AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264220 MtrunA17_Chr2g0328001 100.000 166 0 0 1 166 1 166 3.35e-124 346
Msa0264220 MtrunA17_Chr4g0031181 93.373 166 11 0 1 166 1 166 2.80e-107 303
Msa0264220 MtrunA17_Chr8g0362321 35.802 162 90 2 1 162 1 148 1.05e-33 116
Msa0264220 MtrunA17_Chr4g0060351 35.802 162 90 2 1 162 1 148 5.11e-33 114
Msa0264220 MtrunA17_Chr7g0275361 36.306 157 86 2 5 161 2 144 1.74e-30 108
Msa0264220 MtrunA17_Chr3g0108261 35.669 157 87 2 5 161 2 144 5.86e-29 104
Msa0264220 MtrunA17_Chr5g0432831 35.669 157 87 2 5 161 2 144 7.59e-29 103
Msa0264220 MtrunA17_Chr1g0154011 35.032 157 88 2 5 161 2 144 2.81e-28 102
Msa0264220 MtrunA17_Chr4g0037011 35.669 157 87 2 5 161 2 144 3.34e-28 102
Msa0264220 MtrunA17_Chr8g0369311 33.758 157 90 2 5 161 58 200 1.49e-26 99.8
Msa0264220 MtrunA17_Chr4g0038891 36.184 152 82 3 9 160 37 173 4.82e-26 97.8
Msa0264220 MtrunA17_Chr1g0199951 36.774 155 84 2 3 157 40 180 1.04e-24 94.7
Msa0264220 MtrunA17_Chr5g0396451 34.868 152 84 3 9 160 37 173 6.97e-24 92.0
Msa0264220 MtrunA17_Chr2g0316211 34.074 135 75 2 11 145 12 132 1.06e-23 90.9
Msa0264220 MtrunA17_Chr2g0316201 33.333 135 76 2 11 145 12 132 3.78e-23 89.4
Msa0264220 MtrunA17_Chr3g0139901 33.613 119 65 2 28 145 28 133 6.60e-22 86.3
Msa0264220 MtrunA17_Chr5g0401831 34.109 129 74 2 33 161 37 154 7.63e-21 83.6
Msa0264220 MtrunA17_Chr4g0053191 32.075 159 93 2 1 155 1 148 1.01e-20 83.2
Msa0264220 MtrunA17_Chr8g0378601 34.615 130 71 2 2 131 20 135 7.16e-20 81.3
Msa0264220 MtrunA17_Chr3g0131871 28.986 138 82 4 9 144 7 130 1.90e-18 78.2
Msa0264220 MtrunA17_Chr5g0403591 30.000 120 71 1 40 159 63 169 3.35e-14 67.0
Msa0264220 MtrunA17_Chr8g0372391 30.833 120 67 3 1 119 12 116 1.32e-12 62.0
Msa0264220 MtrunA17_Chr5g0404931 32.143 112 60 3 9 119 20 116 6.98e-12 60.1
Msa0264220 MtrunA17_Chr7g0254701 26.207 145 93 2 9 153 15 145 1.38e-11 60.8
Msa0264220 MtrunA17_Chr8g0345331 29.412 136 66 6 1 127 1 115 3.79e-11 59.7
Msa0264220 MtrunA17_Chr4g0068301 28.205 156 81 6 1 148 7 139 4.25e-11 60.1
Msa0264220 MtrunA17_Chr8g0376111 36.000 100 55 4 31 127 66 159 4.70e-11 60.1
Msa0264220 MtrunA17_Chr4g0059291 24.051 158 103 5 10 164 6 149 6.63e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264220 AT5G59300.1 92.169 166 13 0 1 166 1 166 1.20e-107 304
Msa0264220 AT3G46460.1 91.566 166 14 0 1 166 1 166 7.09e-106 300
Msa0264220 AT3G55380.1 87.805 164 20 0 3 166 4 167 3.27e-100 285
Msa0264220 AT3G55380.2 71.717 198 22 1 3 166 4 201 4.01e-92 266
Msa0264220 AT3G46460.3 90.598 117 11 0 50 166 8 124 1.96e-78 229
Msa0264220 AT3G46460.2 90.598 117 11 0 50 166 8 124 1.96e-78 229
Msa0264220 AT2G02760.1 35.802 162 90 2 1 162 1 148 3.60e-33 115
Msa0264220 AT2G02760.2 35.802 162 90 2 1 162 1 148 3.60e-33 115
Msa0264220 AT2G02760.4 35.802 162 90 2 1 162 1 148 3.60e-33 115
Msa0264220 AT2G02760.3 35.802 162 90 2 1 162 1 148 3.60e-33 115
Msa0264220 AT1G14400.1 35.802 162 90 2 1 162 1 148 3.64e-33 115
Msa0264220 AT1G14400.2 35.802 162 90 2 1 162 1 148 3.64e-33 115
Msa0264220 AT5G62540.1 36.420 162 89 2 1 162 1 148 1.36e-32 114
Msa0264220 AT3G08700.2 33.758 157 91 1 5 161 2 145 9.23e-30 106
Msa0264220 AT3G08700.1 33.758 157 91 1 5 161 2 145 9.23e-30 106
Msa0264220 AT3G08690.2 35.669 157 87 2 5 161 2 144 9.38e-30 106
Msa0264220 AT3G08690.1 35.669 157 87 2 5 161 2 144 9.38e-30 106
Msa0264220 AT1G64230.2 36.306 157 86 2 5 161 2 144 3.87e-29 105
Msa0264220 AT1G64230.1 36.306 157 86 2 5 161 2 144 3.87e-29 105
Msa0264220 AT4G27960.1 35.032 157 88 2 5 161 2 144 6.95e-29 104
Msa0264220 AT5G41700.5 35.032 157 88 2 5 161 2 144 1.78e-28 103
Msa0264220 AT5G41700.2 35.032 157 88 2 5 161 2 144 1.78e-28 103
Msa0264220 AT5G41700.1 35.032 157 88 2 5 161 2 144 1.78e-28 103
Msa0264220 AT5G53300.2 34.395 157 89 2 5 161 2 144 3.56e-28 102
Msa0264220 AT5G53300.4 34.395 157 89 2 5 161 2 144 3.56e-28 102
Msa0264220 AT5G53300.1 34.395 157 89 2 5 161 2 144 3.56e-28 102
Msa0264220 AT4G27960.2 34.161 161 92 2 1 161 28 174 5.34e-28 103
Msa0264220 AT5G56150.1 33.121 157 91 2 5 161 2 144 7.18e-27 99.4
Msa0264220 AT5G41700.4 34.177 158 89 3 5 161 2 145 2.85e-26 97.8
Msa0264220 AT1G64230.3 32.727 165 90 2 5 161 2 153 9.18e-26 96.7
Msa0264220 AT2G16740.1 31.210 157 94 2 5 161 2 144 5.52e-24 91.7
Msa0264220 AT1G64230.5 35.000 120 65 1 33 152 71 177 1.98e-23 91.7
Msa0264220 AT1G64230.4 35.000 120 65 1 33 152 71 177 1.98e-23 91.7
Msa0264220 AT1G50490.1 35.878 131 70 2 30 160 60 176 2.89e-23 90.9
Msa0264220 AT5G25760.1 34.932 146 78 4 2 145 3 133 2.97e-23 90.1
Msa0264220 AT5G25760.2 34.932 146 78 4 2 145 3 133 2.97e-23 90.1
Msa0264220 AT1G16890.2 33.333 135 76 2 11 145 12 132 4.04e-23 89.7
Msa0264220 AT1G78870.2 33.333 135 76 2 11 145 12 132 5.45e-23 89.4
Msa0264220 AT3G20060.1 34.211 152 85 3 9 160 41 177 8.62e-23 89.7
Msa0264220 AT3G20060.2 34.351 131 72 2 30 160 16 132 3.97e-22 86.7
Msa0264220 AT5G41700.3 37.607 117 59 2 5 121 2 104 2.32e-21 85.1
Msa0264220 AT1G16890.3 34.127 126 69 2 20 145 30 141 4.05e-21 84.7
Msa0264220 AT3G57870.1 34.437 151 84 2 9 155 10 149 6.45e-21 84.3
Msa0264220 AT1G36340.2 35.606 132 71 2 24 155 27 144 6.84e-21 84.0
Msa0264220 AT1G36340.1 35.606 132 71 2 24 155 27 144 6.84e-21 84.0
Msa0264220 AT5G53300.3 37.069 116 59 2 4 119 1 102 1.34e-20 82.0
Msa0264220 AT1G16890.1 33.945 109 59 1 37 145 4 99 1.77e-20 82.0
Msa0264220 AT1G78870.4 33.945 109 59 1 37 145 4 99 1.81e-20 82.0
Msa0264220 AT3G24515.1 32.143 168 97 3 2 161 4 162 3.67e-20 86.3
Msa0264220 AT5G56150.2 34.483 116 62 2 5 120 2 103 3.98e-20 80.9
Msa0264220 AT1G78870.1 33.636 110 59 2 37 145 4 100 1.10e-18 77.4
Msa0264220 AT3G24515.3 32.558 129 78 2 33 161 68 187 1.49e-17 79.0
Msa0264220 AT5G50870.1 29.710 138 81 4 9 144 7 130 2.23e-17 75.9
Msa0264220 AT5G50870.2 29.927 137 80 4 9 143 7 129 7.59e-17 74.7
Msa0264220 AT3G13550.1 31.544 149 85 3 9 154 41 175 1.13e-16 73.6
Msa0264220 AT1G78870.3 31.304 115 65 2 11 125 12 112 1.50e-16 71.6
Msa0264220 AT3G13550.2 32.787 122 68 2 9 130 41 148 2.00e-14 67.4
Msa0264220 AT5G05080.2 27.586 145 91 2 9 153 15 145 4.07e-14 68.2
Msa0264220 AT5G05080.3 27.586 145 91 2 9 153 15 145 4.07e-14 68.2
Msa0264220 AT5G05080.1 27.586 145 91 2 9 153 15 145 4.07e-14 68.2
Msa0264220 AT5G05080.4 27.586 145 91 2 9 153 15 145 4.07e-14 68.2
Msa0264220 AT2G18600.1 28.571 133 81 2 31 163 57 175 4.27e-14 67.0
Msa0264220 AT2G18600.2 28.571 133 81 2 31 163 57 175 4.27e-14 67.0
Msa0264220 AT4G36800.2 29.661 118 70 1 42 159 66 170 6.84e-14 66.6
Msa0264220 AT4G36800.1 29.661 118 70 1 42 159 66 170 6.84e-14 66.6
Msa0264220 AT1G45050.1 30.973 113 62 3 9 120 20 117 1.11e-12 62.8
Msa0264220 AT1G63800.1 25.974 154 98 4 10 161 6 145 1.68e-12 62.8
Msa0264220 AT1G75440.1 30.833 120 67 3 1 119 12 116 1.84e-12 62.0
Msa0264220 AT5G42990.1 30.973 113 62 3 9 120 20 117 2.12e-12 62.0
Msa0264220 AT2G46030.5 27.273 154 96 4 10 161 6 145 2.72e-12 62.0
Msa0264220 AT2G46030.1 27.273 154 96 4 10 161 6 145 2.72e-12 62.0
Msa0264220 AT2G46030.4 30.709 127 73 3 37 161 35 148 2.80e-12 62.0
Msa0264220 AT2G46030.2 30.709 127 73 3 37 161 35 148 2.80e-12 62.0
Msa0264220 AT1G63800.2 28.906 128 76 3 36 161 16 130 5.23e-12 61.2
Msa0264220 AT2G46030.3 27.273 154 96 4 10 161 78 217 8.29e-12 62.0
Msa0264220 AT5G41340.1 28.906 128 76 3 36 161 31 145 9.22e-12 60.8
Msa0264220 AT3G17000.1 30.769 130 60 6 11 131 18 126 1.20e-11 62.0
Msa0264220 AT1G17280.4 29.861 144 78 6 1 137 1 128 2.43e-11 60.5
Msa0264220 AT1G45050.2 34.118 85 53 2 9 92 20 102 4.77e-11 57.4
Msa0264220 AT5G50430.1 30.137 146 69 7 1 137 1 122 7.04e-11 59.3
Msa0264220 AT5G50430.2 30.137 146 69 7 1 137 1 122 7.04e-11 59.3
Msa0264220 AT1G17280.9 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0264220 AT1G17280.7 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0264220 AT1G17280.6 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0264220 AT1G17280.2 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0264220 AT1G17280.5 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0264220 AT1G17280.3 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0264220 AT1G17280.1 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0264220 AT1G17280.8 30.137 146 69 7 1 137 1 122 8.75e-11 58.9

Find 67 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGGAGTGTAACCATAAT+TGG 0.137403 2_2:+64117476 Msa0264220:CDS
AACACTTGAGCCTAAATATT+TGG 0.152712 2_2:+64117081 None:intergenic
CTTTGCTAAAATTTGATATT+AGG 0.200359 2_2:+64121737 Msa0264220:three_prime_UTR
AGTATCATATCGATGCTTTC+TGG 0.256685 2_2:+64119965 Msa0264220:CDS
GAGAGACGATTTCAAGAAAA+AGG 0.291595 2_2:+64121401 Msa0264220:CDS
GCTTATACAATATTATGATA+TGG 0.305572 2_2:+64121778 Msa0264220:three_prime_UTR
TGTATCTGGTGGCCCAATTA+TGG 0.313031 2_2:-64117489 None:intergenic
TTCACTGATGGTGGACTGTT+TGG 0.316044 2_2:-64118724 None:intergenic
AGAACTTACTAAAGTGTATC+TGG 0.332749 2_2:-64117503 None:intergenic
AGGCCATGAAAGAGTGAGTT+TGG 0.346682 2_2:-64117266 None:intergenic
CTTGCAAGCTCATAACCATT+TGG 0.354028 2_2:-64119071 None:intergenic
TTTGCCGGAGATTCATCATT+AGG 0.355777 2_2:-64119989 None:intergenic
ATAAATGCAACCAAATATTT+AGG 0.361844 2_2:-64117091 None:intergenic
ACTGCAGCTTCAACATTTGC+CGG 0.368423 2_2:-64120004 None:intergenic
TTTGAAGGAGGAGGCTTGCT+TGG 0.372918 2_2:-64117290 None:intergenic
TCTCCAAACTCACTCTTTCA+TGG 0.373541 2_2:+64117263 Msa0264220:exon
ATATCTATTCTTCATCCTCC+TGG 0.379234 2_2:+64119041 Msa0264220:CDS
CTACACAGATCAACGGTAAC+AGG 0.379251 2_2:-64121533 None:intergenic
TTGAAGGAGGAGGCTTGCTT+GGG 0.393797 2_2:-64117289 None:intergenic
CGATTTAATTCATGTCGATC+AGG 0.399192 2_2:-64117133 None:intergenic
TGCAGAAGGAGTGGAGAGAC+AGG 0.411818 2_2:+64121379 Msa0264220:intron
TGAAGTTCACTTCAGAGATA+TGG 0.412336 2_2:+64118743 Msa0264220:CDS
TTGCAAGCTCATAACCATTT+GGG 0.423493 2_2:-64119070 None:intergenic
CATAATATTGTATAAGCAAA+AGG 0.430377 2_2:-64121772 None:intergenic
GGCAATTATACCAGTAAAGA+AGG 0.436226 2_2:-64121828 None:intergenic
GATATGCAAACCCGCCCATC+AGG 0.446681 2_2:-64119023 None:intergenic
TATCTATTCTTCATCCTCCT+GGG 0.449275 2_2:+64119042 Msa0264220:CDS
AATGGAGTGTAACCATAATT+GGG 0.465426 2_2:+64117477 Msa0264220:CDS
GATCTGTGTAGACTTGCTAT+TGG 0.465836 2_2:+64121545 Msa0264220:three_prime_UTR
AAGGAGGAGGCTTGCTTGGG+AGG 0.498537 2_2:-64117286 None:intergenic
ATACAACTTAATGTAAGGAT+TGG 0.511298 2_2:+64121506 Msa0264220:three_prime_UTR
AGAACATACAACTTAATGTA+AGG 0.513455 2_2:+64121501 Msa0264220:three_prime_UTR
GTATTTGCAGTATATCCTGA+TGG 0.513643 2_2:+64119008 Msa0264220:intron
TGGTCCTAATGATGAATCTC+CGG 0.517026 2_2:+64119985 Msa0264220:CDS
TTGTTGTATTCTTCTCTACA+TGG 0.521579 2_2:+64121604 Msa0264220:three_prime_UTR
CCTCCTGGGGATGACCCAAA+TGG 0.528218 2_2:+64119056 Msa0264220:CDS
TATAAGCAAAAGGCAAAACT+TGG 0.530566 2_2:-64121762 None:intergenic
TAACCATTTGGGTCATCCCC+AGG 0.531119 2_2:-64119059 None:intergenic
ATGAGCTTGCAAGTGAGCGC+TGG 0.535537 2_2:+64119081 Msa0264220:CDS
TGCAGTATATCCTGATGGGC+GGG 0.538018 2_2:+64119013 Msa0264220:intron
AATAGCAAGAAACGAGGGGC+CGG 0.538604 2_2:-64121469 None:intergenic
TATTTGCAGTATATCCTGAT+GGG 0.549933 2_2:+64119009 Msa0264220:intron
TCAATTTCTTGTAGTGAAGG+AGG 0.560751 2_2:+64118664 Msa0264220:intron
CCAGCGGAAAAGCCATCGAC+GGG 0.566293 2_2:-64117428 None:intergenic
GAAATGTTGTGATTCACAGC+CGG 0.566809 2_2:+64121450 Msa0264220:exon
TTGCAGTATATCCTGATGGG+CGG 0.572889 2_2:+64119012 Msa0264220:intron
CATACAAATAATCGAAGTGT+GGG 0.573196 2_2:+64117178 Msa0264220:five_prime_UTR
TGTTTATATTGCAGAAGGAG+TGG 0.573707 2_2:+64121370 Msa0264220:intron
CTTTGTAAACATCCCGTCGA+TGG 0.573847 2_2:+64117416 Msa0264220:CDS
ATCTATTCTTCATCCTCCTG+GGG 0.574309 2_2:+64119043 Msa0264220:CDS
ACATACAAATAATCGAAGTG+TGG 0.584409 2_2:+64117177 Msa0264220:five_prime_UTR
CCGATGTGTGCGGAAGTCAC+AGG 0.588338 2_2:+64121428 Msa0264220:CDS
GAAGTGAACTTCACTGATGG+TGG 0.596810 2_2:-64118733 None:intergenic
ACCAGCGGAAAAGCCATCGA+CGG 0.610363 2_2:-64117429 None:intergenic
GGACTGTTTGGATAGTTCGA+CGG 0.629490 2_2:-64118712 None:intergenic
GTTCGACGGAAAGCTCATGA+TGG 0.632587 2_2:-64118698 None:intergenic
TTCACAATAGCAAGAAACGA+GGG 0.635127 2_2:-64121474 None:intergenic
AGCAAGTCTACACAGATCAA+CGG 0.641649 2_2:-64121540 None:intergenic
TCAGAGATATGGCATCCCAA+TGG 0.645768 2_2:+64118754 Msa0264220:CDS
CCTGTGACTTCCGCACACAT+CGG 0.655883 2_2:-64121428 None:intergenic
TCTGAAGTGAACTTCACTGA+TGG 0.656247 2_2:-64118736 None:intergenic
AAAAGGTTAGCCGATGTGTG+CGG 0.675247 2_2:+64121418 Msa0264220:CDS
CTTCACAATAGCAAGAAACG+AGG 0.678923 2_2:-64121475 None:intergenic
ACTTACTAAAGTGTATCTGG+TGG 0.687155 2_2:-64117500 None:intergenic
GGTTTCGTCGACTAAACCAG+CGG 0.711029 2_2:-64117444 None:intergenic
CCATTTGGGTCATCCCCAGG+AGG 0.711844 2_2:-64119056 None:intergenic
TCACAATAGCAAGAAACGAG+GGG 0.727949 2_2:-64121473 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAGTTAAAAAGAAAT+TGG + chr2_2:64119551-64119570 Msa0264220:intron 10.0%
!! CTTATAAAATGATCATTTAT+TGG + chr2_2:64117599-64117618 Msa0264220:intron 15.0%
!!! TTTTAATTTATACTTATTGG+TGG + chr2_2:64117667-64117686 Msa0264220:intron 15.0%
!!! TTTAATTTATACTTATTGGT+GGG + chr2_2:64117668-64117687 Msa0264220:intron 15.0%
!! ATAAAAAAGAATACAGATTA+TGG + chr2_2:64117819-64117838 Msa0264220:intron 15.0%
!! AAATATCATAATCAATAAAC+CGG - chr2_2:64118226-64118245 None:intergenic 15.0%
!! TTGATTATGATATTTATTCT+AGG + chr2_2:64118231-64118250 Msa0264220:intron 15.0%
!! AAATAAACGAATTGAATTTA+TGG - chr2_2:64119140-64119159 None:intergenic 15.0%
!!! ATTTTAAAAAAATTGGTCAT+CGG - chr2_2:64119532-64119551 None:intergenic 15.0%
!! ATTAAATCGTTATGTTAAAA+AGG - chr2_2:64119730-64119749 None:intergenic 15.0%
!! AATCATGTAAATAAGAAAAA+AGG - chr2_2:64120038-64120057 None:intergenic 15.0%
!!! GTTTTACTAATAATATGTTA+TGG + chr2_2:64120160-64120179 Msa0264220:intron 15.0%
!! TAATATCAATATAGTAGTTT+AGG + chr2_2:64120473-64120492 Msa0264220:intron 15.0%
!!! ATAAGTTTTTTGAGACTATT+CGG - chr2_2:64118122-64118141 None:intergenic 20.0%
!! AAAACTTATACCAGTTTATA+AGG + chr2_2:64118133-64118152 Msa0264220:intron 20.0%
!!! TTTTATTTGACCTTATAAAC+TGG - chr2_2:64118146-64118165 None:intergenic 20.0%
!! AATATCATAATCAATAAACC+GGG - chr2_2:64118225-64118244 None:intergenic 20.0%
!!! TTTATTCTAGGTTTTTTTGT+TGG + chr2_2:64118243-64118262 Msa0264220:intron 20.0%
!! TATTGTAAAACAAGAACAAA+AGG - chr2_2:64118311-64118330 None:intergenic 20.0%
!! ATTAATTTACTTCCTATGAT+TGG + chr2_2:64118344-64118363 Msa0264220:intron 20.0%
!! TTATTCATAAGCAAATAAAC+AGG - chr2_2:64119904-64119923 None:intergenic 20.0%
!! ACAATTATCTAGATCAATAT+CGG - chr2_2:64120129-64120148 None:intergenic 20.0%
!!! AGTGTTTTACTAGTAAATAA+AGG - chr2_2:64120194-64120213 None:intergenic 20.0%
!! GAGATATCTACATAAATAAT+TGG - chr2_2:64120250-64120269 None:intergenic 20.0%
!!! TGGTTTTAATATTTTCTTGT+GGG - chr2_2:64120713-64120732 None:intergenic 20.0%
!! TTAAGAAAGCTATAAAAAAC+AGG - chr2_2:64120992-64121011 None:intergenic 20.0%
!!! CTAATATCAAATTTTAGCAA+AGG - chr2_2:64121739-64121758 None:intergenic 20.0%
!! CTTTGCTAAAATTTGATATT+AGG + chr2_2:64121737-64121756 Msa0264220:three_prime_UTR 20.0%
!! CATAATATTGTATAAGCAAA+AGG - chr2_2:64121775-64121794 None:intergenic 20.0%
!! GCTTATACAATATTATGATA+TGG + chr2_2:64121778-64121797 Msa0264220:three_prime_UTR 20.0%
!! ATTTATTGGATTTTCTGTGA+TGG + chr2_2:64117613-64117632 Msa0264220:intron 25.0%
!! TTTATTGGATTTTCTGTGAT+GGG + chr2_2:64117614-64117633 Msa0264220:intron 25.0%
!! ATTGATGATATTGTTTCATG+AGG + chr2_2:64117752-64117771 Msa0264220:intron 25.0%
! GTAAAAGAAGTGATATTTGA+AGG + chr2_2:64117792-64117811 Msa0264220:intron 25.0%
! TGTAAGCTTACATAAGTTAT+AGG + chr2_2:64117968-64117987 Msa0264220:intron 25.0%
!!! TAAGTTTTTTGAGACTATTC+GGG - chr2_2:64118121-64118140 None:intergenic 25.0%
! TAGGAAGTAAATTAATGATG+AGG - chr2_2:64118340-64118359 None:intergenic 25.0%
! GATGAAGTAAATTAATGATG+AGG - chr2_2:64118528-64118547 None:intergenic 25.0%
! ATTAATTTACTTCATCCGAT+TGG + chr2_2:64118532-64118551 Msa0264220:intron 25.0%
!!! GTAACATCCTATGTTTTTTA+AGG + chr2_2:64118859-64118878 Msa0264220:intron 25.0%
! TGTTGTTCCTTAAAAAACAT+AGG - chr2_2:64118869-64118888 None:intergenic 25.0%
! GACATTTCTTTGATTAAAAC+AGG + chr2_2:64118962-64118981 Msa0264220:intron 25.0%
! CATTATTCAATTGATATTGC+TGG + chr2_2:64119182-64119201 Msa0264220:intron 25.0%
! TAGATGCAAAATACTTGTAA+AGG + chr2_2:64119319-64119338 Msa0264220:intron 25.0%
! TAACACTTAAATTAGCTGTA+AGG - chr2_2:64119754-64119773 None:intergenic 25.0%
! TAAGTATAAAAAGAGAAGTG+TGG - chr2_2:64120079-64120098 None:intergenic 25.0%
! CTAATAATATGTTATGGACT+TGG + chr2_2:64120166-64120185 Msa0264220:intron 25.0%
!!! TGATACGTTGATAATAACTA+CGG + chr2_2:64120302-64120321 Msa0264220:intron 25.0%
! ATAATTAGTAGATACGAAAG+TGG + chr2_2:64120388-64120407 Msa0264220:intron 25.0%
! TAATTAGTAGATACGAAAGT+GGG + chr2_2:64120389-64120408 Msa0264220:intron 25.0%
!!! GTGGTTTTAATATTTTCTTG+TGG - chr2_2:64120714-64120733 None:intergenic 25.0%
! CTACTAGTAGTTATTATCAA+CGG + chr2_2:64120936-64120955 Msa0264220:intron 25.0%
! AAAAACAGGCAAAAGATATT+AGG - chr2_2:64120978-64120997 None:intergenic 25.0%
! ATGTGTAGTATTAGGAATTT+AGG + chr2_2:64121100-64121119 Msa0264220:intron 25.0%
! AGAACATACAACTTAATGTA+AGG + chr2_2:64121501-64121520 Msa0264220:three_prime_UTR 25.0%
! ATACAACTTAATGTAAGGAT+TGG + chr2_2:64121506-64121525 Msa0264220:three_prime_UTR 25.0%
!! AAATGTATTCTACGTGTTTT+TGG + chr2_2:64121657-64121676 Msa0264220:three_prime_UTR 25.0%
! AAATAATATGCCAGCAAAAA+TGG - chr2_2:64121852-64121871 None:intergenic 25.0%
ACATACAAATAATCGAAGTG+TGG + chr2_2:64117177-64117196 Msa0264220:five_prime_UTR 30.0%
CATACAAATAATCGAAGTGT+GGG + chr2_2:64117178-64117197 Msa0264220:five_prime_UTR 30.0%
TAAGCGATGCAATGAAAAAA+GGG - chr2_2:64117338-64117357 None:intergenic 30.0%
ATAAGCGATGCAATGAAAAA+AGG - chr2_2:64117339-64117358 None:intergenic 30.0%
GTAAGGTTAATCAGAAATAG+CGG - chr2_2:64117382-64117401 None:intergenic 30.0%
AAGATCTGTGAGAAAAAGTA+AGG - chr2_2:64117399-64117418 None:intergenic 30.0%
! ACGAAACCAACATTTTTGAA+TGG + chr2_2:64117459-64117478 Msa0264220:CDS 30.0%
TACACTCCATTCAAAAATGT+TGG - chr2_2:64117468-64117487 None:intergenic 30.0%
AATGGAGTGTAACCATAATT+GGG + chr2_2:64117477-64117496 Msa0264220:CDS 30.0%
AGAACTTACTAAAGTGTATC+TGG - chr2_2:64117506-64117525 None:intergenic 30.0%
! TTATTGGATTTTCTGTGATG+GGG + chr2_2:64117615-64117634 Msa0264220:intron 30.0%
!! TTTTCAGAGTTTGGTTCAAT+TGG + chr2_2:64117691-64117710 Msa0264220:intron 30.0%
ATAAGTTGTTTATCCGAACA+GGG - chr2_2:64117845-64117864 None:intergenic 30.0%
TATAAGTTGTTTATCCGAAC+AGG - chr2_2:64117846-64117865 None:intergenic 30.0%
!! AAAGTTTTGATAAGCTATCC+TGG + chr2_2:64118030-64118049 Msa0264220:intron 30.0%
CTTATATTCATAACTTCTCC+AGG - chr2_2:64118051-64118070 None:intergenic 30.0%
TGCAAATTATTATGCTTTCC+CGG + chr2_2:64118204-64118223 Msa0264220:intron 30.0%
TTGGTTTCATTTATTTGCAC+TGG + chr2_2:64118262-64118281 Msa0264220:intron 30.0%
TTTACTTCCTATGATTGGAT+TGG + chr2_2:64118349-64118368 Msa0264220:intron 30.0%
AAACAAATAAGCTGAGTAGT+TGG - chr2_2:64118446-64118465 None:intergenic 30.0%
AATTCCAAAACCAATCCAAT+CGG - chr2_2:64118550-64118569 None:intergenic 30.0%
! CTACAAGAAATTGAAAGCAT+TGG - chr2_2:64118658-64118677 None:intergenic 30.0%
CTTTCAATTTCTTGTAGTGA+AGG + chr2_2:64118661-64118680 Msa0264220:intron 30.0%
TATTTGCAGTATATCCTGAT+GGG + chr2_2:64119009-64119028 Msa0264220:intron 30.0%
GAGCATGCTTGTATTTAATA+GGG + chr2_2:64119260-64119279 Msa0264220:intron 30.0%
GTGATCATAACAAAAGTTGT+GGG + chr2_2:64119412-64119431 Msa0264220:intron 30.0%
!! AGATACTCTAAAATGAGTGA+TGG - chr2_2:64119627-64119646 None:intergenic 30.0%
!!! ATCACTCATTTTAGAGTATC+TGG + chr2_2:64119626-64119645 Msa0264220:intron 30.0%
TTAAACAACAAGTCTATAGC+AGG - chr2_2:64119696-64119715 None:intergenic 30.0%
ATAACTTTACTGAATGTCCT+TGG + chr2_2:64119809-64119828 Msa0264220:intron 30.0%
TAACTTTACTGAATGTCCTT+GGG + chr2_2:64119810-64119829 Msa0264220:intron 30.0%
TGATCTAGATAATTGTGCAA+AGG + chr2_2:64120133-64120152 Msa0264220:intron 30.0%
TAGTTTAGGCATTACTCTTT+AGG + chr2_2:64120487-64120506 Msa0264220:intron 30.0%
!!! TATGAGAATGCTTTTTCTCT+TGG + chr2_2:64120560-64120579 Msa0264220:intron 30.0%
! ATTCAAAGTATTCAAGACGT+GGG - chr2_2:64120753-64120772 None:intergenic 30.0%
! TATTCAAAGTATTCAAGACG+TGG - chr2_2:64120754-64120773 None:intergenic 30.0%
GTGTTAAACTAGTAACTACT+AGG + chr2_2:64120867-64120886 Msa0264220:intron 30.0%
!!! CTCTGTTTTAAGATTCCTTT+CGG + chr2_2:64121039-64121058 Msa0264220:intron 30.0%
!!! GTTGAACAAACAGCTTTTTT+CGG - chr2_2:64121165-64121184 None:intergenic 30.0%
TGCTATACACTGTATCAATT+AGG - chr2_2:64121294-64121313 None:intergenic 30.0%
!! GACAGTTTGGAATATTGTTT+TGG + chr2_2:64121324-64121343 Msa0264220:intron 30.0%
TGTGATGTTTATATTGCAGA+AGG + chr2_2:64121365-64121384 Msa0264220:intron 30.0%
TTGTTGTATTCTTCTCTACA+TGG + chr2_2:64121604-64121623 Msa0264220:three_prime_UTR 30.0%
TATAAGCAAAAGGCAAAACT+TGG - chr2_2:64121765-64121784 None:intergenic 30.0%
! TATCATTTTGCCTTCTTTAC+TGG + chr2_2:64121818-64121837 Msa0264220:three_prime_UTR 30.0%
CGATTTAATTCATGTCGATC+AGG - chr2_2:64117136-64117155 None:intergenic 35.0%
!!! TACCTTTGAGCTGTTTTTGA+AGG - chr2_2:64117308-64117327 None:intergenic 35.0%
GAATGGAGTGTAACCATAAT+TGG + chr2_2:64117476-64117495 Msa0264220:CDS 35.0%
ACTTACTAAAGTGTATCTGG+TGG - chr2_2:64117503-64117522 None:intergenic 35.0%
! TATTGGATTTTCTGTGATGG+GGG + chr2_2:64117616-64117635 Msa0264220:intron 35.0%
! ACTGGATTTTCATTAGCTGT+AGG + chr2_2:64118280-64118299 Msa0264220:intron 35.0%
!!! TCCTATGATTGGATTGGTTT+TGG + chr2_2:64118355-64118374 Msa0264220:intron 35.0%
TCCAAAACCAATCCAATCAT+AGG - chr2_2:64118359-64118378 None:intergenic 35.0%
TTTACTTCATCCGATTGGAT+TGG + chr2_2:64118537-64118556 Msa0264220:intron 35.0%
TCAATTTCTTGTAGTGAAGG+AGG + chr2_2:64118664-64118683 Msa0264220:intron 35.0%
TGAAGTTCACTTCAGAGATA+TGG + chr2_2:64118743-64118762 Msa0264220:CDS 35.0%
ATAGGATGTTACTGCAATAC+GGG - chr2_2:64118851-64118870 None:intergenic 35.0%
CATAGGATGTTACTGCAATA+CGG - chr2_2:64118852-64118871 None:intergenic 35.0%
TGAGAAAATCCAATGATGCA+CGG - chr2_2:64118937-64118956 None:intergenic 35.0%
GTATTTGCAGTATATCCTGA+TGG + chr2_2:64119008-64119027 Msa0264220:intron 35.0%
ATATCTATTCTTCATCCTCC+TGG + chr2_2:64119041-64119060 Msa0264220:CDS 35.0%
TATCTATTCTTCATCCTCCT+GGG + chr2_2:64119042-64119061 Msa0264220:CDS 35.0%
TTGCAAGCTCATAACCATTT+GGG - chr2_2:64119073-64119092 None:intergenic 35.0%
! TTTTCACGTACTGTATGAAC+AGG - chr2_2:64119110-64119129 None:intergenic 35.0%
CGAGCATGCTTGTATTTAAT+AGG + chr2_2:64119259-64119278 Msa0264220:intron 35.0%
CGTGATCATAACAAAAGTTG+TGG + chr2_2:64119411-64119430 Msa0264220:intron 35.0%
!! ACTCTAAAATGAGTGATGGT+CGG - chr2_2:64119623-64119642 None:intergenic 35.0%
CTATAGCAGGTAAACATTAC+AGG - chr2_2:64119683-64119702 None:intergenic 35.0%
!! TAGACTTGTTGTTTAAGACC+TGG + chr2_2:64119700-64119719 Msa0264220:intron 35.0%
TTATGTTAAAAAGGCAAGCC+AGG - chr2_2:64119721-64119740 None:intergenic 35.0%
CAAGTATGTCAAAACACTCA+TGG - chr2_2:64119860-64119879 None:intergenic 35.0%
AGTATCATATCGATGCTTTC+TGG + chr2_2:64119965-64119984 Msa0264220:CDS 35.0%
CTAGTAAAACACTATGTCCT+TGG + chr2_2:64120201-64120220 Msa0264220:intron 35.0%
TGTAGCATTAAAGCAATCCA+AGG - chr2_2:64120221-64120240 None:intergenic 35.0%
TCGCTCATAAAACTCAAACT+TGG - chr2_2:64120431-64120450 None:intergenic 35.0%
!!! GTGTCGAGTGTTTTTTTGAA+GGG - chr2_2:64120648-64120667 None:intergenic 35.0%
! TTTTCTTGTGGGACTAAGTT+GGG - chr2_2:64120702-64120721 None:intergenic 35.0%
! ATTTTCTTGTGGGACTAAGT+TGG - chr2_2:64120703-64120722 None:intergenic 35.0%
ATGTCCATACTGATAATACG+TGG + chr2_2:64120891-64120910 Msa0264220:intron 35.0%
CATTCCACGTATTATCAGTA+TGG - chr2_2:64120898-64120917 None:intergenic 35.0%
CGAAAGGAATCTTAAAACAG+AGG - chr2_2:64121041-64121060 None:intergenic 35.0%
CAACACTAATGGTGACAATT+GGG - chr2_2:64121128-64121147 None:intergenic 35.0%
ACAACACTAATGGTGACAAT+TGG - chr2_2:64121129-64121148 None:intergenic 35.0%
ACCATTAGTGTTGTCAATTG+TGG + chr2_2:64121135-64121154 Msa0264220:intron 35.0%
TCCACAATTGACAACACTAA+TGG - chr2_2:64121139-64121158 None:intergenic 35.0%
!!! TGTGTCATTTTGAGTACTGA+AGG + chr2_2:64121192-64121211 Msa0264220:intron 35.0%
!!! AATGTGTACTTTTAGGACAG+AGG - chr2_2:64121257-64121276 None:intergenic 35.0%
! CAACAGCAATGTGTACTTTT+AGG - chr2_2:64121264-64121283 None:intergenic 35.0%
CTGCAATATAAACATCACAC+AGG - chr2_2:64121364-64121383 None:intergenic 35.0%
TGTTTATATTGCAGAAGGAG+TGG + chr2_2:64121370-64121389 Msa0264220:intron 35.0%
GAGAGACGATTTCAAGAAAA+AGG + chr2_2:64121401-64121420 Msa0264220:CDS 35.0%
TTCACAATAGCAAGAAACGA+GGG - chr2_2:64121477-64121496 None:intergenic 35.0%
!!! GTGTTTTTGGCTAGTGTTTT+GGG + chr2_2:64121670-64121689 Msa0264220:three_prime_UTR 35.0%
!!! TGTTTTTGGCTAGTGTTTTG+GGG + chr2_2:64121671-64121690 Msa0264220:three_prime_UTR 35.0%
GGCAATTATACCAGTAAAGA+AGG - chr2_2:64121831-64121850 None:intergenic 35.0%
!!! GGTATAATTGCCATTTTTGC+TGG + chr2_2:64121839-64121858 Msa0264220:three_prime_UTR 35.0%
TCTCCAAACTCACTCTTTCA+TGG + chr2_2:64117263-64117282 Msa0264220:exon 40.0%
!!! CTTTGAGCTGTTTTTGAAGG+AGG - chr2_2:64117305-64117324 None:intergenic 40.0%
CTCCTTCAAAAACAGCTCAA+AGG + chr2_2:64117303-64117322 Msa0264220:CDS 40.0%
!! ATTTTCTGTGATGGGGGTTT+TGG + chr2_2:64117622-64117641 Msa0264220:intron 40.0%
!!! ATTGGTGGGTTTTCAGAGTT+TGG + chr2_2:64117682-64117701 Msa0264220:intron 40.0%
! CAGAGTTTGGTTCAATTGGT+TGG + chr2_2:64117695-64117714 Msa0264220:intron 40.0%
ATACAGATTATGGCCCTGTT+CGG + chr2_2:64117829-64117848 Msa0264220:intron 40.0%
CTCAGCTTATTTGTTTGCAC+TGG + chr2_2:64118450-64118469 Msa0264220:intron 40.0%
! ACTGGATTTTCCTTAGCTGT+AGG + chr2_2:64118468-64118487 Msa0264220:intron 40.0%
ACAAGCAAATCCTACAGCTA+AGG - chr2_2:64118481-64118500 None:intergenic 40.0%
!!! TCATCCGATTGGATTGGTTT+TGG + chr2_2:64118543-64118562 Msa0264220:intron 40.0%
TGGCAAACAAATAAGCTGAG+TGG - chr2_2:64118638-64118657 None:intergenic 40.0%
! TCTGAAGTGAACTTCACTGA+TGG - chr2_2:64118739-64118758 None:intergenic 40.0%
CAGAGAGAAAACCAACCATT+GGG - chr2_2:64118772-64118791 None:intergenic 40.0%
TCAGAGAGAAAACCAACCAT+TGG - chr2_2:64118773-64118792 None:intergenic 40.0%
TGTTACTGCAATACGGGTAT+CGG - chr2_2:64118845-64118864 None:intergenic 40.0%
ATCTATTCTTCATCCTCCTG+GGG + chr2_2:64119043-64119062 Msa0264220:CDS 40.0%
CTTGCAAGCTCATAACCATT+TGG - chr2_2:64119074-64119093 None:intergenic 40.0%
!! TGGGCTTTTCTTTGTTTACG+AGG + chr2_2:64119431-64119450 Msa0264220:intron 40.0%
!! GGGCTTTTCTTTGTTTACGA+GGG + chr2_2:64119432-64119451 Msa0264220:intron 40.0%
AAATTGGTCATCGGATACGT+TGG - chr2_2:64119523-64119542 None:intergenic 40.0%
!! TATGCATCCAAGAGTATCCT+AGG + chr2_2:64119586-64119605 Msa0264220:intron 40.0%
TGATACTCCTAGGATACTCT+TGG - chr2_2:64119596-64119615 None:intergenic 40.0%
TACTGAATGTCCTTGGGATA+TGG + chr2_2:64119816-64119835 Msa0264220:intron 40.0%
GTATGTCAAAACACTCATGG+TGG - chr2_2:64119857-64119876 None:intergenic 40.0%
TGGTCCTAATGATGAATCTC+CGG + chr2_2:64119985-64120004 Msa0264220:CDS 40.0%
TTTGCCGGAGATTCATCATT+AGG - chr2_2:64119992-64120011 None:intergenic 40.0%
! AAAGAGAAGTGTGGTGAAGA+TGG - chr2_2:64120070-64120089 None:intergenic 40.0%
TTTGCGTCCTAGAGAAGTAA+AGG + chr2_2:64120099-64120118 Msa0264220:intron 40.0%
!!! TGCTTTTTCTCTTGGCATGT+TGG + chr2_2:64120568-64120587 Msa0264220:intron 40.0%
!!! TGTTTTTTTGAAGGGTGGGA+GGG - chr2_2:64120640-64120659 None:intergenic 40.0%
!!! CGAGTGTTTTTTTGAAGGGT+GGG - chr2_2:64120644-64120663 None:intergenic 40.0%
!!! TCGAGTGTTTTTTTGAAGGG+TGG - chr2_2:64120645-64120664 None:intergenic 40.0%
!!! GGTGTCGAGTGTTTTTTTGA+AGG - chr2_2:64120649-64120668 None:intergenic 40.0%
! AGTATTCAAGACGTGGGTTA+GGG - chr2_2:64120747-64120766 None:intergenic 40.0%
AAGTATTCAAGACGTGGGTT+AGG - chr2_2:64120748-64120767 None:intergenic 40.0%
GTGGAATGTCTTGTATGCAA+AGG + chr2_2:64120910-64120929 Msa0264220:intron 40.0%
!!! TTTTAAGATTCCTTTCGGCC+AGG + chr2_2:64121044-64121063 Msa0264220:intron 40.0%
TCTATTGAGATCCCTACACT+TGG + chr2_2:64121071-64121090 Msa0264220:intron 40.0%
GCACTTCAATCTTGACAGTT+TGG + chr2_2:64121311-64121330 Msa0264220:intron 40.0%
GAAATGTTGTGATTCACAGC+CGG + chr2_2:64121450-64121469 Msa0264220:exon 40.0%
TCACAATAGCAAGAAACGAG+GGG - chr2_2:64121476-64121495 None:intergenic 40.0%
CTTCACAATAGCAAGAAACG+AGG - chr2_2:64121478-64121497 None:intergenic 40.0%
AGCAAGTCTACACAGATCAA+CGG - chr2_2:64121543-64121562 None:intergenic 40.0%
!! GATCTGTGTAGACTTGCTAT+TGG + chr2_2:64121545-64121564 Msa0264220:three_prime_UTR 40.0%
!!! CGTGTTTTTGGCTAGTGTTT+TGG + chr2_2:64121669-64121688 Msa0264220:three_prime_UTR 40.0%
!!! GTTTTTGGCTAGTGTTTTGG+GGG + chr2_2:64121672-64121691 Msa0264220:three_prime_UTR 40.0%
! TTGGGGGACTAGTAGTTTAT+TGG + chr2_2:64121688-64121707 Msa0264220:three_prime_UTR 40.0%
AGGCCATGAAAGAGTGAGTT+TGG - chr2_2:64117269-64117288 None:intergenic 45.0%
!!! TGAGCTGTTTTTGAAGGAGG+AGG - chr2_2:64117302-64117321 None:intergenic 45.0%
CTTTGTAAACATCCCGTCGA+TGG + chr2_2:64117416-64117435 Msa0264220:CDS 45.0%
TGTATCTGGTGGCCCAATTA+TGG - chr2_2:64117492-64117511 None:intergenic 45.0%
GCTGAGTAGTTGGTCAAACT+CGG - chr2_2:64118436-64118455 None:intergenic 45.0%
! CTGAGTGGTTAGTCAAACTC+TGG - chr2_2:64118623-64118642 None:intergenic 45.0%
GGACTGTTTGGATAGTTCGA+CGG - chr2_2:64118715-64118734 None:intergenic 45.0%
!! TTCACTGATGGTGGACTGTT+TGG - chr2_2:64118727-64118746 None:intergenic 45.0%
GAAGTGAACTTCACTGATGG+TGG - chr2_2:64118736-64118755 None:intergenic 45.0%
TCAGAGATATGGCATCCCAA+TGG + chr2_2:64118754-64118773 Msa0264220:CDS 45.0%
AGATATGGCATCCCAATGGT+TGG + chr2_2:64118758-64118777 Msa0264220:intron 45.0%
! GTTCCCGATACGTTTTGCAT+CGG + chr2_2:64118896-64118915 Msa0264220:intron 45.0%
CATCCGATGCAAAACGTATC+GGG - chr2_2:64118902-64118921 None:intergenic 45.0%
GCATCCGATGCAAAACGTAT+CGG - chr2_2:64118903-64118922 None:intergenic 45.0%
! GTAACTTGTCCGTGCATCAT+TGG + chr2_2:64118925-64118944 Msa0264220:intron 45.0%
TTGCAGTATATCCTGATGGG+CGG + chr2_2:64119012-64119031 Msa0264220:intron 45.0%
GATACGTTGGAGATGCATCA+CGG - chr2_2:64119510-64119529 None:intergenic 45.0%
CGCTAGAGTAGAAGCTTTCT+CGG + chr2_2:64119650-64119669 Msa0264220:intron 45.0%
GCTAGAGTAGAAGCTTTCTC+GGG + chr2_2:64119651-64119670 Msa0264220:intron 45.0%
AAGTGGCATACCATATCCCA+AGG - chr2_2:64119829-64119848 None:intergenic 45.0%
ACTGCAGCTTCAACATTTGC+CGG - chr2_2:64120007-64120026 None:intergenic 45.0%
CGGTTTGCCTTTACTTCTCT+AGG - chr2_2:64120109-64120128 None:intergenic 45.0%
! TTTTCTCTTGGCATGTTGGC+AGG + chr2_2:64120572-64120591 Msa0264220:intron 45.0%
!!! GTGTTTTTTTGAAGGGTGGG+AGG - chr2_2:64120641-64120660 None:intergenic 45.0%
! GATTTTCACCCCTGAACTTG+TGG - chr2_2:64120680-64120699 None:intergenic 45.0%
GGCAAGGGATGTGTAGTATT+AGG + chr2_2:64121092-64121111 Msa0264220:intron 45.0%
! AAAAGGTTAGCCGATGTGTG+CGG + chr2_2:64121418-64121437 Msa0264220:CDS 45.0%
CTACACAGATCAACGGTAAC+AGG - chr2_2:64121536-64121555 None:intergenic 45.0%
!! ATTAATGAAAAATTAAAAAA+GGG - chr2_2:64117545-64117564 None:intergenic 5.0%
!! AATTAATGAAAAATTAAAAA+AGG - chr2_2:64117546-64117565 None:intergenic 5.0%
!!! TTTTTTTAATTTATACTTAT+TGG + chr2_2:64117664-64117683 Msa0264220:intron 5.0%
!!! CTTATTAATTTTAAAAAAAT+TGG - chr2_2:64119539-64119558 None:intergenic 5.0%
! TTGAAGGAGGAGGCTTGCTT+GGG - chr2_2:64117292-64117311 None:intergenic 50.0%
! TTTGAAGGAGGAGGCTTGCT+TGG - chr2_2:64117293-64117312 None:intergenic 50.0%
! GGTTTCGTCGACTAAACCAG+CGG - chr2_2:64117447-64117466 None:intergenic 50.0%
GTTCGACGGAAAGCTCATGA+TGG - chr2_2:64118701-64118720 None:intergenic 50.0%
! TGCAGTATATCCTGATGGGC+GGG + chr2_2:64119013-64119032 Msa0264220:intron 50.0%
TAACCATTTGGGTCATCCCC+AGG - chr2_2:64119062-64119081 None:intergenic 50.0%
GGTCGGATACTGATACTCCT+AGG - chr2_2:64119606-64119625 None:intergenic 50.0%
!! CACTCATGGTGGACAAGAAG+TGG - chr2_2:64119846-64119865 None:intergenic 50.0%
TTCCACGTATGCTCTCTTGC+AGG + chr2_2:64119925-64119944 Msa0264220:intron 50.0%
! TACCTGCAAGAGAGCATACG+TGG - chr2_2:64119930-64119949 None:intergenic 50.0%
ATGTTGGCAGGCTTGGCAAT+GGG + chr2_2:64120584-64120603 Msa0264220:intron 50.0%
AATAGACATGCCTGGCCGAA+AGG - chr2_2:64121057-64121076 None:intergenic 50.0%
GGGATCTCAATAGACATGCC+TGG - chr2_2:64121065-64121084 None:intergenic 50.0%
TGAGATCCCTACACTTGGCA+AGG + chr2_2:64121076-64121095 Msa0264220:intron 50.0%
GAGATCCCTACACTTGGCAA+GGG + chr2_2:64121077-64121096 Msa0264220:intron 50.0%
CACATCCCTTGCCAAGTGTA+GGG - chr2_2:64121085-64121104 None:intergenic 50.0%
ACACATCCCTTGCCAAGTGT+AGG - chr2_2:64121086-64121105 None:intergenic 50.0%
AATAGCAAGAAACGAGGGGC+CGG - chr2_2:64121472-64121491 None:intergenic 50.0%
ACCAGCGGAAAAGCCATCGA+CGG - chr2_2:64117432-64117451 None:intergenic 55.0%
GATATGCAAACCCGCCCATC+AGG - chr2_2:64119026-64119045 None:intergenic 55.0%
ATGAGCTTGCAAGTGAGCGC+TGG + chr2_2:64119081-64119100 Msa0264220:CDS 55.0%
TCTTGGCATGTTGGCAGGCT+TGG + chr2_2:64120577-64120596 Msa0264220:intron 55.0%
CATGTTGGCAGGCTTGGCAA+TGG + chr2_2:64120583-64120602 Msa0264220:intron 55.0%
TGTTGGCAGGCTTGGCAATG+GGG + chr2_2:64120585-64120604 Msa0264220:intron 55.0%
CCTGAACTTGTGGCAGGAAG+GGG - chr2_2:64120670-64120689 None:intergenic 55.0%
CCCTGAACTTGTGGCAGGAA+GGG - chr2_2:64120671-64120690 None:intergenic 55.0%
CCCTTCCTGCCACAAGTTCA+GGG + chr2_2:64120668-64120687 Msa0264220:intron 55.0%
CCTTCCTGCCACAAGTTCAG+GGG + chr2_2:64120669-64120688 Msa0264220:intron 55.0%
TTCACCCCTGAACTTGTGGC+AGG - chr2_2:64120676-64120695 None:intergenic 55.0%
TGCAGAAGGAGTGGAGAGAC+AGG + chr2_2:64121379-64121398 Msa0264220:intron 55.0%
CCTGTGACTTCCGCACACAT+CGG - chr2_2:64121431-64121450 None:intergenic 55.0%
! AAGGAGGAGGCTTGCTTGGG+AGG - chr2_2:64117289-64117308 None:intergenic 60.0%
CCAGCGGAAAAGCCATCGAC+GGG - chr2_2:64117431-64117450 None:intergenic 60.0%
CCATTTGGGTCATCCCCAGG+AGG - chr2_2:64119059-64119078 None:intergenic 60.0%
CCTCCTGGGGATGACCCAAA+TGG + chr2_2:64119056-64119075 Msa0264220:CDS 60.0%
GGCGTGTCGAGAATGAGACG+TGG + chr2_2:64120323-64120342 Msa0264220:intron 60.0%
GCTTGGCAATGGGGCAGGTA+GGG + chr2_2:64120594-64120613 Msa0264220:intron 60.0%
CCCCTTCCTGCCACAAGTTC+AGG + chr2_2:64120667-64120686 Msa0264220:intron 60.0%
CCCCTGAACTTGTGGCAGGA+AGG - chr2_2:64120672-64120691 None:intergenic 60.0%
!! GACGTGGGTTAGGGTGAGCA+GGG - chr2_2:64120738-64120757 None:intergenic 60.0%
!! AGACGTGGGTTAGGGTGAGC+AGG - chr2_2:64120739-64120758 None:intergenic 60.0%
CCGATGTGTGCGGAAGTCAC+AGG + chr2_2:64121428-64121447 Msa0264220:CDS 60.0%
! CCCGTCGATGGCTTTTCCGC+TGG + chr2_2:64117428-64117447 Msa0264220:CDS 65.0%
GGCTTGGCAATGGGGCAGGT+AGG + chr2_2:64120593-64120612 Msa0264220:intron 65.0%
GGCAATGGGGCAGGTAGGGA+CGG + chr2_2:64120598-64120617 Msa0264220:intron 65.0%
GCAATGGGGCAGGTAGGGAC+GGG + chr2_2:64120599-64120618 Msa0264220:intron 65.0%
GGGTTAGGGTGAGCAGGGTG+TGG - chr2_2:64120733-64120752 None:intergenic 65.0%
GGCAGGCTTGGCAATGGGGC+AGG + chr2_2:64120589-64120608 Msa0264220:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 64117093 64121885 64117093 ID=Msa0264220;Name=Msa0264220
chr2_2 mRNA 64117093 64121885 64117093 ID=Msa0264220-mRNA-1;Parent=Msa0264220;Name=Msa0264220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=189|1|1|1|1|1|6|424|166
chr2_2 exon 64117093 64117324 64117093 ID=Msa0264220-mRNA-1:exon:19965;Parent=Msa0264220-mRNA-1
chr2_2 exon 64117414 64117516 64117414 ID=Msa0264220-mRNA-1:exon:19966;Parent=Msa0264220-mRNA-1
chr2_2 exon 64118678 64118775 64118678 ID=Msa0264220-mRNA-1:exon:19967;Parent=Msa0264220-mRNA-1
chr2_2 exon 64119018 64119118 64119018 ID=Msa0264220-mRNA-1:exon:19968;Parent=Msa0264220-mRNA-1
chr2_2 exon 64119947 64120024 64119947 ID=Msa0264220-mRNA-1:exon:19969;Parent=Msa0264220-mRNA-1
chr2_2 exon 64121384 64121885 64121384 ID=Msa0264220-mRNA-1:exon:19970;Parent=Msa0264220-mRNA-1
chr2_2 five_prime_UTR 64117093 64117281 64117093 ID=Msa0264220-mRNA-1:five_prime_utr;Parent=Msa0264220-mRNA-1
chr2_2 CDS 64117282 64117324 64117282 ID=Msa0264220-mRNA-1:cds;Parent=Msa0264220-mRNA-1
chr2_2 CDS 64117414 64117516 64117414 ID=Msa0264220-mRNA-1:cds;Parent=Msa0264220-mRNA-1
chr2_2 CDS 64118678 64118775 64118678 ID=Msa0264220-mRNA-1:cds;Parent=Msa0264220-mRNA-1
chr2_2 CDS 64119018 64119118 64119018 ID=Msa0264220-mRNA-1:cds;Parent=Msa0264220-mRNA-1
chr2_2 CDS 64119947 64120024 64119947 ID=Msa0264220-mRNA-1:cds;Parent=Msa0264220-mRNA-1
chr2_2 CDS 64121384 64121461 64121384 ID=Msa0264220-mRNA-1:cds;Parent=Msa0264220-mRNA-1
chr2_2 three_prime_UTR 64121462 64121885 64121462 ID=Msa0264220-mRNA-1:three_prime_utr;Parent=Msa0264220-mRNA-1
Gene Sequence

>Msa0264220

ATGGCCTCCCAAGCAAGCCTCCTCCTTCAAAAACAGCTCAAAGATCTTTGTAAACATCCCGTCGATGGCTTTTCCGCTGGTTTAGTCGACGAAACCAACATTTTTGAATGGAGTGTAACCATAATTGGGCCACCAGATACACTTTATGAAGGAGGATTTTTCAATGCCATCATGAGCTTTCCGTCGAACTATCCAAACAGTCCACCATCAGTGAAGTTCACTTCAGAGATATGGCATCCCAATGTATATCCTGATGGGCGGGTTTGCATATCTATTCTTCATCCTCCTGGGGATGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTGTTGAGTATCATATCGATGCTTTCTGGTCCTAATGATGAATCTCCGGCAAATGTTGAAGCTGCAAAGGAGTGGAGAGACAGGAGAGACGATTTCAAGAAAAAGGTTAGCCGATGTGTGCGGAAGTCACAGGAAATGTTGTGA
Protein sequence

>Msa0264220

MASQASLLLQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML*