Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767010 | sp|Q67Y99|CLPF_ARATH | 59.779 | 271 | 75 | 3 | 2 | 270 | 92 | 330 | 3.57e-107 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767010 | A0A072UDI9 | 81.387 | 274 | 20 | 2 | 1 | 274 | 1 | 243 | 4.60e-156 | 443 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022960 | Msa0767010 | 0.813692 | 2.250486e-51 | -8.615850e-47 |
| Msa0042130 | Msa0767010 | 0.807955 | 3.926001e-50 | -8.615850e-47 |
| Msa0606380 | Msa0767010 | 0.815819 | 7.602179e-52 | -8.615850e-47 |
| Msa0624360 | Msa0767010 | 0.808884 | 2.486996e-50 | -8.615850e-47 |
| Msa0626900 | Msa0767010 | 0.801750 | 7.769445e-49 | -8.615850e-47 |
| Msa0640780 | Msa0767010 | 0.804710 | 1.895268e-49 | -8.615850e-47 |
| Msa0644610 | Msa0767010 | 0.823156 | 1.612243e-53 | -8.615850e-47 |
| Msa0648810 | Msa0767010 | 0.841494 | 4.594287e-58 | -8.615850e-47 |
| Msa0711860 | Msa0767010 | 0.801726 | 7.858446e-49 | -8.615850e-47 |
| Msa0712670 | Msa0767010 | 0.809897 | 1.507439e-50 | -8.615850e-47 |
| Msa0719160 | Msa0767010 | 0.800427 | 1.448511e-48 | -8.615850e-47 |
| Msa0744280 | Msa0767010 | 0.805207 | 1.491989e-49 | -8.615850e-47 |
| Msa0761930 | Msa0767010 | 0.811787 | 5.879367e-51 | -8.615850e-47 |
| Msa0767010 | Msa0805000 | 0.806113 | 9.630977e-50 | -8.615850e-47 |
| Msa0767010 | Msa0805030 | 0.810399 | 1.175313e-50 | -8.615850e-47 |
| Msa0767010 | Msa0872110 | 0.818597 | 1.803844e-52 | -8.615850e-47 |
| Msa0767010 | Msa0975460 | 0.806610 | 7.564821e-50 | -8.615850e-47 |
| Msa0767010 | Msa0978290 | 0.823888 | 1.086668e-53 | -8.615850e-47 |
| Msa0767010 | Msa1017590 | 0.833064 | 6.608071e-56 | -8.615850e-47 |
| Msa0767010 | Msa1028720 | 0.830661 | 2.589981e-55 | -8.615850e-47 |
| Msa0767010 | Msa1029010 | 0.801048 | 1.081881e-48 | -8.615850e-47 |
| Msa0767010 | Msa1030440 | 0.819951 | 8.870083e-53 | -8.615850e-47 |
| Msa0767010 | Msa1032790 | 0.827129 | 1.854735e-54 | -8.615850e-47 |
| Msa0767010 | Msa1061130 | 0.806476 | 8.077304e-50 | -8.615850e-47 |
| Msa0767010 | Msa1069450 | 0.807755 | 4.328481e-50 | -8.615850e-47 |
| Msa0767010 | Msa1070710 | 0.802760 | 4.813897e-49 | -8.615850e-47 |
| Msa0767010 | Msa1070930 | 0.835961 | 1.236680e-56 | -8.615850e-47 |
| Msa0767010 | Msa1088690 | 0.809204 | 2.123938e-50 | -8.615850e-47 |
| Msa0767010 | Msa1121290 | 0.806651 | 7.418245e-50 | -8.615850e-47 |
| Msa0767010 | Msa1132540 | 0.814250 | 1.695555e-51 | -8.615850e-47 |
| Msa0767010 | Msa1161550 | 0.810745 | 9.892747e-51 | -8.615850e-47 |
| Msa0767010 | Msa1182950 | 0.821867 | 3.212691e-53 | -8.615850e-47 |
| Msa0767010 | Msa1196910 | 0.805504 | 1.293216e-49 | -8.615850e-47 |
| Msa0767010 | Msa1229880 | 0.801191 | 1.011514e-48 | -8.615850e-47 |
| Msa0767010 | Msa1230210 | 0.815573 | 8.627580e-52 | -8.615850e-47 |
| Msa0767010 | Msa1249740 | 0.826065 | 3.327276e-54 | -8.615850e-47 |
| Msa0767010 | Msa1250490 | 0.809255 | 2.070912e-50 | -8.615850e-47 |
| Msa0767010 | Msa1277830 | 0.814157 | 1.777342e-51 | -8.615850e-47 |
| Msa0767010 | Msa1277890 | 0.819685 | 1.020147e-52 | -8.615850e-47 |
| Msa0767010 | Msa1277930 | 0.811576 | 6.532483e-51 | -8.615850e-47 |
| Msa0767010 | Msa1279340 | 0.802569 | 5.272427e-49 | -8.615850e-47 |
| Msa0767010 | Msa1280520 | 0.808895 | 2.473425e-50 | -8.615850e-47 |
| Msa0767010 | Msa1286660 | 0.809557 | 1.784000e-50 | -8.615850e-47 |
| Msa0767010 | Msa1288380 | 0.806674 | 7.333305e-50 | -8.615850e-47 |
| Msa0767010 | Msa1308010 | 0.804947 | 1.691329e-49 | -8.615850e-47 |
| Msa0767010 | Msa1310620 | 0.818021 | 2.436143e-52 | -8.615850e-47 |
| Msa0767010 | Msa1319520 | 0.821129 | 4.758035e-53 | -8.615850e-47 |
| Msa0767010 | Msa1335210 | 0.800830 | 1.198975e-48 | -8.615850e-47 |
| Msa0767010 | Msa1346220 | 0.806772 | 6.994617e-50 | -8.615850e-47 |
| Msa0767010 | Msa1350350 | 0.844697 | 6.439750e-59 | -8.615850e-47 |
| Msa0767010 | Msa1381830 | 0.804847 | 1.774611e-49 | -8.615850e-47 |
| Msa0767010 | Msa1393350 | 0.830007 | 3.742881e-55 | -8.615850e-47 |
| Msa0767010 | Msa1420600 | 0.815920 | 7.218159e-52 | -8.615850e-47 |
| Msa0767010 | Msa1455180 | 0.829324 | 5.484898e-55 | -8.615850e-47 |
| Msa0131230 | Msa0767010 | 0.805245 | 1.465055e-49 | -8.615850e-47 |
| Msa0132920 | Msa0767010 | 0.805686 | 1.184194e-49 | -8.615850e-47 |
| Msa0149070 | Msa0767010 | 0.808075 | 3.700672e-50 | -8.615850e-47 |
| Msa0156780 | Msa0767010 | 0.816123 | 6.504877e-52 | -8.615850e-47 |
| Msa0203330 | Msa0767010 | 0.817493 | 3.205364e-52 | -8.615850e-47 |
| Msa0224980 | Msa0767010 | 0.808941 | 2.418532e-50 | -8.615850e-47 |
| Msa0225030 | Msa0767010 | 0.810832 | 9.471716e-51 | -8.615850e-47 |
| Msa0365150 | Msa0767010 | 0.810558 | 1.086135e-50 | -8.615850e-47 |
| Msa0373640 | Msa0767010 | 0.807602 | 4.666308e-50 | -8.615850e-47 |
| Msa0416530 | Msa0767010 | 0.810037 | 1.406415e-50 | -8.615850e-47 |
| Msa0416880 | Msa0767010 | 0.817745 | 2.812019e-52 | -8.615850e-47 |
| Msa0420280 | Msa0767010 | 0.805002 | 1.647346e-49 | -8.615850e-47 |
| Msa0426860 | Msa0767010 | 0.801640 | 8.184364e-49 | -8.615850e-47 |
| Msa0426890 | Msa0767010 | 0.800221 | 1.595691e-48 | -8.615850e-47 |
| Msa0243160 | Msa0767010 | 0.847896 | 8.653004e-60 | -8.615850e-47 |
| Msa0249670 | Msa0767010 | 0.810355 | 1.200914e-50 | -8.615850e-47 |
| Msa0256120 | Msa0767010 | 0.804307 | 2.300462e-49 | -8.615850e-47 |
| Msa0260930 | Msa0767010 | 0.836050 | 1.174535e-56 | -8.615850e-47 |
| Msa0317630 | Msa0767010 | 0.800930 | 1.144085e-48 | -8.615850e-47 |
| Msa0319720 | Msa0767010 | 0.805460 | 1.320645e-49 | -8.615850e-47 |
| Msa0321230 | Msa0767010 | 0.821538 | 3.827700e-53 | -8.615850e-47 |
| Msa0335860 | Msa0767010 | 0.840317 | 9.350110e-58 | -8.615850e-47 |
| Msa0340440 | Msa0767010 | 0.810833 | 9.469433e-51 | -8.615850e-47 |
| Msa0484890 | Msa0767010 | 0.820959 | 5.206587e-53 | -8.615850e-47 |
| Msa0508770 | Msa0767010 | 0.839486 | 1.540129e-57 | -8.615850e-47 |
| Msa0515400 | Msa0767010 | 0.812203 | 4.770221e-51 | -8.615850e-47 |
| Msa0532880 | Msa0767010 | 0.806787 | 6.943374e-50 | -8.615850e-47 |
| Msa0537960 | Msa0767010 | 0.834925 | 2.260037e-56 | -8.615850e-47 |
| Msa0565930 | Msa0767010 | 0.820479 | 6.710913e-53 | -8.615850e-47 |
| Msa0587060 | Msa0767010 | 0.808078 | 3.696187e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767010 | MtrunA17_Chr5g0418451 | 77.818 | 275 | 28 | 3 | 2 | 274 | 90 | 333 | 3.68e-138 | 392 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767010 | AT2G03390.2 | 61.905 | 252 | 64 | 3 | 19 | 270 | 1 | 220 | 9.23e-109 | 314 |
| Msa0767010 | AT2G03390.4 | 59.779 | 271 | 75 | 3 | 2 | 270 | 92 | 330 | 3.63e-108 | 317 |
| Msa0767010 | AT2G03390.1 | 59.779 | 271 | 75 | 3 | 2 | 270 | 92 | 330 | 3.63e-108 | 317 |
| Msa0767010 | AT2G03390.7 | 66.667 | 174 | 55 | 2 | 2 | 173 | 92 | 264 | 3.52e-75 | 230 |
| Msa0767010 | AT2G03390.6 | 66.667 | 174 | 55 | 2 | 2 | 173 | 92 | 264 | 3.52e-75 | 230 |
| Msa0767010 | AT2G03390.5 | 68.485 | 165 | 50 | 1 | 2 | 164 | 92 | 256 | 1.20e-74 | 229 |
| Msa0767010 | AT2G03390.3 | 68.485 | 165 | 50 | 1 | 2 | 164 | 92 | 256 | 1.20e-74 | 229 |
Find 102 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTACTTTGTTTGCGTTCC+TGG | 0.197005 | 5_2:-29489684 | Msa0767010:CDS |
| CTGAAACACACATCATTCTT+TGG | 0.200558 | 5_2:-29492786 | Msa0767010:five_prime_UTR |
| AAAAGGGTAAATTTGTATTT+AGG | 0.201911 | 5_2:-29492817 | Msa0767010:five_prime_UTR |
| TAGTGTATTTGCCATATTTA+TGG | 0.239805 | 5_2:-29492225 | Msa0767010:exon |
| AACAAAGTAATAATATTAAT+TGG | 0.240732 | 5_2:+29489695 | None:intergenic |
| TTCTTAATGCTTCATTTGTT+TGG | 0.255245 | 5_2:-29492197 | Msa0767010:CDS |
| TTCTCCCGCAGTTGCTTAAT+AGG | 0.261631 | 5_2:+29489386 | None:intergenic |
| TTGAAGAGTTTAGTGTTTAT+TGG | 0.264698 | 5_2:-29492620 | Msa0767010:five_prime_UTR |
| GTAATATGTGATCGTTTAAA+TGG | 0.273515 | 5_2:+29492680 | None:intergenic |
| GCAACAGAAGGAGTGCTTTC+TGG | 0.279229 | 5_2:+29489172 | None:intergenic |
| TAAGAAATCTTCCATAAATA+TGG | 0.287930 | 5_2:+29492214 | None:intergenic |
| TGGGAAGCCATCGACGCTTT+TGG | 0.290823 | 5_2:-29493373 | Msa0767010:five_prime_UTR |
| TGAAGAGTTTAGTGTTTATT+GGG | 0.311579 | 5_2:-29492619 | Msa0767010:five_prime_UTR |
| TACCACCTATCATCTTCCTT+TGG | 0.324413 | 5_2:-29488921 | Msa0767010:three_prime_UTR |
| AAGAGACTCTGCTTCAAGTT+TGG | 0.332003 | 5_2:+29490991 | None:intergenic |
| AATAATATTAATTGGTTCAA+TGG | 0.336300 | 5_2:+29489703 | None:intergenic |
| GATGATAGGTGGTATTATTA+AGG | 0.337493 | 5_2:+29488930 | None:intergenic |
| ATGAAGTTCCATGTTGTTCT+TGG | 0.338332 | 5_2:-29489651 | Msa0767010:CDS |
| ACCACCTATCATCTTCCTTT+GGG | 0.343120 | 5_2:-29488920 | Msa0767010:three_prime_UTR |
| CCACTGGAAAACACTTGGTT+TGG | 0.357930 | 5_2:-29492652 | Msa0767010:five_prime_UTR |
| CTTACTTTGTCTGGTTTGTC+AGG | 0.358622 | 5_2:+29489550 | None:intergenic |
| ATAGATGCACTTACTTTGTC+TGG | 0.369403 | 5_2:+29489541 | None:intergenic |
| CATCCTAAAATTATAGAGGC+TGG | 0.369836 | 5_2:-29488985 | Msa0767010:three_prime_UTR |
| CTTTATATTGCAAGAAAATA+CGG | 0.379076 | 5_2:-29492365 | Msa0767010:five_prime_UTR |
| TTCCCTCCATCTTCGTCACT+TGG | 0.379098 | 5_2:+29489326 | None:intergenic |
| GAAGCGGGATGGATGTTTAG+AGG | 0.384346 | 5_2:-29492557 | Msa0767010:five_prime_UTR |
| TCTCCCGCAGTTGCTTAATA+GGG | 0.393158 | 5_2:+29489387 | None:intergenic |
| GCACAATATGTCTTCCGCTT+GGG | 0.393631 | 5_2:-29490935 | Msa0767010:CDS |
| CTTCTTTGCCTCGACACAAA+AGG | 0.407025 | 5_2:+29492593 | None:intergenic |
| AAAGTAAAGCATAAAATGTT+TGG | 0.407562 | 5_2:-29490908 | Msa0767010:intron |
| TGCTGCATCAGCTAAAGCTT+TGG | 0.408060 | 5_2:-29490969 | Msa0767010:CDS |
| CCTCCATCTTCGTCACTTGG+TGG | 0.409997 | 5_2:+29489329 | None:intergenic |
| AGGAACATTCTCTTCAGAAA+AGG | 0.410863 | 5_2:-29492834 | Msa0767010:five_prime_UTR |
| TATAACATGGCTTTAAATTG+AGG | 0.420117 | 5_2:-29492401 | Msa0767010:five_prime_UTR |
| GAACTTGATTCACTGCATAC+TGG | 0.426333 | 5_2:+29490673 | None:intergenic |
| GATTTATTCTGTTATGTGAC+TGG | 0.428504 | 5_2:-29493393 | Msa0767010:five_prime_UTR |
| TGTGGAAAGAGTAGAATCTA+TGG | 0.432165 | 5_2:-29492716 | Msa0767010:five_prime_UTR |
| TATGCAGTGAATCAAGTTCA+TGG | 0.439684 | 5_2:-29490669 | Msa0767010:CDS |
| CACCACTTAACTATTTATCA+TGG | 0.445764 | 5_2:+29492248 | None:intergenic |
| GGAACATTCTCTTCAGAAAA+GGG | 0.446948 | 5_2:-29492833 | Msa0767010:five_prime_UTR |
| TTTCCATCCTAAAATTATAG+AGG | 0.447110 | 5_2:-29488989 | Msa0767010:three_prime_UTR |
| TAGAGGTGGAGAACAAGAGT+TGG | 0.460891 | 5_2:-29492540 | Msa0767010:five_prime_UTR |
| TACATAAAGTTAATGAGAAA+AGG | 0.461211 | 5_2:-29489022 | Msa0767010:three_prime_UTR |
| CTCTAAGTATTATACGTCTT+CGG | 0.463511 | 5_2:-29491337 | Msa0767010:intron |
| TGCACAATATGTCTTCCGCT+TGG | 0.468704 | 5_2:-29490936 | Msa0767010:CDS |
| GCTAATCAAACCTGATAAAA+CGG | 0.469627 | 5_2:+29490601 | None:intergenic |
| CTCCATCTTCGTCACTTGGT+GGG | 0.473073 | 5_2:+29489330 | None:intergenic |
| TTCTTTGCCTCGACACAAAA+GGG | 0.476325 | 5_2:+29492594 | None:intergenic |
| ACAACCCAAAGGAAGATGAT+AGG | 0.482172 | 5_2:+29488916 | None:intergenic |
| ATCACGTAATTTAGCAGCCA+AGG | 0.491405 | 5_2:+29491021 | None:intergenic |
| AACCATGATAAATAGTTAAG+TGG | 0.492475 | 5_2:-29492250 | Msa0767010:five_prime_UTR |
| TTCGTCACTTGGTGGGTCAA+AGG | 0.495368 | 5_2:+29489337 | None:intergenic |
| ATCTGCCACTGGAAAACACT+TGG | 0.501894 | 5_2:-29492657 | Msa0767010:five_prime_UTR |
| CACAATATGTCTTCCGCTTG+GGG | 0.503833 | 5_2:-29490934 | Msa0767010:CDS |
| TCGTCACTTGGTGGGTCAAA+GGG | 0.504592 | 5_2:+29489338 | None:intergenic |
| TTCTATGGAATGGATTCAGC+TGG | 0.505006 | 5_2:-29489419 | Msa0767010:CDS |
| CGGCTGTGCGGTTGAAATTG+TGG | 0.507086 | 5_2:-29492345 | Msa0767010:five_prime_UTR |
| TTTATCTGTAGTGAAAGTAC+TGG | 0.509134 | 5_2:-29489075 | Msa0767010:three_prime_UTR |
| ATAGGTGGTATTATTAAGGA+TGG | 0.512471 | 5_2:+29488934 | None:intergenic |
| ATCCTAAAATTATAGAGGCT+GGG | 0.518169 | 5_2:-29488984 | Msa0767010:three_prime_UTR |
| TAGAACAGAAAAGACATGTA+GGG | 0.523219 | 5_2:+29489437 | None:intergenic |
| CGAGAATGAAGATTATGCCT+TGG | 0.526531 | 5_2:-29491038 | Msa0767010:CDS |
| TTTATCGAAGGTTGAAGAAG+AGG | 0.534000 | 5_2:-29491420 | Msa0767010:intron |
| CATCCCTATTAAGCAACTGC+GGG | 0.535038 | 5_2:-29489390 | Msa0767010:CDS |
| TGATCGTTTAAATGGCTCAA+AGG | 0.535551 | 5_2:+29492688 | None:intergenic |
| TAGAGCTATAATCGTAGGAA+TGG | 0.538085 | 5_2:-29490698 | Msa0767010:CDS |
| CAGTGAATCAAGTTCATGGA+TGG | 0.538216 | 5_2:-29490665 | Msa0767010:CDS |
| GTGGGTCAAAGGGTATTTCG+TGG | 0.539921 | 5_2:+29489348 | None:intergenic |
| AAGATTTCCAAAAGCGTCGA+TGG | 0.543426 | 5_2:+29493366 | None:intergenic |
| GATCGTTTAAATGGCTCAAA+GGG | 0.543938 | 5_2:+29492689 | None:intergenic |
| GCGATGGTGAAAAGTAGAAA+AGG | 0.544300 | 5_2:-29489201 | Msa0767010:three_prime_UTR |
| TACAGACATATGATGAAGGC+AGG | 0.545191 | 5_2:+29489043 | None:intergenic |
| CTCTGCAACTGCAAAAGAGA+AGG | 0.552502 | 5_2:+29489588 | None:intergenic |
| GGATTTAGCCACAAGAGTGC+AGG | 0.557260 | 5_2:-29492456 | Msa0767010:five_prime_UTR |
| TTGTGGTCGCAACGCTGATG+TGG | 0.561969 | 5_2:-29492328 | Msa0767010:five_prime_UTR |
| ATAGAACAGAAAAGACATGT+AGG | 0.565791 | 5_2:+29489436 | None:intergenic |
| TTTCTGTAAACAAATACATG+TGG | 0.575119 | 5_2:-29489624 | Msa0767010:CDS |
| GGCTATAGAGCTATAATCGT+AGG | 0.576059 | 5_2:-29490703 | Msa0767010:CDS |
| TCACATATTACATCTGCCAC+TGG | 0.578536 | 5_2:-29492668 | Msa0767010:five_prime_UTR |
| ATTTATTCTGTTATGTGACT+GGG | 0.580956 | 5_2:-29493392 | Msa0767010:five_prime_UTR |
| TATGTACAGACATATGATGA+AGG | 0.584252 | 5_2:+29489039 | None:intergenic |
| GACCCACCAAGTGACGAAGA+TGG | 0.585639 | 5_2:-29489332 | Msa0767010:CDS |
| CAGCTACACCTGCACTCTTG+TGG | 0.590788 | 5_2:+29492448 | None:intergenic |
| GTTTGCGTTCCTGGTTTCTG+TGG | 0.592529 | 5_2:-29489675 | Msa0767010:CDS |
| GCGGGATGGATGTTTAGAGG+TGG | 0.602771 | 5_2:-29492554 | Msa0767010:five_prime_UTR |
| CACCAAGTGACGAAGATGGA+GGG | 0.603276 | 5_2:-29489328 | Msa0767010:CDS |
| TCAAAGGGTATTTCGTGGCG+CGG | 0.632604 | 5_2:+29489353 | None:intergenic |
| AACTTCATACCACAGAAACC+AGG | 0.639234 | 5_2:+29489666 | None:intergenic |
| AGAACAGAAAAGACATGTAG+GGG | 0.640432 | 5_2:+29489438 | None:intergenic |
| AACCTGATAAAACGGTTGAG+TGG | 0.641728 | 5_2:+29490609 | None:intergenic |
| CCACCAAGTGACGAAGATGG+AGG | 0.644237 | 5_2:-29489329 | Msa0767010:CDS |
| TTTATATTATGGTGCAATTG+CGG | 0.646624 | 5_2:-29492291 | Msa0767010:five_prime_UTR |
| TCATCCCTATTAAGCAACTG+CGG | 0.646965 | 5_2:-29489391 | Msa0767010:CDS |
| ATGTCAGTGTGCTTTAAACA+TGG | 0.651748 | 5_2:-29492165 | Msa0767010:CDS |
| GCTTTACTTTCTGCCCCAAG+CGG | 0.652168 | 5_2:+29490921 | None:intergenic |
| ACCCAAAGGAAGATGATAGG+TGG | 0.660281 | 5_2:+29488919 | None:intergenic |
| TTGAGCACACTAGTAACATG+TGG | 0.661964 | 5_2:-29492734 | Msa0767010:five_prime_UTR |
| GAAAGAAACCAAGAACAACA+TGG | 0.670218 | 5_2:+29489643 | None:intergenic |
| TGATTGCATTAACAACCCAA+AGG | 0.675188 | 5_2:+29488905 | None:intergenic |
| TGCAAGAAAATACGGCTGTG+CGG | 0.681796 | 5_2:-29492357 | Msa0767010:five_prime_UTR |
| CAAGTTAAGAAGTTGTCTCG+TGG | 0.688846 | 5_2:-29490634 | Msa0767010:CDS |
| GCTGCGAAACAAACTTACTG+AGG | 0.697627 | 5_2:-29492120 | Msa0767010:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTGAACA+AGG | + | chr5_2:29491627-29491646 | None:intergenic | 10.0% |
| !! | AACAAAGTAATAATATTAAT+TGG | + | chr5_2:29492705-29492724 | None:intergenic | 10.0% |
| !! | TAATATCATAAAAATACGAT+TGG | + | chr5_2:29488929-29488948 | None:intergenic | 15.0% |
| !!! | TTAAATCTTTGATTTTATGT+GGG | - | chr5_2:29489480-29489499 | Msa0767010:intron | 15.0% |
| !!! | TTAGTCTTTTATATATAACA+TGG | - | chr5_2:29489983-29490002 | Msa0767010:intron | 15.0% |
| !!! | ACTCAAAATGTTTTATATTA+TGG | - | chr5_2:29490095-29490114 | Msa0767010:intron | 15.0% |
| !!! | TAATAATTTGTTGTATTGAT+AGG | + | chr5_2:29491533-29491552 | None:intergenic | 15.0% |
| !! | CTTATAGAGTTAAAATTATT+CGG | + | chr5_2:29491885-29491904 | None:intergenic | 15.0% |
| !! | ATGAATTGTAAATGTATTTA+TGG | - | chr5_2:29492036-29492055 | Msa0767010:intron | 15.0% |
| !! | TACAATAACAAAAACATATA+AGG | + | chr5_2:29492076-29492095 | None:intergenic | 15.0% |
| !!! | TTTGTTATTGTATTAATAAC+TGG | - | chr5_2:29492084-29492103 | Msa0767010:intron | 15.0% |
| !!! | AATAATATTAATTGGTTCAA+TGG | + | chr5_2:29492697-29492716 | None:intergenic | 15.0% |
| !!! | TGTTATTTATGTTCTTTAAT+TGG | - | chr5_2:29492902-29492921 | Msa0767010:intron | 15.0% |
| !! | AGATGATATATTGAAAAAAT+TGG | - | chr5_2:29493166-29493185 | Msa0767010:intron | 15.0% |
| !! | AAAATATATACAGTGAAAGA+AGG | + | chr5_2:29489108-29489127 | None:intergenic | 20.0% |
| !! | GATATTGAGAAAATCAAAAT+AGG | + | chr5_2:29489155-29489174 | None:intergenic | 20.0% |
| !!! | TAACTGAACTAATTTTATCT+GGG | + | chr5_2:29489251-29489270 | None:intergenic | 20.0% |
| !!! | GTTATAAAAATCGAATTTTC+AGG | - | chr5_2:29489283-29489302 | Msa0767010:three_prime_UTR | 20.0% |
| !!! | GTTTAATTTTGATACTAACA+TGG | - | chr5_2:29489323-29489342 | Msa0767010:CDS | 20.0% |
| !! | CATAAAATCAAAGATTTAAC+TGG | + | chr5_2:29489479-29489498 | None:intergenic | 20.0% |
| !!! | GTTAAATCTTTGATTTTATG+TGG | - | chr5_2:29489479-29489498 | Msa0767010:intron | 20.0% |
| !!! | TAAATCTTTGATTTTATGTG+GGG | - | chr5_2:29489481-29489500 | Msa0767010:intron | 20.0% |
| !! | AAAAGGGTAAATTTGTATTT+AGG | - | chr5_2:29489580-29489599 | Msa0767010:CDS | 20.0% |
| !! | CTTTATATTGCAAGAAAATA+CGG | - | chr5_2:29490032-29490051 | Msa0767010:intron | 20.0% |
| !!! | TTTATCATGGTTTTAAATTG+CGG | + | chr5_2:29490139-29490158 | None:intergenic | 20.0% |
| !! | TAAGAAATCTTCCATAAATA+TGG | + | chr5_2:29490186-29490205 | None:intergenic | 20.0% |
| !!! | ATCATTTTATATTAGGTCAA+AGG | + | chr5_2:29490631-29490650 | None:intergenic | 20.0% |
| !!! | GACTAGAATCATTTTATATT+AGG | + | chr5_2:29490638-29490657 | None:intergenic | 20.0% |
| !!! | AAATGAAAATCACATTTTCT+CGG | - | chr5_2:29490706-29490725 | Msa0767010:intron | 20.0% |
| !! | CAAGAAAGAAAAAAAATCAT+TGG | + | chr5_2:29490796-29490815 | None:intergenic | 20.0% |
| !! | TGATAAATATTGTTTATCGA+AGG | - | chr5_2:29490965-29490984 | Msa0767010:CDS | 20.0% |
| !! | TTAAGCAAAAACAATCAAAA+AGG | - | chr5_2:29491003-29491022 | Msa0767010:CDS | 20.0% |
| !! | TAAGCAAAAACAATCAAAAA+GGG | - | chr5_2:29491004-29491023 | Msa0767010:CDS | 20.0% |
| !! | ATTTCTTCATCATTTATTCT+AGG | - | chr5_2:29491087-29491106 | Msa0767010:intron | 20.0% |
| !! | AAAGTAAAGCATAAAATGTT+TGG | - | chr5_2:29491489-29491508 | Msa0767010:intron | 20.0% |
| !! | TAATTAGCAACATATTGATA+AGG | - | chr5_2:29491560-29491579 | Msa0767010:intron | 20.0% |
| !!! | TTTTTTTTTTTTGAACAAGG+AGG | + | chr5_2:29491624-29491643 | None:intergenic | 20.0% |
| !!! | TGAATTATTCTGTTTCTATA+TGG | - | chr5_2:29491843-29491862 | Msa0767010:intron | 20.0% |
| !! | TCTTCAATTCTTATTATTAC+TGG | - | chr5_2:29491924-29491943 | Msa0767010:intron | 20.0% |
| !! | TACATAAAGTTAATGAGAAA+AGG | - | chr5_2:29493375-29493394 | Msa0767010:five_prime_UTR | 20.0% |
| !! | CATAAAAATACGATTGGTTA+AGG | + | chr5_2:29488923-29488942 | None:intergenic | 25.0% |
| ! | ATTTATTCTGTTATGTGACT+GGG | - | chr5_2:29489005-29489024 | Msa0767010:three_prime_UTR | 25.0% |
| ! | AAAAATTACCAAGAAAAGGT+TGG | + | chr5_2:29489084-29489103 | None:intergenic | 25.0% |
| ! | AGGAAAAAATTACCAAGAAA+AGG | + | chr5_2:29489088-29489107 | None:intergenic | 25.0% |
| ! | GAAAGAAGAAAATAACATGT+GGG | + | chr5_2:29489200-29489219 | None:intergenic | 25.0% |
| ! | TGAAAGAAGAAAATAACATG+TGG | + | chr5_2:29489201-29489220 | None:intergenic | 25.0% |
| !! | CTAACTGAACTAATTTTATC+TGG | + | chr5_2:29489252-29489271 | None:intergenic | 25.0% |
| !!! | AAATCTTTGATTTTATGTGG+GGG | - | chr5_2:29489482-29489501 | Msa0767010:intron | 25.0% |
| ! | GTAATATGTGATCGTTTAAA+TGG | + | chr5_2:29489720-29489739 | None:intergenic | 25.0% |
| ! | TTGAAGAGTTTAGTGTTTAT+TGG | - | chr5_2:29489777-29489796 | Msa0767010:intron | 25.0% |
| ! | TGAAGAGTTTAGTGTTTATT+GGG | - | chr5_2:29489778-29489797 | Msa0767010:intron | 25.0% |
| !!! | TATAACATGGCTTTAAATTG+AGG | - | chr5_2:29489996-29490015 | Msa0767010:intron | 25.0% |
| !! | CGTATTTTCTTGCAATATAA+AGG | + | chr5_2:29490034-29490053 | None:intergenic | 25.0% |
| ! | TTTATATTATGGTGCAATTG+CGG | - | chr5_2:29490106-29490125 | Msa0767010:intron | 25.0% |
| ! | AACCATGATAAATAGTTAAG+TGG | - | chr5_2:29490147-29490166 | Msa0767010:intron | 25.0% |
| ! | TAGTGTATTTGCCATATTTA+TGG | - | chr5_2:29490172-29490191 | Msa0767010:intron | 25.0% |
| ! | TTCTTAATGCTTCATTTGTT+TGG | - | chr5_2:29490200-29490219 | Msa0767010:intron | 25.0% |
| ! | GAATACAATAACAGTATTAG+TGG | + | chr5_2:29490316-29490335 | None:intergenic | 25.0% |
| ! | TACTAAATGTTGTCAAATAG+TGG | - | chr5_2:29490507-29490526 | Msa0767010:intron | 25.0% |
| ! | TTCAAGTATGATGTAGAATT+CGG | - | chr5_2:29490598-29490617 | Msa0767010:intron | 25.0% |
| !! | TTCAGATCATCTAATTTTTC+TGG | - | chr5_2:29490911-29490930 | Msa0767010:CDS | 25.0% |
| !!! | TCATCTAATTTTTCTGGTAT+TGG | - | chr5_2:29490917-29490936 | Msa0767010:CDS | 25.0% |
| ! | AAGCAAAAACAATCAAAAAG+GGG | - | chr5_2:29491005-29491024 | Msa0767010:CDS | 25.0% |
| ! | TGAAATTATTCATCCAAACA+GGG | + | chr5_2:29492235-29492254 | None:intergenic | 25.0% |
| ! | ATGAAATTATTCATCCAAAC+AGG | + | chr5_2:29492236-29492255 | None:intergenic | 25.0% |
| !! | ATAAGAAAACAGTTTGACTT+GGG | + | chr5_2:29492419-29492438 | None:intergenic | 25.0% |
| ! | TATAAGAAAACAGTTTGACT+TGG | + | chr5_2:29492420-29492439 | None:intergenic | 25.0% |
| !! | AATATAATGTGAGACTGTTT+TGG | + | chr5_2:29492536-29492555 | None:intergenic | 25.0% |
| ! | TTTCTGTAAACAAATACATG+TGG | - | chr5_2:29492773-29492792 | Msa0767010:five_prime_UTR | 25.0% |
| !!! | AATTTTAGGATGGAAATAGT+AGG | + | chr5_2:29493404-29493423 | None:intergenic | 25.0% |
| ! | TTTCCATCCTAAAATTATAG+AGG | - | chr5_2:29493408-29493427 | Msa0767010:five_prime_UTR | 25.0% |
| GATTTATTCTGTTATGTGAC+TGG | - | chr5_2:29489004-29489023 | Msa0767010:three_prime_UTR | 30.0% | |
| AGTTCAGTTAGAGTCTAATT+TGG | - | chr5_2:29489261-29489280 | Msa0767010:three_prime_UTR | 30.0% | |
| !! | AATCTTTGATTTTATGTGGG+GGG | - | chr5_2:29489483-29489502 | Msa0767010:intron | 30.0% |
| AGAGAATGTTCCTGAATTAT+TGG | + | chr5_2:29489556-29489575 | None:intergenic | 30.0% | |
| TTCTTTGGATTCACCAAAAA+TGG | - | chr5_2:29489626-29489645 | Msa0767010:CDS | 30.0% | |
| !!! | AAGTAGTTTTAAGGTTGAAG+CGG | - | chr5_2:29489824-29489843 | Msa0767010:intron | 30.0% |
| !!! | CTTGATGTTCTTTTTTCAAC+TGG | - | chr5_2:29489920-29489939 | Msa0767010:intron | 30.0% |
| CACCACTTAACTATTTATCA+TGG | + | chr5_2:29490152-29490171 | None:intergenic | 30.0% | |
| ATTGTATTCTATACCAAACC+AGG | - | chr5_2:29490327-29490346 | Msa0767010:intron | 30.0% | |
| TAGACACTATGTAACAACAT+TGG | + | chr5_2:29490429-29490448 | None:intergenic | 30.0% | |
| ATGTTGTCAATCACAAATTG+CGG | + | chr5_2:29490562-29490581 | None:intergenic | 30.0% | |
| CAATTTGTGATTGACAACAT+TGG | - | chr5_2:29490562-29490581 | Msa0767010:intron | 30.0% | |
| ATTCTAGTCAAATCGAAGTT+TGG | - | chr5_2:29490649-29490668 | Msa0767010:CDS | 30.0% | |
| ! | AAAAGTATATGTGCGTGTTT+GGG | + | chr5_2:29490764-29490783 | None:intergenic | 30.0% |
| TCATACAAGGGTAAAAAAAC+AGG | + | chr5_2:29490821-29490840 | None:intergenic | 30.0% | |
| TCTGAAAACATATACACGAA+GGG | + | chr5_2:29490897-29490916 | None:intergenic | 30.0% | |
| ATCTGAAAACATATACACGA+AGG | + | chr5_2:29490898-29490917 | None:intergenic | 30.0% | |
| CTCTAAGTATTATACGTCTT+CGG | - | chr5_2:29491060-29491079 | Msa0767010:CDS | 30.0% | |
| !! | AACTCAGCTATTTTCACATT+TGG | + | chr5_2:29491177-29491196 | None:intergenic | 30.0% |
| GCTGAATATCTCATAAATGT+GGG | - | chr5_2:29491582-29491601 | Msa0767010:intron | 30.0% | |
| !!! | TTTTTTTGAACAAGGAGGAA+AGG | + | chr5_2:29491619-29491638 | None:intergenic | 30.0% |
| CATCGAGGAATCAAAATATA+AGG | + | chr5_2:29491665-29491684 | None:intergenic | 30.0% | |
| GCTAATCAAACCTGATAAAA+CGG | + | chr5_2:29491799-29491818 | None:intergenic | 30.0% | |
| !! | TTATCAGGTTTGATTAGCTT+CGG | - | chr5_2:29491801-29491820 | Msa0767010:intron | 30.0% |
| TAATTGTTCAGACCTTTGAT+TGG | - | chr5_2:29492122-29492141 | Msa0767010:CDS | 30.0% | |
| !!! | TTTCCCTTTTTCAAATGTCT+AGG | - | chr5_2:29492145-29492164 | Msa0767010:CDS | 30.0% |
| GAACCTAGACATTTGAAAAA+GGG | + | chr5_2:29492151-29492170 | None:intergenic | 30.0% | |
| AGAACCTAGACATTTGAAAA+AGG | + | chr5_2:29492152-29492171 | None:intergenic | 30.0% | |
| ! | AAGTTATTCTAGAGAGCTTA+TGG | - | chr5_2:29492459-29492478 | Msa0767010:five_prime_UTR | 30.0% |
| CTTATGGAAAAAGCTGAAAA+CGG | - | chr5_2:29492475-29492494 | Msa0767010:five_prime_UTR | 30.0% | |
| CAGTCTCACATTATATTTGA+TGG | - | chr5_2:29492539-29492558 | Msa0767010:five_prime_UTR | 30.0% | |
| !!! | CACAAACAACTTGTTACTTT+TGG | - | chr5_2:29492587-29492606 | Msa0767010:five_prime_UTR | 30.0% |
| ATGTACAGAAAAGCAATTGT+AGG | + | chr5_2:29492641-29492660 | None:intergenic | 30.0% | |
| TAGAACAGAAAAGACATGTA+GGG | + | chr5_2:29492963-29492982 | None:intergenic | 30.0% | |
| ATAGAACAGAAAAGACATGT+AGG | + | chr5_2:29492964-29492983 | None:intergenic | 30.0% | |
| ! | TACATGTCTTTTCTGTTCTA+TGG | - | chr5_2:29492963-29492982 | Msa0767010:intron | 30.0% |
| ! | TTTATCTGTAGTGAAAGTAC+TGG | - | chr5_2:29493322-29493341 | Msa0767010:intron | 30.0% |
| TATGTACAGACATATGATGA+AGG | + | chr5_2:29493361-29493380 | None:intergenic | 30.0% | |
| ATCCTAAAATTATAGAGGCT+GGG | - | chr5_2:29493413-29493432 | Msa0767010:five_prime_UTR | 30.0% | |
| ATAGGTGGTATTATTAAGGA+TGG | + | chr5_2:29493466-29493485 | None:intergenic | 30.0% | |
| GATGATAGGTGGTATTATTA+AGG | + | chr5_2:29493470-29493489 | None:intergenic | 30.0% | |
| GTAACAGAAAAAGAAGAAGC+AGG | + | chr5_2:29489062-29489081 | None:intergenic | 35.0% | |
| ! | TTCTGTTACCAACCTTTTCT+TGG | - | chr5_2:29489073-29489092 | Msa0767010:three_prime_UTR | 35.0% |
| !! | AATAACATGTGGGTATTGAG+TGG | + | chr5_2:29489190-29489209 | None:intergenic | 35.0% |
| AATTATTTACACCCGCATGT+AGG | - | chr5_2:29489444-29489463 | Msa0767010:CDS | 35.0% | |
| TTCTGTGTTGCCAATAATTC+AGG | - | chr5_2:29489543-29489562 | Msa0767010:intron | 35.0% | |
| AGGAACATTCTCTTCAGAAA+AGG | - | chr5_2:29489563-29489582 | Msa0767010:CDS | 35.0% | |
| GGAACATTCTCTTCAGAAAA+GGG | - | chr5_2:29489564-29489583 | Msa0767010:CDS | 35.0% | |
| CTGAAACACACATCATTCTT+TGG | - | chr5_2:29489611-29489630 | Msa0767010:CDS | 35.0% | |
| TGTGGAAAGAGTAGAATCTA+TGG | - | chr5_2:29489681-29489700 | Msa0767010:CDS | 35.0% | |
| GATCGTTTAAATGGCTCAAA+GGG | + | chr5_2:29489711-29489730 | None:intergenic | 35.0% | |
| TGATCGTTTAAATGGCTCAA+AGG | + | chr5_2:29489712-29489731 | None:intergenic | 35.0% | |
| !! | GAGGCAAAGAAGTAGTTTTA+AGG | - | chr5_2:29489815-29489834 | Msa0767010:intron | 35.0% |
| !!! | AGTAGTTTTAAGGTTGAAGC+GGG | - | chr5_2:29489825-29489844 | Msa0767010:intron | 35.0% |
| ! | ATGTCAGTGTGCTTTAAACA+TGG | - | chr5_2:29490232-29490251 | Msa0767010:intron | 35.0% |
| AGTGTCTATACGTTACAACA+TGG | - | chr5_2:29490441-29490460 | Msa0767010:intron | 35.0% | |
| TCACAAATTGCGGAAAATAG+AGG | + | chr5_2:29490552-29490571 | None:intergenic | 35.0% | |
| ! | TGAAAATCACATTTTCTCGG+AGG | - | chr5_2:29490709-29490728 | Msa0767010:intron | 35.0% |
| ! | GAAAAGTATATGTGCGTGTT+TGG | + | chr5_2:29490765-29490784 | None:intergenic | 35.0% |
| TTTATCGAAGGTTGAAGAAG+AGG | - | chr5_2:29490977-29490996 | Msa0767010:CDS | 35.0% | |
| ! | TGAGTTGAACTGATGTTTGA+GGG | - | chr5_2:29491191-29491210 | Msa0767010:intron | 35.0% |
| CTTTCCTCCATATAATCTGT+TGG | - | chr5_2:29491272-29491291 | Msa0767010:intron | 35.0% | |
| AAGCTGACCAACAGATTATA+TGG | + | chr5_2:29491282-29491301 | None:intergenic | 35.0% | |
| GGCTGAATATCTCATAAATG+TGG | - | chr5_2:29491581-29491600 | Msa0767010:intron | 35.0% | |
| TAGAGCTATAATCGTAGGAA+TGG | - | chr5_2:29491699-29491718 | Msa0767010:intron | 35.0% | |
| TATGCAGTGAATCAAGTTCA+TGG | - | chr5_2:29491728-29491747 | Msa0767010:intron | 35.0% | |
| GAAAAAGGGAAACCAATCAA+AGG | + | chr5_2:29492137-29492156 | None:intergenic | 35.0% | |
| GGTTCAATGGTAAATGTAAC+TGG | + | chr5_2:29492684-29492703 | None:intergenic | 35.0% | |
| ! | TATTACTTTGTTTGCGTTCC+TGG | - | chr5_2:29492713-29492732 | Msa0767010:five_prime_UTR | 35.0% |
| ATGAAGTTCCATGTTGTTCT+TGG | - | chr5_2:29492746-29492765 | Msa0767010:five_prime_UTR | 35.0% | |
| GAAAGAAACCAAGAACAACA+TGG | + | chr5_2:29492757-29492776 | None:intergenic | 35.0% | |
| ATAGATGCACTTACTTTGTC+TGG | + | chr5_2:29492859-29492878 | None:intergenic | 35.0% | |
| GTGCTTTATAACTGTTTCCA+GGG | - | chr5_2:29492924-29492943 | Msa0767010:intron | 35.0% | |
| AGAACAGAAAAGACATGTAG+GGG | + | chr5_2:29492962-29492981 | None:intergenic | 35.0% | |
| ! | GTCTTTTCTGTTCTATGGAA+TGG | - | chr5_2:29492968-29492987 | Msa0767010:intron | 35.0% |
| !! | GCAATGCTCATCACTTTTAT+TGG | - | chr5_2:29493122-29493141 | Msa0767010:intron | 35.0% |
| AAAAATTGGTTGAATCGCGA+TGG | - | chr5_2:29493180-29493199 | Msa0767010:intron | 35.0% | |
| ATCATTGTACAAGCAACAGA+AGG | + | chr5_2:29493240-29493259 | None:intergenic | 35.0% | |
| ! | TTCTGTTGCTTGTACAATGA+TGG | - | chr5_2:29493239-29493258 | Msa0767010:intron | 35.0% |
| GAATGCAATGTGAGTAACAT+TGG | + | chr5_2:29493275-29493294 | None:intergenic | 35.0% | |
| !! | CAGCCTCTATAATTTTAGGA+TGG | + | chr5_2:29493414-29493433 | None:intergenic | 35.0% |
| CATCCTAAAATTATAGAGGC+TGG | - | chr5_2:29493412-29493431 | Msa0767010:five_prime_UTR | 35.0% | |
| ! | AACCCAGCCTCTATAATTTT+AGG | + | chr5_2:29493418-29493437 | None:intergenic | 35.0% |
| TGATTGCATTAACAACCCAA+AGG | + | chr5_2:29493495-29493514 | None:intergenic | 35.0% | |
| !! | AAGATTTCCAAAAGCGTCGA+TGG | + | chr5_2:29489034-29489053 | None:intergenic | 40.0% |
| GATTCACCAAAAATGGTGCA+AGG | - | chr5_2:29489633-29489652 | Msa0767010:CDS | 40.0% | |
| TTGAGCACACTAGTAACATG+TGG | - | chr5_2:29489663-29489682 | Msa0767010:CDS | 40.0% | |
| TCACATATTACATCTGCCAC+TGG | - | chr5_2:29489729-29489748 | Msa0767010:intron | 40.0% | |
| TTCTTTGCCTCGACACAAAA+GGG | + | chr5_2:29489806-29489825 | None:intergenic | 40.0% | |
| GTATTCTATACCAAACCAGG+TGG | - | chr5_2:29490330-29490349 | Msa0767010:intron | 40.0% | |
| TAAACACAATCCACCTGGTT+TGG | + | chr5_2:29490343-29490362 | None:intergenic | 40.0% | |
| ACATCTACTTCAAGTAGGTC+TGG | + | chr5_2:29490366-29490385 | None:intergenic | 40.0% | |
| CACACACATCTACTTCAAGT+AGG | + | chr5_2:29490371-29490390 | None:intergenic | 40.0% | |
| TATGTGCGTGTTTGGGTAAA+TGG | + | chr5_2:29490757-29490776 | None:intergenic | 40.0% | |
| ! | TTCAAGTTATCGAGAGGCTA+GGG | + | chr5_2:29490844-29490863 | None:intergenic | 40.0% |
| ! | ATTCAAGTTATCGAGAGGCT+AGG | + | chr5_2:29490845-29490864 | None:intergenic | 40.0% |
| !! | CATCGATTCAAGTTATCGAG+AGG | + | chr5_2:29490850-29490869 | None:intergenic | 40.0% |
| CTCTCGATAACTTGAATCGA+TGG | - | chr5_2:29490848-29490867 | Msa0767010:intron | 40.0% | |
| TGAATCGATGGCAAGTGTAT+TGG | - | chr5_2:29490860-29490879 | Msa0767010:intron | 40.0% | |
| !! | TCTGGTATTGGAGCATTGAA+TGG | - | chr5_2:29490929-29490948 | Msa0767010:CDS | 40.0% |
| AGTGATTAAGTGTGCGTGTT+TGG | - | chr5_2:29491123-29491142 | Msa0767010:intron | 40.0% | |
| ! | ATTTTCACATTTGGACGCTC+TGG | + | chr5_2:29491168-29491187 | None:intergenic | 40.0% |
| ! | CTGAGTTGAACTGATGTTTG+AGG | - | chr5_2:29491190-29491209 | Msa0767010:intron | 40.0% |
| GAGTTGAACTGATGTTTGAG+GGG | - | chr5_2:29491192-29491211 | Msa0767010:intron | 40.0% | |
| TAAAACAAGCTCACTTGAGC+TGG | - | chr5_2:29491237-29491256 | Msa0767010:intron | 40.0% | |
| CTGACCAACAGATTATATGG+AGG | + | chr5_2:29491279-29491298 | None:intergenic | 40.0% | |
| ATCTGAACTGCAAGCGAAAT+TGG | + | chr5_2:29491325-29491344 | None:intergenic | 40.0% | |
| CGAGAATGAAGATTATGCCT+TGG | - | chr5_2:29491359-29491378 | Msa0767010:CDS | 40.0% | |
| ATCACGTAATTTAGCAGCCA+AGG | + | chr5_2:29491379-29491398 | None:intergenic | 40.0% | |
| ! | AAGAGACTCTGCTTCAAGTT+TGG | + | chr5_2:29491409-29491428 | None:intergenic | 40.0% |
| ! | TTATAGCTCTATAGCCTGCA+CGG | + | chr5_2:29491690-29491709 | None:intergenic | 40.0% |
| GGCTATAGAGCTATAATCGT+AGG | - | chr5_2:29491694-29491713 | Msa0767010:intron | 40.0% | |
| GAACTTGATTCACTGCATAC+TGG | + | chr5_2:29491727-29491746 | None:intergenic | 40.0% | |
| CAGTGAATCAAGTTCATGGA+TGG | - | chr5_2:29491732-29491751 | Msa0767010:intron | 40.0% | |
| CAAGTTAAGAAGTTGTCTCG+TGG | - | chr5_2:29491763-29491782 | Msa0767010:intron | 40.0% | |
| ! | TACCACTCAACCGTTTTATC+AGG | - | chr5_2:29491786-29491805 | Msa0767010:intron | 40.0% |
| AACCTGATAAAACGGTTGAG+TGG | + | chr5_2:29491791-29491810 | None:intergenic | 40.0% | |
| AACCTGCAGAATAGATCATC+AGG | - | chr5_2:29491956-29491975 | Msa0767010:intron | 40.0% | |
| TGTATTCCTCTCAAGGTCTT+AGG | + | chr5_2:29492387-29492406 | None:intergenic | 40.0% | |
| AACTTCATACCACAGAAACC+AGG | + | chr5_2:29492734-29492753 | None:intergenic | 40.0% | |
| ! | CTTACTTTGTCTGGTTTGTC+AGG | + | chr5_2:29492850-29492869 | None:intergenic | 40.0% |
| GGTGCTTTATAACTGTTTCC+AGG | - | chr5_2:29492923-29492942 | Msa0767010:intron | 40.0% | |
| ! | TTCTATGGAATGGATTCAGC+TGG | - | chr5_2:29492978-29492997 | Msa0767010:intron | 40.0% |
| TCATCCCTATTAAGCAACTG+CGG | - | chr5_2:29493006-29493025 | Msa0767010:intron | 40.0% | |
| GCGATGGTGAAAAGTAGAAA+AGG | - | chr5_2:29493196-29493215 | Msa0767010:intron | 40.0% | |
| ATGTGAGTAACATTGGAGAG+AGG | + | chr5_2:29493268-29493287 | None:intergenic | 40.0% | |
| TACAGACATATGATGAAGGC+AGG | + | chr5_2:29493357-29493376 | None:intergenic | 40.0% | |
| TACCACCTATCATCTTCCTT+TGG | - | chr5_2:29493476-29493495 | Msa0767010:five_prime_UTR | 40.0% | |
| ACCACCTATCATCTTCCTTT+GGG | - | chr5_2:29493477-29493496 | Msa0767010:five_prime_UTR | 40.0% | |
| ACAACCCAAAGGAAGATGAT+AGG | + | chr5_2:29493484-29493503 | None:intergenic | 40.0% | |
| TGGTATGTAACGCCTACATG+CGG | + | chr5_2:29489459-29489478 | None:intergenic | 45.0% | |
| ! | GACACACCTTGCACCATTTT+TGG | + | chr5_2:29489642-29489661 | None:intergenic | 45.0% |
| ATCTGCCACTGGAAAACACT+TGG | - | chr5_2:29489740-29489759 | Msa0767010:intron | 45.0% | |
| ! | CCAAACCAAGTGTTTTCCAG+TGG | + | chr5_2:29489748-29489767 | None:intergenic | 45.0% |
| CCACTGGAAAACACTTGGTT+TGG | - | chr5_2:29489745-29489764 | Msa0767010:intron | 45.0% | |
| CTTCTTTGCCTCGACACAAA+AGG | + | chr5_2:29489807-29489826 | None:intergenic | 45.0% | |
| !!! | GTTTTAAGGTTGAAGCGGGA+TGG | - | chr5_2:29489829-29489848 | Msa0767010:intron | 45.0% |
| TAGAGGTGGAGAACAAGAGT+TGG | - | chr5_2:29489857-29489876 | Msa0767010:intron | 45.0% | |
| TGCAAGAAAATACGGCTGTG+CGG | - | chr5_2:29490040-29490059 | Msa0767010:intron | 45.0% | |
| GCTGCGAAACAAACTTACTG+AGG | - | chr5_2:29490277-29490296 | Msa0767010:intron | 45.0% | |
| TCTGGTAAACACAATCCACC+TGG | + | chr5_2:29490348-29490367 | None:intergenic | 45.0% | |
| TGCGTGTTTGGGTAAATGGT+GGG | + | chr5_2:29490753-29490772 | None:intergenic | 45.0% | |
| ! | TCGATGGCAAGTGTATTGGT+CGG | - | chr5_2:29490864-29490883 | Msa0767010:intron | 45.0% |
| GTGCGTGTTTGGTTATGCAT+TGG | - | chr5_2:29491134-29491153 | Msa0767010:intron | 45.0% | |
| TGAACTGATGTTTGAGGGGT+TGG | - | chr5_2:29491196-29491215 | Msa0767010:intron | 45.0% | |
| TGCTGCATCAGCTAAAGCTT+TGG | - | chr5_2:29491428-29491447 | Msa0767010:intron | 45.0% | |
| TGCACAATATGTCTTCCGCT+TGG | - | chr5_2:29491461-29491480 | Msa0767010:intron | 45.0% | |
| GCACAATATGTCTTCCGCTT+GGG | - | chr5_2:29491462-29491481 | Msa0767010:intron | 45.0% | |
| CACAATATGTCTTCCGCTTG+GGG | - | chr5_2:29491463-29491482 | Msa0767010:intron | 45.0% | |
| TGCCTGATGATCTATTCTGC+AGG | + | chr5_2:29491961-29491980 | None:intergenic | 45.0% | |
| TACTGAACCAGATCTACTGG+TGG | - | chr5_2:29492184-29492203 | Msa0767010:CDS | 45.0% | |
| CTGGATTACTAAGCCCTGTT+TGG | - | chr5_2:29492219-29492238 | Msa0767010:exon | 45.0% | |
| ! | ATTCTCCCTGGTGCCAATTT+CGG | + | chr5_2:29492360-29492379 | None:intergenic | 45.0% |
| ATCGAACCTAAGACCTTGAG+AGG | - | chr5_2:29492378-29492397 | Msa0767010:five_prime_UTR | 45.0% | |
| CTTGGACTGTATTCCTCTCA+AGG | + | chr5_2:29492394-29492413 | None:intergenic | 45.0% | |
| CTTGAGAGGAATACAGTCCA+AGG | - | chr5_2:29492392-29492411 | Msa0767010:five_prime_UTR | 45.0% | |
| !! | AACAGTTTGACTTGGGACCT+TGG | + | chr5_2:29492412-29492431 | None:intergenic | 45.0% |
| CTCTGCAACTGCAAAAGAGA+AGG | + | chr5_2:29492812-29492831 | None:intergenic | 45.0% | |
| ! | CTTCTCTTTTGCAGTTGCAG+AGG | - | chr5_2:29492810-29492829 | Msa0767010:five_prime_UTR | 45.0% |
| CATCCCTATTAAGCAACTGC+GGG | - | chr5_2:29493007-29493026 | Msa0767010:intron | 45.0% | |
| TCTCCCGCAGTTGCTTAATA+GGG | + | chr5_2:29493013-29493032 | None:intergenic | 45.0% | |
| TTCTCCCGCAGTTGCTTAAT+AGG | + | chr5_2:29493014-29493033 | None:intergenic | 45.0% | |
| ACCCAAAGGAAGATGATAGG+TGG | + | chr5_2:29493481-29493500 | None:intergenic | 45.0% | |
| GGTATGTAACGCCTACATGC+GGG | + | chr5_2:29489458-29489477 | None:intergenic | 50.0% | |
| ! | TTGGGTACCCTTTTGTGTCG+AGG | - | chr5_2:29489796-29489815 | Msa0767010:intron | 50.0% |
| GAAGCGGGATGGATGTTTAG+AGG | - | chr5_2:29489840-29489859 | Msa0767010:intron | 50.0% | |
| ! | GGATTTAGCCACAAGAGTGC+AGG | - | chr5_2:29489941-29489960 | Msa0767010:intron | 50.0% |
| GCGTGTTTGGGTAAATGGTG+GGG | + | chr5_2:29490752-29490771 | None:intergenic | 50.0% | |
| GTGCGTGTTTGGGTAAATGG+TGG | + | chr5_2:29490754-29490773 | None:intergenic | 50.0% | |
| GAGAGGCTAGGGTCATACAA+GGG | + | chr5_2:29490833-29490852 | None:intergenic | 50.0% | |
| GCTTTACTTTCTGCCCCAAG+CGG | + | chr5_2:29491479-29491498 | None:intergenic | 50.0% | |
| GCGTACTGAACCAGATCTAC+TGG | - | chr5_2:29492181-29492200 | Msa0767010:CDS | 50.0% | |
| CCATATGCCACCAGTAGATC+TGG | + | chr5_2:29492194-29492213 | None:intergenic | 50.0% | |
| CCAGATCTACTGGTGGCATA+TGG | - | chr5_2:29492191-29492210 | Msa0767010:CDS | 50.0% | |
| CTGGTGGCATATGGTAAAGC+TGG | - | chr5_2:29492200-29492219 | Msa0767010:CDS | 50.0% | |
| !! | CCAATTTCGGTGGGCTAGTT+TGG | + | chr5_2:29492347-29492366 | None:intergenic | 50.0% |
| CCAAACTAGCCCACCGAAAT+TGG | - | chr5_2:29492344-29492363 | Msa0767010:five_prime_UTR | 50.0% | |
| GTCTTAGGTTCGATTCTCCC+TGG | + | chr5_2:29492372-29492391 | None:intergenic | 50.0% | |
| GTTTGCGTTCCTGGTTTCTG+TGG | - | chr5_2:29492722-29492741 | Msa0767010:five_prime_UTR | 50.0% | |
| AGGGGTGATCAAATCTTCCC+TGG | + | chr5_2:29492944-29492963 | None:intergenic | 50.0% | |
| !! | TCAAAGGGTATTTCGTGGCG+CGG | + | chr5_2:29493047-29493066 | None:intergenic | 50.0% |
| !! | GTGGGTCAAAGGGTATTTCG+TGG | + | chr5_2:29493052-29493071 | None:intergenic | 50.0% |
| ! | TCGTCACTTGGTGGGTCAAA+GGG | + | chr5_2:29493062-29493081 | None:intergenic | 50.0% |
| ! | TTCGTCACTTGGTGGGTCAA+AGG | + | chr5_2:29493063-29493082 | None:intergenic | 50.0% |
| CTCCATCTTCGTCACTTGGT+GGG | + | chr5_2:29493070-29493089 | None:intergenic | 50.0% | |
| CACCAAGTGACGAAGATGGA+GGG | - | chr5_2:29493069-29493088 | Msa0767010:intron | 50.0% | |
| TTCCCTCCATCTTCGTCACT+TGG | + | chr5_2:29493074-29493093 | None:intergenic | 50.0% | |
| !! | GCAACAGAAGGAGTGCTTTC+TGG | + | chr5_2:29493228-29493247 | None:intergenic | 50.0% |
| ! | TGGGAAGCCATCGACGCTTT+TGG | - | chr5_2:29489024-29489043 | Msa0767010:three_prime_UTR | 55.0% |
| GCGGGATGGATGTTTAGAGG+TGG | - | chr5_2:29489843-29489862 | Msa0767010:intron | 55.0% | |
| CAGCTACACCTGCACTCTTG+TGG | + | chr5_2:29489952-29489971 | None:intergenic | 55.0% | |
| CGGCTGTGCGGTTGAAATTG+TGG | - | chr5_2:29490052-29490071 | Msa0767010:intron | 55.0% | |
| TTGTGGTCGCAACGCTGATG+TGG | - | chr5_2:29490069-29490088 | Msa0767010:intron | 55.0% | |
| CGAGAGGCTAGGGTCATACA+AGG | + | chr5_2:29490834-29490853 | None:intergenic | 55.0% | |
| GATTCCTCGATGTACCGTGC+AGG | - | chr5_2:29491673-29491692 | Msa0767010:intron | 55.0% | |
| ATAGCCTGCACGGTACATCG+AGG | + | chr5_2:29491680-29491699 | None:intergenic | 55.0% | |
| ! | TCCCTGGTGCCAATTTCGGT+GGG | + | chr5_2:29492356-29492375 | None:intergenic | 55.0% |
| GACCCACCAAGTGACGAAGA+TGG | - | chr5_2:29493065-29493084 | Msa0767010:intron | 55.0% | |
| CCTCCATCTTCGTCACTTGG+TGG | + | chr5_2:29493071-29493090 | None:intergenic | 55.0% | |
| CCACCAAGTGACGAAGATGG+AGG | - | chr5_2:29493068-29493087 | Msa0767010:intron | 55.0% | |
| AGCCCACCGAAATTGGCACC+AGG | - | chr5_2:29492351-29492370 | Msa0767010:five_prime_UTR | 60.0% | |
| GCCCACCGAAATTGGCACCA+GGG | - | chr5_2:29492352-29492371 | Msa0767010:five_prime_UTR | 60.0% | |
| ! | CTCCCTGGTGCCAATTTCGG+TGG | + | chr5_2:29492357-29492376 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 29488901 | 29493518 | 29488901 | ID=Msa0767010;Name=Msa0767010 |
| chr5_2 | mRNA | 29488901 | 29493518 | 29488901 | ID=Msa0767010-mRNA-1;Parent=Msa0767010;Name=Msa0767010-mRNA-1;_AED=0.10;_eAED=0.10;_QI=820|0.85|0.87|1|0.57|0.37|8|361|274 |
| chr5_2 | exon | 29488901 | 29489129 | 29488901 | ID=Msa0767010-mRNA-1:exon:11278;Parent=Msa0767010-mRNA-1 |
| chr5_2 | exon | 29489187 | 29489474 | 29489187 | ID=Msa0767010-mRNA-1:exon:11277;Parent=Msa0767010-mRNA-1 |
| chr5_2 | exon | 29489555 | 29489734 | 29489555 | ID=Msa0767010-mRNA-1:exon:11276;Parent=Msa0767010-mRNA-1 |
| chr5_2 | exon | 29490612 | 29490724 | 29490612 | ID=Msa0767010-mRNA-1:exon:11275;Parent=Msa0767010-mRNA-1 |
| chr5_2 | exon | 29490909 | 29491081 | 29490909 | ID=Msa0767010-mRNA-1:exon:11274;Parent=Msa0767010-mRNA-1 |
| chr5_2 | exon | 29491338 | 29491432 | 29491338 | ID=Msa0767010-mRNA-1:exon:11273;Parent=Msa0767010-mRNA-1 |
| chr5_2 | exon | 29492121 | 29492854 | 29492121 | ID=Msa0767010-mRNA-1:exon:11272;Parent=Msa0767010-mRNA-1 |
| chr5_2 | exon | 29493325 | 29493518 | 29493325 | ID=Msa0767010-mRNA-1:exon:11271;Parent=Msa0767010-mRNA-1 |
| chr5_2 | five_prime_UTR | 29493325 | 29493518 | 29493325 | ID=Msa0767010-mRNA-1:five_prime_utr;Parent=Msa0767010-mRNA-1 |
| chr5_2 | five_prime_UTR | 29492229 | 29492854 | 29492229 | ID=Msa0767010-mRNA-1:five_prime_utr;Parent=Msa0767010-mRNA-1 |
| chr5_2 | CDS | 29492121 | 29492228 | 29492121 | ID=Msa0767010-mRNA-1:cds;Parent=Msa0767010-mRNA-1 |
| chr5_2 | CDS | 29491338 | 29491432 | 29491338 | ID=Msa0767010-mRNA-1:cds;Parent=Msa0767010-mRNA-1 |
| chr5_2 | CDS | 29490909 | 29491081 | 29490909 | ID=Msa0767010-mRNA-1:cds;Parent=Msa0767010-mRNA-1 |
| chr5_2 | CDS | 29490612 | 29490724 | 29490612 | ID=Msa0767010-mRNA-1:cds;Parent=Msa0767010-mRNA-1 |
| chr5_2 | CDS | 29489555 | 29489734 | 29489555 | ID=Msa0767010-mRNA-1:cds;Parent=Msa0767010-mRNA-1 |
| chr5_2 | CDS | 29489319 | 29489474 | 29489319 | ID=Msa0767010-mRNA-1:cds;Parent=Msa0767010-mRNA-1 |
| chr5_2 | three_prime_UTR | 29489187 | 29489318 | 29489187 | ID=Msa0767010-mRNA-1:three_prime_utr;Parent=Msa0767010-mRNA-1 |
| chr5_2 | three_prime_UTR | 29488901 | 29489129 | 29488901 | ID=Msa0767010-mRNA-1:three_prime_utr;Parent=Msa0767010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
