AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1390040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1390040 MtrunA17_Chr4g0013401 77.239 268 26 5 1 233 1 268 2.37e-90 273
Msa1390040 MtrunA17_Chr4g0013401 88.073 218 16 2 26 233 116 333 4.32e-80 246
Msa1390040 MtrunA17_Chr4g0013401 83.628 226 22 1 25 235 140 365 1.91e-77 239
Msa1390040 MtrunA17_Chr4g0013401 86.603 209 28 0 25 233 105 313 3.06e-76 236
Msa1390040 MtrunA17_Chr4g0013401 85.116 215 27 1 26 235 171 385 3.30e-76 236
Msa1390040 MtrunA17_Chr4g0013401 85.915 213 25 1 26 233 161 373 8.66e-75 233
Msa1390040 MtrunA17_Chr4g0013401 83.929 224 21 3 25 233 130 353 1.84e-74 232
Msa1390040 MtrunA17_Chr4g0013401 82.326 215 33 1 26 235 211 425 1.49e-72 227
Msa1390040 MtrunA17_Chr4g0013401 83.568 213 30 1 26 233 201 413 3.50e-72 226
Msa1390040 MtrunA17_Chr4g0013401 81.776 214 34 1 26 234 221 434 6.68e-72 225
Msa1390040 MtrunA17_Chr4g0013401 80.500 200 39 0 25 224 235 434 5.53e-65 207
Msa1390040 MtrunA17_Chr4g0013371 81.203 266 17 1 1 233 1 266 6.29e-88 262
Msa1390040 MtrunA17_Chr4g0013371 91.667 216 13 1 26 236 84 299 8.07e-87 259
Msa1390040 MtrunA17_Chr4g0013371 81.818 66 7 1 25 90 238 298 4.10e-14 70.1
Msa1390040 MtrunA17_Chr4g0013411 70.992 262 46 2 1 232 1 262 9.40e-81 251
Msa1390040 MtrunA17_Chr4g0013411 76.959 217 45 1 24 235 269 485 2.21e-67 217
Msa1390040 MtrunA17_Chr4g0013411 75.664 226 40 3 25 235 220 445 8.70e-67 215
Msa1390040 MtrunA17_Chr4g0013411 75.926 216 47 1 23 233 253 468 1.61e-66 214
Msa1390040 MtrunA17_Chr4g0013411 77.626 219 39 2 25 233 180 398 2.83e-66 214
Msa1390040 MtrunA17_Chr4g0013411 77.315 216 44 1 25 235 110 325 4.10e-66 213
Msa1390040 MtrunA17_Chr4g0013411 76.744 215 45 1 24 233 324 538 4.37e-66 213
Msa1390040 MtrunA17_Chr4g0013411 76.852 216 45 1 23 233 213 428 4.96e-66 213
Msa1390040 MtrunA17_Chr4g0013411 76.712 219 41 2 25 233 190 408 5.70e-66 213
Msa1390040 MtrunA17_Chr4g0013411 77.103 214 44 1 25 233 295 508 6.54e-66 213
Msa1390040 MtrunA17_Chr4g0013411 78.365 208 45 0 25 232 240 447 1.11e-65 212
Msa1390040 MtrunA17_Chr4g0013411 76.636 214 45 1 25 233 335 548 1.14e-65 212
Msa1390040 MtrunA17_Chr4g0013411 76.852 216 45 1 23 233 93 308 1.79e-65 212
Msa1390040 MtrunA17_Chr4g0013411 76.712 219 41 2 25 233 130 348 1.32e-64 209
Msa1390040 MtrunA17_Chr4g0013411 73.820 233 41 4 23 235 153 385 1.34e-64 209
Msa1390040 MtrunA17_Chr4g0013411 76.256 219 42 2 25 233 140 358 3.17e-64 208
Msa1390040 MtrunA17_Chr4g0013411 75.377 199 44 1 26 224 356 549 5.33e-58 192
Msa1390040 MtrunA17_Chr4g0013411 75.000 176 39 1 24 194 374 549 1.29e-50 172
Msa1390040 MtrunA17_Chr4g0013411 71.304 115 33 0 121 235 26 140 7.39e-27 107
Msa1390040 MtrunA17_Chr4g0013411 61.458 96 32 1 9 104 459 549 4.29e-16 77.0
Msa1390040 MtrunA17_Chr4g0013441 78.571 210 45 0 24 233 261 470 1.26e-68 218
Msa1390040 MtrunA17_Chr4g0013441 70.539 241 49 4 15 233 15 255 2.36e-66 212
Msa1390040 MtrunA17_Chr4g0013441 77.033 209 43 1 25 233 277 480 1.18e-64 208
Msa1390040 MtrunA17_Chr4g0013441 73.778 225 47 3 23 235 193 417 5.37e-64 206
Msa1390040 MtrunA17_Chr4g0013441 65.263 95 28 1 9 103 391 480 6.90e-18 82.0
Msa1390040 MtrunA17_Chr4g0013391 65.990 197 15 1 1 145 1 197 2.21e-41 140
Msa1390040 MtrunA17_Chr4g0013391 66.474 173 6 1 116 236 26 198 5.98e-40 136
Msa1390040 MtrunA17_Chr6g0452831 43.396 159 90 0 38 196 69 227 2.59e-33 120
Msa1390040 MtrunA17_Chr6g0452831 43.396 159 90 0 48 206 69 227 4.41e-33 120
Msa1390040 MtrunA17_Chr6g0452831 42.331 163 92 1 24 186 67 227 1.04e-32 119
Msa1390040 MtrunA17_Chr6g0452831 43.396 159 90 0 63 221 69 227 2.83e-32 118
Msa1390040 MtrunA17_Chr6g0452831 43.871 155 87 0 37 191 73 227 7.69e-32 117
Msa1390040 MtrunA17_Chr6g0452831 43.871 155 87 0 62 216 73 227 1.24e-31 116
Msa1390040 MtrunA17_Chr6g0452831 43.871 155 87 0 72 226 73 227 1.44e-31 116
Msa1390040 MtrunA17_Chr6g0452831 44.156 154 86 0 77 230 73 226 1.74e-31 115
Msa1390040 MtrunA17_Chr6g0452831 43.871 155 87 0 57 211 73 227 1.98e-31 115
Msa1390040 MtrunA17_Chr6g0452831 43.506 154 87 0 82 235 73 226 2.40e-31 115
Msa1390040 MtrunA17_Chr6g0452831 42.138 159 92 0 23 181 69 227 2.55e-31 115
Msa1390040 MtrunA17_Chr6g0452831 43.871 155 87 0 47 201 73 227 1.48e-30 113
Msa1390040 MtrunA17_Chr6g0452831 43.357 143 81 0 93 235 69 211 6.07e-28 106
Msa1390040 MtrunA17_Chr4g0013431 63.780 127 38 2 1 124 1 122 1.89e-30 109
Msa1390040 MtrunA17_Chr4g0013431 56.701 97 24 1 146 224 26 122 1.73e-15 70.5
Msa1390040 MtrunA17_Chr4g0013431 60.825 97 25 1 121 204 26 122 3.03e-15 69.7
Msa1390040 MtrunA17_Chr4g0013431 63.265 98 28 1 95 184 25 122 9.99e-15 68.6
Msa1390040 MtrunA17_Chr4g0013431 59.794 97 26 1 111 194 26 122 1.82e-14 67.8
Msa1390040 MtrunA17_Chr4g0013431 56.701 97 24 1 155 233 25 121 6.18e-14 66.2
Msa1390040 MtrunA17_Chr4g0013541 47.321 112 50 3 1 112 1 103 3.66e-17 74.7
Msa1390040 MtrunA17_Chr3g0082981 49.474 95 46 1 1 93 13 107 2.37e-15 70.1
Msa1390040 MtrunA17_Chr4g0013551 43.519 108 40 4 1 99 1 96 1.26e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1390040 AT3G22142.1 51.244 201 98 0 24 224 1101 1301 1.50e-49 174
Msa1390040 AT3G22142.1 50.244 205 102 0 25 229 1097 1301 4.82e-49 172
Msa1390040 AT3G22142.1 50.754 199 98 0 33 231 1100 1298 6.97e-48 169
Msa1390040 AT3G22142.1 47.368 228 104 1 24 235 1065 1292 1.24e-47 168
Msa1390040 AT3G22142.1 50.754 199 98 0 35 233 1097 1295 1.72e-47 168
Msa1390040 AT3G22142.1 48.661 224 99 1 29 236 1050 1273 2.03e-47 168
Msa1390040 AT3G22142.1 46.215 251 94 2 24 233 995 1245 2.24e-47 168
Msa1390040 AT3G22142.1 46.983 232 103 1 24 235 1161 1392 3.69e-47 167
Msa1390040 AT3G22142.1 46.983 232 103 1 24 235 1126 1357 2.26e-46 165
Msa1390040 AT3G22142.1 44.961 258 99 3 21 235 1005 1262 3.66e-46 164
Msa1390040 AT3G22142.1 46.552 232 104 1 24 235 1136 1367 4.48e-46 164
Msa1390040 AT3G22142.1 45.690 232 106 1 24 235 1111 1342 6.04e-46 164
Msa1390040 AT3G22142.1 46.552 232 104 1 24 235 1151 1382 1.98e-45 162
Msa1390040 AT3G22142.1 46.352 233 103 2 21 231 1141 1373 2.47e-45 162
Msa1390040 AT3G22142.1 46.473 241 98 2 24 233 985 1225 5.87e-45 160
Msa1390040 AT3G22142.1 47.032 219 101 1 24 227 1176 1394 9.49e-42 151
Msa1390040 AT3G22142.1 42.537 268 98 3 24 235 880 1147 3.67e-39 144
Msa1390040 AT3G22142.1 40.794 277 98 3 25 235 916 1192 9.25e-39 143
Msa1390040 AT3G22142.1 51.196 209 102 0 24 232 1186 1394 1.32e-38 142
Msa1390040 AT3G22142.1 40.000 275 100 3 26 235 572 846 6.91e-38 140
Msa1390040 AT3G22142.1 40.659 273 101 3 24 235 890 1162 2.48e-37 139
Msa1390040 AT3G22142.1 39.781 274 100 3 27 235 508 781 3.68e-37 138
Msa1390040 AT3G22142.1 39.855 276 101 3 25 235 666 941 1.11e-36 137
Msa1390040 AT3G22142.1 42.802 257 96 3 27 232 908 1164 1.70e-36 136
Msa1390040 AT3G22142.1 45.495 222 101 1 24 225 625 846 2.52e-36 136
Msa1390040 AT3G22142.1 38.971 272 101 3 24 230 510 781 4.00e-36 135
Msa1390040 AT3G22142.1 38.909 275 103 3 26 235 517 791 4.53e-36 135
Msa1390040 AT3G22142.1 40.221 271 102 3 25 235 501 771 4.80e-36 135
Msa1390040 AT3G22142.1 39.416 274 101 3 27 235 673 946 5.23e-36 135
Msa1390040 AT3G22142.1 40.074 272 103 3 24 235 530 801 9.40e-36 134
Msa1390040 AT3G22142.1 38.909 275 103 3 24 233 520 794 9.59e-36 134
Msa1390040 AT3G22142.1 38.909 275 103 3 24 233 640 914 1.15e-35 134
Msa1390040 AT3G22142.1 37.906 277 107 3 24 235 685 961 4.29e-35 132
Msa1390040 AT3G22142.1 38.929 280 101 3 24 233 630 909 5.41e-35 132
Msa1390040 AT3G22142.1 43.902 246 92 3 34 233 875 1120 5.41e-35 132
Msa1390040 AT3G22142.1 38.462 273 103 3 24 231 675 947 7.28e-35 132
Msa1390040 AT3G22142.1 37.979 287 103 3 24 235 735 1021 1.05e-34 131
Msa1390040 AT3G22142.1 37.979 287 103 3 24 235 745 1031 2.04e-34 130
Msa1390040 AT3G22142.1 38.710 279 101 3 27 235 758 1036 3.05e-34 130
Msa1390040 AT3G22142.1 42.692 260 94 3 26 230 822 1081 1.03e-33 128
Msa1390040 AT3G22142.1 38.519 270 91 3 36 230 452 721 2.18e-33 127
Msa1390040 AT3G22142.1 37.868 272 104 3 24 230 695 966 5.08e-33 126
Msa1390040 AT3G22142.1 35.762 302 104 4 24 235 455 756 6.78e-33 126
Msa1390040 AT3G22142.1 36.688 308 99 5 24 235 830 1137 2.68e-32 124
Msa1390040 AT3G22142.1 41.538 260 92 3 36 235 822 1081 5.04e-32 124
Msa1390040 AT3G22142.1 37.710 297 100 4 24 235 415 711 5.19e-32 124
Msa1390040 AT3G22142.1 37.209 301 99 4 25 235 401 701 8.55e-32 123
Msa1390040 AT3G22142.1 38.745 271 104 4 25 235 328 596 2.53e-31 121
Msa1390040 AT3G22142.1 34.385 317 103 4 24 235 375 691 2.75e-29 115
Msa1390040 AT3G22142.1 33.548 310 106 4 24 233 350 659 4.43e-28 112
Msa1390040 AT3G22142.1 34.194 310 104 5 24 233 355 664 4.74e-28 112
Msa1390040 AT3G22142.1 33.333 288 108 7 29 235 247 531 5.75e-22 94.7
Msa1390040 AT3G22142.1 38.528 231 104 3 34 226 202 432 1.02e-20 91.3
Msa1390040 AT3G22142.1 41.256 223 112 4 29 235 202 421 5.78e-16 77.4
Msa1390040 AT1G54970.1 45.918 196 81 9 1 189 3 180 7.46e-22 92.4
Msa1390040 AT1G54970.1 53.548 155 62 7 86 236 29 177 1.70e-19 85.9

Find 92 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGACTGGAGGTTTCTCAAC+TGG 0.297152 tig0021307:-95179 None:intergenic
AACCGGAGGCTTGTCATAAT+TGG 0.298691 tig0021307:-94622 None:intergenic
GTCGAGAAGCCACCAGTTTA+CGG 0.299440 tig0021307:+95227 Msa1390040:CDS
TGCTCTCTTTGTCATCCCTC+AGG 0.337569 tig0021307:+94593 Msa1390040:CDS
ACTACTGGTGGCTTGTAAAC+TGG 0.353333 tig0021307:-94879 None:intergenic
TACACTGGTGGTTGGTAAAC+CGG 0.382977 tig0021307:-94639 None:intergenic
ACTACTGGTGGCTTGTAAAC+TGG 0.391650 tig0021307:-95059 None:intergenic
TCAACTGGTGGCTTGTAGAC+TGG 0.401548 tig0021307:-94924 None:intergenic
TCAACTGGTGGCTTGTAAAC+AGG 0.402499 tig0021307:-94999 None:intergenic
TACACAGGTGGCTTCTCTAC+AGG 0.405035 tig0021307:-94699 None:intergenic
CTCAACTGGAGGCTTGTAAA+CGG 0.405571 tig0021307:-95120 None:intergenic
TCAACTGGTGGCTTATACAC+TGG 0.412257 tig0021307:-94654 None:intergenic
TAAACAGGAGGTTTGTAAAC+CGG 0.417330 tig0021307:-94789 None:intergenic
TACACCGGTGGCTTGTAAAC+AGG 0.419007 tig0021307:-94804 None:intergenic
TAGACTGGAGGCTTCTCAAC+TGG 0.423306 tig0021307:-95134 None:intergenic
AGACTGGAGGTTTCTCAACT+GGG 0.425047 tig0021307:-95178 None:intergenic
TGGTGAGGAGGTCCGTAAAC+TGG 0.427954 tig0021307:-95239 None:intergenic
TAAACAGGAGGCTTGTAAAC+AGG 0.429228 tig0021307:-94984 None:intergenic
TAAACTGGTGGCTTCTCGAC+TGG 0.430061 tig0021307:-95224 None:intergenic
TAGACTGGAGGCTTCTCAAC+TGG 0.434291 tig0021307:-94939 None:intergenic
TCGACTGGAGGCTTGTAAAC+TGG 0.436990 tig0021307:-95209 None:intergenic
TACACCGGAGGCTTGTAAAC+AGG 0.441057 tig0021307:-95029 None:intergenic
TAAACTGGTGGCTTGTAGAC+TGG 0.441265 tig0021307:-95194 None:intergenic
TAAACGGGTGGCTTGTAGAC+TGG 0.441414 tig0021307:-95104 None:intergenic
TAAACAGGTGGCTTGTAGAC+TGG 0.443434 tig0021307:-95149 None:intergenic
TATACCGGAGGCTTGTAAAC+AGG 0.449409 tig0021307:-94849 None:intergenic
TAAACAGGAGGCTTCTCAAC+TGG 0.459812 tig0021307:-94834 None:intergenic
TAAACAGGAGGCTTCTCAAC+TGG 0.459812 tig0021307:-95014 None:intergenic
TCAACTGGTGGCTTGTACAC+CGG 0.460751 tig0021307:-94819 None:intergenic
TACACCGGTGGCTTGTAGAC+TGG 0.463097 tig0021307:-94954 None:intergenic
TATACAGGTGGCTTCACTAC+TGG 0.464722 tig0021307:-94894 None:intergenic
GCTCTCTTTGTCATCCCTCA+GGG 0.466378 tig0021307:+94594 Msa1390040:CDS
TAGACTGGAGGCTTGTATAC+AGG 0.470954 tig0021307:-94909 None:intergenic
TAGACTGGAGGCTTGTATAC+AGG 0.470954 tig0021307:-95089 None:intergenic
TCAACTGGAGGCTTGTAAAC+GGG 0.476504 tig0021307:-95119 None:intergenic
TAAACTGGTGGCTTGTACAC+CGG 0.484891 tig0021307:-95044 None:intergenic
GCCTCCTGTTTACAAGCCTC+CGG 0.502841 tig0021307:+95025 Msa1390040:CDS
GCCTCCTGTTTACAAGCCTC+CGG 0.504860 tig0021307:+94845 Msa1390040:CDS
AAACAGGAGGTTTGTAAACC+GGG 0.508037 tig0021307:-94788 None:intergenic
TATACAGGTGGCTTAACTAC+TGG 0.513910 tig0021307:-95074 None:intergenic
TACACAGGTGGCTTATACAC+AGG 0.513962 tig0021307:-94714 None:intergenic
TGCCAATTATGACAAGCCTC+CGG 0.514734 tig0021307:+94620 Msa1390040:CDS
AAGCAGCACAAGGAAGTTTG+AGG 0.519715 tig0021307:-94565 None:intergenic
TAAACTGGAGGCTTGTATAC+CGG 0.526226 tig0021307:-94864 None:intergenic
TAAACAGGAGGCTTGTACAC+CGG 0.529016 tig0021307:-94969 None:intergenic
GACTGGAGGTTTCTCAACTG+GGG 0.534766 tig0021307:-95177 None:intergenic
ACACAGGTGGCTTCTCTACA+GGG 0.554240 tig0021307:-94698 None:intergenic
GGGAACTATGGGTGGTGAGG+AGG 0.563963 tig0021307:-95251 None:intergenic
ACTGGAGGTTTCTCAACTGG+GGG 0.581297 tig0021307:-95176 None:intergenic
CGAGGGAACTATGGGTGGTG+AGG 0.583741 tig0021307:-95254 None:intergenic
ACCTCCTGTTTACAAGCCAC+CGG 0.585895 tig0021307:+94800 Msa1390040:CDS
GCCTCCAGTCTACAAGCCAC+CGG 0.597241 tig0021307:+94950 Msa1390040:CDS
ACTGGAGGCTTCTCAACTGG+TGG 0.597757 tig0021307:-94936 None:intergenic
ACAGGTGGCTTCACTACTGG+TGG 0.613745 tig0021307:-94891 None:intergenic
ACTGGTGGCTTCTCGACTGG+AGG 0.616423 tig0021307:-95221 None:intergenic
AACAGGAGGTTTGTAAACCG+GGG 0.616438 tig0021307:-94787 None:intergenic
ACTGGTGGCTTGTAGACTGG+AGG 0.619678 tig0021307:-94921 None:intergenic
ACTGGAGGCTTGTAAACTGG+TGG 0.629358 tig0021307:-95206 None:intergenic
GCCACCTGTGTACAAGCCCC+CGG 0.630519 tig0021307:+94725 Msa1390040:CDS
ACTGGTGGCTTATACACTGG+TGG 0.631560 tig0021307:-94651 None:intergenic
TCATAATTGGCAAGACCCTG+AGG 0.637663 tig0021307:-94609 None:intergenic
ACCGGTGGCTTGTAAACAGG+AGG 0.639427 tig0021307:-94801 None:intergenic
TGAGGAGGTCCGTAAACTGG+TGG 0.639666 tig0021307:-95236 None:intergenic
ACAGGAGGCTTCTCAACTGG+TGG 0.640818 tig0021307:-94831 None:intergenic
ACAGGAGGCTTCTCAACTGG+TGG 0.640818 tig0021307:-95011 None:intergenic
ACCGGAGGCTTGTAAACAGG+AGG 0.642069 tig0021307:-94846 None:intergenic
CATAATTGGCAAGACCCTGA+GGG 0.642655 tig0021307:-94608 None:intergenic
ACAGGTGGCTTCTCTACAGG+GGG 0.643712 tig0021307:-94696 None:intergenic
ACCGGTGGCTTGTAGACTGG+AGG 0.645740 tig0021307:-94951 None:intergenic
ACTGGTGGCTTGTACACCGG+TGG 0.645745 tig0021307:-94816 None:intergenic
ACTGGAGGCTTCTCAACTGG+AGG 0.646341 tig0021307:-95131 None:intergenic
ACCGGAGGCTTGTAAACAGG+AGG 0.649300 tig0021307:-95026 None:intergenic
ACTGGAGGCTTGTAAACGGG+TGG 0.650242 tig0021307:-95116 None:intergenic
GTGGCTTATACACTGGTGGT+TGG 0.651466 tig0021307:-94647 None:intergenic
ACTGGTGGCTTGTAGACTGG+AGG 0.655799 tig0021307:-95191 None:intergenic
ACAGGAGGCTTGTAAACAGG+AGG 0.656540 tig0021307:-94981 None:intergenic
CTACCCGAGGGAACTATGGG+TGG 0.657162 tig0021307:-95259 None:intergenic
CACAGGTGGCTTCTCTACAG+GGG 0.659499 tig0021307:-94697 None:intergenic
ACTGGAGGCTTGTATACAGG+TGG 0.663475 tig0021307:-94906 None:intergenic
ACTGGAGGCTTGTATACAGG+TGG 0.663475 tig0021307:-95086 None:intergenic
ACAGGTGGCTTAACTACTGG+TGG 0.665885 tig0021307:-95071 None:intergenic
ACAGGAGGTTTGTAAACCGG+GGG 0.670551 tig0021307:-94786 None:intergenic
ACTGGTGGCTTGTAAACAGG+AGG 0.672730 tig0021307:-94996 None:intergenic
ACTGGAGGCTTGTATACCGG+AGG 0.673497 tig0021307:-94861 None:intergenic
ACGGGTGGCTTGTAGACTGG+AGG 0.678574 tig0021307:-95101 None:intergenic
ACTGGTGGCTTGTAAACTGG+TGG 0.678967 tig0021307:-95056 None:intergenic
ACAGGAGGCTTGTACACCGG+TGG 0.679752 tig0021307:-94966 None:intergenic
ACTGGTGGCTTGTAAACTGG+AGG 0.680586 tig0021307:-94876 None:intergenic
ACAGGTGGCTTGTAGACTGG+AGG 0.680593 tig0021307:-95146 None:intergenic
ACTGGTGGCTTGTACACCGG+AGG 0.694758 tig0021307:-95041 None:intergenic
ACAGGTGGCTTATACACAGG+TGG 0.704202 tig0021307:-94711 None:intergenic
ACTGGTGGTTGGTAAACCGG+AGG 0.711189 tig0021307:-94636 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
TAAACAGGAGGTTTGTAAAC+CGG - tig0021307:94792-94811 None:intergenic 35.0%
AAACAGGAGGTTTGTAAACC+GGG - tig0021307:94791-94810 None:intergenic 40.0%
TAAACTGGAGGCTTGTATAC+CGG - tig0021307:94867-94886 None:intergenic 40.0%
TAAACAGGAGGCTTGTAAAC+AGG - tig0021307:94987-95006 None:intergenic 40.0%
TATACAGGTGGCTTAACTAC+TGG - tig0021307:95077-95096 None:intergenic 40.0%
AAGCAGCACAAGGAAGTTTG+AGG - tig0021307:94568-94587 None:intergenic 45.0%
GAGCAAAAAGAAGCAGCACA+AGG - tig0021307:94578-94597 None:intergenic 45.0%
CATAATTGGCAAGACCCTGA+GGG - tig0021307:94611-94630 None:intergenic 45.0%
TCATAATTGGCAAGACCCTG+AGG - tig0021307:94612-94631 None:intergenic 45.0%
TGCCAATTATGACAAGCCTC+CGG + tig0021307:94620-94639 Msa1390040:CDS 45.0%
AACCGGAGGCTTGTCATAAT+TGG - tig0021307:94625-94644 None:intergenic 45.0%
!! TACACTGGTGGTTGGTAAAC+CGG - tig0021307:94642-94661 None:intergenic 45.0%
TCAACTGGTGGCTTATACAC+TGG - tig0021307:94657-94676 None:intergenic 45.0%
TACACAGGTGGCTTATACAC+AGG - tig0021307:94717-94736 None:intergenic 45.0%
! TACACAGGTGGCTTTTCTAC+CGG - tig0021307:94747-94766 None:intergenic 45.0%
AACAGGAGGTTTGTAAACCG+GGG - tig0021307:94790-94809 None:intergenic 45.0%
TAAACAGGAGGCTTCTCAAC+TGG - tig0021307:94837-94856 None:intergenic 45.0%
TATACCGGAGGCTTGTAAAC+AGG - tig0021307:94852-94871 None:intergenic 45.0%
! ACTACTGGTGGCTTGTAAAC+TGG - tig0021307:94882-94901 None:intergenic 45.0%
TATACAGGTGGCTTCACTAC+TGG - tig0021307:94897-94916 None:intergenic 45.0%
TAGACTGGAGGCTTGTATAC+AGG - tig0021307:94912-94931 None:intergenic 45.0%
TAAACAGGAGGCTTGTACAC+CGG - tig0021307:94972-94991 None:intergenic 45.0%
! TCAACTGGTGGCTTGTAAAC+AGG - tig0021307:95002-95021 None:intergenic 45.0%
TAAACAGGAGGCTTCTCAAC+TGG - tig0021307:94837-94856 None:intergenic 45.0%
! TAAACTGGTGGCTTGTACAC+CGG - tig0021307:95047-95066 None:intergenic 45.0%
! ACTACTGGTGGCTTGTAAAC+TGG - tig0021307:94882-94901 None:intergenic 45.0%
TAGACTGGAGGCTTGTATAC+AGG - tig0021307:94912-94931 None:intergenic 45.0%
TCAACTGGAGGCTTGTAAAC+GGG - tig0021307:95122-95141 None:intergenic 45.0%
CTCAACTGGAGGCTTGTAAA+CGG - tig0021307:95123-95142 None:intergenic 45.0%
! TAAACAGGTGGCTTGTAGAC+TGG - tig0021307:95152-95171 None:intergenic 45.0%
AGACTGGAGGTTTCTCAACT+GGG - tig0021307:95181-95200 None:intergenic 45.0%
TAGACTGGAGGTTTCTCAAC+TGG - tig0021307:95182-95201 None:intergenic 45.0%
! TAAACTGGTGGCTTGTAGAC+TGG - tig0021307:95197-95216 None:intergenic 45.0%
TGCTCTCTTTGTCATCCCTC+AGG + tig0021307:94593-94612 Msa1390040:CDS 50.0%
GCTCTCTTTGTCATCCCTCA+GGG + tig0021307:94594-94613 Msa1390040:CDS 50.0%
GTGGCTTATACACTGGTGGT+TGG - tig0021307:94650-94669 None:intergenic 50.0%
ACTGGTGGCTTATACACTGG+TGG - tig0021307:94654-94673 None:intergenic 50.0%
TAGACAGGGGGTTTCTCAAC+TGG - tig0021307:94672-94691 None:intergenic 50.0%
TACAGGGGGTTTGTAGACAG+GGG - tig0021307:94685-94704 None:intergenic 50.0%
CTACAGGGGGTTTGTAGACA+GGG - tig0021307:94686-94705 None:intergenic 50.0%
TCTACAGGGGGTTTGTAGAC+AGG - tig0021307:94687-94706 None:intergenic 50.0%
ACACAGGTGGCTTCTCTACA+GGG - tig0021307:94701-94720 None:intergenic 50.0%
TACACAGGTGGCTTCTCTAC+AGG - tig0021307:94702-94721 None:intergenic 50.0%
ACAGGTGGCTTATACACAGG+TGG - tig0021307:94714-94733 None:intergenic 50.0%
! ACACAGGTGGCTTTTCTACC+GGG - tig0021307:94746-94765 None:intergenic 50.0%
ACAGGAGGTTTGTAAACCGG+GGG - tig0021307:94789-94808 None:intergenic 50.0%
ACCTCCTGTTTACAAGCCAC+CGG + tig0021307:94800-94819 Msa1390040:CDS 50.0%
! TACACCGGTGGCTTGTAAAC+AGG - tig0021307:94807-94826 None:intergenic 50.0%
! TCAACTGGTGGCTTGTACAC+CGG - tig0021307:94822-94841 None:intergenic 50.0%
! ACTGGTGGCTTGTAAACTGG+AGG - tig0021307:94879-94898 None:intergenic 50.0%
ACTGGAGGCTTGTATACAGG+TGG - tig0021307:94909-94928 None:intergenic 50.0%
! TCAACTGGTGGCTTGTAGAC+TGG - tig0021307:94927-94946 None:intergenic 50.0%
TAGACTGGAGGCTTCTCAAC+TGG - tig0021307:94942-94961 None:intergenic 50.0%
ACAGGAGGCTTGTAAACAGG+AGG - tig0021307:94984-95003 None:intergenic 50.0%
! ACTGGTGGCTTGTAAACAGG+AGG - tig0021307:94999-95018 None:intergenic 50.0%
TACACCGGAGGCTTGTAAAC+AGG - tig0021307:95032-95051 None:intergenic 50.0%
! ACTGGTGGCTTGTAAACTGG+TGG - tig0021307:94879-94898 None:intergenic 50.0%
ACAGGTGGCTTAACTACTGG+TGG - tig0021307:95074-95093 None:intergenic 50.0%
ACTGGAGGCTTGTATACAGG+TGG - tig0021307:94909-94928 None:intergenic 50.0%
! TAAACGGGTGGCTTGTAGAC+TGG - tig0021307:95107-95126 None:intergenic 50.0%
TAGACTGGAGGCTTCTCAAC+TGG - tig0021307:94942-94961 None:intergenic 50.0%
TCAACTGGGGGCTTGTAAAC+AGG - tig0021307:95167-95186 None:intergenic 50.0%
ACTGGAGGTTTCTCAACTGG+GGG - tig0021307:95179-95198 None:intergenic 50.0%
GACTGGAGGTTTCTCAACTG+GGG - tig0021307:95180-95199 None:intergenic 50.0%
ACTGGAGGCTTGTAAACTGG+TGG - tig0021307:95209-95228 None:intergenic 50.0%
TCGACTGGAGGCTTGTAAAC+TGG - tig0021307:95212-95231 None:intergenic 50.0%
TAAACTGGTGGCTTCTCGAC+TGG - tig0021307:95227-95246 None:intergenic 50.0%
GTCGAGAAGCCACCAGTTTA+CGG + tig0021307:95227-95246 Msa1390040:CDS 50.0%
!! ACTGGTGGTTGGTAAACCGG+AGG - tig0021307:94639-94658 None:intergenic 55.0%
ACAGGGGGTTTCTCAACTGG+TGG - tig0021307:94669-94688 None:intergenic 55.0%
ACAGGGGGTTTGTAGACAGG+GGG - tig0021307:94684-94703 None:intergenic 55.0%
ACAGGTGGCTTCTCTACAGG+GGG - tig0021307:94699-94718 None:intergenic 55.0%
CACAGGTGGCTTCTCTACAG+GGG - tig0021307:94700-94719 None:intergenic 55.0%
! ACAGGTGGCTTTTCTACCGG+GGG - tig0021307:94744-94763 None:intergenic 55.0%
! CACAGGTGGCTTTTCTACCG+GGG - tig0021307:94745-94764 None:intergenic 55.0%
ACAGGGGGTTTGTACACAGG+TGG - tig0021307:94759-94778 None:intergenic 55.0%
ACGACAGGGGGTTTGTACAC+AGG - tig0021307:94762-94781 None:intergenic 55.0%
AAACCGGGGGTTTCACGACA+GGG - tig0021307:94776-94795 None:intergenic 55.0%
TAAACCGGGGGTTTCACGAC+AGG - tig0021307:94777-94796 None:intergenic 55.0%
! ACCGGTGGCTTGTAAACAGG+AGG - tig0021307:94804-94823 None:intergenic 55.0%
ACAGGAGGCTTCTCAACTGG+TGG - tig0021307:94834-94853 None:intergenic 55.0%
GCCTCCTGTTTACAAGCCTC+CGG + tig0021307:94845-94864 Msa1390040:CDS 55.0%
ACCGGAGGCTTGTAAACAGG+AGG - tig0021307:94849-94868 None:intergenic 55.0%
ACTGGAGGCTTGTATACCGG+AGG - tig0021307:94864-94883 None:intergenic 55.0%
ACAGGTGGCTTCACTACTGG+TGG - tig0021307:94894-94913 None:intergenic 55.0%
! ACTGGTGGCTTGTAGACTGG+AGG - tig0021307:94924-94943 None:intergenic 55.0%
ACTGGAGGCTTCTCAACTGG+TGG - tig0021307:94939-94958 None:intergenic 55.0%
! TACACCGGTGGCTTGTAGAC+TGG - tig0021307:94957-94976 None:intergenic 55.0%
ACAGGAGGCTTCTCAACTGG+TGG - tig0021307:94834-94853 None:intergenic 55.0%
GCCTCCTGTTTACAAGCCTC+CGG + tig0021307:94845-94864 Msa1390040:CDS 55.0%
ACCGGAGGCTTGTAAACAGG+AGG - tig0021307:94849-94868 None:intergenic 55.0%
ACTGGAGGCTTGTAAACGGG+TGG - tig0021307:95119-95138 None:intergenic 55.0%
ACTGGAGGCTTCTCAACTGG+AGG - tig0021307:94939-94958 None:intergenic 55.0%
! ACAGGTGGCTTGTAGACTGG+AGG - tig0021307:95149-95168 None:intergenic 55.0%
ACTGGGGGCTTGTAAACAGG+TGG - tig0021307:95164-95183 None:intergenic 55.0%
! ACTGGTGGCTTGTAGACTGG+AGG - tig0021307:94924-94943 None:intergenic 55.0%
TGAGGAGGTCCGTAAACTGG+TGG - tig0021307:95239-95258 None:intergenic 55.0%
TGGTGAGGAGGTCCGTAAAC+TGG - tig0021307:95242-95261 None:intergenic 55.0%
TCTACCGGGGGCTTGTACAC+AGG - tig0021307:94732-94751 None:intergenic 60.0%
AACCGGGGGTTTCACGACAG+GGG - tig0021307:94775-94794 None:intergenic 60.0%
! ACTGGTGGCTTGTACACCGG+TGG - tig0021307:94819-94838 None:intergenic 60.0%
GCCTCCAGTCTACAAGCCAC+CGG + tig0021307:94920-94939 Msa1390040:CDS 60.0%
! ACCGGTGGCTTGTAGACTGG+AGG - tig0021307:94954-94973 None:intergenic 60.0%
ACAGGAGGCTTGTACACCGG+TGG - tig0021307:94969-94988 None:intergenic 60.0%
! ACTGGTGGCTTGTACACCGG+AGG - tig0021307:94819-94838 None:intergenic 60.0%
! ACGGGTGGCTTGTAGACTGG+AGG - tig0021307:95104-95123 None:intergenic 60.0%
ACTGGTGGCTTCTCGACTGG+AGG - tig0021307:95224-95243 None:intergenic 60.0%
GCCACCTGTGTACAAGCCCC+CGG + tig0021307:94725-94744 Msa1390040:CDS 65.0%
ACCGGGGGCTTGTACACAGG+TGG - tig0021307:94729-94748 None:intergenic 65.0%
ACCCCCTGTCGTGAAACCCC+CGG + tig0021307:94770-94789 Msa1390040:CDS 65.0%
ACCGGGGGTTTCACGACAGG+GGG - tig0021307:94774-94793 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0021307 gene 94558 95268 94558 ID=Msa1390040;Name=Msa1390040
tig0021307 mRNA 94558 95268 94558 ID=Msa1390040-mRNA-1;Parent=Msa1390040;Name=Msa1390040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|236
tig0021307 exon 94558 95268 94558 ID=Msa1390040-mRNA-1:exon:11952;Parent=Msa1390040-mRNA-1
tig0021307 CDS 94558 95268 94558 ID=Msa1390040-mRNA-1:cds;Parent=Msa1390040-mRNA-1
Gene Sequence

>Msa1390040

ATGGCTTCCTCAAACTTCCTTGTGCTGCTTCTTTTTGCTCTCTTTGTCATCCCTCAGGGTCTTGCCAATTATGACAAGCCTCCGGTTTACCAACCACCAGTGTATAAGCCACCAGTTGAGAAACCCCCTGTCTACAAACCCCCTGTAGAGAAGCCACCTGTGTATAAGCCACCTGTGTACAAGCCCCCGGTAGAAAAGCCACCTGTGTACAAACCCCCTGTCGTGAAACCCCCGGTTTACAAACCTCCTGTTTACAAGCCACCGGTGTACAAGCCACCAGTTGAGAAGCCTCCTGTTTACAAGCCTCCGGTATACAAGCCTCCAGTTTACAAGCCACCAGTAGTGAAGCCACCTGTATACAAGCCTCCAGTCTACAAGCCACCAGTTGAGAAGCCTCCAGTCTACAAGCCACCGGTGTACAAGCCTCCTGTTTACAAGCCTCCTGTTTACAAGCCACCAGTTGAGAAGCCTCCTGTTTACAAGCCTCCGGTGTACAAGCCACCAGTTTACAAGCCACCAGTAGTTAAGCCACCTGTATACAAGCCTCCAGTCTACAAGCCACCCGTTTACAAGCCTCCAGTTGAGAAGCCTCCAGTCTACAAGCCACCTGTTTACAAGCCCCCAGTTGAGAAACCTCCAGTCTACAAGCCACCAGTTTACAAGCCTCCAGTCGAGAAGCCACCAGTTTACGGACCTCCTCACCACCCATAG

Protein sequence

>Msa1390040

MASSNFLVLLLFALFVIPQGLANYDKPPVYQPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVVKPPVYKPPVYKPPVYKPPVEKPPVYKPPVYKPPVYKPPVVKPPVYKPPVYKPPVEKPPVYKPPVYKPPVYKPPVYKPPVEKPPVYKPPVYKPPVYKPPVVKPPVYKPPVYKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYGPPHHP*