AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524830 MtrunA17_Chr3g0137971 93.353 331 15 2 1 325 1 330 0.0 567
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524830 AT5G11270.1 48.659 261 126 1 66 318 91 351 5.80e-67 214

Find 62 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAATACGAGAACATTT+TGG 0.252301 3_4:-78383397 None:intergenic
GAATCTCCGGGCGTAGTTTC+AGG 0.263805 3_4:-78381866 None:intergenic
GGTGATACTGCTGATGGTTT+AGG 0.275225 3_4:-78381845 None:intergenic
TGAATGCTGATGGTGATTAT+TGG 0.310496 3_4:+78383315 Msa0524830:three_prime_UTR
CACCAGCCTTGATCACGCTT+GGG 0.331948 3_4:+78383261 Msa0524830:three_prime_UTR
TTCTCGAAAGAGATTGAAAA+AGG 0.338696 3_4:+78381982 Msa0524830:CDS
GATCATGCTCATGCAGAATC+TGG 0.343580 3_4:+78381911 Msa0524830:CDS
GCTTGGGGTTGAGTTATATA+AGG 0.343854 3_4:+78383277 Msa0524830:three_prime_UTR
TTCCTCTGACTGTGACTAAA+CGG 0.395790 3_4:-78379878 None:intergenic
TTCGCTGCAAAGAAGAGGAT+TGG 0.420945 3_4:-78379902 None:intergenic
GCTGATGGTTTAGGTTCATC+AGG 0.425177 3_4:-78381836 None:intergenic
TTCATGACATGCAACAGAAT+TGG 0.427701 3_4:+78381957 Msa0524830:CDS
CTCAACCCCAAGCGTGATCA+AGG 0.446457 3_4:-78383267 None:intergenic
TCACCAGCCTTGATCACGCT+TGG 0.449052 3_4:+78383260 Msa0524830:three_prime_UTR
CGCGGAGAACAGTTATTAAG+TGG 0.452000 3_4:+78383082 Msa0524830:CDS
TCGCTGCAAAGAAGAGGATT+GGG 0.456309 3_4:-78379901 None:intergenic
AAATACTTACACTTAGTTTG+CGG 0.456482 3_4:-78380478 None:intergenic
TTGGCTAGAGCATTGAAAAC+TGG 0.457333 3_4:+78380452 Msa0524830:CDS
TTCTGTTGCATGTCATGAAT+AGG 0.457484 3_4:-78381953 None:intergenic
ATAGGTAAGTTAGACTTCTT+CGG 0.466152 3_4:-78381935 None:intergenic
TCCTCTGACTGTGACTAAAC+GGG 0.466238 3_4:-78379877 None:intergenic
CGCGAGTTGGAAGGTGTGTT+GGG 0.475506 3_4:+78380305 Msa0524830:CDS
TCATTAGCAGACTGCTGGTA+AGG 0.483094 3_4:-78383150 None:intergenic
TTGTTTCATTAGCAGACTGC+TGG 0.483884 3_4:-78383155 None:intergenic
TGTTTGAAAAGCAACTCAAA+TGG 0.492775 3_4:-78380185 None:intergenic
ATTCGCTGAAGCTTAGAACT+TGG 0.492933 3_4:+78380417 Msa0524830:CDS
ACCCCAAGCGTGATCAAGGC+TGG 0.508368 3_4:-78383263 None:intergenic
AACTTGGCAATTGAATGCAT+TGG 0.512705 3_4:+78380433 Msa0524830:CDS
CTCAGCATCAGAAGACTTGG+TGG 0.517452 3_4:-78381803 None:intergenic
AGCTCTATCAAGACAGAGCT+CGG 0.525713 3_4:-78381753 None:intergenic
AGAGCGAGAAGGAAGAGTGA+AGG 0.528288 3_4:-78379940 None:intergenic
AGAGTGAAGGAGAAGAGAAG+AGG 0.540225 3_4:-78379927 None:intergenic
AGACAAACGTGCCGAGGAGG+GGG 0.542683 3_4:+78383110 Msa0524830:CDS
ACGCGAGTTGGAAGGTGTGT+TGG 0.544033 3_4:+78380304 Msa0524830:CDS
ACCAGCCTTGATCACGCTTG+GGG 0.548676 3_4:+78383262 Msa0524830:three_prime_UTR
GTTTCAGGTGATACTGCTGA+TGG 0.555775 3_4:-78381851 None:intergenic
AGGCTCAGCATCAGAAGACT+TGG 0.557597 3_4:-78381806 None:intergenic
TGCTTTGTTAGAACGCGAGT+TGG 0.559551 3_4:+78380292 Msa0524830:CDS
CGGTGACAATTGAAGAGTAG+AGG 0.560168 3_4:-78379968 None:intergenic
TGGTAAGGAAGACGATGCTC+TGG 0.560826 3_4:-78383135 None:intergenic
TTGTTAGAACGCGAGTTGGA+AGG 0.564648 3_4:+78380296 Msa0524830:CDS
AAATTGACTCATGTTACAGA+GGG 0.567201 3_4:+78380146 Msa0524830:CDS
AGCATCAGAAGACTTGGTGG+AGG 0.576518 3_4:-78381800 None:intergenic
TAGGTTCATCAGGAATCGAT+AGG 0.584575 3_4:-78381826 None:intergenic
GTATCACCTGAAACTACGCC+CGG 0.589871 3_4:+78381860 Msa0524830:CDS
GAAGACAAACGTGCCGAGGA+GGG 0.595141 3_4:+78383108 Msa0524830:CDS
AAAGGCTCAACTTGACACGC+TGG 0.611700 3_4:+78382000 Msa0524830:CDS
TGAAGACAAACGTGCCGAGG+AGG 0.619168 3_4:+78383107 Msa0524830:CDS
AAGACAAACGTGCCGAGGAG+GGG 0.620622 3_4:+78383109 Msa0524830:CDS
GAAGTACTGCTGAATGCTGA+TGG 0.624828 3_4:+78383305 Msa0524830:three_prime_UTR
TGCATGTTTCAAACATTCCG+CGG 0.630435 3_4:+78383064 Msa0524830:CDS
ACCCGTTTAGTCACAGTCAG+AGG 0.634786 3_4:+78379876 Msa0524830:CDS
AAAATTGACTCATGTTACAG+AGG 0.638213 3_4:+78380145 Msa0524830:CDS
GCATCAGAAGACTTGGTGGA+GGG 0.649310 3_4:-78381799 None:intergenic
GTTTGAAGACAAACGTGCCG+AGG 0.651860 3_4:+78383104 Msa0524830:CDS
TGATAAACACTGATTCGCGA+CGG 0.673675 3_4:-78379850 None:intergenic
TGTTACAGAGGGGAATGACG+AGG 0.686418 3_4:+78380157 Msa0524830:CDS
TACAGAGGGGAATGACGAGG+AGG 0.700089 3_4:+78380160 Msa0524830:CDS
ACAGATATCAGCGAAACACA+AGG 0.708447 3_4:+78380353 Msa0524830:CDS
CACTTAATAACTGTTCTCCG+CGG 0.713242 3_4:-78383081 None:intergenic
GAGTTTACATGAGATCAAAG+CGG 0.731573 3_4:+78382026 Msa0524830:CDS
AATTGACTCATGTTACAGAG+GGG 0.739510 3_4:+78380147 Msa0524830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGCATAGAATAATAAATT+AGG - chr3_4:78380100-78380119 None:intergenic 15.0%
!! CTAAAAATACAAAATTCAAA+AGG - chr3_4:78380762-78380781 None:intergenic 15.0%
!! AATTAAACTCAAAACAAATT+AGG - chr3_4:78380785-78380804 None:intergenic 15.0%
!! AATTTAATAGTGAGATTTAT+TGG - chr3_4:78382749-78382768 None:intergenic 15.0%
!! TTCCAAAAAGAAAAACAATA+AGG + chr3_4:78379995-78380014 Msa0524830:CDS 20.0%
!!! AACCTTATTGTTTTTCTTTT+TGG - chr3_4:78380000-78380019 None:intergenic 20.0%
!! TATGAATCATTGAATTGTAT+TGG - chr3_4:78380066-78380085 None:intergenic 20.0%
!! TTAATTCATATATACAACGT+TGG - chr3_4:78380866-78380885 None:intergenic 20.0%
!! GAATAAAAAGTTTAAGCAAA+TGG - chr3_4:78381120-78381139 None:intergenic 20.0%
!! TTTATATTAAGAATCTCAGA+TGG + chr3_4:78381524-78381543 Msa0524830:intron 20.0%
!! TTCTTTATAAAAAGAATCTC+CGG - chr3_4:78381882-78381901 None:intergenic 20.0%
!!! AAGATTTTACTAGTTATGTA+TGG - chr3_4:78382169-78382188 None:intergenic 20.0%
!! ACATTTGATATATTTAGCAT+CGG + chr3_4:78382555-78382574 Msa0524830:intron 20.0%
!!! TTTTTGAGGAATTTGATAAT+TGG - chr3_4:78383354-78383373 None:intergenic 20.0%
!!! ATTGTTTTTCTTTTTGGAAG+AGG - chr3_4:78379994-78380013 None:intergenic 25.0%
! AATTGTATTGGATTTGGATT+TGG - chr3_4:78380054-78380073 None:intergenic 25.0%
! TCATTGAATTGTATTGGATT+TGG - chr3_4:78380060-78380079 None:intergenic 25.0%
! AATGATGTAGAAAAAAGTAG+TGG + chr3_4:78380380-78380399 Msa0524830:CDS 25.0%
!! AAATACTTACACTTAGTTTG+CGG - chr3_4:78380481-78380500 None:intergenic 25.0%
! CTTAGTAGGATATATATACA+AGG + chr3_4:78380571-78380590 Msa0524830:intron 25.0%
!!! GTGTATATAGCTTTGATTTA+GGG - chr3_4:78380668-78380687 None:intergenic 25.0%
!!! AGTGTATATAGCTTTGATTT+AGG - chr3_4:78380669-78380688 None:intergenic 25.0%
! AAATCAAAGCTATATACACT+TGG + chr3_4:78380669-78380688 Msa0524830:intron 25.0%
! ATGTCTGTGATATTAATTAG+AGG + chr3_4:78380695-78380714 Msa0524830:intron 25.0%
! AATTCAAAAGGCTTACTATT+TGG - chr3_4:78380750-78380769 None:intergenic 25.0%
! ATATATACAACGTTGGTATT+TGG - chr3_4:78380859-78380878 None:intergenic 25.0%
! ATGATATGAATAGGATTACT+TGG + chr3_4:78380963-78380982 Msa0524830:intron 25.0%
! AATGTTAGTAGTTAGTTAGT+TGG + chr3_4:78381251-78381270 Msa0524830:intron 25.0%
! TAGTATATTTGCCTTTAATC+AGG - chr3_4:78381420-78381439 None:intergenic 25.0%
!! CTAGTTGATATATTAAAGAG+TGG + chr3_4:78381437-78381456 Msa0524830:intron 25.0%
! TCTTTATAAAAAGAATCTCC+GGG - chr3_4:78381881-78381900 None:intergenic 25.0%
! AAACTTGTGATATTGAAGTA+TGG - chr3_4:78382072-78382091 None:intergenic 25.0%
!! CTTCAATATCACAAGTTTTA+TGG + chr3_4:78382074-78382093 Msa0524830:intron 25.0%
! AAACTTGTGATATTGAAGTA+TGG - chr3_4:78382072-78382091 None:intergenic 25.0%
!! CTTCAATATCACAAGTTTTA+TGG + chr3_4:78382074-78382093 Msa0524830:intron 25.0%
! ACATAACTTCTGATTTAAGA+GGG - chr3_4:78382256-78382275 None:intergenic 25.0%
! AACATAACTTCTGATTTAAG+AGG - chr3_4:78382257-78382276 None:intergenic 25.0%
!! GTGACTTTTTAATCTAATGA+TGG + chr3_4:78382783-78382802 Msa0524830:intron 25.0%
! AATAGAATATATGCACAAAG+AGG - chr3_4:78382862-78382881 None:intergenic 25.0%
! AGTTAACAAGTTGTGAAATA+AGG - chr3_4:78382984-78383003 None:intergenic 25.0%
!! TTTGGTATTTGACATTTTAG+CGG - chr3_4:78383382-78383401 None:intergenic 25.0%
!! AAATGAATACGAGAACATTT+TGG - chr3_4:78383400-78383419 None:intergenic 25.0%
! ATTGGATTTGGATTTGGAAT+TGG - chr3_4:78380048-78380067 None:intergenic 30.0%
! AAAATTGACTCATGTTACAG+AGG + chr3_4:78380145-78380164 Msa0524830:CDS 30.0%
! AAATTGACTCATGTTACAGA+GGG + chr3_4:78380146-78380165 Msa0524830:CDS 30.0%
TGTTTGAAAAGCAACTCAAA+TGG - chr3_4:78380188-78380207 None:intergenic 30.0%
GCAAACTAAGTGTAAGTATT+TGG + chr3_4:78380480-78380499 Msa0524830:intron 30.0%
ATCTTCAATCAACTCTGTTA+TGG - chr3_4:78380529-78380548 None:intergenic 30.0%
! ATAACAGAGTTGATTGAAGA+TGG + chr3_4:78380528-78380547 Msa0524830:intron 30.0%
!! GTGTTTCATTGATTCTTAGT+AGG + chr3_4:78380557-78380576 Msa0524830:intron 30.0%
! ATTCTGTACACATGTTTTCA+GGG - chr3_4:78380645-78380664 None:intergenic 30.0%
GTGTATCAGATGATATGAAT+AGG + chr3_4:78380954-78380973 Msa0524830:intron 30.0%
ATCATACAGGTATTTCATGT+AGG - chr3_4:78381025-78381044 None:intergenic 30.0%
AAATGCAGATCATATCATAC+AGG - chr3_4:78381038-78381057 None:intergenic 30.0%
TCTTAAACACTTGTCTTGTA+TGG - chr3_4:78381069-78381088 None:intergenic 30.0%
TTAAGAAACCAAAATGCTTG+TGG + chr3_4:78381083-78381102 Msa0524830:intron 30.0%
CCTTATCAATGAATGACAAA+AGG - chr3_4:78381194-78381213 None:intergenic 30.0%
! CCTTTTGTCATTCATTGATA+AGG + chr3_4:78381191-78381210 Msa0524830:intron 30.0%
!!! TTACTTTTTCTTGTCCCTAA+AGG - chr3_4:78381371-78381390 None:intergenic 30.0%
! ATACATCCAAGTTGAAGTTA+AGG - chr3_4:78381494-78381513 None:intergenic 30.0%
TTATCTGCAACAAATTCGAA+AGG - chr3_4:78381721-78381740 None:intergenic 30.0%
ATAGGTAAGTTAGACTTCTT+CGG - chr3_4:78381938-78381957 None:intergenic 30.0%
TTCTCGAAAGAGATTGAAAA+AGG + chr3_4:78381982-78382001 Msa0524830:CDS 30.0%
ATGGCAAGTTTAACTATGTA+TGG - chr3_4:78382111-78382130 None:intergenic 30.0%
TGATGCTTGTATTAGTATTC+TGG + chr3_4:78382295-78382314 Msa0524830:intron 30.0%
TTAACATGTATTGCAAGTCT+TGG - chr3_4:78382451-78382470 None:intergenic 30.0%
TGGACGACTTGAAAATAAAT+GGG + chr3_4:78382514-78382533 Msa0524830:intron 30.0%
AAATGGGGTAAATGTCATAT+AGG + chr3_4:78382530-78382549 Msa0524830:intron 30.0%
AATGGGGTAAATGTCATATA+GGG + chr3_4:78382531-78382550 Msa0524830:intron 30.0%
!! AGTGAGATTTATTGGTTCAA+TGG - chr3_4:78382741-78382760 None:intergenic 30.0%
AATGCTATAATATGCAGTGA+TGG - chr3_4:78382910-78382929 None:intergenic 30.0%
!!! TTTTAGCGGACTATTTTTTG+AGG - chr3_4:78383368-78383387 None:intergenic 30.0%
!! GTTTTTCTTTTTGGAAGAGG+CGG - chr3_4:78379991-78380010 None:intergenic 35.0%
! AATTGACTCATGTTACAGAG+GGG + chr3_4:78380147-78380166 Msa0524830:CDS 35.0%
AACTTGGCAATTGAATGCAT+TGG + chr3_4:78380433-78380452 Msa0524830:CDS 35.0%
! GATTCTGTACACATGTTTTC+AGG - chr3_4:78380646-78380665 None:intergenic 35.0%
TCATCTGATACACTTAGTTG+TGG - chr3_4:78380947-78380966 None:intergenic 35.0%
! TACTTGGTTTGAGTATGAAG+AGG + chr3_4:78380979-78380998 Msa0524830:intron 35.0%
! ACTGTTTTCCACAAGCATTT+TGG - chr3_4:78381094-78381113 None:intergenic 35.0%
GTCATTCATTGATAAGGAGA+AGG + chr3_4:78381197-78381216 Msa0524830:intron 35.0%
AGGAGAAGGAAAAAGTAAAC+TGG + chr3_4:78381211-78381230 Msa0524830:intron 35.0%
TAGTAGTTAGTTAGTTGGTC+AGG + chr3_4:78381256-78381275 Msa0524830:intron 35.0%
AGTAGTTAGTTAGTTGGTCA+GGG + chr3_4:78381257-78381276 Msa0524830:intron 35.0%
GGTGTTTGCAAGCAAATTAA+CGG - chr3_4:78381473-78381492 None:intergenic 35.0%
CAAACACCTTAACTTCAACT+TGG + chr3_4:78381485-78381504 Msa0524830:intron 35.0%
CAATCCCTAATGTTAACTTC+CGG + chr3_4:78381677-78381696 Msa0524830:intron 35.0%
TTCTGTTGCATGTCATGAAT+AGG - chr3_4:78381956-78381975 None:intergenic 35.0%
TTCATGACATGCAACAGAAT+TGG + chr3_4:78381957-78381976 Msa0524830:CDS 35.0%
GAGTTTACATGAGATCAAAG+CGG + chr3_4:78382026-78382045 Msa0524830:CDS 35.0%
! TGGCAAGTTTAACTTACAGT+GGG - chr3_4:78382052-78382071 None:intergenic 35.0%
! ATGGCAAGTTTAACTTACAG+TGG - chr3_4:78382053-78382072 None:intergenic 35.0%
!! TACACTCCATTTTTCTAGTC+CGG + chr3_4:78382222-78382241 Msa0524830:intron 35.0%
GCATACATGATGATACAACT+GGG - chr3_4:78382344-78382363 None:intergenic 35.0%
AGCATACATGATGATACAAC+TGG - chr3_4:78382345-78382364 None:intergenic 35.0%
GTGGACGACTTGAAAATAAA+TGG + chr3_4:78382513-78382532 Msa0524830:intron 35.0%
GGACGACTTGAAAATAAATG+GGG + chr3_4:78382515-78382534 Msa0524830:intron 35.0%
ATGGGGTAAATGTCATATAG+GGG + chr3_4:78382532-78382551 Msa0524830:intron 35.0%
! CAAAGAAGCATATAAGGTGA+TGG - chr3_4:78382656-78382675 None:intergenic 35.0%
ACCTTATATGCTTCTTTGTG+CGG + chr3_4:78382658-78382677 Msa0524830:intron 35.0%
!! GAGATTTATTGGTTCAATGG+TGG - chr3_4:78382738-78382757 None:intergenic 35.0%
! TGAATGCTGATGGTGATTAT+TGG + chr3_4:78383315-78383334 Msa0524830:three_prime_UTR 35.0%
!! TGATAAACACTGATTCGCGA+CGG - chr3_4:78379853-78379872 None:intergenic 40.0%
TTCCTCTGACTGTGACTAAA+CGG - chr3_4:78379881-78379900 None:intergenic 40.0%
ACAGATATCAGCGAAACACA+AGG + chr3_4:78380353-78380372 Msa0524830:CDS 40.0%
GTAGAAAAAAGTAGTGGCGA+TGG + chr3_4:78380386-78380405 Msa0524830:CDS 40.0%
ATTCGCTGAAGCTTAGAACT+TGG + chr3_4:78380417-78380436 Msa0524830:CDS 40.0%
!! TTGGCTAGAGCATTGAAAAC+TGG + chr3_4:78380452-78380471 Msa0524830:CDS 40.0%
GTCAATAGCATAGTTGTAGC+AGG - chr3_4:78380623-78380642 None:intergenic 40.0%
!! TCTGATTTGCTTCCTTGACT+TGG + chr3_4:78381168-78381187 Msa0524830:intron 40.0%
AATGACAAAAGGCCAAGTCA+AGG - chr3_4:78381183-78381202 None:intergenic 40.0%
GGAAAACAGGAAATGCTAGT+AGG + chr3_4:78381278-78381297 Msa0524830:intron 40.0%
AAACAGGAAATGCTAGTAGG+AGG + chr3_4:78381281-78381300 Msa0524830:intron 40.0%
AACAGGAAATGCTAGTAGGA+GGG + chr3_4:78381282-78381301 Msa0524830:intron 40.0%
CTCCTGCTTAGAACTTCTTT+GGG + chr3_4:78381319-78381338 Msa0524830:intron 40.0%
TCCTGCTTAGAACTTCTTTG+GGG + chr3_4:78381320-78381339 Msa0524830:intron 40.0%
! AGTAGTGTAGTGGTTTGGAT+TGG - chr3_4:78381348-78381367 None:intergenic 40.0%
AAAGGAGTAGTGTAGTGGTT+TGG - chr3_4:78381353-78381372 None:intergenic 40.0%
AACCACTACACTACTCCTTT+AGG + chr3_4:78381353-78381372 Msa0524830:intron 40.0%
ACCACTACACTACTCCTTTA+GGG + chr3_4:78381354-78381373 Msa0524830:intron 40.0%
GTAAACTTGATAGATCAGCC+AGG + chr3_4:78381387-78381406 Msa0524830:intron 40.0%
!! TCAGATGGATTTTCCTTGCA+AGG + chr3_4:78381539-78381558 Msa0524830:intron 40.0%
!! CAGATGGATTTTCCTTGCAA+GGG + chr3_4:78381540-78381559 Msa0524830:intron 40.0%
!! AGATGGATTTTCCTTGCAAG+GGG + chr3_4:78381541-78381560 Msa0524830:intron 40.0%
GTTCATGTGATAAAGCGAGA+AGG + chr3_4:78381590-78381609 Msa0524830:intron 40.0%
ATAAAGCGAGAAGGAAAGAG+AGG + chr3_4:78381599-78381618 Msa0524830:intron 40.0%
TAAAGCGAGAAGGAAAGAGA+GGG + chr3_4:78381600-78381619 Msa0524830:intron 40.0%
GAGTCCGGAAGTTAACATTA+GGG - chr3_4:78381684-78381703 None:intergenic 40.0%
TGAGTCCGGAAGTTAACATT+AGG - chr3_4:78381685-78381704 None:intergenic 40.0%
GTGAAACTGAGAAATGAGTC+CGG - chr3_4:78381699-78381718 None:intergenic 40.0%
TAGGTTCATCAGGAATCGAT+AGG - chr3_4:78381829-78381848 None:intergenic 40.0%
ATTTAAGAGGGAATTGCTGC+CGG - chr3_4:78382244-78382263 None:intergenic 40.0%
! ACGATATGACACTTAGCTTG+AGG - chr3_4:78382495-78382514 None:intergenic 40.0%
TCAAGCTAAGTGTCATATCG+TGG + chr3_4:78382494-78382513 Msa0524830:intron 40.0%
! AAGGTGATGGTTGACATTGT+GGG - chr3_4:78382643-78382662 None:intergenic 40.0%
! TAAGGTGATGGTTGACATTG+TGG - chr3_4:78382644-78382663 None:intergenic 40.0%
TCACTTGTGCACCATAGAAT+TGG - chr3_4:78382684-78382703 None:intergenic 40.0%
! CAAAGAGGCTTTGTCTAACA+TGG - chr3_4:78382847-78382866 None:intergenic 40.0%
AAAGTGACAAGCATGTGTCT+TGG + chr3_4:78382931-78382950 Msa0524830:intron 40.0%
TAGTTCAAGACAGACAGGTA+AGG - chr3_4:78383014-78383033 None:intergenic 40.0%
CATTGTAGTTCAAGACAGAC+AGG - chr3_4:78383019-78383038 None:intergenic 40.0%
TGCATGTTTCAAACATTCCG+CGG + chr3_4:78383064-78383083 Msa0524830:CDS 40.0%
CACTTAATAACTGTTCTCCG+CGG - chr3_4:78383084-78383103 None:intergenic 40.0%
TTGTTTCATTAGCAGACTGC+TGG - chr3_4:78383158-78383177 None:intergenic 40.0%
GCTTGGGGTTGAGTTATATA+AGG + chr3_4:78383277-78383296 Msa0524830:three_prime_UTR 40.0%
TCCTCTGACTGTGACTAAAC+GGG - chr3_4:78379880-78379899 None:intergenic 45.0%
TCGCTGCAAAGAAGAGGATT+GGG - chr3_4:78379904-78379923 None:intergenic 45.0%
TTCGCTGCAAAGAAGAGGAT+TGG - chr3_4:78379905-78379924 None:intergenic 45.0%
! AGGTTTTCGCTGCAAAGAAG+AGG - chr3_4:78379910-78379929 None:intergenic 45.0%
AGAGTGAAGGAGAAGAGAAG+AGG - chr3_4:78379930-78379949 None:intergenic 45.0%
!!! TAGAGGTTTTGAGAGCGAGA+AGG - chr3_4:78379954-78379973 None:intergenic 45.0%
CGGTGACAATTGAAGAGTAG+AGG - chr3_4:78379971-78379990 None:intergenic 45.0%
! TGCTTTGTTAGAACGCGAGT+TGG + chr3_4:78380292-78380311 Msa0524830:CDS 45.0%
! TTGTTAGAACGCGAGTTGGA+AGG + chr3_4:78380296-78380315 Msa0524830:CDS 45.0%
GTTAGTTGGTCAGGGAAAAC+AGG + chr3_4:78381265-78381284 Msa0524830:intron 45.0%
!! AGTTCTAAGCAGGAGGTCTA+GGG - chr3_4:78381314-78381333 None:intergenic 45.0%
!! AAGTTCTAAGCAGGAGGTCT+AGG - chr3_4:78381315-78381334 None:intergenic 45.0%
!! CCAAAGAAGTTCTAAGCAGG+AGG - chr3_4:78381321-78381340 None:intergenic 45.0%
CCTCCTGCTTAGAACTTCTT+TGG + chr3_4:78381318-78381337 Msa0524830:intron 45.0%
!! ACCCCAAAGAAGTTCTAAGC+AGG - chr3_4:78381324-78381343 None:intergenic 45.0%
TCCCTAAAGGAGTAGTGTAG+TGG - chr3_4:78381358-78381377 None:intergenic 45.0%
ACTTGATAGATCAGCCAGGT+TGG + chr3_4:78381391-78381410 Msa0524830:intron 45.0%
CTTGATAGATCAGCCAGGTT+GGG + chr3_4:78381392-78381411 Msa0524830:intron 45.0%
TTGATAGATCAGCCAGGTTG+GGG + chr3_4:78381393-78381412 Msa0524830:intron 45.0%
ATTGAGCAGACAACTAGCAC+AGG - chr3_4:78381661-78381680 None:intergenic 45.0%
AGCTCTATCAAGACAGAGCT+CGG - chr3_4:78381756-78381775 None:intergenic 45.0%
! GCTGATGGTTTAGGTTCATC+AGG - chr3_4:78381839-78381858 None:intergenic 45.0%
GGTGATACTGCTGATGGTTT+AGG - chr3_4:78381848-78381867 None:intergenic 45.0%
! GTTTCAGGTGATACTGCTGA+TGG - chr3_4:78381854-78381873 None:intergenic 45.0%
GATCATGCTCATGCAGAATC+TGG + chr3_4:78381911-78381930 Msa0524830:CDS 45.0%
! TTGCTGCCGGACTAGAAAAA+TGG - chr3_4:78382231-78382250 None:intergenic 45.0%
! GCCGCACAAAGAAGCATATA+AGG - chr3_4:78382662-78382681 None:intergenic 45.0%
TCTTTGTGCGGCCAATTCTA+TGG + chr3_4:78382670-78382689 Msa0524830:intron 45.0%
CGCGGAGAACAGTTATTAAG+TGG + chr3_4:78383082-78383101 Msa0524830:CDS 45.0%
TCATTAGCAGACTGCTGGTA+AGG - chr3_4:78383153-78383172 None:intergenic 45.0%
!! GAAGTACTGCTGAATGCTGA+TGG + chr3_4:78383305-78383324 Msa0524830:three_prime_UTR 45.0%
ACCCGTTTAGTCACAGTCAG+AGG + chr3_4:78379876-78379895 Msa0524830:CDS 50.0%
AGAGCGAGAAGGAAGAGTGA+AGG - chr3_4:78379943-78379962 None:intergenic 50.0%
TGTTACAGAGGGGAATGACG+AGG + chr3_4:78380157-78380176 Msa0524830:CDS 50.0%
CTTTAATCAGGACCCCAACC+TGG - chr3_4:78381408-78381427 None:intergenic 50.0%
! CAGGTTGGGGTCCTGATTAA+AGG + chr3_4:78381406-78381425 Msa0524830:intron 50.0%
TCAAACTTGCACCCCTTGCA+AGG - chr3_4:78381555-78381574 None:intergenic 50.0%
! TGCAAGGGGTGCAAGTTTGA+AGG + chr3_4:78381555-78381574 Msa0524830:intron 50.0%
!! GCATCAGAAGACTTGGTGGA+GGG - chr3_4:78381802-78381821 None:intergenic 50.0%
!! AGCATCAGAAGACTTGGTGG+AGG - chr3_4:78381803-78381822 None:intergenic 50.0%
CTCAGCATCAGAAGACTTGG+TGG - chr3_4:78381806-78381825 None:intergenic 50.0%
AGGCTCAGCATCAGAAGACT+TGG - chr3_4:78381809-78381828 None:intergenic 50.0%
GTATCACCTGAAACTACGCC+CGG + chr3_4:78381860-78381879 Msa0524830:CDS 50.0%
AAAGGCTCAACTTGACACGC+TGG + chr3_4:78382000-78382019 Msa0524830:CDS 50.0%
GTGATGGTTGACATTGTGGG+AGG - chr3_4:78382640-78382659 None:intergenic 50.0%
GTTTGAAGACAAACGTGCCG+AGG + chr3_4:78383104-78383123 Msa0524830:CDS 50.0%
TGGTAAGGAAGACGATGCTC+TGG - chr3_4:78383138-78383157 None:intergenic 50.0%
TACAGAGGGGAATGACGAGG+AGG + chr3_4:78380160-78380179 Msa0524830:CDS 55.0%
! ACGCGAGTTGGAAGGTGTGT+TGG + chr3_4:78380304-78380323 Msa0524830:CDS 55.0%
! CGCGAGTTGGAAGGTGTGTT+GGG + chr3_4:78380305-78380324 Msa0524830:CDS 55.0%
GAATCTCCGGGCGTAGTTTC+AGG - chr3_4:78381869-78381888 None:intergenic 55.0%
TGAAGACAAACGTGCCGAGG+AGG + chr3_4:78383107-78383126 Msa0524830:CDS 55.0%
GAAGACAAACGTGCCGAGGA+GGG + chr3_4:78383108-78383127 Msa0524830:CDS 55.0%
AAGACAAACGTGCCGAGGAG+GGG + chr3_4:78383109-78383128 Msa0524830:CDS 55.0%
TCACCAGCCTTGATCACGCT+TGG + chr3_4:78383260-78383279 Msa0524830:three_prime_UTR 55.0%
CACCAGCCTTGATCACGCTT+GGG + chr3_4:78383261-78383280 Msa0524830:three_prime_UTR 55.0%
ACCAGCCTTGATCACGCTTG+GGG + chr3_4:78383262-78383281 Msa0524830:three_prime_UTR 55.0%
CTCAACCCCAAGCGTGATCA+AGG - chr3_4:78383270-78383289 None:intergenic 55.0%
AGACAAACGTGCCGAGGAGG+GGG + chr3_4:78383110-78383129 Msa0524830:CDS 60.0%
!! ATGCTCTGGAACCCCCTCCT+CGG - chr3_4:78383124-78383143 None:intergenic 60.0%
ACCCCAAGCGTGATCAAGGC+TGG - chr3_4:78383266-78383285 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 78379846 78383446 78379846 ID=Msa0524830;Name=Msa0524830
chr3_4 mRNA 78379846 78383446 78379846 ID=Msa0524830-mRNA-1;Parent=Msa0524830;Name=Msa0524830-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.75|1|1|1|4|264|325
chr3_4 exon 78379846 78380016 78379846 ID=Msa0524830-mRNA-1:exon:23191;Parent=Msa0524830-mRNA-1
chr3_4 exon 78380143 78380490 78380143 ID=Msa0524830-mRNA-1:exon:23192;Parent=Msa0524830-mRNA-1
chr3_4 exon 78381737 78382054 78381737 ID=Msa0524830-mRNA-1:exon:23193;Parent=Msa0524830-mRNA-1
chr3_4 exon 78383042 78383446 78383042 ID=Msa0524830-mRNA-1:exon:23194;Parent=Msa0524830-mRNA-1
chr3_4 CDS 78379846 78380016 78379846 ID=Msa0524830-mRNA-1:cds;Parent=Msa0524830-mRNA-1
chr3_4 CDS 78380143 78380490 78380143 ID=Msa0524830-mRNA-1:cds;Parent=Msa0524830-mRNA-1
chr3_4 CDS 78381737 78382054 78381737 ID=Msa0524830-mRNA-1:cds;Parent=Msa0524830-mRNA-1
chr3_4 CDS 78383042 78383182 78383042 ID=Msa0524830-mRNA-1:cds;Parent=Msa0524830-mRNA-1
chr3_4 three_prime_UTR 78383183 78383446 78383183 ID=Msa0524830-mRNA-1:three_prime_utr;Parent=Msa0524830-mRNA-1
Gene Sequence

>Msa0524830

ATGGCCGTCGCGAATCAGTGTTTATCATATACCCGTTTAGTCACAGTCAGAGGAACCCAATCCTCTTCTTTGCAGCGAAAACCTCTTCTCTTCTCCTTCACTCTTCCTTCTCGCTCTCAAAACCTCTACTCTTCAATTGTCACCGCCTCTTCCAAAAAGAAAAACAATAAGAAAAAATTGACTCATGTTACAGAGGGGAATGACGAGGAGGATCCATTTGAGTTGCTTTTCAAACAACTCGAAGAAGATCTCAAAAACGATGATGATTTGTCAATAGAAGATAGCGATGACGACGACGACGAGATAAGTGAAGAAGATTTTGCTTTGTTAGAACGCGAGTTGGAAGGTGTGTTGGGTGAATTTGATGCTGAATTGTTGAACACAGATATCAGCGAAACACAAGGTGATAATGATGTAGAAAAAAGTAGTGGCGATGGAAATGATAATTCGCTGAAGCTTAGAACTTGGCAATTGAATGCATTGGCTAGAGCATTGAAAACTGGACGCCGCAAACTAAGTATAAAAGCTCTTGCTGCCGAGCTCTGTCTTGATAGAGCTCTTGTTCTTGATTTGCTTCGTAACCCTCCACCAAGTCTTCTGATGCTGAGCCTATCGATTCCTGATGAACCTAAACCATCAGCAGTATCACCTGAAACTACGCCCGGAGATTCTTTTTATAAAGAAACAAGTGCAGATCATGCTCATGCAGAATCTGGACCGAAGAAGTCTAACTTACCTATTCATGACATGCAACAGAATTGGTCTTCTCGAAAGAGATTGAAAAAGGCTCAACTTGACACGCTGGAGAGAGTTTACATGAGATCAAAGCGGCCCACTAATGCAATGATTAGTAATATTGTGCATGTTTCAAACATTCCGCGGAGAACAGTTATTAAGTGGTTTGAAGACAAACGTGCCGAGGAGGGGGTTCCAGAGCATCGTCTTCCTTACCAGCAGTCTGCTAATGAAACAAGTTGA

Protein sequence

>Msa0524830

MAVANQCLSYTRLVTVRGTQSSSLQRKPLLFSFTLPSRSQNLYSSIVTASSKKKNNKKKLTHVTEGNDEEDPFELLFKQLEEDLKNDDDLSIEDSDDDDDEISEEDFALLERELEGVLGEFDAELLNTDISETQGDNDVEKSSGDGNDNSLKLRTWQLNALARALKTGRRKLSIKALAAELCLDRALVLDLLRNPPPSLLMLSLSIPDEPKPSAVSPETTPGDSFYKETSADHAHAESGPKKSNLPIHDMQQNWSSRKRLKKAQLDTLERVYMRSKRPTNAMISNIVHVSNIPRRTVIKWFEDKRAEEGVPEHRLPYQQSANETS*