AlfalfaGEDB | Msa0747060

M. sativa cultivar zhongmu-4 / Msa0747060

KEGG: -
GO: GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
PFAM: PF13920.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747060	XP_013469301.1	99.138	232	2	0	10	241	620	851	1.62e-166	491

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747060	sp\|P29503\|NEUR_DROME	43.373	83	37	2	167	239	671	753	4.78e-13	71.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747060	G8A1I5	99.138	232	2	0	10	241	620	851	7.72e-167	491

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006380	Msa0747060	0.800953	1.131687e-48	-8.615850e-47
Msa0015610	Msa0747060	0.804915	1.717476e-49	-8.615850e-47
Msa0021510	Msa0747060	0.812209	4.756546e-51	-8.615850e-47
Msa0035150	Msa0747060	0.824431	8.100749e-54	-8.615850e-47
Msa0043980	Msa0747060	0.833315	5.724313e-56	-8.615850e-47
Msa0044000	Msa0747060	0.838893	2.193699e-57	-8.615850e-47
Msa0044330	Msa0747060	0.803574	3.267108e-49	-8.615850e-47
Msa0057680	Msa0747060	-0.821420	4.075624e-53	-8.615850e-47
Msa0058490	Msa0747060	0.860170	2.489204e-63	-8.615850e-47
Msa0058510	Msa0747060	0.859801	3.217295e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747060	MtrunA17_Chr1g0197481	99.138	232	2	0	10	241	620	851	1.49e-170	491
Msa0747060	MtrunA17_Chr2g0320491	54.032	248	96	3	10	240	589	835	1.22e-75	244
Msa0747060	MtrunA17_Chr4g0027771	57.082	233	85	5	10	241	600	818	3.10e-75	243
Msa0747060	MtrunA17_Chr2g0292551	53.909	243	93	4	10	235	491	731	9.26e-70	228
Msa0747060	MtrunA17_Chr2g0296581	40.000	135	70	2	104	238	789	912	9.36e-21	90.9
Msa0747060	MtrunA17_Chr4g0052941	32.331	133	78	1	107	239	695	815	1.66e-15	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747060	AT5G04460.6	78.017	232	50	1	10	241	633	863	1.23e-122	369
Msa0747060	AT5G04460.3	78.017	232	50	1	10	241	633	863	1.23e-122	369
Msa0747060	AT5G04460.1	78.017	232	50	1	10	241	633	863	1.23e-122	369
Msa0747060	AT5G04460.4	78.017	232	50	1	10	241	633	863	1.23e-122	369
Msa0747060	AT5G04460.2	76.289	194	45	1	10	203	633	825	7.27e-93	290
Msa0747060	AT2G27950.2	54.274	234	102	4	10	241	609	839	2.27e-80	257
Msa0747060	AT2G27950.3	54.274	234	102	4	10	241	609	839	2.27e-80	257
Msa0747060	AT2G27950.1	54.274	234	102	4	10	241	609	839	2.27e-80	257
Msa0747060	AT5G04460.5	70.192	104	30	1	10	113	633	735	2.70e-33	127
Msa0747060	AT2G34920.2	31.739	230	113	5	10	238	475	661	1.11e-29	117

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Find 80 sgRNAs with CRISPR-Local

Find 494 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTTGTAAAGAATAAT+TGG	0.153114	5_1:+70711475	None:intergenic
AAAGGAAAATTGGAAGGACA+TGG	0.584700	5_1:-70711676	Msa0747060:three_prime_UTR
AACCGCTCAGCTGGTGAAAA+TGG	0.300085	5_1:-70712205	Msa0747060:intron
AACCTCACTGATTGTATAAT+TGG	0.163159	5_1:-70711550	Msa0747060:three_prime_UTR
AAGATTTGCATCAAACTGGA+TGG	0.622065	5_1:-70712982	Msa0747060:CDS
AAGATTTGTAAAGAATAATT+GGG	0.455765	5_1:+70711476	None:intergenic
AAGGCATGAATCACATGCAG+AGG	0.630235	5_1:-70712300	Msa0747060:CDS
AAGGTCATGCACCAATTGAC+TGG	0.415663	5_1:-70713165	Msa0747060:CDS
AATTGCTCACAATTTCAGAG+CGG	0.765544	5_1:+70712942	None:intergenic
ACAATTGGCGCTCGGCATAA+AGG	0.381693	5_1:+70711730	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACATATGACCAGATTAT+TGG	+	chr5_1:70711591-70711610	None:intergenic	30.0%
ACTCAAATCATTACCAACTT+AGG	+	chr5_1:70711737-70711756	None:intergenic	30.0%
GAACAAAAATGAATCGTGAA+TGG	+	chr5_1:70711776-70711795	None:intergenic	30.0%
AAATAATCCACAAAGGATCT+TGG	+	chr5_1:70711911-70711930	None:intergenic	30.0%
TTCAACATAAATGACTCAAC+CGG	+	chr5_1:70711965-70711984	None:intergenic	30.0%
ATGACTCTGTAAATACTTTC+TGG	+	chr5_1:70712087-70712106	None:intergenic	30.0%
TTCTTATTGAAAAGGTCAAG+AGG	+	chr5_1:70712247-70712266	None:intergenic	30.0%
TTCCGATGTTCTTATTGAAA+AGG	+	chr5_1:70712255-70712274	None:intergenic	30.0%
AGACCTTATGTTGGAAAATA+CGG	-	chr5_1:70712279-70712298	Msa0747060:CDS	30.0%
TTTGGATAATATGGAAGGAA+AGG	+	chr5_1:70712310-70712329	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	70711474	70717037	70711474	ID=Msa0747060;Name=Msa0747060
chr5_1	mRNA	70711474	70717037	70711474	ID=Msa0747060-mRNA-1;Parent=Msa0747060;Name=Msa0747060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0.75\|0.6\|0.8\|1\|1\|5\|225\|241
chr5_1	exon	70711474	70711816	70711474	ID=Msa0747060-mRNA-1:exon:20852;Parent=Msa0747060-mRNA-1
chr5_1	exon	70711922	70712024	70711922	ID=Msa0747060-mRNA-1:exon:20851;Parent=Msa0747060-mRNA-1
chr5_1	exon	70712206	70712371	70712206	ID=Msa0747060-mRNA-1:exon:20850;Parent=Msa0747060-mRNA-1
chr5_1	exon	70712952	70713264	70712952	ID=Msa0747060-mRNA-1:exon:20849;Parent=Msa0747060-mRNA-1
chr5_1	exon	70717012	70717037	70717012	ID=Msa0747060-mRNA-1:exon:20848;Parent=Msa0747060-mRNA-1
chr5_1	CDS	70717012	70717037	70717012	ID=Msa0747060-mRNA-1:cds;Parent=Msa0747060-mRNA-1
chr5_1	CDS	70712952	70713264	70712952	ID=Msa0747060-mRNA-1:cds;Parent=Msa0747060-mRNA-1
chr5_1	CDS	70712206	70712371	70712206	ID=Msa0747060-mRNA-1:cds;Parent=Msa0747060-mRNA-1
chr5_1	CDS	70711922	70712024	70711922	ID=Msa0747060-mRNA-1:cds;Parent=Msa0747060-mRNA-1
chr5_1	CDS	70711699	70711816	70711699	ID=Msa0747060-mRNA-1:cds;Parent=Msa0747060-mRNA-1
chr5_1	three_prime_UTR	70711474	70711698	70711474	ID=Msa0747060-mRNA-1:three_prime_utr;Parent=Msa0747060-mRNA-1

Gene Sequence

>Msa0747060

ATGGCTGAAGAAGAGTCCTTTCATTGGAGAAGTGTATCTAACCTTCTTCGGAGTGGTTTCCGTGAAAGTCTGGATCAACTAATACAGTCATATGTTGAAAGGCAAGGTCATGCACCAATTGACTGGGATTTGCATCGAAACTTGCCTACGCCGACTCCTGCCTCACCGGAACGAGACCCTGATCAGCAGGGTGATGAACGTAATGAGGGACAGCATGAAGCCATTAACAGACCTTCACCGGTGTTGCCTTCTCCACCAGTTCCCCCGCCACAACCACTTTGGCACCAAGATTTGCATCAAACTGGATGGTCTCGTCATACCATGCACCGCTCTGAAATTGAATGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCCCTCAACCGCTCAGCTGGTGAAAATGGATTGGCTGCTGGGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTATGTTGTGATAACCACATTGATTCGCTTTTGTACAGATGTGGACACATGTGCACATGTTCAAAATGTGCTAGTGAGTTAATTCGTGGAGGAGGTAAGTGTCCTTTATGCCGAGCGCCAATTGTTGAGGTGGTCAGAGCATATTCCATACTGTAA

Protein sequence

>Msa0747060

MAEEESFHWRSVSNLLRSGFRESLDQLIQSYVERQGHAPIDWDLHRNLPTPTPASPERDPDQQGDERNEGQHEAINRPSPVLPSPPVPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLAAGTSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCASELIRGGGKCPLCRAPIVEVVRAYSIL*