mRNA-1:cds;Parent=Msa0438460-mRNA-1
chr3_3 CDS 2710683 2710853 2710683 ID=Msa0438460-mRNA-1:cds;Parent=Msa0438460-mRNA-1
chr3_3 three_prime_UTR 2710854 2711123 2710854 ID=Msa0438460-mRNA-1:three_prime_utr;Parent=Msa0438460-mRNA-1
Gene Sequence

>Msa0438460

ATGGAGAGTAAAAATTCAAAAGAGATAATTGATATAGAGAAACTTCCAGATCATGTGATTATAGAGGTATTCATAAGAACAGAAGTGAGTGATTGGGCACAAATATCATGTGTGAAGAAGCAGTGGGCTTCCCTTTTCCGAACCGAATGTTTCTGGCAAGCTGCTCTTTCTCACATCTATCCATTCACCAATCCTTCTCAAACTTGGCCTGGACCTATTCCACCAGGTTTAGCCAGAAGAAGGTTCATGGCCTTACATATAAGTCAACAAATATTTGCTTCTGATCCTGATATACAAGTGGATGAGATTGTTGGGCATAGTTATCTGTTTTTGAAAGAGCAGCTTCAACTTTCCATTATGCCTCCTCATGGTGGAATACTTCACGGAACCATGATTGATCAGTTTATTGCCAATGGCAAGTCAAGAGACGTAGCCCATGAACTTGTATCTCGAATCTGGCTTGCTGTTCTTGACAATTTGGAAGAAAATCAGCATACCTTTTGCTTACTTAAACGCCTTGCACATGAAGGAGATCAGGTTTTTCTTCCATATCCTTACACTAGATCAGTCAAAGTTCAATGGAGGGTGTTTGAGAAGCTTTTTACTGATTTCCGTGATTGCTTCAACCATGTAGATTATTATGATATGTTGGCATGTGCTAAAAGTAGGTTTCAGCCAATACCATCTGCTTGGTTAGGTTATTAG

Protein sequence

>Msa0438460

MESKNSKEIIDIEKLPDHVIIEVFIRTEVSDWAQISCVKKQWASLFRTECFWQAALSHIYPFTNPSQTWPGPIPPGLARRRFMALHISQQIFASDPDIQVDEIVGHSYLFLKEQLQLSIMPPHGGILHGTMIDQFIANGKSRDVAHELVSRIWLAVLDNLEENQHTFCLLKRLAHEGDQVFLPYPYTRSVKVQWRVFEKLFTDFRDCFNHVDYYDMLACAKSRFQPIPSAWLGY*