AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0638500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0638500 MtrunA17_Chr4g0049821 94.472 398 17 2 1 393 1 398 0.0 752
Msa0638500 MtrunA17_Chr7g0241071 41.404 413 205 12 1 380 1 409 6.93e-92 282
Msa0638500 MtrunA17_Chr2g0278581 42.122 311 155 7 82 378 32 331 9.82e-75 236
Msa0638500 MtrunA17_Chr6g0463901 40.909 308 165 6 82 379 32 332 4.01e-73 231
Msa0638500 MtrunA17_Chr3g0113101 26.148 283 170 12 119 386 120 378 1.08e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0638500 AT5G64380.1 76.389 360 74 3 40 393 50 404 0.0 561
Msa0638500 AT3G54050.2 46.417 321 152 6 79 380 96 415 4.96e-91 280
Msa0638500 AT3G54050.1 46.417 321 152 6 79 380 96 415 4.96e-91 280
Msa0638500 AT1G43670.1 41.956 317 167 7 82 388 32 341 1.43e-78 246
Msa0638500 AT3G55800.1 27.273 286 169 14 119 389 127 388 1.76e-14 74.7

Find 97 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGCATTACCTTTGGCTC+TGG 0.272844 4_3:-34015071 Msa0638500:CDS
TCCCTATCAGAACCACTATT+TGG 0.303466 4_3:+34016619 None:intergenic
AGTCTTTGGTGCAGTTTAAC+TGG 0.327999 4_3:+34014095 None:intergenic
ATTCACTCCAAAGTGGAAAT+AGG 0.331263 4_3:-34015136 Msa0638500:CDS
CTCCATCGAACTTTGTTGTA+TGG 0.346740 4_3:-34014242 Msa0638500:CDS
TACCTTGCAGAGTACTTCTT+AGG 0.348324 4_3:+34014287 None:intergenic
ATATATTTCCTTAAGCCTTC+AGG 0.350818 4_3:+34014341 None:intergenic
GTAAAACCACTATCAGTCTT+AGG 0.354058 4_3:-34016829 Msa0638500:CDS
GTAGGTAAAGGAGGTGGAAT+TGG 0.362077 4_3:-34016742 Msa0638500:CDS
GGTTGGAAAGTTTGAAGCTT+TGG 0.362731 4_3:+34016901 None:intergenic
TTGATTGGCCTGAAGGCTTA+AGG 0.371460 4_3:-34014349 Msa0638500:CDS
CTTGTTACTGAAGCCATTGT+TGG 0.385235 4_3:+34016853 None:intergenic
AATTGGTGTGAATGATGATT+TGG 0.387215 4_3:-34016725 Msa0638500:CDS
TTCACTCTCGACCGTTCAAC+AGG 0.404800 4_3:-34015038 Msa0638500:CDS
ATGGAAGAGTTGGAAAGTTA+TGG 0.406247 4_3:-34014044 Msa0638500:CDS
ACCATTGATATGCCAAATAG+TGG 0.413324 4_3:-34016631 Msa0638500:CDS
CTATCAGCCTATTTCCACTT+TGG 0.418294 4_3:+34015129 None:intergenic
AAAAGTAAATCCTGGTTATG+AGG 0.419122 4_3:-34014009 Msa0638500:CDS
GGATCTGTCACGACCACATA+TGG 0.420264 4_3:+34015272 None:intergenic
GAAGGTGATGAGTTGATAGA+AGG 0.422120 4_3:+34016927 None:intergenic
CATTTATGTGTTTACATCCA+TGG 0.425485 4_3:+34013819 None:intergenic
GATATAATATCAAGAGGCTT+TGG 0.431354 4_3:+34016592 None:intergenic
GGAAATAGGCTGATAGCTTC+TGG 0.433737 4_3:-34015122 Msa0638500:CDS
TCCATCGAACTTTGTTGTAT+GGG 0.439545 4_3:-34014241 Msa0638500:CDS
TGCCAAATAGTGGTTCTGAT+AGG 0.439936 4_3:-34016621 Msa0638500:CDS
AAAGCCTCTTGATATTATAT+CGG 0.440217 4_3:-34016590 Msa0638500:intron
ACTATACTCTGCATTACCTT+TGG 0.441406 4_3:-34015077 Msa0638500:CDS
TTTGAAAGACATGGAAGAGT+TGG 0.444010 4_3:-34014054 Msa0638500:CDS
AAATATATTAACACAAATGA+TGG 0.448892 4_3:+34013885 None:intergenic
AACATAGTTACAAATAAGTT+AGG 0.449299 4_3:+34013940 None:intergenic
CCATTGTTGGAGTGAAGAAA+AGG 0.457793 4_3:+34016866 None:intergenic
ATCTGGAAAAGTTGCTGTCA+TGG 0.460073 4_3:-34015339 Msa0638500:CDS
ATTAACACAAATGATGGATA+AGG 0.461953 4_3:+34013891 None:intergenic
TCAACAGTAGCAAGTGATGA+TGG 0.462555 4_3:-34016787 Msa0638500:CDS
CCATCGAACTTTGTTGTATG+GGG 0.479077 4_3:-34014240 Msa0638500:CDS
ATTGATGCATCCATACCAAC+TGG 0.487257 4_3:-34015230 Msa0638500:CDS
CTTCATAAACAAGACGAAGA+TGG 0.490062 4_3:+34014195 None:intergenic
TCTGCATTACCTTTGGCTCT+GGG 0.492545 4_3:-34015070 Msa0638500:CDS
GAAAACATTCTGATGAAACT+TGG 0.497865 4_3:-34016990 Msa0638500:five_prime_UTR
GAAAATTGTACCAGTTGGTA+TGG 0.498000 4_3:+34015220 None:intergenic
GCCAAATAGTGGTTCTGATA+GGG 0.510565 4_3:-34016620 Msa0638500:CDS
GTGGAGCAAGCTGGTGGGAG+AGG 0.519722 4_3:-34014152 Msa0638500:CDS
AGTTTGAAGCTTTGGTCGGA+AGG 0.522108 4_3:+34016909 None:intergenic
TGATGGGTCTGTTACATTGA+TGG 0.523388 4_3:-34016770 Msa0638500:CDS
GAAGTACCTAAGACTGATAG+TGG 0.526082 4_3:+34016823 None:intergenic
ACCACTATTTGGCATATCAA+TGG 0.526712 4_3:+34016630 None:intergenic
TAATCTGCCCACAGAGGAGA+AGG 0.532639 4_3:-34015168 Msa0638500:CDS
TGCTCCACGATGAAACTAAG+AGG 0.534585 4_3:+34014167 None:intergenic
TTGATGGAGTATGTAGGTAA+AGG 0.537527 4_3:-34016754 Msa0638500:CDS
ATGGAGTATGTAGGTAAAGG+AGG 0.539783 4_3:-34016751 Msa0638500:CDS
AGCAAAGCCTTCTCCTCTGT+GGG 0.541176 4_3:+34015161 None:intergenic
GAGTATGTAGGTAAAGGAGG+TGG 0.541348 4_3:-34016748 Msa0638500:CDS
CCAACTTGGATAAGTGATGA+TGG 0.545731 4_3:-34015296 Msa0638500:CDS
CATTGTTGGAGTGAAGAAAA+GGG 0.551735 4_3:+34016867 None:intergenic
GTTGGAGTGAAGAAAAGGGT+TGG 0.561218 4_3:+34016871 None:intergenic
GGAGATGGTTATTTAGACCA+TGG 0.564024 4_3:-34013836 Msa0638500:three_prime_UTR
CGGTATTTATAAACGCCTTG+AGG 0.565322 4_3:-34015198 Msa0638500:CDS
AGTTTCATCGTGGAGCAAGC+TGG 0.566038 4_3:-34014161 Msa0638500:CDS
CCATCATCACTTATCCAAGT+TGG 0.566146 4_3:+34015296 None:intergenic
AAGAAAATGATACACCAACT+TGG 0.571987 4_3:-34015310 Msa0638500:CDS
GGGGTGTGGCGATGAATCCG+AGG 0.573022 4_3:-34014220 Msa0638500:CDS
AAATAAGTTAGGAAACATGA+AGG 0.578210 4_3:+34013951 None:intergenic
CAACAGTAGCAAGTGATGAT+GGG 0.579069 4_3:-34016786 Msa0638500:CDS
GATACTGTGAGACAAGGAAA+AGG 0.580838 4_3:-34014317 Msa0638500:CDS
TTGCTGAATTCACTCCAAAG+TGG 0.581831 4_3:-34015143 Msa0638500:CDS
TTTAGGGAGTTTGAAAGACA+TGG 0.583051 4_3:-34014063 Msa0638500:CDS
GTTACATTGATGGAGTATGT+AGG 0.584657 4_3:-34016760 Msa0638500:CDS
CAGCAAAGCCTTCTCCTCTG+TGG 0.586371 4_3:+34015160 None:intergenic
TGCATGTGTCCCAGAGCCAA+AGG 0.587943 4_3:+34015061 None:intergenic
CCCCATACAACAAAGTTCGA+TGG 0.588449 4_3:+34014240 None:intergenic
ATATCAATGGTATAATTGAA+AGG 0.591706 4_3:+34016643 None:intergenic
TTCATCGTGGAGCAAGCTGG+TGG 0.592470 4_3:-34014158 Msa0638500:CDS
GGAAAGTTTGAAGCTTTGGT+CGG 0.593641 4_3:+34016905 None:intergenic
AAGGTGATGAGTTGATAGAA+GGG 0.593820 4_3:+34016928 None:intergenic
ATCCTAAGAAGTACTCTGCA+AGG 0.594963 4_3:-34014289 Msa0638500:CDS
GTCGTGACAGATCCCCTCGA+TGG 0.599505 4_3:-34015263 Msa0638500:CDS
ATACCGAAAATTGTACCAGT+TGG 0.603945 4_3:+34015215 None:intergenic
CATCGAACTTTGTTGTATGG+GGG 0.606647 4_3:-34014239 Msa0638500:CDS
TGCTACTGTTGATGAAGATG+AGG 0.607320 4_3:+34016798 None:intergenic
CACACCGATATAATATCAAG+AGG 0.613129 4_3:+34016586 None:intergenic
GGGTGTGGCGATGAATCCGA+GGG 0.615240 4_3:-34014219 Msa0638500:CDS
TAGCATCAAACCTCATAACC+AGG 0.619050 4_3:+34013999 None:intergenic
GCAGATTATCTAGCTCCTCA+AGG 0.619596 4_3:+34015183 None:intergenic
AATATTTCGAGAACCATCGA+GGG 0.619869 4_3:+34015250 None:intergenic
ACAAGACGAAGATGGTCCCT+CGG 0.621507 4_3:+34014203 None:intergenic
GCTCCACGATGAAACTAAGA+GGG 0.623232 4_3:+34014168 None:intergenic
GAATGAAGTCTCCTGTTGAA+CGG 0.631390 4_3:+34015027 None:intergenic
GCTGGTGGGAGAGGATCCGA+TGG 0.631525 4_3:-34014143 Msa0638500:CDS
AAGTGATGATGGTCCATATG+TGG 0.632479 4_3:-34015285 Msa0638500:CDS
TCATCGTGGAGCAAGCTGGT+GGG 0.634727 4_3:-34014157 Msa0638500:CDS
CAATATTTCGAGAACCATCG+AGG 0.656931 4_3:+34015249 None:intergenic
AGCATTAAAATTCCTCCCCG+TGG 0.680772 4_3:-34014993 Msa0638500:intron
TATATTGATACTGTGAGACA+AGG 0.681648 4_3:-34014323 Msa0638500:CDS
GCTAGATAATCTGCCCACAG+AGG 0.689544 4_3:-34015174 Msa0638500:CDS
GTGCATATGTTACCACGGGG+AGG 0.701876 4_3:+34014981 None:intergenic
ATATTTCGAGAACCATCGAG+GGG 0.721395 4_3:+34015251 None:intergenic
AAACCCTCTTAGTTTCATCG+TGG 0.730924 4_3:-34014171 Msa0638500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATACAATATTTTTATATT+TGG + chr4_3:34014767-34014786 None:intergenic 10.0%
!! TATAAAATATCTATCAAATT+AGG + chr4_3:34015920-34015939 None:intergenic 10.0%
!!! ATAAAAAACACTTTAAAAGT+CGG - chr4_3:34014575-34014594 Msa0638500:intron 15.0%
!! TTTCTATTAGGTTTAAATAT+CGG + chr4_3:34014864-34014883 None:intergenic 15.0%
!! ACATTAATGCTTATAATTTA+AGG - chr4_3:34016038-34016057 Msa0638500:intron 15.0%
!! TATAAAAATAAACTGAAAAC+AGG - chr4_3:34016236-34016255 Msa0638500:intron 15.0%
!! AAATATATTAACACAAATGA+TGG + chr4_3:34016945-34016964 None:intergenic 15.0%
!!! GAATGTTTTCATTTTCATTT+GGG + chr4_3:34013827-34013846 None:intergenic 20.0%
!!! AGAATGTTTTCATTTTCATT+TGG + chr4_3:34013828-34013847 None:intergenic 20.0%
!! ATATCAATGGTATAATTGAA+AGG + chr4_3:34014187-34014206 None:intergenic 20.0%
!! AACTCAATATAGCATAAATT+AGG - chr4_3:34014551-34014570 Msa0638500:intron 20.0%
!! TATTAGAAAATAAGTCATCT+AGG - chr4_3:34014717-34014736 Msa0638500:intron 20.0%
!! TTCTATTAGGTTTAAATATC+GGG + chr4_3:34014863-34014882 None:intergenic 20.0%
!!! TTCAAAATTTTGAGAATTGA+GGG - chr4_3:34014935-34014954 Msa0638500:intron 20.0%
!! GTTCTATTAATGTTGTTAAA+TGG - chr4_3:34015215-34015234 Msa0638500:CDS 20.0%
!! TAACAAAACCCTTTATTAAA+AGG - chr4_3:34015388-34015407 Msa0638500:intron 20.0%
!!! CTCTTTTTCCTTTTAATAAA+GGG + chr4_3:34015399-34015418 None:intergenic 20.0%
!!! TCTCTTTTTCCTTTTAATAA+AGG + chr4_3:34015400-34015419 None:intergenic 20.0%
!!! TTGATAATATAACAGAAGAT+AGG + chr4_3:34015946-34015965 None:intergenic 20.0%
!! TCTGTTATATTATCAAATGT+TGG - chr4_3:34015950-34015969 Msa0638500:intron 20.0%
!! TTAAGCTATTTATCAAGAAA+GGG + chr4_3:34016064-34016083 None:intergenic 20.0%
!!! TTTATTTTTATAAGCTCTTC+AGG + chr4_3:34016228-34016247 None:intergenic 20.0%
!! AACATAGTTACAAATAAGTT+AGG + chr4_3:34016890-34016909 None:intergenic 20.0%
! AAAGCCTCTTGATATTATAT+CGG - chr4_3:34014237-34014256 Msa0638500:CDS 25.0%
! AAAAAAATCATCCAAACTCA+TGG + chr4_3:34014287-34014306 None:intergenic 25.0%
!! TTTGTGTGTTGTTGTTAATT+GGG - chr4_3:34014356-34014375 Msa0638500:CDS 25.0%
! GTAAGTTATATGAAAACACA+AGG + chr4_3:34014896-34014915 None:intergenic 25.0%
!!! CTTCAAAATTTTGAGAATTG+AGG - chr4_3:34014934-34014953 Msa0638500:intron 25.0%
!! TTACATTAATTTTCGATGAG+TGG + chr4_3:34015005-34015024 None:intergenic 25.0%
! TTCTACAACTTAGATATAAG+GGG + chr4_3:34015032-34015051 None:intergenic 25.0%
! GTTCTACAACTTAGATATAA+GGG + chr4_3:34015033-34015052 None:intergenic 25.0%
! TGTTCTACAACTTAGATATA+AGG + chr4_3:34015034-34015053 None:intergenic 25.0%
!! GTTTGTCATAATGGAAATAT+AGG + chr4_3:34015194-34015213 None:intergenic 25.0%
! AATAGAACAGTTTGTCATAA+TGG + chr4_3:34015203-34015222 None:intergenic 25.0%
!!! AATGTTGTTAAATGGATTGT+TGG - chr4_3:34015223-34015242 Msa0638500:CDS 25.0%
!!! ATGTTGTTAAATGGATTGTT+GGG - chr4_3:34015224-34015243 Msa0638500:CDS 25.0%
!! TTTTGATCTTATGTCAGAAT+TGG - chr4_3:34015254-34015273 Msa0638500:CDS 25.0%
!!! TCAGTAATGGGTTTAAAAAT+AGG + chr4_3:34015281-34015300 None:intergenic 25.0%
!! TAAGGCTAATTTTCTTTCAT+TGG - chr4_3:34015985-34016004 Msa0638500:intron 25.0%
! GTTAAGCTATTTATCAAGAA+AGG + chr4_3:34016065-34016084 None:intergenic 25.0%
!!! ATGATGCAAGATATTTTGAT+TGG - chr4_3:34016463-34016482 Msa0638500:intron 25.0%
! AAATAAGTTAGGAAACATGA+AGG + chr4_3:34016879-34016898 None:intergenic 25.0%
!!! ATTAACACAAATGATGGATA+AGG + chr4_3:34016939-34016958 None:intergenic 25.0%
!!! TCTTCACTTTTGTTTTTCTT+GGG - chr4_3:34016970-34016989 Msa0638500:exon 25.0%
GAAAACATTCTGATGAAACT+TGG - chr4_3:34013837-34013856 Msa0638500:three_prime_UTR 30.0%
! AAGAAAAGGGTTGGAATTTT+TGG + chr4_3:34013950-34013969 None:intergenic 30.0%
AATTGGTGTGAATGATGATT+TGG - chr4_3:34014102-34014121 Msa0638500:CDS 30.0%
GATATAATATCAAGAGGCTT+TGG + chr4_3:34014238-34014257 None:intergenic 30.0%
TCTATTGAATTCCATGAGTT+TGG - chr4_3:34014273-34014292 Msa0638500:CDS 30.0%
!! TTTTCCCTTTTTGATTGTCT+TGG - chr4_3:34014306-34014325 Msa0638500:CDS 30.0%
CTAACCAAGACAATCAAAAA+GGG + chr4_3:34014313-34014332 None:intergenic 30.0%
ACTAACCAAGACAATCAAAA+AGG + chr4_3:34014314-34014333 None:intergenic 30.0%
! GTTTGTGTGTTGTTGTTAAT+TGG - chr4_3:34014355-34014374 Msa0638500:CDS 30.0%
ATTGGGAATCATGACAAAAT+CGG - chr4_3:34014373-34014392 Msa0638500:CDS 30.0%
AAATCGGTGGTTGAAAATAT+TGG - chr4_3:34014389-34014408 Msa0638500:intron 30.0%
AATCGGTGGTTGAAAATATT+GGG - chr4_3:34014390-34014409 Msa0638500:intron 30.0%
CTCTTAAGAAGAAGAATAAG+TGG - chr4_3:34014459-34014478 Msa0638500:intron 30.0%
TTGTTACAAAGGTAATTTGG+TGG + chr4_3:34014657-34014676 None:intergenic 30.0%
!! AGCTTGTTACAAAGGTAATT+TGG + chr4_3:34014660-34014679 None:intergenic 30.0%
AAATTACCTTTGTAACAAGC+TGG - chr4_3:34014659-34014678 Msa0638500:intron 30.0%
AGAAAATAAGTCATCTAGGT+CGG - chr4_3:34014721-34014740 Msa0638500:intron 30.0%
! AGGATGACTCATTTTCTATT+AGG + chr4_3:34014876-34014895 None:intergenic 30.0%
!! TCAAAATTTTGAAGACCCTT+GGG + chr4_3:34014928-34014947 None:intergenic 30.0%
CTCTAACATAAGAGTTTCTA+AGG + chr4_3:34015107-34015126 None:intergenic 30.0%
TAGTATGGTACATCAGTAAT+GGG + chr4_3:34015293-34015312 None:intergenic 30.0%
CTAGCCATTATGTATGTAAA+AGG - chr4_3:34015347-34015366 Msa0638500:CDS 30.0%
! ACAGCCTTTTACATACATAA+TGG + chr4_3:34015354-34015373 None:intergenic 30.0%
TTTCATTCTGCAATAATGCA+TGG + chr4_3:34015446-34015465 None:intergenic 30.0%
TTGTCATCACTTCAAAAATC+TGG - chr4_3:34015471-34015490 Msa0638500:intron 30.0%
AAGAAAATGATACACCAACT+TGG - chr4_3:34015517-34015536 Msa0638500:intron 30.0%
! ATACCAACTGGTACAATTTT+CGG - chr4_3:34015609-34015628 Msa0638500:intron 30.0%
TTAAAGTGCATATGTTACCA+CGG + chr4_3:34015854-34015873 None:intergenic 30.0%
AATAAACTGAAAACAGGCTA+TGG - chr4_3:34016242-34016261 Msa0638500:intron 30.0%
TTTCCACTGAAAACAACTTA+TGG - chr4_3:34016279-34016298 Msa0638500:intron 30.0%
AAACTGTTTGGTTGAGTTTA+TGG + chr4_3:34016323-34016342 None:intergenic 30.0%
CAGTCAACAACATAAACTTA+GGG + chr4_3:34016404-34016423 None:intergenic 30.0%
ATATATTTCCTTAAGCCTTC+AGG + chr4_3:34016489-34016508 None:intergenic 30.0%
TATATTGATACTGTGAGACA+AGG - chr4_3:34016504-34016523 Msa0638500:intron 30.0%
!!! AAGAATCCTACTTTTTCCAT+CGG + chr4_3:34016703-34016722 None:intergenic 30.0%
! AAAGACTTCCTCTCTTTTTA+GGG - chr4_3:34016748-34016767 Msa0638500:CDS 30.0%
GTACAACAAAAAGTAAATCC+TGG - chr4_3:34016810-34016829 Msa0638500:CDS 30.0%
AAAAGTAAATCCTGGTTATG+AGG - chr4_3:34016818-34016837 Msa0638500:CDS 30.0%
!!! CTCTTCACTTTTGTTTTTCT+TGG - chr4_3:34016969-34016988 Msa0638500:exon 30.0%
CATTTATGTGTTTACATCCA+TGG + chr4_3:34017011-34017030 None:intergenic 30.0%
!! AAGGTGATGAGTTGATAGAA+GGG + chr4_3:34013902-34013921 None:intergenic 35.0%
!!! AAAGGGTTGGAATTTTTGGT+TGG + chr4_3:34013946-34013965 None:intergenic 35.0%
CATTGTTGGAGTGAAGAAAA+GGG + chr4_3:34013963-34013982 None:intergenic 35.0%
GTAAAACCACTATCAGTCTT+AGG - chr4_3:34013998-34014017 Msa0638500:exon 35.0%
GTTACATTGATGGAGTATGT+AGG - chr4_3:34014067-34014086 Msa0638500:CDS 35.0%
TTGATGGAGTATGTAGGTAA+AGG - chr4_3:34014073-34014092 Msa0638500:CDS 35.0%
ACCATTGATATGCCAAATAG+TGG - chr4_3:34014196-34014215 Msa0638500:CDS 35.0%
ACCACTATTTGGCATATCAA+TGG + chr4_3:34014200-34014219 None:intergenic 35.0%
CACACCGATATAATATCAAG+AGG + chr4_3:34014244-34014263 None:intergenic 35.0%
! TTTTTGTCAAGTAGCCACAA+TGG - chr4_3:34014427-34014446 Msa0638500:intron 35.0%
!! AAGAGAATTTCTAGCCATTG+TGG + chr4_3:34014444-34014463 None:intergenic 35.0%
TGGGTAGGAACATATATACA+GGG + chr4_3:34014507-34014526 None:intergenic 35.0%
!! ACAAAACCAGCTTGTTACAA+AGG + chr4_3:34014668-34014687 None:intergenic 35.0%
TGGCCTAATTCAACTATACA+AGG + chr4_3:34014747-34014766 None:intergenic 35.0%
!! CAAAATTTTGAAGACCCTTG+GGG + chr4_3:34014927-34014946 None:intergenic 35.0%
!! CTCAAAATTTTGAAGACCCT+TGG + chr4_3:34014929-34014948 None:intergenic 35.0%
ACTGATGCACAGATAGAAAT+AGG + chr4_3:34014978-34014997 None:intergenic 35.0%
CTTATGTTAGAGTGTGTTGA+AGG - chr4_3:34015115-34015134 Msa0638500:CDS 35.0%
CTAGTATGGTACATCAGTAA+TGG + chr4_3:34015294-34015313 None:intergenic 35.0%
GTCAACATTCAAGACTAGTA+TGG + chr4_3:34015308-34015327 None:intergenic 35.0%
ATTCTGCAATAATGCATGGT+GGG + chr4_3:34015442-34015461 None:intergenic 35.0%
AATATTTCGAGAACCATCGA+GGG + chr4_3:34015580-34015599 None:intergenic 35.0%
! GAAAATTGTACCAGTTGGTA+TGG + chr4_3:34015610-34015629 None:intergenic 35.0%
ATACCGAAAATTGTACCAGT+TGG + chr4_3:34015615-34015634 None:intergenic 35.0%
ATTCACTCCAAAGTGGAAAT+AGG - chr4_3:34015691-34015710 Msa0638500:intron 35.0%
ACTATACTCTGCATTACCTT+TGG - chr4_3:34015750-34015769 Msa0638500:intron 35.0%
TAAAGTGCATATGTTACCAC+GGG + chr4_3:34015853-34015872 None:intergenic 35.0%
!! TGTTGGAAGCATCTTACATA+AGG - chr4_3:34015967-34015986 Msa0638500:intron 35.0%
!! AGTCCATAAGTTGTTTTCAG+TGG + chr4_3:34016285-34016304 None:intergenic 35.0%
TTGTGAGTTGTGAAACTGTT+TGG + chr4_3:34016335-34016354 None:intergenic 35.0%
CTCACAAATGTTCATGTCTA+CGG - chr4_3:34016348-34016367 Msa0638500:intron 35.0%
CATAAACTTAGGGACTGTAT+AGG + chr4_3:34016394-34016413 None:intergenic 35.0%
GCAGTCAACAACATAAACTT+AGG + chr4_3:34016405-34016424 None:intergenic 35.0%
!!! AGATATTTTGATTGGCCTGA+AGG - chr4_3:34016471-34016490 Msa0638500:intron 35.0%
! TCCATCGAACTTTGTTGTAT+GGG - chr4_3:34016586-34016605 Msa0638500:intron 35.0%
CTTCATAAACAAGACGAAGA+TGG + chr4_3:34016635-34016654 None:intergenic 35.0%
CTAAAAAGAGAGGAAGTCTT+TGG + chr4_3:34016749-34016768 None:intergenic 35.0%
! CAAAGACTTCCTCTCTTTTT+AGG - chr4_3:34016747-34016766 Msa0638500:CDS 35.0%
TTCAAACTCCCTAAAAAGAG+AGG + chr4_3:34016759-34016778 None:intergenic 35.0%
TTTAGGGAGTTTGAAAGACA+TGG - chr4_3:34016764-34016783 Msa0638500:CDS 35.0%
TTTGAAAGACATGGAAGAGT+TGG - chr4_3:34016773-34016792 Msa0638500:CDS 35.0%
ATGGAAGAGTTGGAAAGTTA+TGG - chr4_3:34016783-34016802 Msa0638500:CDS 35.0%
!!! CTTTTGTTTTTCTTGGGAGA+TGG - chr4_3:34016976-34016995 Msa0638500:five_prime_UTR 35.0%
!! GAAGGTGATGAGTTGATAGA+AGG + chr4_3:34013903-34013922 None:intergenic 40.0%
! GGAAAGTTTGAAGCTTTGGT+CGG + chr4_3:34013925-34013944 None:intergenic 40.0%
! GGTTGGAAAGTTTGAAGCTT+TGG + chr4_3:34013929-34013948 None:intergenic 40.0%
CCATTGTTGGAGTGAAGAAA+AGG + chr4_3:34013964-34013983 None:intergenic 40.0%
! CCTTTTCTTCACTCCAACAA+TGG - chr4_3:34013961-34013980 Msa0638500:three_prime_UTR 40.0%
CTTGTTACTGAAGCCATTGT+TGG + chr4_3:34013977-34013996 None:intergenic 40.0%
! GAAGTACCTAAGACTGATAG+TGG + chr4_3:34014007-34014026 None:intergenic 40.0%
! TGCTACTGTTGATGAAGATG+AGG + chr4_3:34014032-34014051 None:intergenic 40.0%
TCAACAGTAGCAAGTGATGA+TGG - chr4_3:34014040-34014059 Msa0638500:CDS 40.0%
CAACAGTAGCAAGTGATGAT+GGG - chr4_3:34014041-34014060 Msa0638500:CDS 40.0%
! TGATGGGTCTGTTACATTGA+TGG - chr4_3:34014057-34014076 Msa0638500:CDS 40.0%
ATGGAGTATGTAGGTAAAGG+AGG - chr4_3:34014076-34014095 Msa0638500:CDS 40.0%
!! TGCCAAATAGTGGTTCTGAT+AGG - chr4_3:34014206-34014225 Msa0638500:CDS 40.0%
!! GCCAAATAGTGGTTCTGATA+GGG - chr4_3:34014207-34014226 Msa0638500:CDS 40.0%
TCCCTATCAGAACCACTATT+TGG + chr4_3:34014211-34014230 None:intergenic 40.0%
AGAAGAATAAGTGGTGTGTC+AGG - chr4_3:34014468-34014487 Msa0638500:intron 40.0%
GAAGAATAAGTGGTGTGTCA+GGG - chr4_3:34014469-34014488 Msa0638500:intron 40.0%
GGGTAGGAACATATATACAG+GGG + chr4_3:34014506-34014525 None:intergenic 40.0%
GTGGGTAGGAACATATATAC+AGG + chr4_3:34014508-34014527 None:intergenic 40.0%
!!! ACAAGCTGGTTTTGTAGAGA+TGG - chr4_3:34014673-34014692 Msa0638500:intron 40.0%
!!! CAAGCTGGTTTTGTAGAGAT+GGG - chr4_3:34014674-34014693 Msa0638500:intron 40.0%
! CGGCCTTGTATAGTTGAATT+AGG - chr4_3:34014741-34014760 Msa0638500:intron 40.0%
ACTTTGTTGGATGACTCGAA+TGG + chr4_3:34014801-34014820 None:intergenic 40.0%
AGTGACGAGTATCACTTTGT+TGG + chr4_3:34014814-34014833 None:intergenic 40.0%
ATACTCGTCACTCTACGAAT+TGG - chr4_3:34014822-34014841 Msa0638500:intron 40.0%
AACTTACCAATTAAGCCCCA+AGG - chr4_3:34014909-34014928 Msa0638500:intron 40.0%
ACTTACCAATTAAGCCCCAA+GGG - chr4_3:34014910-34014929 Msa0638500:intron 40.0%
TTCTGCAATAATGCATGGTG+GGG + chr4_3:34015441-34015460 None:intergenic 40.0%
CATTCTGCAATAATGCATGG+TGG + chr4_3:34015443-34015462 None:intergenic 40.0%
ATCTGGAAAAGTTGCTGTCA+TGG - chr4_3:34015488-34015507 Msa0638500:intron 40.0%
CCATCATCACTTATCCAAGT+TGG + chr4_3:34015534-34015553 None:intergenic 40.0%
CCAACTTGGATAAGTGATGA+TGG - chr4_3:34015531-34015550 Msa0638500:intron 40.0%
!! AAGTGATGATGGTCCATATG+TGG - chr4_3:34015542-34015561 Msa0638500:intron 40.0%
ATATTTCGAGAACCATCGAG+GGG + chr4_3:34015579-34015598 None:intergenic 40.0%
CAATATTTCGAGAACCATCG+AGG + chr4_3:34015581-34015600 None:intergenic 40.0%
ATTGATGCATCCATACCAAC+TGG - chr4_3:34015597-34015616 Msa0638500:intron 40.0%
CGGTATTTATAAACGCCTTG+AGG - chr4_3:34015629-34015648 Msa0638500:intron 40.0%
TTGCTGAATTCACTCCAAAG+TGG - chr4_3:34015684-34015703 Msa0638500:intron 40.0%
CTATCAGCCTATTTCCACTT+TGG + chr4_3:34015701-34015720 None:intergenic 40.0%
GAATGAAGTCTCCTGTTGAA+CGG + chr4_3:34015803-34015822 None:intergenic 40.0%
AAAGTGCATATGTTACCACG+GGG + chr4_3:34015852-34015871 None:intergenic 40.0%
AACTTAGGGACTGTATAGGA+TGG + chr4_3:34016390-34016409 None:intergenic 40.0%
!!! CTCTCTTGTTTTGTCACTCA+GGG - chr4_3:34016424-34016443 Msa0638500:intron 40.0%
GATACTGTGAGACAAGGAAA+AGG - chr4_3:34016510-34016529 Msa0638500:intron 40.0%
!! ATCCTAAGAAGTACTCTGCA+AGG - chr4_3:34016538-34016557 Msa0638500:intron 40.0%
! TACCTTGCAGAGTACTTCTT+AGG + chr4_3:34016543-34016562 None:intergenic 40.0%
! CTCCATCGAACTTTGTTGTA+TGG - chr4_3:34016585-34016604 Msa0638500:intron 40.0%
! CCATCGAACTTTGTTGTATG+GGG - chr4_3:34016587-34016606 Msa0638500:intron 40.0%
! CATCGAACTTTGTTGTATGG+GGG - chr4_3:34016588-34016607 Msa0638500:intron 40.0%
AAACCCTCTTAGTTTCATCG+TGG - chr4_3:34016656-34016675 Msa0638500:CDS 40.0%
! AGTCTTTGGTGCAGTTTAAC+TGG + chr4_3:34016735-34016754 None:intergenic 40.0%
TAGCATCAAACCTCATAACC+AGG + chr4_3:34016831-34016850 None:intergenic 40.0%
GGAGATGGTTATTTAGACCA+TGG - chr4_3:34016991-34017010 Msa0638500:five_prime_UTR 40.0%
! AGTTTGAAGCTTTGGTCGGA+AGG + chr4_3:34013921-34013940 None:intergenic 45.0%
GTTGGAGTGAAGAAAAGGGT+TGG + chr4_3:34013959-34013978 None:intergenic 45.0%
GAGTATGTAGGTAAAGGAGG+TGG - chr4_3:34014079-34014098 Msa0638500:CDS 45.0%
GTAGGTAAAGGAGGTGGAAT+TGG - chr4_3:34014085-34014104 Msa0638500:CDS 45.0%
GGGAATCATGACAAAATCGG+TGG - chr4_3:34014376-34014395 Msa0638500:CDS 45.0%
CGTCACTCTACGAATTGGTT+TGG - chr4_3:34014827-34014846 Msa0638500:intron 45.0%
! GCAGATTATCTAGCTCCTCA+AGG + chr4_3:34015647-34015666 None:intergenic 45.0%
GGAAATAGGCTGATAGCTTC+TGG - chr4_3:34015705-34015724 Msa0638500:intron 45.0%
!! TCTGCATTACCTTTGGCTCT+GGG - chr4_3:34015757-34015776 Msa0638500:intron 45.0%
!! CGGGGAGGAATTTTAATGCT+TGG + chr4_3:34015834-34015853 None:intergenic 45.0%
AGCATTAAAATTCCTCCCCG+TGG - chr4_3:34015834-34015853 Msa0638500:intron 45.0%
!!! GCTCTCTTGTTTTGTCACTC+AGG - chr4_3:34016423-34016442 Msa0638500:intron 45.0%
!! TTGATTGGCCTGAAGGCTTA+AGG - chr4_3:34016478-34016497 Msa0638500:intron 45.0%
CCCCATACAACAAAGTTCGA+TGG + chr4_3:34016590-34016609 None:intergenic 45.0%
! AACTTTGTTGTATGGGGGTG+TGG - chr4_3:34016593-34016612 Msa0638500:CDS 45.0%
GCTCCACGATGAAACTAAGA+GGG + chr4_3:34016662-34016681 None:intergenic 45.0%
TGCTCCACGATGAAACTAAG+AGG + chr4_3:34016663-34016682 None:intergenic 45.0%
GAGGATCCGATGGAAAAAGT+AGG - chr4_3:34016694-34016713 Msa0638500:CDS 45.0%
TACCCACTGAGCTAAGCTCA+CGG - chr4_3:34014521-34014540 Msa0638500:intron 50.0%
GAAGACCCTTGGGGCTTAAT+TGG + chr4_3:34014918-34014937 None:intergenic 50.0%
GGATCTGTCACGACCACATA+TGG + chr4_3:34015558-34015577 None:intergenic 50.0%
GCTAGATAATCTGCCCACAG+AGG - chr4_3:34015653-34015672 Msa0638500:intron 50.0%
TAATCTGCCCACAGAGGAGA+AGG - chr4_3:34015659-34015678 Msa0638500:intron 50.0%
AGCAAAGCCTTCTCCTCTGT+GGG + chr4_3:34015669-34015688 None:intergenic 50.0%
! CTCTGCATTACCTTTGGCTC+TGG - chr4_3:34015756-34015775 Msa0638500:intron 50.0%
TTCACTCTCGACCGTTCAAC+AGG - chr4_3:34015789-34015808 Msa0638500:intron 50.0%
ACAAGACGAAGATGGTCCCT+CGG + chr4_3:34016627-34016646 None:intergenic 50.0%
AGTTTCATCGTGGAGCAAGC+TGG - chr4_3:34016666-34016685 Msa0638500:CDS 50.0%
GGTGTGTCAGGGTTCGAACT+CGG - chr4_3:34014480-34014499 Msa0638500:intron 55.0%
GTGAGCTTAGCTCAGTGGGT+AGG + chr4_3:34014522-34014541 None:intergenic 55.0%
ACCCACTGAGCTAAGCTCAC+GGG - chr4_3:34014522-34014541 Msa0638500:intron 55.0%
CAGCAAAGCCTTCTCCTCTG+TGG + chr4_3:34015670-34015689 None:intergenic 55.0%
TGCATGTGTCCCAGAGCCAA+AGG + chr4_3:34015769-34015788 None:intergenic 55.0%
GTGCATATGTTACCACGGGG+AGG + chr4_3:34015849-34015868 None:intergenic 55.0%
TTCATCGTGGAGCAAGCTGG+TGG - chr4_3:34016669-34016688 Msa0638500:CDS 55.0%
TCATCGTGGAGCAAGCTGGT+GGG - chr4_3:34016670-34016689 Msa0638500:CDS 55.0%
CCCCGTGAGCTTAGCTCAGT+GGG + chr4_3:34014526-34014545 None:intergenic 60.0%
CCCACTGAGCTAAGCTCACG+GGG - chr4_3:34014523-34014542 Msa0638500:intron 60.0%
TCCCCGTGAGCTTAGCTCAG+TGG + chr4_3:34014527-34014546 None:intergenic 60.0%
GTCGTGACAGATCCCCTCGA+TGG - chr4_3:34015564-34015583 Msa0638500:intron 60.0%
GGGTGTGGCGATGAATCCGA+GGG - chr4_3:34016608-34016627 Msa0638500:CDS 60.0%
GGGGTGTGGCGATGAATCCG+AGG - chr4_3:34016607-34016626 Msa0638500:CDS 65.0%
GTGGAGCAAGCTGGTGGGAG+AGG - chr4_3:34016675-34016694 Msa0638500:CDS 65.0%
GCTGGTGGGAGAGGATCCGA+TGG - chr4_3:34016684-34016703 Msa0638500:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 34013803 34017046 34013803 ID=Msa0638500;Name=Msa0638500
chr4_3 mRNA 34013803 34017046 34013803 ID=Msa0638500-mRNA-1;Parent=Msa0638500;Name=Msa0638500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=72|1|1|1|1|1|3|201|393
chr4_3 exon 34013803 34014404 34013803 ID=Msa0638500-mRNA-1:exon:7734;Parent=Msa0638500-mRNA-1
chr4_3 exon 34014994 34015390 34014994 ID=Msa0638500-mRNA-1:exon:7733;Parent=Msa0638500-mRNA-1
chr4_3 exon 34016591 34017046 34016591 ID=Msa0638500-mRNA-1:exon:7732;Parent=Msa0638500-mRNA-1
chr4_3 five_prime_UTR 34016975 34017046 34016975 ID=Msa0638500-mRNA-1:five_prime_utr;Parent=Msa0638500-mRNA-1
chr4_3 CDS 34016591 34016974 34016591 ID=Msa0638500-mRNA-1:cds;Parent=Msa0638500-mRNA-1
chr4_3 CDS 34014994 34015390 34014994 ID=Msa0638500-mRNA-1:cds;Parent=Msa0638500-mRNA-1
chr4_3 CDS 34014004 34014404 34014004 ID=Msa0638500-mRNA-1:cds;Parent=Msa0638500-mRNA-1
chr4_3 three_prime_UTR 34013803 34014003 34013803 ID=Msa0638500-mRNA-1:three_prime_utr;Parent=Msa0638500-mRNA-1
Gene Sequence

>Msa0638500

ATGCAGTCAGCAGCAACAACAACACCCTTCTATCAACTCATCACCTTCCGACCAAAGCTTCAAACTTTCCAACCAAAAATTCCAACCCTTTTCTTCACTCCAACAATGGCTTCAGTAACAAGAGTAAAACCACTATCAGTCTTAGGTACTTCTTCCTCATCTTCATCAACAGTAGCAAGTGATGATGGGTCTGTTACATTGATGGAGTATGTAGGTAAAGGAGGTGGAATTGGTGTGAATGATGATTTGGTGATTTTGATTGATCATATACAGTATGCTTGTAAGAGAATTGCAGCTCTTATAGCTTCTCCTTTCAATTATACCATTGATATGCCAAATAGTGGTTCTGATAGGGATGCTCCAAAGCCTCTTGATATTATATCGAATGAAATTATCTTGTCATCACTTCAAAAATCTGGAAAAGTTGCTGTCATGGCTTCTGAAGAAAATGATACACCAACTTGGATAAGTGATGATGGTCCATATGTGGTCGTGACAGATCCCCTCGATGGTTCTCGAAATATTGATGCATCCATACCAACTGGTACAATTTTCGGTATTTATAAACGCCTTGAGGAGCTAGATAATCTGCCCACAGAGGAGAAGGCTTTGCTGAATTCACTCCAAAGTGGAAATAGGCTGATAGCTTCTGGTTATGTTCTTTATTCATCTGCAACTATACTCTGCATTACCTTTGGCTCTGGGACACATGCATTCACTCTCGACCGTTCAACAGGAGACTTCATTCTGACAAATCCAAGCATTAAAATTCCTCCCCGTGGGCAAATATATTCTGTGAATGATGCAAGATATTTTGATTGGCCTGAAGGCTTAAGGAAATATATTGATACTGTGAGACAAGGAAAAGGTAGATATCCTAAGAAGTACTCTGCAAGGTATATATGCTCTCTAGTAGCTGATCTCCATCGAACTTTGTTGTATGGGGGTGTGGCGATGAATCCGAGGGACCATCTTCGTCTTGTTTATGAAGCAAACCCTCTTAGTTTCATCGTGGAGCAAGCTGGTGGGAGAGGATCCGATGGAAAAAGTAGGATTCTTTCTCTTCAACCAGTTAAACTGCACCAAAGACTTCCTCTCTTTTTAGGGAGTTTGAAAGACATGGAAGAGTTGGAAAGTTATGGAGACGTACAACAAAAAGTAAATCCTGGTTATGAGGTTTGA

Protein sequence

>Msa0638500

MQSAATTTPFYQLITFRPKLQTFQPKIPTLFFTPTMASVTRVKPLSVLGTSSSSSSTVASDDGSVTLMEYVGKGGGIGVNDDLVILIDHIQYACKRIAALIASPFNYTIDMPNSGSDRDAPKPLDIISNEIILSSLQKSGKVAVMASEENDTPTWISDDGPYVVVTDPLDGSRNIDASIPTGTIFGIYKRLEELDNLPTEEKALLNSLQSGNRLIASGYVLYSSATILCITFGSGTHAFTLDRSTGDFILTNPSIKIPPRGQIYSVNDARYFDWPEGLRKYIDTVRQGKGRYPKKYSARYICSLVADLHRTLLYGGVAMNPRDHLRLVYEANPLSFIVEQAGGRGSDGKSRILSLQPVKLHQRLPLFLGSLKDMEELESYGDVQQKVNPGYEV*