AlfalfaGEDB | Msa0081210

M. sativa cultivar zhongmu-4 / Msa0081210

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081210	XP_013469106.1	98.540	137	2	0	1	137	1	137	2.69e-90	268

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081210	A0A072VMA2	98.540	137	2	0	1	137	1	137	1.29e-90	268

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012940	Msa0081210	0.812584	3.938728e-51	-8.615850e-47
Msa0017390	Msa0081210	0.813764	2.169980e-51	-8.615850e-47
Msa0028930	Msa0081210	0.808499	3.004909e-50	-8.615850e-47
Msa0033880	Msa0081210	0.834693	2.586347e-56	-8.615850e-47
Msa0039250	Msa0081210	0.804706	1.898990e-49	-8.615850e-47
Msa0041690	Msa0081210	0.800958	1.129051e-48	-8.615850e-47
Msa0057590	Msa0081210	0.803868	2.839196e-49	-8.615850e-47
Msa0065550	Msa0081210	0.821618	3.668378e-53	-8.615850e-47
Msa0077900	Msa0081210	0.804394	2.206350e-49	-8.615850e-47
Msa0080830	Msa0081210	0.805828	1.105311e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081210	MtrunA17_Chr1g0193561	98.540	137	2	0	1	137	1	137	2.48e-94	268
Msa0081210	MtrunA17_Chr4g0066341	97.810	137	2	1	1	137	1	136	1.35e-91	261
Msa0081210	MtrunA17_Chr1g0193621	91.489	141	7	2	1	137	1	140	1.32e-86	248

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081210	AT5G03050.2	58.730	126	47	2	10	132	11	134	1.49e-42	137
Msa0081210	AT5G03050.1	58.730	126	47	2	10	132	11	134	1.49e-42	137

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Find 43 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCAGGATTCACAAGGAAC+AGG	0.472958	1_2:+59724473	Msa0081210:intron
AAGGAAACGTATGAAACCTG+GGG	0.689052	1_2:+59723924	Msa0081210:CDS
AATATCCAATTCATTTCTAT+TGG	0.230794	1_2:+59724685	Msa0081210:three_prime_UTR
ACAGCCCAATAGAAATGAAT+TGG	0.384691	1_2:-59724690	None:intergenic
AGCATTAGCTTCCTCATTTG+AGG	0.397998	1_2:-59724541	None:intergenic
AGTTGCCTCATGTCATGTCT+AGG	0.572968	1_2:+59724619	Msa0081210:three_prime_UTR
ATATACCTAGACATGACATG+AGG	0.734630	1_2:-59724624	None:intergenic
ATATCCAATTCATTTCTATT+GGG	0.345862	1_2:+59724686	Msa0081210:three_prime_UTR
ATCAGGGAAAACAATGTTTA+AGG	0.261813	1_2:+59724311	Msa0081210:CDS
ATCGCAGATTGTCCTTGTAC+AGG	0.525946	1_2:+59724079	Msa0081210:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATAAGCTGCAAATTTAAG+TGG	+	chr1_2:59723802-59723821	Msa0081210:intron	30.0%
ATGACGAGAAAAATGTTGAA+AGG	-	chr1_2:59723965-59723984	None:intergenic	30.0%
ATCAGGGAAAACAATGTTTA+AGG	+	chr1_2:59724311-59724330	Msa0081210:CDS	30.0%
CTATAAGCTGCAAATTTAAG+TGG	+	chr1_2:59723802-59723821	Msa0081210:intron	30.0%
ATGACGAGAAAAATGTTGAA+AGG	-	chr1_2:59723965-59723984	None:intergenic	30.0%
ATCAGGGAAAACAATGTTTA+AGG	+	chr1_2:59724311-59724330	Msa0081210:CDS	30.0%
CAACAATCAGAAAACCTAAC+CGG	+	chr1_2:59722914-59722933	Msa0081210:five_prime_UTR	35.0%
AACGGTTGAGATGAATTTAC+CGG	-	chr1_2:59722936-59722955	None:intergenic	35.0%
AGAGCGAAGAAGATGAAAAA+CGG	-	chr1_2:59722954-59722973	None:intergenic	35.0%
AAAACAGCTTAGTCCCTATT+TGG	+	chr1_2:59723628-59723647	Msa0081210:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	59722764	59724888	59722764	ID=Msa0081210;Name=Msa0081210
chr1_2	mRNA	59722764	59724888	59722764	ID=Msa0081210-mRNA-1;Parent=Msa0081210;Name=Msa0081210-mRNA-1;_AED=0.06;_eAED=0.06;_QI=181\|1\|1\|1\|0.75\|0.6\|5\|277\|137
chr1_2	exon	59722764	59722935	59722764	ID=Msa0081210-mRNA-1:exon:19371;Parent=Msa0081210-mRNA-1
chr1_2	exon	59723877	59723945	59723877	ID=Msa0081210-mRNA-1:exon:19372;Parent=Msa0081210-mRNA-1
chr1_2	exon	59724047	59724193	59724047	ID=Msa0081210-mRNA-1:exon:19373;Parent=Msa0081210-mRNA-1
chr1_2	exon	59724294	59724367	59724294	ID=Msa0081210-mRNA-1:exon:19374;Parent=Msa0081210-mRNA-1
chr1_2	exon	59724479	59724888	59724479	ID=Msa0081210-mRNA-1:exon:19375;Parent=Msa0081210-mRNA-1
chr1_2	five_prime_UTR	59722764	59722935	59722764	ID=Msa0081210-mRNA-1:five_prime_utr;Parent=Msa0081210-mRNA-1
chr1_2	five_prime_UTR	59723877	59723885	59723877	ID=Msa0081210-mRNA-1:five_prime_utr;Parent=Msa0081210-mRNA-1
chr1_2	CDS	59723886	59723945	59723886	ID=Msa0081210-mRNA-1:cds;Parent=Msa0081210-mRNA-1
chr1_2	CDS	59724047	59724193	59724047	ID=Msa0081210-mRNA-1:cds;Parent=Msa0081210-mRNA-1
chr1_2	CDS	59724294	59724367	59724294	ID=Msa0081210-mRNA-1:cds;Parent=Msa0081210-mRNA-1
chr1_2	CDS	59724479	59724611	59724479	ID=Msa0081210-mRNA-1:cds;Parent=Msa0081210-mRNA-1
chr1_2	three_prime_UTR	59724612	59724888	59724612	ID=Msa0081210-mRNA-1:three_prime_utr;Parent=Msa0081210-mRNA-1

Gene Sequence

>Msa0081210

ATGTCAGCTCAAAAAGGAAGCATGGACAGTGGAGCTTCAAGGAAACGTATGAAACCTGGGGTAGTACAAGAAAAGATTAGAGATGAAGCAGAATCGCAGATTGTCCTTGTACAGGAGGAAGGGTTTGAGACTAACCAAGTTGGGTCTGAAGAAATGGAGCTCAATATTTCTCTTGTTCTTGAGAAGATTGAGAATTTTACTCAGAGGGTATCTGAGCTCTTGGAATCAGGGAAAACAATGTTTAAGGAGCTATGCAATGAATTTGAAGAGAAACTGATTATGATTCACAAGGAACAGGTTGAAAAATGGCAGGAAGAGATCAAAGAACTGCGTGCACTTGATGCCTCAAATGAGGAAGCTAATGCTCTTCTGCAAAATGCACGATATGTACTTCAGCTAACTCGTAATGATTAG

Protein sequence

>Msa0081210

MSAQKGSMDSGASRKRMKPGVVQEKIRDEAESQIVLVQEEGFETNQVGSEEMELNISLVLEKIENFTQRVSELLESGKTMFKELCNEFEEKLIMIHKEQVEKWQEEIKELRALDASNEEANALLQNARYVLQLTRND*