AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1032790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032790 MtrunA17_Chr7g0255141 99.355 310 2 0 16 325 94 403 0.0 648
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032790 AT3G56940.1 91.613 310 26 0 16 325 100 409 0.0 604
Msa1032790 AT3G56940.2 91.613 310 26 0 16 325 23 332 0.0 602

Find 68 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAGGAACAAGGAGTTTA+AGG 0.155204 7_1:+67908387 Msa1032790:CDS
ACATATTTGTCTGAGAAAAT+TGG 0.198268 7_1:+67909345 Msa1032790:CDS
TGTAGCATAGAAAATAAATT+TGG 0.215744 7_1:-67909325 None:intergenic
GGGTTTATCTGATTTCAATT+TGG 0.291421 7_1:+67909251 Msa1032790:CDS
TTGTTTGAGATGTCTGTATA+TGG 0.316017 7_1:-67909385 None:intergenic
CACCAATAGCAAGAATCTTC+TGG 0.328187 7_1:-67910376 None:intergenic
TGCCCTGGTGTCTGAGCTCT+TGG 0.335522 7_1:+67910451 Msa1032790:CDS
TCCAACTTTCGCTTGAACTC+TGG 0.344701 7_1:-67910335 None:intergenic
AACCAGAAGATTCTTGCTAT+TGG 0.362875 7_1:+67910374 Msa1032790:CDS
CAGTAGTGAAGAACTTTAAG+AGG 0.381376 7_1:+67910414 Msa1032790:CDS
TTTCAATTTGGCATTGGACT+TGG 0.383087 7_1:+67909263 Msa1032790:CDS
ACAGATTTCTATGAAGGAAT+TGG 0.383574 7_1:+67910051 Msa1032790:CDS
AGATTTCCCCGAGTTTGAAC+GGG 0.384488 7_1:+67910511 Msa1032790:CDS
CTCCATGCCTGTTCTCATCT+TGG 0.390251 7_1:-67909458 None:intergenic
TCTTGTACTGCTGAATTCTC+TGG 0.393467 7_1:+67908469 Msa1032790:CDS
TGTAAATGTCAATGCTAAAC+AGG 0.398958 7_1:+67907285 Msa1032790:CDS
GTAGCATAGAAAATAAATTT+GGG 0.422678 7_1:-67909324 None:intergenic
TTCTCAACATCAAGTACAGC+TGG 0.440375 7_1:-67910311 None:intergenic
TCTACGGATCCTGACTCAAT+TGG 0.440457 7_1:-67910491 None:intergenic
TGTCTGAGAAAATTGGATAC+TGG 0.442138 7_1:+67909352 Msa1032790:CDS
AGAGCTTGGAAGGAGGCTTA+AGG 0.444337 7_1:+67908507 Msa1032790:CDS
GTCTCGCTTCTTCTGTCTAT+CGG 0.446676 7_1:+67909545 Msa1032790:CDS
GGAAAATCCTCGCAGTTGTT+CGG 0.448271 7_1:-67910289 None:intergenic
TTCAATTTGGCATTGGACTT+GGG 0.448463 7_1:+67909264 Msa1032790:CDS
ATCTGATTTCAATTTGGCAT+TGG 0.448946 7_1:+67909257 Msa1032790:CDS
TTTCTTCTTTACAAAGAGCT+TGG 0.457238 7_1:+67908493 Msa1032790:CDS
CAACGCACAGATTTCTATGA+AGG 0.458953 7_1:+67910045 Msa1032790:CDS
GAAGCTGCTGATAAACTTGA+TGG 0.462581 7_1:+67908409 Msa1032790:CDS
ACTGGTGCCAAGATGAGAAC+AGG 0.463603 7_1:+67909451 Msa1032790:CDS
GAGAAAATCTCAGCCACCAC+AGG 0.468845 7_1:-67908999 None:intergenic
TGACATGCATGTCATAATTG+AGG 0.472656 7_1:+67910092 Msa1032790:CDS
GACACCAGGGCAGCAATTAG+TGG 0.475845 7_1:-67910440 None:intergenic
TTCTTTACAAAGAGCTTGGA+AGG 0.481464 7_1:+67908497 Msa1032790:CDS
CAGCCAAGAGCTCAGACACC+AGG 0.485992 7_1:-67910454 None:intergenic
AGGGATGAAGCTAGGCATGC+AGG 0.486460 7_1:+67909032 Msa1032790:CDS
TCAACAAAGATCTGTCTAAG+AGG 0.488967 7_1:-67908433 None:intergenic
CTGATGAAACCAATTGAGTC+AGG 0.490154 7_1:+67910482 Msa1032790:CDS
AGCCACAATTTCTCAATGAC+TGG 0.497869 7_1:+67909508 Msa1032790:CDS
TAGATTTCCCCGAGTTTGAA+CGG 0.508881 7_1:+67910510 Msa1032790:CDS
TCCAGAGTTCAAGCGAAAGT+TGG 0.509862 7_1:+67910334 Msa1032790:CDS
TTCAAACTCGGGGAAATCTA+CGG 0.515786 7_1:-67910507 None:intergenic
GATTCCACTAATTGCTGCCC+TGG 0.521204 7_1:+67910436 Msa1032790:CDS
TTCCAGTCATTGAGAAATTG+TGG 0.534558 7_1:-67909510 None:intergenic
TCTGGTTTATCACCACCATC+CGG 0.544659 7_1:-67910358 None:intergenic
CAAGCGAAAGTTGGACCGGA+TGG 0.565023 7_1:+67910343 Msa1032790:CDS
TGATGTCCAGGGATGAAGCT+AGG 0.568865 7_1:+67909024 Msa1032790:CDS
GGGATGAAGCTAGGCATGCA+GGG 0.570218 7_1:+67909033 Msa1032790:CDS
AATCTCAGCCACCACAGGGT+TGG 0.573147 7_1:-67908994 None:intergenic
TGCATGCCTAGCTTCATCCC+TGG 0.573968 7_1:-67909030 None:intergenic
AGTTCAAGCGAAAGTTGGAC+CGG 0.578756 7_1:+67910339 Msa1032790:CDS
TCTTTGTTGAGTTTCTTGAG+AGG 0.592113 7_1:+67908446 Msa1032790:CDS
AGCCAAGAGCTCAGACACCA+GGG 0.597779 7_1:-67910453 None:intergenic
TGCCAAGATGAGAACAGGCA+TGG 0.599459 7_1:+67909456 Msa1032790:CDS
ACAATTTCTCAATGACTGGA+AGG 0.599992 7_1:+67909512 Msa1032790:CDS
GCGAAAGTTGGACCGGATGG+TGG 0.602636 7_1:+67910346 Msa1032790:CDS
GATTTCCCCGAGTTTGAACG+GGG 0.602852 7_1:+67910512 Msa1032790:CDS
CAACAAAGATCTGTCTAAGA+GGG 0.606400 7_1:-67908432 None:intergenic
TTGACAATCATTCAGATACA+TGG 0.607400 7_1:-67910025 None:intergenic
ATGGGATAACATTGGTACTG+AGG 0.630813 7_1:-67909411 None:intergenic
GGACTTGGGATTCTTGACAA+AGG 0.631481 7_1:+67909278 Msa1032790:CDS
TTTACAAAGAGCTTGGAAGG+AGG 0.638627 7_1:+67908500 Msa1032790:CDS
TCTCAACATCAAGTACAGCT+GGG 0.645846 7_1:-67910310 None:intergenic
AGAAAATCTCAGCCACCACA+GGG 0.658199 7_1:-67908998 None:intergenic
GCAGAAAACCAACCCTGTGG+TGG 0.678370 7_1:+67908986 Msa1032790:intron
ATGACTGGAAGGCTAAGTTG+TGG 0.703656 7_1:+67909523 Msa1032790:CDS
AGACAAACCGAACAACTGCG+AGG 0.761394 7_1:+67910282 Msa1032790:intron
ATTTCCCCGAGTTTGAACGG+GGG 0.763129 7_1:+67910513 Msa1032790:CDS
ATGGCAGAAAACCAACCCTG+TGG 0.808273 7_1:+67908983 Msa1032790:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAATATTAATAATTTC+AGG + chr7_1:67908688-67908707 Msa1032790:intron 10.0%
!! TTGAAATATTAATAATTTCA+GGG + chr7_1:67908689-67908708 Msa1032790:intron 10.0%
!! ATCTATAATAGTAATGAAAA+AGG + chr7_1:67907830-67907849 Msa1032790:intron 15.0%
!!! TTTTTTTTTTTTTGTTGCAT+TGG - chr7_1:67907908-67907927 None:intergenic 15.0%
!!! AAGCTAATAAATTTTGAAAT+AGG + chr7_1:67908628-67908647 Msa1032790:intron 15.0%
!! AAAAGAATATACATTAGTTA+CGG + chr7_1:67909163-67909182 Msa1032790:intron 15.0%
!! GTTATTTATAATCATGTACA+CGG + chr7_1:67907307-67907326 Msa1032790:intron 20.0%
!! TTAATTGATATTACAACGAT+TGG + chr7_1:67907345-67907364 Msa1032790:intron 20.0%
!!! TTTTTTGTGATTAAGTAATG+TGG - chr7_1:67907443-67907462 None:intergenic 20.0%
!! GCTGTAATAGTTTATATAAA+AGG - chr7_1:67907647-67907666 None:intergenic 20.0%
!!! TTCCTAGTTTGTTTTAATTT+GGG - chr7_1:67908162-67908181 None:intergenic 20.0%
!! ATTGTAAATTTGCAATTTCA+AGG + chr7_1:67908660-67908679 Msa1032790:intron 20.0%
!! TTGTAAATTTGCAATTTCAA+GGG + chr7_1:67908661-67908680 Msa1032790:intron 20.0%
!!! TATTCTTTTGATTTATATGC+AGG + chr7_1:67909217-67909236 Msa1032790:intron 20.0%
!! GTAGCATAGAAAATAAATTT+GGG - chr7_1:67909327-67909346 None:intergenic 20.0%
!! TGTAGCATAGAAAATAAATT+TGG - chr7_1:67909328-67909347 None:intergenic 20.0%
!!! TTCTCAAAGTACTTAAAAAT+GGG - chr7_1:67909432-67909451 None:intergenic 20.0%
!! TTTCAACTTAAGAAACTTAA+AGG - chr7_1:67909608-67909627 None:intergenic 20.0%
!!! TTGATAACTATGTTTAAGTA+GGG - chr7_1:67909982-67910001 None:intergenic 20.0%
!!! TTTGATAACTATGTTTAAGT+AGG - chr7_1:67909983-67910002 None:intergenic 20.0%
! ATCAAATTGTAGAAGTTTGA+GGG - chr7_1:67907507-67907526 None:intergenic 25.0%
! AATCAAATTGTAGAAGTTTG+AGG - chr7_1:67907508-67907527 None:intergenic 25.0%
! CAAACTTCTACAATTTGATT+AGG + chr7_1:67907508-67907527 Msa1032790:intron 25.0%
! TATATAAACTATTACAGCCT+TGG + chr7_1:67907649-67907668 Msa1032790:intron 25.0%
! CATTACTATTATAGATTGCA+AGG - chr7_1:67907826-67907845 None:intergenic 25.0%
! AATGAAAAAGGATGTTAGAA+TGG + chr7_1:67907842-67907861 Msa1032790:intron 25.0%
! ATGGAAGAATATGTATGTTA+TGG + chr7_1:67907861-67907880 Msa1032790:intron 25.0%
! GTTATGGAAATCATAGTATA+AGG + chr7_1:67907877-67907896 Msa1032790:intron 25.0%
! CTTCTGCTTAAATTTGATAA+TGG - chr7_1:67907949-67907968 None:intergenic 25.0%
! AACCCAAATTAAAACAAACT+AGG + chr7_1:67908157-67908176 Msa1032790:intron 25.0%
!!! CTTCCTAGTTTGTTTTAATT+TGG - chr7_1:67908163-67908182 None:intergenic 25.0%
!! ACAATCAAACTCATTTTGTT+AGG + chr7_1:67908371-67908390 Msa1032790:CDS 25.0%
! AAATCATAGATTTAGCAACT+TGG + chr7_1:67908599-67908618 Msa1032790:intron 25.0%
!!! CAGTTCTTTGAACTTTTTTT+TGG + chr7_1:67908748-67908767 Msa1032790:intron 25.0%
! TTTGGTCTGAATAGTATATT+TGG + chr7_1:67908766-67908785 Msa1032790:intron 25.0%
! TTGGTCTGAATAGTATATTT+GGG + chr7_1:67908767-67908786 Msa1032790:intron 25.0%
!! TATATGCAGGTTTTTGAATA+AGG + chr7_1:67909230-67909249 Msa1032790:intron 25.0%
!! ATATGCAGGTTTTTGAATAA+GGG + chr7_1:67909231-67909250 Msa1032790:intron 25.0%
! ACATATTTGTCTGAGAAAAT+TGG + chr7_1:67909345-67909364 Msa1032790:CDS 25.0%
! ACTTAAAAATGGGATAACAT+TGG - chr7_1:67909422-67909441 None:intergenic 25.0%
!! GTTCTCAAAGTACTTAAAAA+TGG - chr7_1:67909433-67909452 None:intergenic 25.0%
!!! TTTTTAAGTACTTTGAGAAC+TGG + chr7_1:67909433-67909452 Msa1032790:CDS 25.0%
! TCTCTGTCAAATTAAAGTAA+TGG + chr7_1:67910143-67910162 Msa1032790:intron 25.0%
! AGTTACTGTTATAAACACTT+AGG + chr7_1:67910173-67910192 Msa1032790:intron 25.0%
TGTAAATGTCAATGCTAAAC+AGG + chr7_1:67907285-67907304 Msa1032790:CDS 30.0%
TGAAGTTATGATACAACAGT+TGG + chr7_1:67907556-67907575 Msa1032790:intron 30.0%
GAAGTTATGATACAACAGTT+GGG + chr7_1:67907557-67907576 Msa1032790:intron 30.0%
AAGAGTTATCCTTTATACCA+AGG - chr7_1:67907669-67907688 None:intergenic 30.0%
! TTATTTTCTGTTGTAGCTCA+TGG - chr7_1:67908042-67908061 None:intergenic 30.0%
GAAAATAACCGGTGAAATAA+AGG + chr7_1:67908054-67908073 Msa1032790:intron 30.0%
! ATTTGACTATGAAGAGCTTT+TGG - chr7_1:67908081-67908100 None:intergenic 30.0%
! AACTCATTTTGTTAGGAACA+AGG + chr7_1:67908378-67908397 Msa1032790:CDS 30.0%
TTTCTTCTTTACAAAGAGCT+TGG + chr7_1:67908493-67908512 Msa1032790:CDS 30.0%
GCTAAATTGAATGCTGAATA+AGG - chr7_1:67908563-67908582 None:intergenic 30.0%
! AACTCATAGTACTAGGATTT+TGG + chr7_1:67908836-67908855 Msa1032790:intron 30.0%
TCATTGTCTGATATATTGCA+TGG + chr7_1:67908952-67908971 Msa1032790:intron 30.0%
CATTGTCTGATATATTGCAT+GGG + chr7_1:67908953-67908972 Msa1032790:intron 30.0%
ATATTGCATGGGATTTGAAA+TGG + chr7_1:67908964-67908983 Msa1032790:intron 30.0%
! GATTAAGAAGTAAAAGCACA+AGG - chr7_1:67909069-67909088 None:intergenic 30.0%
CATATAGTGATATAGACAAG+TGG - chr7_1:67909101-67909120 None:intergenic 30.0%
GGGTTTATCTGATTTCAATT+TGG + chr7_1:67909251-67909270 Msa1032790:CDS 30.0%
ATCTGATTTCAATTTGGCAT+TGG + chr7_1:67909257-67909276 Msa1032790:CDS 30.0%
! TTGTTTGAGATGTCTGTATA+TGG - chr7_1:67909388-67909407 None:intergenic 30.0%
CAAGAAAAATGTGATCTCTT+TGG - chr7_1:67909920-67909939 None:intergenic 30.0%
TAATGACCACAAACTCATAA+TGG - chr7_1:67909947-67909966 None:intergenic 30.0%
AGTTATCAAATTTGTGTTGC+AGG + chr7_1:67909993-67910012 Msa1032790:intron 30.0%
TTGACAATCATTCAGATACA+TGG - chr7_1:67910028-67910047 None:intergenic 30.0%
ACAGATTTCTATGAAGGAAT+TGG + chr7_1:67910051-67910070 Msa1032790:CDS 30.0%
! AGTTACTCAAGCTTCATTTT+GGG + chr7_1:67910249-67910268 Msa1032790:intron 30.0%
GGTCAGTATGTATAGTTCAA+AGG + chr7_1:67907529-67907548 Msa1032790:intron 35.0%
CTATTACAGCCTTGGTATAA+AGG + chr7_1:67907657-67907676 Msa1032790:intron 35.0%
GAGCTACAACAGAAAATAAC+CGG + chr7_1:67908043-67908062 Msa1032790:intron 35.0%
!! CTTTTGGACCTTTATTTCAC+CGG - chr7_1:67908065-67908084 None:intergenic 35.0%
TTCATCCTGAATCTAGCAAA+AGG - chr7_1:67908217-67908236 None:intergenic 35.0%
TGTTAGGAACAAGGAGTTTA+AGG + chr7_1:67908387-67908406 Msa1032790:CDS 35.0%
CAACAAAGATCTGTCTAAGA+GGG - chr7_1:67908435-67908454 None:intergenic 35.0%
TCAACAAAGATCTGTCTAAG+AGG - chr7_1:67908436-67908455 None:intergenic 35.0%
TCTTTGTTGAGTTTCTTGAG+AGG + chr7_1:67908446-67908465 Msa1032790:CDS 35.0%
TTCTTTACAAAGAGCTTGGA+AGG + chr7_1:67908497-67908516 Msa1032790:CDS 35.0%
TGATTGCAACTCATAGTACT+AGG + chr7_1:67908829-67908848 Msa1032790:intron 35.0%
TAGTGATATAGACAAGTGGA+AGG - chr7_1:67909097-67909116 None:intergenic 35.0%
! TTTCAATTTGGCATTGGACT+TGG + chr7_1:67909263-67909282 Msa1032790:CDS 35.0%
! TTCAATTTGGCATTGGACTT+GGG + chr7_1:67909264-67909283 Msa1032790:CDS 35.0%
TGTCTGAGAAAATTGGATAC+TGG + chr7_1:67909352-67909371 Msa1032790:CDS 35.0%
TTCCAGTCATTGAGAAATTG+TGG - chr7_1:67909513-67909532 None:intergenic 35.0%
ACAATTTCTCAATGACTGGA+AGG + chr7_1:67909512-67909531 Msa1032790:CDS 35.0%
ATATGTAACTCAGCACCAAT+CGG - chr7_1:67909646-67909665 None:intergenic 35.0%
TTGAATCTAACCACATGTGT+CGG - chr7_1:67909769-67909788 None:intergenic 35.0%
GTAAATCTGATTCTGCATGT+TGG - chr7_1:67909874-67909893 None:intergenic 35.0%
ATGCAGAATCAGATTTACCT+TGG + chr7_1:67909876-67909895 Msa1032790:intron 35.0%
AAAAATGTGATCTCTTTGGC+TGG - chr7_1:67909916-67909935 None:intergenic 35.0%
TGTCTTCCATTATGAGTTTG+TGG + chr7_1:67909938-67909957 Msa1032790:intron 35.0%
TGACATGCATGTCATAATTG+AGG + chr7_1:67910092-67910111 Msa1032790:CDS 35.0%
! CAGTTACTCAAGCTTCATTT+TGG + chr7_1:67910248-67910267 Msa1032790:intron 35.0%
! AACCAGAAGATTCTTGCTAT+TGG + chr7_1:67910374-67910393 Msa1032790:CDS 35.0%
CAGTAGTGAAGAACTTTAAG+AGG + chr7_1:67910414-67910433 Msa1032790:CDS 35.0%
TGTTTGTGCTCTCTGATTAG+AGG + chr7_1:67907731-67907750 Msa1032790:intron 40.0%
!! TCTAGCCTTTTGCTAGATTC+AGG + chr7_1:67908209-67908228 Msa1032790:intron 40.0%
GAAGCTGCTGATAAACTTGA+TGG + chr7_1:67908409-67908428 Msa1032790:CDS 40.0%
TCTTGTACTGCTGAATTCTC+TGG + chr7_1:67908469-67908488 Msa1032790:CDS 40.0%
TTTACAAAGAGCTTGGAAGG+AGG + chr7_1:67908500-67908519 Msa1032790:CDS 40.0%
! AGATTTTCTCTCTGATGTCC+AGG + chr7_1:67909012-67909031 Msa1032790:CDS 40.0%
! GATTTTCTCTCTGATGTCCA+GGG + chr7_1:67909013-67909032 Msa1032790:CDS 40.0%
TGATATAGACAAGTGGAAGG+AGG - chr7_1:67909094-67909113 None:intergenic 40.0%
ATTGAGAATCATGCAACGCA+TGG + chr7_1:67909127-67909146 Msa1032790:intron 40.0%
TTGAGAATCATGCAACGCAT+GGG + chr7_1:67909128-67909147 Msa1032790:intron 40.0%
ATGGGATAACATTGGTACTG+AGG - chr7_1:67909414-67909433 None:intergenic 40.0%
AGCCACAATTTCTCAATGAC+TGG + chr7_1:67909508-67909527 Msa1032790:CDS 40.0%
ACCTTAACTGAGAATGCACA+TGG + chr7_1:67909676-67909695 Msa1032790:intron 40.0%
TCCATGTGCATTCTCAGTTA+AGG - chr7_1:67909680-67909699 None:intergenic 40.0%
CTATGTAGCACCAACACTTA+AGG + chr7_1:67909707-67909726 Msa1032790:intron 40.0%
ATGCCTTCAACCTTAAGTGT+TGG - chr7_1:67909720-67909739 None:intergenic 40.0%
TACTTGTTCCGTGTCTTTGT+TGG + chr7_1:67909812-67909831 Msa1032790:intron 40.0%
ACAACCAACCAACAAAGACA+CGG - chr7_1:67909823-67909842 None:intergenic 40.0%
! TCTTTGTTGGTTGGTTGTGT+CGG + chr7_1:67909825-67909844 Msa1032790:intron 40.0%
CAACGCACAGATTTCTATGA+AGG + chr7_1:67910045-67910064 Msa1032790:CDS 40.0%
TCTCAACATCAAGTACAGCT+GGG - chr7_1:67910313-67910332 None:intergenic 40.0%
TTCTCAACATCAAGTACAGC+TGG - chr7_1:67910314-67910333 None:intergenic 40.0%
CACCAATAGCAAGAATCTTC+TGG - chr7_1:67910379-67910398 None:intergenic 40.0%
CTGATGAAACCAATTGAGTC+AGG + chr7_1:67910482-67910501 Msa1032790:CDS 40.0%
TTCAAACTCGGGGAAATCTA+CGG - chr7_1:67910510-67910529 None:intergenic 40.0%
TAGATTTCCCCGAGTTTGAA+CGG + chr7_1:67910510-67910529 Msa1032790:CDS 40.0%
TTGGAAGGAGGCTTAAGGTT+TGG + chr7_1:67908512-67908531 Msa1032790:intron 45.0%
AGAAAATCTCAGCCACCACA+GGG - chr7_1:67909001-67909020 None:intergenic 45.0%
TATAGACAAGTGGAAGGAGG+AGG - chr7_1:67909091-67909110 None:intergenic 45.0%
TGAGAATCATGCAACGCATG+GGG + chr7_1:67909129-67909148 Msa1032790:intron 45.0%
GGACTTGGGATTCTTGACAA+AGG + chr7_1:67909278-67909297 Msa1032790:CDS 45.0%
ATGACTGGAAGGCTAAGTTG+TGG + chr7_1:67909523-67909542 Msa1032790:CDS 45.0%
GTCTCGCTTCTTCTGTCTAT+CGG + chr7_1:67909545-67909564 Msa1032790:CDS 45.0%
CCAATCGGAACTAGCTATTG+AGG - chr7_1:67909631-67909650 None:intergenic 45.0%
CCTCAATAGCTAGTTCCGAT+TGG + chr7_1:67909628-67909647 Msa1032790:intron 45.0%
GCACCAACACTTAAGGTTGA+AGG + chr7_1:67909714-67909733 Msa1032790:intron 45.0%
TGTTCCGTGTCTTTGTTGGT+TGG + chr7_1:67909816-67909835 Msa1032790:intron 45.0%
TGGCATACTAAGGAATGCCA+AGG - chr7_1:67909896-67909915 None:intergenic 45.0%
TCTCTTTGGCTGGCATACTA+AGG - chr7_1:67909906-67909925 None:intergenic 45.0%
GGAAAATCCTCGCAGTTGTT+CGG - chr7_1:67910292-67910311 None:intergenic 45.0%
TCCAGAGTTCAAGCGAAAGT+TGG + chr7_1:67910334-67910353 Msa1032790:CDS 45.0%
TCCAACTTTCGCTTGAACTC+TGG - chr7_1:67910338-67910357 None:intergenic 45.0%
AGTTCAAGCGAAAGTTGGAC+CGG + chr7_1:67910339-67910358 Msa1032790:CDS 45.0%
! TCTGGTTTATCACCACCATC+CGG - chr7_1:67910361-67910380 None:intergenic 45.0%
TCTACGGATCCTGACTCAAT+TGG - chr7_1:67910494-67910513 None:intergenic 45.0%
AGATTTCCCCGAGTTTGAAC+GGG + chr7_1:67910511-67910530 Msa1032790:CDS 45.0%
AGAGCTTGGAAGGAGGCTTA+AGG + chr7_1:67908507-67908526 Msa1032790:CDS 50.0%
ATGGCAGAAAACCAACCCTG+TGG + chr7_1:67908983-67909002 Msa1032790:intron 50.0%
GAGAAAATCTCAGCCACCAC+AGG - chr7_1:67909002-67909021 None:intergenic 50.0%
TGATGTCCAGGGATGAAGCT+AGG + chr7_1:67909024-67909043 Msa1032790:CDS 50.0%
! ACTGGTGCCAAGATGAGAAC+AGG + chr7_1:67909451-67909470 Msa1032790:CDS 50.0%
TGCCAAGATGAGAACAGGCA+TGG + chr7_1:67909456-67909475 Msa1032790:CDS 50.0%
CTCCATGCCTGTTCTCATCT+TGG - chr7_1:67909461-67909480 None:intergenic 50.0%
CTATACGACACCGACACATG+TGG + chr7_1:67909756-67909775 Msa1032790:intron 50.0%
AGACAAACCGAACAACTGCG+AGG + chr7_1:67910282-67910301 Msa1032790:intron 50.0%
GATTCCACTAATTGCTGCCC+TGG + chr7_1:67910436-67910455 Msa1032790:CDS 50.0%
GATTTCCCCGAGTTTGAACG+GGG + chr7_1:67910512-67910531 Msa1032790:CDS 50.0%
ATTTCCCCGAGTTTGAACGG+GGG + chr7_1:67910513-67910532 Msa1032790:CDS 50.0%
GCAGAAAACCAACCCTGTGG+TGG + chr7_1:67908986-67909005 Msa1032790:intron 55.0%
AATCTCAGCCACCACAGGGT+TGG - chr7_1:67908997-67909016 None:intergenic 55.0%
TGCATGCCTAGCTTCATCCC+TGG - chr7_1:67909033-67909052 None:intergenic 55.0%
AGGGATGAAGCTAGGCATGC+AGG + chr7_1:67909032-67909051 Msa1032790:CDS 55.0%
GGGATGAAGCTAGGCATGCA+GGG + chr7_1:67909033-67909052 Msa1032790:CDS 55.0%
GAAGCTAGGCATGCAGGGTA+AGG + chr7_1:67909038-67909057 Msa1032790:intron 55.0%
CAAGCGAAAGTTGGACCGGA+TGG + chr7_1:67910343-67910362 Msa1032790:CDS 55.0%
GACACCAGGGCAGCAATTAG+TGG - chr7_1:67910443-67910462 None:intergenic 55.0%
AGCCAAGAGCTCAGACACCA+GGG - chr7_1:67910456-67910475 None:intergenic 55.0%
ACAAGCCCCCGTTCAAACTC+GGG - chr7_1:67910521-67910540 None:intergenic 55.0%
CACAAGCCCCCGTTCAAACT+CGG - chr7_1:67910522-67910541 None:intergenic 55.0%
GCGAAAGTTGGACCGGATGG+TGG + chr7_1:67910346-67910365 Msa1032790:CDS 60.0%
TGCCCTGGTGTCTGAGCTCT+TGG + chr7_1:67910451-67910470 Msa1032790:CDS 60.0%
CAGCCAAGAGCTCAGACACC+AGG - chr7_1:67910457-67910476 None:intergenic 60.0%
CAAGCCCCCGTTCAAACTCG+GGG - chr7_1:67910520-67910539 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 67907259 67910547 67907259 ID=Msa1032790;Name=Msa1032790
chr7_1 mRNA 67907259 67910547 67907259 ID=Msa1032790-mRNA-1;Parent=Msa1032790;Name=Msa1032790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|0.83|1|0.83|6|0|325
chr7_1 exon 67907259 67907306 67907259 ID=Msa1032790-mRNA-1:exon:15680;Parent=Msa1032790-mRNA-1
chr7_1 exon 67908355 67908528 67908355 ID=Msa1032790-mRNA-1:exon:15681;Parent=Msa1032790-mRNA-1
chr7_1 exon 67908990 67909054 67908990 ID=Msa1032790-mRNA-1:exon:15682;Parent=Msa1032790-mRNA-1
chr7_1 exon 67909239 67909566 67909239 ID=Msa1032790-mRNA-1:exon:15683;Parent=Msa1032790-mRNA-1
chr7_1 exon 67910015 67910113 67910015 ID=Msa1032790-mRNA-1:exon:15684;Parent=Msa1032790-mRNA-1
chr7_1 exon 67910284 67910547 67910284 ID=Msa1032790-mRNA-1:exon:15685;Parent=Msa1032790-mRNA-1
chr7_1 CDS 67907259 67907306 67907259 ID=Msa1032790-mRNA-1:cds;Parent=Msa1032790-mRNA-1
chr7_1 CDS 67908355 67908528 67908355 ID=Msa1032790-mRNA-1:cds;Parent=Msa1032790-mRNA-1
chr7_1 CDS 67908990 67909054 67908990 ID=Msa1032790-mRNA-1:cds;Parent=Msa1032790-mRNA-1
chr7_1 CDS 67909239 67909566 67909239 ID=Msa1032790-mRNA-1:cds;Parent=Msa1032790-mRNA-1
chr7_1 CDS 67910015 67910113 67910015 ID=Msa1032790-mRNA-1:cds;Parent=Msa1032790-mRNA-1
chr7_1 CDS 67910284 67910547 67910284 ID=Msa1032790-mRNA-1:cds;Parent=Msa1032790-mRNA-1
Gene Sequence

>Msa1032790

GATGATTTTGCAAAGGCTGAATTTTCTGTAAATGTCAATGCTAAACAGGAATTCAAAACTGATTACAATCAAACTCATTTTGTTAGGAACAAGGAGTTTAAGGAAGCTGCTGATAAACTTGATGGCCCTCTTAGACAGATCTTTGTTGAGTTTCTTGAGAGGTCTTGTACTGCTGAATTCTCTGGTTTTCTTCTTTACAAAGAGCTTGGAAGGAGGCTTAAGAAAACCAACCCTGTGGTGGCTGAGATTTTCTCTCTGATGTCCAGGGATGAAGCTAGGCATGCAGGGTTTTTGAATAAGGGTTTATCTGATTTCAATTTGGCATTGGACTTGGGATTCTTGACAAAGGCTAGAAAGTACACATTTTTCAAGCCCAAATTTATTTTCTATGCTACATATTTGTCTGAGAAAATTGGATACTGGAGATACATAACCATATACAGACATCTCAAACAAAATCCTCAGTACCAATGTTATCCCATTTTTAAGTACTTTGAGAACTGGTGCCAAGATGAGAACAGGCATGGAGATTTCTTCTCTGCTTTGATGAAAGCACAGCCACAATTTCTCAATGACTGGAAGGCTAAGTTGTGGTCTCGCTTCTTCTGTCTATCGGTTTATGTCACCATGTATCTGAATGATTGTCAACGCACAGATTTCTATGAAGGAATTGGACTTAACACAAAAGAGTTTGACATGCATGTCATAATTGAGACAAACCGAACAACTGCGAGGATTTTCCCAGCTGTACTTGATGTTGAGAATCCAGAGTTCAAGCGAAAGTTGGACCGGATGGTGGTGATAAACCAGAAGATTCTTGCTATTGGTGAGAGTGATGACAATTCAGTAGTGAAGAACTTTAAGAGGATTCCACTAATTGCTGCCCTGGTGTCTGAGCTCTTGGCTGCGTATCTGATGAAACCAATTGAGTCAGGATCCGTAGATTTCCCCGAGTTTGAACGGGGGCTTGTGTACTAA

Protein sequence

>Msa1032790

DDFAKAEFSVNVNAKQEFKTDYNQTHFVRNKEFKEAADKLDGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKQNPQYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTDFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVINQKILAIGESDDNSVVKNFKRIPLIAALVSELLAAYLMKPIESGSVDFPEFERGLVY*