AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0697180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0697180 MtrunA17_Chr4g0049821 94.472 398 17 2 1 393 1 398 0.0 752
Msa0697180 MtrunA17_Chr7g0241071 41.404 413 205 12 1 380 1 409 6.93e-92 282
Msa0697180 MtrunA17_Chr2g0278581 42.122 311 155 7 82 378 32 331 9.82e-75 236
Msa0697180 MtrunA17_Chr6g0463901 40.909 308 165 6 82 379 32 332 4.01e-73 231
Msa0697180 MtrunA17_Chr3g0113101 26.148 283 170 12 119 386 120 378 1.08e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0697180 AT5G64380.1 76.389 360 74 3 40 393 50 404 0.0 561
Msa0697180 AT3G54050.2 46.417 321 152 6 79 380 96 415 4.96e-91 280
Msa0697180 AT3G54050.1 46.417 321 152 6 79 380 96 415 4.96e-91 280
Msa0697180 AT1G43670.1 41.956 317 167 7 82 388 32 341 1.43e-78 246
Msa0697180 AT3G55800.1 27.273 286 169 14 119 389 127 388 1.76e-14 74.7

Find 97 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGCATTACCTTTGGCTC+TGG 0.272844 4_4:-67160323 Msa0697180:CDS
TCCCTATCAGAACCACTATT+TGG 0.303466 4_4:+67161871 None:intergenic
AGTCTTTGGTGCAGTTTAAC+TGG 0.327999 4_4:+67159367 None:intergenic
ATTCACTCCAAAGTGGAAAT+AGG 0.331263 4_4:-67160388 Msa0697180:CDS
CTCCATCGAACTTTGTTGTA+TGG 0.346740 4_4:-67159514 Msa0697180:CDS
TACCTTGCAGAGTACTTCTT+AGG 0.348324 4_4:+67159559 None:intergenic
ATATATTTCCTTAAGCCTTC+AGG 0.350818 4_4:+67159613 None:intergenic
GTAAAACCACTATCAGTCTT+AGG 0.354058 4_4:-67162081 Msa0697180:CDS
GTAGGTAAAGGAGGTGGAAT+TGG 0.362077 4_4:-67161994 Msa0697180:CDS
GGTTGGAAAGTTTGAAGCTT+TGG 0.362731 4_4:+67162153 None:intergenic
TTGATTGGCCTGAAGGCTTA+AGG 0.371460 4_4:-67159621 Msa0697180:CDS
CTTGTTACTGAAGCCATTGT+TGG 0.385235 4_4:+67162105 None:intergenic
AATTGGTGTGAATGATGATT+TGG 0.387215 4_4:-67161977 Msa0697180:CDS
TTCACTCTCGACCGTTCAAC+AGG 0.404800 4_4:-67160290 Msa0697180:CDS
ATGGAAGAGTTGGAAAGTTA+TGG 0.406247 4_4:-67159316 Msa0697180:CDS
ACCATTGATATGCCAAATAG+TGG 0.413324 4_4:-67161883 Msa0697180:CDS
CTATCAGCCTATTTCCACTT+TGG 0.418294 4_4:+67160381 None:intergenic
AAAAGTAAATCCTGGTTATG+AGG 0.419122 4_4:-67159281 Msa0697180:CDS
GGATCTGTCACGACCACATA+TGG 0.420264 4_4:+67160524 None:intergenic
GAAGGTGATGAGTTGATAGA+AGG 0.422120 4_4:+67162179 None:intergenic
CATTTATGTGTTTACATCCA+TGG 0.425485 4_4:+67159091 None:intergenic
GATATAATATCAAGAGGCTT+TGG 0.431354 4_4:+67161844 None:intergenic
GGAAATAGGCTGATAGCTTC+TGG 0.433737 4_4:-67160374 Msa0697180:CDS
TCCATCGAACTTTGTTGTAT+GGG 0.439545 4_4:-67159513 Msa0697180:CDS
TGCCAAATAGTGGTTCTGAT+AGG 0.439936 4_4:-67161873 Msa0697180:CDS
AAAGCCTCTTGATATTATAT+CGG 0.440217 4_4:-67161842 Msa0697180:intron
ACTATACTCTGCATTACCTT+TGG 0.441406 4_4:-67160329 Msa0697180:CDS
TTTGAAAGACATGGAAGAGT+TGG 0.444010 4_4:-67159326 Msa0697180:CDS
AAATATATTAACACAAATGA+TGG 0.448892 4_4:+67159157 None:intergenic
AACATAGTTACAAATAAGTT+AGG 0.449299 4_4:+67159212 None:intergenic
CCATTGTTGGAGTGAAGAAA+AGG 0.457793 4_4:+67162118 None:intergenic
ATCTGGAAAAGTTGCTGTCA+TGG 0.460073 4_4:-67160591 Msa0697180:CDS
ATTAACACAAATGATGGATA+AGG 0.461953 4_4:+67159163 None:intergenic
TCAACAGTAGCAAGTGATGA+TGG 0.462555 4_4:-67162039 Msa0697180:CDS
CCATCGAACTTTGTTGTATG+GGG 0.479077 4_4:-67159512 Msa0697180:CDS
ATTGATGCATCCATACCAAC+TGG 0.487257 4_4:-67160482 Msa0697180:CDS
CTTCATAAACAAGACGAAGA+TGG 0.490062 4_4:+67159467 None:intergenic
TCTGCATTACCTTTGGCTCT+GGG 0.492545 4_4:-67160322 Msa0697180:CDS
GAAAACATTCTGATGAAACT+TGG 0.497865 4_4:-67162242 Msa0697180:five_prime_UTR
GAAAATTGTACCAGTTGGTA+TGG 0.498000 4_4:+67160472 None:intergenic
GCCAAATAGTGGTTCTGATA+GGG 0.510565 4_4:-67161872 Msa0697180:CDS
GTGGAGCAAGCTGGTGGGAG+AGG 0.519722 4_4:-67159424 Msa0697180:CDS
AGTTTGAAGCTTTGGTCGGA+AGG 0.522108 4_4:+67162161 None:intergenic
TGATGGGTCTGTTACATTGA+TGG 0.523388 4_4:-67162022 Msa0697180:CDS
GAAGTACCTAAGACTGATAG+TGG 0.526082 4_4:+67162075 None:intergenic
ACCACTATTTGGCATATCAA+TGG 0.526712 4_4:+67161882 None:intergenic
TAATCTGCCCACAGAGGAGA+AGG 0.532639 4_4:-67160420 Msa0697180:CDS
TGCTCCACGATGAAACTAAG+AGG 0.534585 4_4:+67159439 None:intergenic
TTGATGGAGTATGTAGGTAA+AGG 0.537527 4_4:-67162006 Msa0697180:CDS
ATGGAGTATGTAGGTAAAGG+AGG 0.539783 4_4:-67162003 Msa0697180:CDS
AGCAAAGCCTTCTCCTCTGT+GGG 0.541176 4_4:+67160413 None:intergenic
GAGTATGTAGGTAAAGGAGG+TGG 0.541348 4_4:-67162000 Msa0697180:CDS
CCAACTTGGATAAGTGATGA+TGG 0.545731 4_4:-67160548 Msa0697180:CDS
CATTGTTGGAGTGAAGAAAA+GGG 0.551735 4_4:+67162119 None:intergenic
GTTGGAGTGAAGAAAAGGGT+TGG 0.561218 4_4:+67162123 None:intergenic
GGAGATGGTTATTTAGACCA+TGG 0.564024 4_4:-67159108 Msa0697180:three_prime_UTR
CGGTATTTATAAACGCCTTG+AGG 0.565322 4_4:-67160450 Msa0697180:CDS
AGTTTCATCGTGGAGCAAGC+TGG 0.566038 4_4:-67159433 Msa0697180:CDS
CCATCATCACTTATCCAAGT+TGG 0.566146 4_4:+67160548 None:intergenic
AAGAAAATGATACACCAACT+TGG 0.571987 4_4:-67160562 Msa0697180:CDS
GGGGTGTGGCGATGAATCCG+AGG 0.573022 4_4:-67159492 Msa0697180:CDS
AAATAAGTTAGGAAACATGA+AGG 0.578210 4_4:+67159223 None:intergenic
CAACAGTAGCAAGTGATGAT+GGG 0.579069 4_4:-67162038 Msa0697180:CDS
GATACTGTGAGACAAGGAAA+AGG 0.580838 4_4:-67159589 Msa0697180:CDS
TTGCTGAATTCACTCCAAAG+TGG 0.581831 4_4:-67160395 Msa0697180:CDS
TTTAGGGAGTTTGAAAGACA+TGG 0.583051 4_4:-67159335 Msa0697180:CDS
GTTACATTGATGGAGTATGT+AGG 0.584657 4_4:-67162012 Msa0697180:CDS
CAGCAAAGCCTTCTCCTCTG+TGG 0.586371 4_4:+67160412 None:intergenic
TGCATGTGTCCCAGAGCCAA+AGG 0.587943 4_4:+67160313 None:intergenic
CCCCATACAACAAAGTTCGA+TGG 0.588449 4_4:+67159512 None:intergenic
ATATCAATGGTATAATTGAA+AGG 0.591706 4_4:+67161895 None:intergenic
TTCATCGTGGAGCAAGCTGG+TGG 0.592470 4_4:-67159430 Msa0697180:CDS
GGAAAGTTTGAAGCTTTGGT+CGG 0.593641 4_4:+67162157 None:intergenic
AAGGTGATGAGTTGATAGAA+GGG 0.593820 4_4:+67162180 None:intergenic
ATCCTAAGAAGTACTCTGCA+AGG 0.594963 4_4:-67159561 Msa0697180:CDS
GTCGTGACAGATCCCCTCGA+TGG 0.599505 4_4:-67160515 Msa0697180:CDS
ATACCGAAAATTGTACCAGT+TGG 0.603945 4_4:+67160467 None:intergenic
CATCGAACTTTGTTGTATGG+GGG 0.606647 4_4:-67159511 Msa0697180:CDS
TGCTACTGTTGATGAAGATG+AGG 0.607320 4_4:+67162050 None:intergenic
CACACCGATATAATATCAAG+AGG 0.613129 4_4:+67161838 None:intergenic
GGGTGTGGCGATGAATCCGA+GGG 0.615240 4_4:-67159491 Msa0697180:CDS
TAGCATCAAACCTCATAACC+AGG 0.619050 4_4:+67159271 None:intergenic
GCAGATTATCTAGCTCCTCA+AGG 0.619596 4_4:+67160435 None:intergenic
AATATTTCGAGAACCATCGA+GGG 0.619869 4_4:+67160502 None:intergenic
ACAAGACGAAGATGGTCCCT+CGG 0.621507 4_4:+67159475 None:intergenic
GCTCCACGATGAAACTAAGA+GGG 0.623232 4_4:+67159440 None:intergenic
GAATGAAGTCTCCTGTTGAA+CGG 0.631390 4_4:+67160279 None:intergenic
GCTGGTGGGAGAGGATCCGA+TGG 0.631525 4_4:-67159415 Msa0697180:CDS
AAGTGATGATGGTCCATATG+TGG 0.632479 4_4:-67160537 Msa0697180:CDS
TCATCGTGGAGCAAGCTGGT+GGG 0.634727 4_4:-67159429 Msa0697180:CDS
CAATATTTCGAGAACCATCG+AGG 0.656931 4_4:+67160501 None:intergenic
AGCATTAAAATTCCTCCCCG+TGG 0.680772 4_4:-67160245 Msa0697180:intron
TATATTGATACTGTGAGACA+AGG 0.681648 4_4:-67159595 Msa0697180:CDS
GCTAGATAATCTGCCCACAG+AGG 0.689544 4_4:-67160426 Msa0697180:CDS
GTGCATATGTTACCACGGGG+AGG 0.701876 4_4:+67160233 None:intergenic
ATATTTCGAGAACCATCGAG+GGG 0.721395 4_4:+67160503 None:intergenic
AAACCCTCTTAGTTTCATCG+TGG 0.730924 4_4:-67159443 Msa0697180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAACACTTTAAAAAT+CGG - chr4_4:67159847-67159866 Msa0697180:intron 10.0%
!!! CTATACAATATTTTTATATT+TGG + chr4_4:67160039-67160058 None:intergenic 10.0%
!! TATAAAATATCTATCAAATT+AGG + chr4_4:67161192-67161211 None:intergenic 10.0%
!! TTTCTATTAGGTTTAAATAT+CGG + chr4_4:67160136-67160155 None:intergenic 15.0%
!! ACATTAATGCTTATAATTTA+AGG - chr4_4:67161310-67161329 Msa0697180:intron 15.0%
!! TATAAAAATAAACTGAAAAC+AGG - chr4_4:67161488-67161507 Msa0697180:intron 15.0%
!! AAATATATTAACACAAATGA+TGG + chr4_4:67162197-67162216 None:intergenic 15.0%
!!! GAATGTTTTCATTTTCATTT+GGG + chr4_4:67159099-67159118 None:intergenic 20.0%
!!! AGAATGTTTTCATTTTCATT+TGG + chr4_4:67159100-67159119 None:intergenic 20.0%
!! ATATCAATGGTATAATTGAA+AGG + chr4_4:67159459-67159478 None:intergenic 20.0%
!! AACTCAATATAGCATAAATT+AGG - chr4_4:67159823-67159842 Msa0697180:intron 20.0%
!! TATTAGAAAATAAGTCATCT+AGG - chr4_4:67159989-67160008 Msa0697180:intron 20.0%
!! TTCTATTAGGTTTAAATATC+GGG + chr4_4:67160135-67160154 None:intergenic 20.0%
!!! TTCAAAATTTTGAGAATTGA+GGG - chr4_4:67160207-67160226 Msa0697180:intron 20.0%
!! GTTCTATTAATGTTGTTAAA+TGG - chr4_4:67160487-67160506 Msa0697180:CDS 20.0%
!! TAACAAAACCCTTTATTAAA+AGG - chr4_4:67160660-67160679 Msa0697180:intron 20.0%
!!! CTCTTTTTCCTTTTAATAAA+GGG + chr4_4:67160671-67160690 None:intergenic 20.0%
!!! TCTCTTTTTCCTTTTAATAA+AGG + chr4_4:67160672-67160691 None:intergenic 20.0%
!!! TTGATAATATAACAGAAGAT+AGG + chr4_4:67161218-67161237 None:intergenic 20.0%
!! TCTGTTATATTATCAAATGT+TGG - chr4_4:67161222-67161241 Msa0697180:intron 20.0%
!! TTAAGCTATTTATCAAGAAA+GGG + chr4_4:67161336-67161355 None:intergenic 20.0%
!!! TTTATTTTTATAAGCTCTTC+AGG + chr4_4:67161480-67161499 None:intergenic 20.0%
!! AACATAGTTACAAATAAGTT+AGG + chr4_4:67162142-67162161 None:intergenic 20.0%
! AAAGCCTCTTGATATTATAT+CGG - chr4_4:67159509-67159528 Msa0697180:CDS 25.0%
! AAAAAAATCATCCAAACTCA+TGG + chr4_4:67159559-67159578 None:intergenic 25.0%
! TTTGTGTGTAGTTGTTAATT+GGG - chr4_4:67159628-67159647 Msa0697180:CDS 25.0%
! GTAAGTTATATGAAAACACA+AGG + chr4_4:67160168-67160187 None:intergenic 25.0%
!!! CTTCAAAATTTTGAGAATTG+AGG - chr4_4:67160206-67160225 Msa0697180:intron 25.0%
!! TTACATTAATTTTCGATGAG+TGG + chr4_4:67160277-67160296 None:intergenic 25.0%
! TTCTACAACTTAGATATAAG+GGG + chr4_4:67160304-67160323 None:intergenic 25.0%
! GTTCTACAACTTAGATATAA+GGG + chr4_4:67160305-67160324 None:intergenic 25.0%
! TGTTCTACAACTTAGATATA+AGG + chr4_4:67160306-67160325 None:intergenic 25.0%
!! GTTTGTCATAATGGAAATAT+AGG + chr4_4:67160466-67160485 None:intergenic 25.0%
! AATAGAACAGTTTGTCATAA+TGG + chr4_4:67160475-67160494 None:intergenic 25.0%
!!! AATGTTGTTAAATGGATTGT+TGG - chr4_4:67160495-67160514 Msa0697180:CDS 25.0%
!!! ATGTTGTTAAATGGATTGTT+GGG - chr4_4:67160496-67160515 Msa0697180:CDS 25.0%
!! TTTTGATCTTATGTCAGAAT+TGG - chr4_4:67160526-67160545 Msa0697180:CDS 25.0%
!!! TCAGTAATGGGTTTAAAAAT+AGG + chr4_4:67160553-67160572 None:intergenic 25.0%
!! TAAGGCTAATTTTCTTTCAT+TGG - chr4_4:67161257-67161276 Msa0697180:intron 25.0%
! GTTAAGCTATTTATCAAGAA+AGG + chr4_4:67161337-67161356 None:intergenic 25.0%
!!! ATGATGCAAGATATTTTGAT+TGG - chr4_4:67161715-67161734 Msa0697180:intron 25.0%
! AAATAAGTTAGGAAACATGA+AGG + chr4_4:67162131-67162150 None:intergenic 25.0%
!!! ATTAACACAAATGATGGATA+AGG + chr4_4:67162191-67162210 None:intergenic 25.0%
!!! TCTTCACTTTTGTTTTTCTT+GGG - chr4_4:67162222-67162241 Msa0697180:exon 25.0%
GAAAACATTCTGATGAAACT+TGG - chr4_4:67159109-67159128 Msa0697180:three_prime_UTR 30.0%
! AAGAAAAGGGTTGGAATTTT+TGG + chr4_4:67159222-67159241 None:intergenic 30.0%
AATTGGTGTGAATGATGATT+TGG - chr4_4:67159374-67159393 Msa0697180:CDS 30.0%
GATATAATATCAAGAGGCTT+TGG + chr4_4:67159510-67159529 None:intergenic 30.0%
TCTATTGAATTCCATGAGTT+TGG - chr4_4:67159545-67159564 Msa0697180:CDS 30.0%
!! TTTTCCCTTTTTGATTGTCT+TGG - chr4_4:67159578-67159597 Msa0697180:CDS 30.0%
CTAACCAAGACAATCAAAAA+GGG + chr4_4:67159585-67159604 None:intergenic 30.0%
ACTAACCAAGACAATCAAAA+AGG + chr4_4:67159586-67159605 None:intergenic 30.0%
GTTTGTGTGTAGTTGTTAAT+TGG - chr4_4:67159627-67159646 Msa0697180:CDS 30.0%
ATTGGGAATCATGACAAAAT+CGG - chr4_4:67159645-67159664 Msa0697180:CDS 30.0%
AAATCGGTGGTTGAAAATAT+TGG - chr4_4:67159661-67159680 Msa0697180:intron 30.0%
AATCGGTGGTTGAAAATATT+GGG - chr4_4:67159662-67159681 Msa0697180:intron 30.0%
CTCTTAAGAAGAAGAATAAG+TGG - chr4_4:67159731-67159750 Msa0697180:intron 30.0%
TTGTTACAAAGGTAATTTGG+TGG + chr4_4:67159929-67159948 None:intergenic 30.0%
!! AGCTTGTTACAAAGGTAATT+TGG + chr4_4:67159932-67159951 None:intergenic 30.0%
AAATTACCTTTGTAACAAGC+TGG - chr4_4:67159931-67159950 Msa0697180:intron 30.0%
AGAAAATAAGTCATCTAGGT+CGG - chr4_4:67159993-67160012 Msa0697180:intron 30.0%
! AGGATGACTCATTTTCTATT+AGG + chr4_4:67160148-67160167 None:intergenic 30.0%
!! TCAAAATTTTGAAGACCCTT+GGG + chr4_4:67160200-67160219 None:intergenic 30.0%
CTCTAACATAAGAGTTTCTA+AGG + chr4_4:67160379-67160398 None:intergenic 30.0%
TAGTATGGTACATCAGTAAT+GGG + chr4_4:67160565-67160584 None:intergenic 30.0%
CTAGCCATTATGTATGTAAA+AGG - chr4_4:67160619-67160638 Msa0697180:CDS 30.0%
! ACAGCCTTTTACATACATAA+TGG + chr4_4:67160626-67160645 None:intergenic 30.0%
TTTCATTCTGCAATAATGCA+TGG + chr4_4:67160718-67160737 None:intergenic 30.0%
TTGTCATCACTTCAAAAATC+TGG - chr4_4:67160743-67160762 Msa0697180:intron 30.0%
AAGAAAATGATACACCAACT+TGG - chr4_4:67160789-67160808 Msa0697180:intron 30.0%
! ATACCAACTGGTACAATTTT+CGG - chr4_4:67160881-67160900 Msa0697180:intron 30.0%
TTAAAGTGCATATGTTACCA+CGG + chr4_4:67161126-67161145 None:intergenic 30.0%
AATAAACTGAAAACAGGCTA+TGG - chr4_4:67161494-67161513 Msa0697180:intron 30.0%
TTTCCACTGAAAACAACTTA+TGG - chr4_4:67161531-67161550 Msa0697180:intron 30.0%
AAACTGTTTGGTTGAGTTTA+TGG + chr4_4:67161575-67161594 None:intergenic 30.0%
CAGTCAACAACATAAACTTA+GGG + chr4_4:67161656-67161675 None:intergenic 30.0%
ATATATTTCCTTAAGCCTTC+AGG + chr4_4:67161741-67161760 None:intergenic 30.0%
TATATTGATACTGTGAGACA+AGG - chr4_4:67161756-67161775 Msa0697180:intron 30.0%
!!! AAGAATCCTACTTTTTCCAT+CGG + chr4_4:67161955-67161974 None:intergenic 30.0%
! AAAGACTTCCTCTCTTTTTA+GGG - chr4_4:67162000-67162019 Msa0697180:CDS 30.0%
GTACAACAAAAAGTAAATCC+TGG - chr4_4:67162062-67162081 Msa0697180:CDS 30.0%
AAAAGTAAATCCTGGTTATG+AGG - chr4_4:67162070-67162089 Msa0697180:CDS 30.0%
!!! CTCTTCACTTTTGTTTTTCT+TGG - chr4_4:67162221-67162240 Msa0697180:exon 30.0%
CATTTATGTGTTTACATCCA+TGG + chr4_4:67162263-67162282 None:intergenic 30.0%
!! AAGGTGATGAGTTGATAGAA+GGG + chr4_4:67159174-67159193 None:intergenic 35.0%
!!! AAAGGGTTGGAATTTTTGGT+TGG + chr4_4:67159218-67159237 None:intergenic 35.0%
CATTGTTGGAGTGAAGAAAA+GGG + chr4_4:67159235-67159254 None:intergenic 35.0%
GTAAAACCACTATCAGTCTT+AGG - chr4_4:67159270-67159289 Msa0697180:exon 35.0%
GTTACATTGATGGAGTATGT+AGG - chr4_4:67159339-67159358 Msa0697180:CDS 35.0%
TTGATGGAGTATGTAGGTAA+AGG - chr4_4:67159345-67159364 Msa0697180:CDS 35.0%
ACCATTGATATGCCAAATAG+TGG - chr4_4:67159468-67159487 Msa0697180:CDS 35.0%
ACCACTATTTGGCATATCAA+TGG + chr4_4:67159472-67159491 None:intergenic 35.0%
CACACCGATATAATATCAAG+AGG + chr4_4:67159516-67159535 None:intergenic 35.0%
! TTTTTGTCAAGTAGCCACAA+TGG - chr4_4:67159699-67159718 Msa0697180:intron 35.0%
!! AAGAGAATTTCTAGCCATTG+TGG + chr4_4:67159716-67159735 None:intergenic 35.0%
TGGGTAGGAACATATATACA+GGG + chr4_4:67159779-67159798 None:intergenic 35.0%
!! ACAAAACCAGCTTGTTACAA+AGG + chr4_4:67159940-67159959 None:intergenic 35.0%
TGGCCTAATTCAACTATACA+AGG + chr4_4:67160019-67160038 None:intergenic 35.0%
!! CAAAATTTTGAAGACCCTTG+GGG + chr4_4:67160199-67160218 None:intergenic 35.0%
!! CTCAAAATTTTGAAGACCCT+TGG + chr4_4:67160201-67160220 None:intergenic 35.0%
ACTGATGCACAGATAGAAAT+AGG + chr4_4:67160250-67160269 None:intergenic 35.0%
CTTATGTTAGAGTGTGTTGA+AGG - chr4_4:67160387-67160406 Msa0697180:CDS 35.0%
CTAGTATGGTACATCAGTAA+TGG + chr4_4:67160566-67160585 None:intergenic 35.0%
GTCAACATTCAAGACTAGTA+TGG + chr4_4:67160580-67160599 None:intergenic 35.0%
ATTCTGCAATAATGCATGGT+GGG + chr4_4:67160714-67160733 None:intergenic 35.0%
AATATTTCGAGAACCATCGA+GGG + chr4_4:67160852-67160871 None:intergenic 35.0%
! GAAAATTGTACCAGTTGGTA+TGG + chr4_4:67160882-67160901 None:intergenic 35.0%
ATACCGAAAATTGTACCAGT+TGG + chr4_4:67160887-67160906 None:intergenic 35.0%
ATTCACTCCAAAGTGGAAAT+AGG - chr4_4:67160963-67160982 Msa0697180:intron 35.0%
ACTATACTCTGCATTACCTT+TGG - chr4_4:67161022-67161041 Msa0697180:intron 35.0%
TAAAGTGCATATGTTACCAC+GGG + chr4_4:67161125-67161144 None:intergenic 35.0%
!! TGTTGGAAGCATCTTACATA+AGG - chr4_4:67161239-67161258 Msa0697180:intron 35.0%
!! AGTCCATAAGTTGTTTTCAG+TGG + chr4_4:67161537-67161556 None:intergenic 35.0%
TTGTGAGTTGTGAAACTGTT+TGG + chr4_4:67161587-67161606 None:intergenic 35.0%
CTCACAAATGATCATGTCTA+CGG - chr4_4:67161600-67161619 Msa0697180:intron 35.0%
CATAAACTTAGGGACTGTAT+AGG + chr4_4:67161646-67161665 None:intergenic 35.0%
GCAGTCAACAACATAAACTT+AGG + chr4_4:67161657-67161676 None:intergenic 35.0%
!!! AGATATTTTGATTGGCCTGA+AGG - chr4_4:67161723-67161742 Msa0697180:intron 35.0%
! TCCATCGAACTTTGTTGTAT+GGG - chr4_4:67161838-67161857 Msa0697180:intron 35.0%
CTTCATAAACAAGACGAAGA+TGG + chr4_4:67161887-67161906 None:intergenic 35.0%
CTAAAAAGAGAGGAAGTCTT+TGG + chr4_4:67162001-67162020 None:intergenic 35.0%
! CAAAGACTTCCTCTCTTTTT+AGG - chr4_4:67161999-67162018 Msa0697180:CDS 35.0%
TTCAAACTCCCTAAAAAGAG+AGG + chr4_4:67162011-67162030 None:intergenic 35.0%
TTTAGGGAGTTTGAAAGACA+TGG - chr4_4:67162016-67162035 Msa0697180:CDS 35.0%
TTTGAAAGACATGGAAGAGT+TGG - chr4_4:67162025-67162044 Msa0697180:CDS 35.0%
ATGGAAGAGTTGGAAAGTTA+TGG - chr4_4:67162035-67162054 Msa0697180:CDS 35.0%
!!! CTTTTGTTTTTCTTGGGAGA+TGG - chr4_4:67162228-67162247 Msa0697180:five_prime_UTR 35.0%
!! GAAGGTGATGAGTTGATAGA+AGG + chr4_4:67159175-67159194 None:intergenic 40.0%
! GGAAAGTTTGAAGCTTTGGT+CGG + chr4_4:67159197-67159216 None:intergenic 40.0%
! GGTTGGAAAGTTTGAAGCTT+TGG + chr4_4:67159201-67159220 None:intergenic 40.0%
CCATTGTTGGAGTGAAGAAA+AGG + chr4_4:67159236-67159255 None:intergenic 40.0%
! CCTTTTCTTCACTCCAACAA+TGG - chr4_4:67159233-67159252 Msa0697180:three_prime_UTR 40.0%
CTTGTTACTGAAGCCATTGT+TGG + chr4_4:67159249-67159268 None:intergenic 40.0%
! GAAGTACCTAAGACTGATAG+TGG + chr4_4:67159279-67159298 None:intergenic 40.0%
! TGCTACTGTTGATGAAGATG+AGG + chr4_4:67159304-67159323 None:intergenic 40.0%
TCAACAGTAGCAAGTGATGA+TGG - chr4_4:67159312-67159331 Msa0697180:CDS 40.0%
CAACAGTAGCAAGTGATGAT+GGG - chr4_4:67159313-67159332 Msa0697180:CDS 40.0%
! TGATGGGTCTGTTACATTGA+TGG - chr4_4:67159329-67159348 Msa0697180:CDS 40.0%
ATGGAGTATGTAGGTAAAGG+AGG - chr4_4:67159348-67159367 Msa0697180:CDS 40.0%
!! TGCCAAATAGTGGTTCTGAT+AGG - chr4_4:67159478-67159497 Msa0697180:CDS 40.0%
!! GCCAAATAGTGGTTCTGATA+GGG - chr4_4:67159479-67159498 Msa0697180:CDS 40.0%
TCCCTATCAGAACCACTATT+TGG + chr4_4:67159483-67159502 None:intergenic 40.0%
AGAAGAATAAGTGGTGTGTC+AGG - chr4_4:67159740-67159759 Msa0697180:intron 40.0%
GAAGAATAAGTGGTGTGTCA+GGG - chr4_4:67159741-67159760 Msa0697180:intron 40.0%
GGGTAGGAACATATATACAG+GGG + chr4_4:67159778-67159797 None:intergenic 40.0%
GTGGGTAGGAACATATATAC+AGG + chr4_4:67159780-67159799 None:intergenic 40.0%
!!! ACAAGCTGGTTTTGTAGAGA+TGG - chr4_4:67159945-67159964 Msa0697180:intron 40.0%
!!! CAAGCTGGTTTTGTAGAGAT+GGG - chr4_4:67159946-67159965 Msa0697180:intron 40.0%
! CGGCCTTGTATAGTTGAATT+AGG - chr4_4:67160013-67160032 Msa0697180:intron 40.0%
ACTTTGTTGGATGACTCGAA+TGG + chr4_4:67160073-67160092 None:intergenic 40.0%
AGTGACGAGTATCACTTTGT+TGG + chr4_4:67160086-67160105 None:intergenic 40.0%
ATACTCGTCACTCTACGAAT+TGG - chr4_4:67160094-67160113 Msa0697180:intron 40.0%
AACTTACCAATTAAGCCCCA+AGG - chr4_4:67160181-67160200 Msa0697180:intron 40.0%
ACTTACCAATTAAGCCCCAA+GGG - chr4_4:67160182-67160201 Msa0697180:intron 40.0%
TTCTGCAATAATGCATGGTG+GGG + chr4_4:67160713-67160732 None:intergenic 40.0%
CATTCTGCAATAATGCATGG+TGG + chr4_4:67160715-67160734 None:intergenic 40.0%
ATCTGGAAAAGTTGCTGTCA+TGG - chr4_4:67160760-67160779 Msa0697180:intron 40.0%
CCATCATCACTTATCCAAGT+TGG + chr4_4:67160806-67160825 None:intergenic 40.0%
CCAACTTGGATAAGTGATGA+TGG - chr4_4:67160803-67160822 Msa0697180:intron 40.0%
!! AAGTGATGATGGTCCATATG+TGG - chr4_4:67160814-67160833 Msa0697180:intron 40.0%
ATATTTCGAGAACCATCGAG+GGG + chr4_4:67160851-67160870 None:intergenic 40.0%
CAATATTTCGAGAACCATCG+AGG + chr4_4:67160853-67160872 None:intergenic 40.0%
ATTGATGCATCCATACCAAC+TGG - chr4_4:67160869-67160888 Msa0697180:intron 40.0%
CGGTATTTATAAACGCCTTG+AGG - chr4_4:67160901-67160920 Msa0697180:intron 40.0%
TTGCTGAATTCACTCCAAAG+TGG - chr4_4:67160956-67160975 Msa0697180:intron 40.0%
CTATCAGCCTATTTCCACTT+TGG + chr4_4:67160973-67160992 None:intergenic 40.0%
GAATGAAGTCTCCTGTTGAA+CGG + chr4_4:67161075-67161094 None:intergenic 40.0%
AAAGTGCATATGTTACCACG+GGG + chr4_4:67161124-67161143 None:intergenic 40.0%
AACTTAGGGACTGTATAGGA+TGG + chr4_4:67161642-67161661 None:intergenic 40.0%
!!! CTCTCTTGTTTTGTCACTCA+GGG - chr4_4:67161676-67161695 Msa0697180:intron 40.0%
GATACTGTGAGACAAGGAAA+AGG - chr4_4:67161762-67161781 Msa0697180:intron 40.0%
!! ATCCTAAGAAGTACTCTGCA+AGG - chr4_4:67161790-67161809 Msa0697180:intron 40.0%
! TACCTTGCAGAGTACTTCTT+AGG + chr4_4:67161795-67161814 None:intergenic 40.0%
! CTCCATCGAACTTTGTTGTA+TGG - chr4_4:67161837-67161856 Msa0697180:intron 40.0%
! CCATCGAACTTTGTTGTATG+GGG - chr4_4:67161839-67161858 Msa0697180:intron 40.0%
! CATCGAACTTTGTTGTATGG+GGG - chr4_4:67161840-67161859 Msa0697180:intron 40.0%
AAACCCTCTTAGTTTCATCG+TGG - chr4_4:67161908-67161927 Msa0697180:CDS 40.0%
! AGTCTTTGGTGCAGTTTAAC+TGG + chr4_4:67161987-67162006 None:intergenic 40.0%
TAGCATCAAACCTCATAACC+AGG + chr4_4:67162083-67162102 None:intergenic 40.0%
GGAGATGGTTATTTAGACCA+TGG - chr4_4:67162243-67162262 Msa0697180:five_prime_UTR 40.0%
! AGTTTGAAGCTTTGGTCGGA+AGG + chr4_4:67159193-67159212 None:intergenic 45.0%
GTTGGAGTGAAGAAAAGGGT+TGG + chr4_4:67159231-67159250 None:intergenic 45.0%
GAGTATGTAGGTAAAGGAGG+TGG - chr4_4:67159351-67159370 Msa0697180:CDS 45.0%
GTAGGTAAAGGAGGTGGAAT+TGG - chr4_4:67159357-67159376 Msa0697180:CDS 45.0%
GGGAATCATGACAAAATCGG+TGG - chr4_4:67159648-67159667 Msa0697180:CDS 45.0%
CGTCACTCTACGAATTGGTT+TGG - chr4_4:67160099-67160118 Msa0697180:intron 45.0%
! GCAGATTATCTAGCTCCTCA+AGG + chr4_4:67160919-67160938 None:intergenic 45.0%
GGAAATAGGCTGATAGCTTC+TGG - chr4_4:67160977-67160996 Msa0697180:intron 45.0%
!! TCTGCATTACCTTTGGCTCT+GGG - chr4_4:67161029-67161048 Msa0697180:intron 45.0%
!! CGGGGAGGAATTTTAATGCT+TGG + chr4_4:67161106-67161125 None:intergenic 45.0%
AGCATTAAAATTCCTCCCCG+TGG - chr4_4:67161106-67161125 Msa0697180:intron 45.0%
!!! GCTCTCTTGTTTTGTCACTC+AGG - chr4_4:67161675-67161694 Msa0697180:intron 45.0%
!! TTGATTGGCCTGAAGGCTTA+AGG - chr4_4:67161730-67161749 Msa0697180:intron 45.0%
CCCCATACAACAAAGTTCGA+TGG + chr4_4:67161842-67161861 None:intergenic 45.0%
! AACTTTGTTGTATGGGGGTG+TGG - chr4_4:67161845-67161864 Msa0697180:CDS 45.0%
GCTCCACGATGAAACTAAGA+GGG + chr4_4:67161914-67161933 None:intergenic 45.0%
TGCTCCACGATGAAACTAAG+AGG + chr4_4:67161915-67161934 None:intergenic 45.0%
GAGGATCCGATGGAAAAAGT+AGG - chr4_4:67161946-67161965 Msa0697180:CDS 45.0%
TACCCACTGAGCTAAGCTCA+CGG - chr4_4:67159793-67159812 Msa0697180:intron 50.0%
GAAGACCCTTGGGGCTTAAT+TGG + chr4_4:67160190-67160209 None:intergenic 50.0%
GGATCTGTCACGACCACATA+TGG + chr4_4:67160830-67160849 None:intergenic 50.0%
GCTAGATAATCTGCCCACAG+AGG - chr4_4:67160925-67160944 Msa0697180:intron 50.0%
TAATCTGCCCACAGAGGAGA+AGG - chr4_4:67160931-67160950 Msa0697180:intron 50.0%
AGCAAAGCCTTCTCCTCTGT+GGG + chr4_4:67160941-67160960 None:intergenic 50.0%
! CTCTGCATTACCTTTGGCTC+TGG - chr4_4:67161028-67161047 Msa0697180:intron 50.0%
TTCACTCTCGACCGTTCAAC+AGG - chr4_4:67161061-67161080 Msa0697180:intron 50.0%
ACAAGACGAAGATGGTCCCT+CGG + chr4_4:67161879-67161898 None:intergenic 50.0%
AGTTTCATCGTGGAGCAAGC+TGG - chr4_4:67161918-67161937 Msa0697180:CDS 50.0%
GGTGTGTCAGGGTTCGAACT+CGG - chr4_4:67159752-67159771 Msa0697180:intron 55.0%
GTGAGCTTAGCTCAGTGGGT+AGG + chr4_4:67159794-67159813 None:intergenic 55.0%
ACCCACTGAGCTAAGCTCAC+GGG - chr4_4:67159794-67159813 Msa0697180:intron 55.0%
CAGCAAAGCCTTCTCCTCTG+TGG + chr4_4:67160942-67160961 None:intergenic 55.0%
TGCATGTGTCCCAGAGCCAA+AGG + chr4_4:67161041-67161060 None:intergenic 55.0%
GTGCATATGTTACCACGGGG+AGG + chr4_4:67161121-67161140 None:intergenic 55.0%
TTCATCGTGGAGCAAGCTGG+TGG - chr4_4:67161921-67161940 Msa0697180:CDS 55.0%
TCATCGTGGAGCAAGCTGGT+GGG - chr4_4:67161922-67161941 Msa0697180:CDS 55.0%
CCCCGTGAGCTTAGCTCAGT+GGG + chr4_4:67159798-67159817 None:intergenic 60.0%
CCCACTGAGCTAAGCTCACG+GGG - chr4_4:67159795-67159814 Msa0697180:intron 60.0%
TCCCCGTGAGCTTAGCTCAG+TGG + chr4_4:67159799-67159818 None:intergenic 60.0%
GTCGTGACAGATCCCCTCGA+TGG - chr4_4:67160836-67160855 Msa0697180:intron 60.0%
GGGTGTGGCGATGAATCCGA+GGG - chr4_4:67161860-67161879 Msa0697180:CDS 60.0%
GGGGTGTGGCGATGAATCCG+AGG - chr4_4:67161859-67161878 Msa0697180:CDS 65.0%
GTGGAGCAAGCTGGTGGGAG+AGG - chr4_4:67161927-67161946 Msa0697180:CDS 65.0%
GCTGGTGGGAGAGGATCCGA+TGG - chr4_4:67161936-67161955 Msa0697180:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 67159075 67162298 67159075 ID=Msa0697180;Name=Msa0697180
chr4_4 mRNA 67159075 67162298 67159075 ID=Msa0697180-mRNA-1;Parent=Msa0697180;Name=Msa0697180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=72|1|1|1|1|1|3|201|393
chr4_4 exon 67159075 67159676 67159075 ID=Msa0697180-mRNA-1:exon:19617;Parent=Msa0697180-mRNA-1
chr4_4 exon 67160246 67160642 67160246 ID=Msa0697180-mRNA-1:exon:19616;Parent=Msa0697180-mRNA-1
chr4_4 exon 67161843 67162298 67161843 ID=Msa0697180-mRNA-1:exon:19615;Parent=Msa0697180-mRNA-1
chr4_4 five_prime_UTR 67162227 67162298 67162227 ID=Msa0697180-mRNA-1:five_prime_utr;Parent=Msa0697180-mRNA-1
chr4_4 CDS 67161843 67162226 67161843 ID=Msa0697180-mRNA-1:cds;Parent=Msa0697180-mRNA-1
chr4_4 CDS 67160246 67160642 67160246 ID=Msa0697180-mRNA-1:cds;Parent=Msa0697180-mRNA-1
chr4_4 CDS 67159276 67159676 67159276 ID=Msa0697180-mRNA-1:cds;Parent=Msa0697180-mRNA-1
chr4_4 three_prime_UTR 67159075 67159275 67159075 ID=Msa0697180-mRNA-1:three_prime_utr;Parent=Msa0697180-mRNA-1
Gene Sequence

>Msa0697180

ATGCAGTCAGCAGCAACAACAACACCCTTCTATCAACTCATCACCTTCCGACCAAAGCTTCAAACTTTCCAACCAAAAATTCCAACCCTTTTCTTCACTCCAACAATGGCTTCAGTAACAAGAGTAAAACCACTATCAGTCTTAGGTACTTCTTCCTCATCTTCATCAACAGTAGCAAGTGATGATGGGTCTGTTACATTGATGGAGTATGTAGGTAAAGGAGGTGGAATTGGTGTGAATGATGATTTGGTGATTTTGATTGATCATATACAGTATGCTTGTAAGAGAATTGCAGCTCTTATAGCTTCTCCTTTCAATTATACCATTGATATGCCAAATAGTGGTTCTGATAGGGATGCTCCAAAGCCTCTTGATATTATATCGAATGAAATTATCTTGTCATCACTTCAAAAATCTGGAAAAGTTGCTGTCATGGCTTCTGAAGAAAATGATACACCAACTTGGATAAGTGATGATGGTCCATATGTGGTCGTGACAGATCCCCTCGATGGTTCTCGAAATATTGATGCATCCATACCAACTGGTACAATTTTCGGTATTTATAAACGCCTTGAGGAGCTAGATAATCTGCCCACAGAGGAGAAGGCTTTGCTGAATTCACTCCAAAGTGGAAATAGGCTGATAGCTTCTGGTTATGTTCTTTATTCATCTGCAACTATACTCTGCATTACCTTTGGCTCTGGGACACATGCATTCACTCTCGACCGTTCAACAGGAGACTTCATTCTGACAAATCCAAGCATTAAAATTCCTCCCCGTGGGCAAATATATTCTGTGAATGATGCAAGATATTTTGATTGGCCTGAAGGCTTAAGGAAATATATTGATACTGTGAGACAAGGAAAAGGTAGATATCCTAAGAAGTACTCTGCAAGGTATATATGCTCTCTAGTAGCTGATCTCCATCGAACTTTGTTGTATGGGGGTGTGGCGATGAATCCGAGGGACCATCTTCGTCTTGTTTATGAAGCAAACCCTCTTAGTTTCATCGTGGAGCAAGCTGGTGGGAGAGGATCCGATGGAAAAAGTAGGATTCTTTCTCTTCAACCAGTTAAACTGCACCAAAGACTTCCTCTCTTTTTAGGGAGTTTGAAAGACATGGAAGAGTTGGAAAGTTATGGAGACGTACAACAAAAAGTAAATCCTGGTTATGAGGTTTGA

Protein sequence

>Msa0697180

MQSAATTTPFYQLITFRPKLQTFQPKIPTLFFTPTMASVTRVKPLSVLGTSSSSSSTVASDDGSVTLMEYVGKGGGIGVNDDLVILIDHIQYACKRIAALIASPFNYTIDMPNSGSDRDAPKPLDIISNEIILSSLQKSGKVAVMASEENDTPTWISDDGPYVVVTDPLDGSRNIDASIPTGTIFGIYKRLEELDNLPTEEKALLNSLQSGNRLIASGYVLYSSATILCITFGSGTHAFTLDRSTGDFILTNPSIKIPPRGQIYSVNDARYFDWPEGLRKYIDTVRQGKGRYPKKYSARYICSLVADLHRTLLYGGVAMNPRDHLRLVYEANPLSFIVEQAGGRGSDGKSRILSLQPVKLHQRLPLFLGSLKDMEELESYGDVQQKVNPGYEV*