AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1463500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463500 MtrunA17_Chr1g0203821 97.196 214 6 0 6 219 167 380 3.64e-151 424
Msa1463500 MtrunA17_Chr4g0024091 32.624 141 91 3 20 158 215 353 4.57e-20 87.4
Msa1463500 MtrunA17_Chr8g0365301 94.286 35 2 0 155 189 1 35 1.34e-16 71.2
Msa1463500 MtrunA17_Chr4g0047511 91.429 35 3 0 155 189 1 35 5.62e-16 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463500 AT5G52030.1 72.170 212 52 3 6 210 37 248 1.92e-98 287
Msa1463500 AT5G52030.2 72.170 212 52 3 6 210 181 392 2.98e-96 286
Msa1463500 AT1G05270.1 34.356 163 96 5 1 158 164 320 7.90e-20 87.0
Msa1463500 AT2G32340.1 33.594 128 81 3 33 158 182 307 1.41e-16 77.8

Find 58 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTGATTGGCATTGTCTTA+TGG 0.221376 tig0043324:-8276 Msa1463500:CDS
AGGCTGTGAATAACTGTAAA+AGG 0.224403 tig0043324:-8459 Msa1463500:CDS
ACCATTTATGAATTCATATA+AGG 0.233556 tig0043324:+8252 Msa1463500:intergenic
TCAAATATTGACCGCCCTTT+TGG 0.242909 tig0043324:-9848 Msa1463500:CDS
GATAAATGGTGGAACATATA+AGG 0.256164 tig0043324:-8208 Msa1463500:three_prime_UTR
AGTTGGCGCACAACTAGTTT+TGG 0.268585 tig0043324:-9701 Msa1463500:CDS
GGTGATTGGCATTGTCTTAT+GGG 0.292214 tig0043324:-8275 Msa1463500:CDS
GCCTTATATGAATTCATAAA+TGG 0.312892 tig0043324:-8253 Msa1463500:CDS
CATGTATAAGAGGCGGCAAT+AGG 0.338425 tig0043324:+8636 Msa1463500:intergenic
GTACATACTGTTATTTCAAT+TGG 0.373632 tig0043324:+9670 Msa1463500:intergenic
ATAAATGGTGGAACATATAA+GGG 0.380108 tig0043324:-8207 Msa1463500:three_prime_UTR
TCAAATGATGGGGCTTCTAA+TGG 0.385391 tig0043324:-8337 Msa1463500:CDS
GAGCATGGAAGGCTTTGAAT+TGG 0.390401 tig0043324:-9464 Msa1463500:CDS
TTGAGATTTCGAGACCTTGC+TGG 0.392448 tig0043324:-8367 Msa1463500:CDS
TATGCACTGTTAGCTGATAC+AGG 0.417737 tig0043324:-8394 Msa1463500:CDS
TTTGGCATTGAGATTACTCC+TGG 0.424534 tig0043324:-9894 Msa1463500:CDS
AAAAGGGTGGTAGGTGTGAT+TGG 0.444853 tig0043324:-8442 Msa1463500:CDS
TTAGTGAGGGACACGGTGAT+TGG 0.458487 tig0043324:-8289 Msa1463500:CDS
ATCAGGTGGTCAAACTGCTT+TGG 0.458604 tig0043324:-9912 Msa1463500:CDS
TGAATTACCTCATCTCCAAA+AGG 0.477616 tig0043324:+9830 Msa1463500:intergenic
CTAGTCAGTGAAAGTGATAC+AGG 0.487601 tig0043324:-7957 Msa1463500:three_prime_UTR
GTGGTAGGTGTGATTGGAAA+AGG 0.496641 tig0043324:-8436 Msa1463500:CDS
TCGAGAGATTAATCAATGGC+TGG 0.500896 tig0043324:+7915 Msa1463500:intergenic
CGAAAAGTGTCAGAGGAAGT+TGG 0.501232 tig0043324:-9718 Msa1463500:CDS
TTGTTCTGCAGTATCTTGCA+TGG 0.505968 tig0043324:-8498 Msa1463500:intron
ATGATGGGGCTTCTAATGGC+TGG 0.510475 tig0043324:-8333 Msa1463500:CDS
GTATCTCGTTCATGTATAAG+AGG 0.521701 tig0043324:+8626 Msa1463500:intergenic
ATGTATAAGAGGCGGCAATA+GGG 0.521908 tig0043324:+8637 Msa1463500:intergenic
GATGTATTCTTGTTAGCTCT+AGG 0.522752 tig0043324:-8060 Msa1463500:three_prime_UTR
GGCTGGAGTTTACTAAAGAA+AGG 0.530109 tig0043324:+7932 Msa1463500:intergenic
TGAGATTTCGAGACCTTGCT+GGG 0.531713 tig0043324:-8366 Msa1463500:CDS
GAATTACCTCATCTCCAAAA+GGG 0.540567 tig0043324:+9831 Msa1463500:intergenic
TATTCTTGTTAGCTCTAGGA+AGG 0.543152 tig0043324:-8056 Msa1463500:three_prime_UTR
GTAGCTTCAGAGAGCATGGA+AGG 0.554057 tig0043324:-9475 Msa1463500:intron
GGCTGTGAATAACTGTAAAA+GGG 0.564509 tig0043324:-8458 Msa1463500:CDS
ATTGGAAAAGGCCACATGAA+TGG 0.567386 tig0043324:-8424 Msa1463500:CDS
CAGAAAGCAAGTTCAGATGA+TGG 0.573617 tig0043324:-8701 Msa1463500:CDS
CATTTCTACAAATAAGCTTG+AGG 0.575953 tig0043324:-9385 Msa1463500:intron
ATGGTCTCTGAAGCGGAGCA+AGG 0.578967 tig0043324:-8479 Msa1463500:CDS
TTATATGAATTCATAAATGG+TGG 0.584002 tig0043324:-8250 Msa1463500:CDS
ATCTTGCATGGTCTCTGAAG+CGG 0.593986 tig0043324:-8486 Msa1463500:CDS
CCCTCACTAAACTCTTGACT+AGG 0.596428 tig0043324:+8302 Msa1463500:intergenic
ATAAGAGGCGGCAATAGGGA+TGG 0.604140 tig0043324:+8641 Msa1463500:intergenic
CGCTGCTCGAAAAGTGTCAG+AGG 0.606032 tig0043324:-9725 Msa1463500:CDS
AATAACTGTAAAAGGGTGGT+AGG 0.617141 tig0043324:-8451 Msa1463500:CDS
GTATCACTTTCACTGACTAG+AGG 0.626809 tig0043324:+7960 Msa1463500:intergenic
TTTATGATCGAAATATCAGG+TGG 0.645929 tig0043324:-9926 Msa1463500:exon
CTGATGAAGATGTTATTCCA+CGG 0.647888 tig0043324:+9409 Msa1463500:intergenic
TTATTGACGATAGTTATCCG+TGG 0.648146 tig0043324:-9426 Msa1463500:CDS
TAAATGGTGGAACATATAAG+GGG 0.654317 tig0043324:-8206 Msa1463500:three_prime_UTR
ACCTAGTCAAGAGTTTAGTG+AGG 0.655508 tig0043324:-8303 Msa1463500:CDS
CAAGAGTTTAGTGAGGGACA+CGG 0.657364 tig0043324:-8296 Msa1463500:CDS
CCTAGTCAAGAGTTTAGTGA+GGG 0.661710 tig0043324:-8302 Msa1463500:CDS
ATGCACTGTTAGCTGATACA+GGG 0.664898 tig0043324:-8393 Msa1463500:CDS
CATATATTACACCATTCATG+TGG 0.675235 tig0043324:+8413 Msa1463500:intergenic
TGTGAATAACTGTAAAAGGG+TGG 0.676596 tig0043324:-8455 Msa1463500:CDS
TCTCGTTCATGTATAAGAGG+CGG 0.680308 tig0043324:+8629 Msa1463490:intergenic
TTACCTCATCTCCAAAAGGG+CGG 0.697162 tig0043324:+9834 Msa1463490:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAAATATCATTTTAAAAG+GGG + tig0043324:8597-8616 Msa1463500:intergenic 15.0%
!!! GACAAAATATCATTTTAAAA+GGG + tig0043324:8598-8617 Msa1463500:intergenic 15.0%
!!! TTTTTTTTTTTTGAACAAAG+TGG - tig0043324:8711-8730 Msa1463500:intron 15.0%
!! AAAAATACTATTGTTTACTT+GGG + tig0043324:9358-9377 Msa1463500:intergenic 15.0%
!! AAAAAATACTATTGTTTACT+TGG + tig0043324:9359-9378 Msa1463500:intergenic 15.0%
!! TGACAAAAATGAAAAATATA+AGG + tig0043324:9699-9718 Msa1463500:intergenic 15.0%
!!! TTTTACTACATTTGTATATA+TGG + tig0043324:9877-9896 Msa1463500:intergenic 15.0%
!!! ACAAAATATCATTTTAAAAG+GGG + tig0043324:8597-8616 Msa1463500:intergenic 15.0%
!!! GACAAAATATCATTTTAAAA+GGG + tig0043324:8598-8617 Msa1463500:intergenic 15.0%
!!! TTTTTTTTTTTTGAACAAAG+TGG - tig0043324:8711-8730 Msa1463500:intron 15.0%
!! AAAAATACTATTGTTTACTT+GGG + tig0043324:9358-9377 Msa1463500:intergenic 15.0%
!! AAAAAATACTATTGTTTACT+TGG + tig0043324:9359-9378 Msa1463500:intergenic 15.0%
!! TGACAAAAATGAAAAATATA+AGG + tig0043324:9699-9718 Msa1463500:intergenic 15.0%
!!! TTTTACTACATTTGTATATA+TGG + tig0043324:9877-9896 Msa1463500:intergenic 15.0%
!!! GGACAAAATATCATTTTAAA+AGG + tig0043324:8599-8618 Msa1463500:intergenic 20.0%
!! ACCATTTATGAATTCATATA+AGG + tig0043324:9630-9649 Msa1463500:intergenic 20.0%
!! TTATATGAATTCATAAATGG+TGG - tig0043324:9629-9648 Msa1463500:intron 20.0%
!!! TTTCTTTTTGACTAGATAAA+TGG - tig0043324:9657-9676 Msa1463500:intron 20.0%
!!! GGACAAAATATCATTTTAAA+AGG + tig0043324:8599-8618 Msa1463500:intergenic 20.0%
!! ACCATTTATGAATTCATATA+AGG + tig0043324:9630-9649 Msa1463500:intergenic 20.0%
!! TTATATGAATTCATAAATGG+TGG - tig0043324:9629-9648 Msa1463500:intron 20.0%
!!! TTTCTTTTTGACTAGATAAA+TGG - tig0043324:9657-9676 Msa1463500:intron 20.0%
!! TGTTTTATGATCGAAATATC+AGG - tig0043324:7953-7972 Msa1463500:three_prime_UTR 25.0%
!!! GTACATACTGTTATTTCAAT+TGG + tig0043324:8212-8231 Msa1463500:intergenic 25.0%
! TATTCCATAGTGTTCTTTAA+AGG - tig0043324:8233-8252 Msa1463500:exon 25.0%
!! ATTTCCTTTAAAGAACACTA+TGG + tig0043324:8240-8259 Msa1463500:intergenic 25.0%
! TTTAACCTAAACACAAAACA+CGG + tig0043324:8675-8694 Msa1463500:intergenic 25.0%
!! ATTAATAAAGTACTCGGAAA+GGG + tig0043324:8895-8914 Msa1463500:intergenic 25.0%
!! AATTAATAAAGTACTCGGAA+AGG + tig0043324:8896-8915 Msa1463500:intergenic 25.0%
! TTTCCGAGTACTTTATTAAT+TGG - tig0043324:8895-8914 Msa1463500:intron 25.0%
! TTCCGAGTACTTTATTAATT+GGG - tig0043324:8896-8915 Msa1463500:intron 25.0%
! AAAACTTATTTCAATACCCT+TGG + tig0043324:8942-8961 Msa1463500:intergenic 25.0%
! AACATTTCACTATAACTGAA+TGG + tig0043324:8978-8997 Msa1463500:intergenic 25.0%
! TGTGTAAGATGCATAATTAA+AGG - tig0043324:9008-9027 Msa1463500:intron 25.0%
! TATATATAAAACTCTCAACC+AGG - tig0043324:9055-9074 Msa1463500:intron 25.0%
! ATATATAAAACTCTCAACCA+GGG - tig0043324:9056-9075 Msa1463500:intron 25.0%
! GCCTTATATGAATTCATAAA+TGG - tig0043324:9626-9645 Msa1463500:intron 25.0%
!! ATAAATGGTGGAACATATAA+GGG - tig0043324:9672-9691 Msa1463500:intron 25.0%
!!! TTAGTGATTTTTAGGAAGAA+AGG - tig0043324:9785-9804 Msa1463500:intron 25.0%
!!! TAGTGATTTTTAGGAAGAAA+GGG - tig0043324:9786-9805 Msa1463500:intron 25.0%
!! TGTTTTATGATCGAAATATC+AGG - tig0043324:7953-7972 Msa1463500:three_prime_UTR 25.0%
!!! GTACATACTGTTATTTCAAT+TGG + tig0043324:8212-8231 Msa1463500:intergenic 25.0%
! TATTCCATAGTGTTCTTTAA+AGG - tig0043324:8233-8252 Msa1463500:exon 25.0%
!! ATTTCCTTTAAAGAACACTA+TGG + tig0043324:8240-8259 Msa1463500:intergenic 25.0%
! TTTAACCTAAACACAAAACA+CGG + tig0043324:8675-8694 Msa1463500:intergenic 25.0%
!! ATTAATAAAGTACTCGGAAA+GGG + tig0043324:8895-8914 Msa1463500:intergenic 25.0%
!! AATTAATAAAGTACTCGGAA+AGG + tig0043324:8896-8915 Msa1463500:intergenic 25.0%
! TTTCCGAGTACTTTATTAAT+TGG - tig0043324:8895-8914 Msa1463500:intron 25.0%
! TTCCGAGTACTTTATTAATT+GGG - tig0043324:8896-8915 Msa1463500:intron 25.0%
! AAAACTTATTTCAATACCCT+TGG + tig0043324:8942-8961 Msa1463500:intergenic 25.0%
! AACATTTCACTATAACTGAA+TGG + tig0043324:8978-8997 Msa1463500:intergenic 25.0%
! TGTGTAAGATGCATAATTAA+AGG - tig0043324:9008-9027 Msa1463500:intron 25.0%
! TATATATAAAACTCTCAACC+AGG - tig0043324:9055-9074 Msa1463500:intron 25.0%
! ATATATAAAACTCTCAACCA+GGG - tig0043324:9056-9075 Msa1463500:intron 25.0%
! GCCTTATATGAATTCATAAA+TGG - tig0043324:9626-9645 Msa1463500:intron 25.0%
!! ATAAATGGTGGAACATATAA+GGG - tig0043324:9672-9691 Msa1463500:intron 25.0%
!!! TTAGTGATTTTTAGGAAGAA+AGG - tig0043324:9785-9804 Msa1463500:intron 25.0%
!!! TAGTGATTTTTAGGAAGAAA+GGG - tig0043324:9786-9805 Msa1463500:intron 25.0%
TTTATGATCGAAATATCAGG+TGG - tig0043324:7956-7975 Msa1463500:three_prime_UTR 30.0%
! TTCTCTGTATTTGTAGCTTT+TGG - tig0043324:8077-8096 Msa1463500:three_prime_UTR 30.0%
! CTGCTTCAGATTTTTATGTA+CGG - tig0043324:8275-8294 Msa1463500:CDS 30.0%
! ATGTACGGAATTTGAAACAA+TGG - tig0043324:8290-8309 Msa1463500:CDS 30.0%
! TGTACGGAATTTGAAACAAT+GGG - tig0043324:8291-8310 Msa1463500:CDS 30.0%
! GAAGTATTCTGTATGATCTT+AGG - tig0043324:8355-8374 Msa1463500:CDS 30.0%
TCTGTATGATCTTAGGATAA+TGG - tig0043324:8362-8381 Msa1463500:CDS 30.0%
CATTTCTACAAATAAGCTTG+AGG - tig0043324:8494-8513 Msa1463500:intron 30.0%
GTAATTGAGATTGACATTCT+AGG + tig0043324:8532-8551 Msa1463500:intergenic 30.0%
! AATGATATTTTGTCCTGTTC+CGG - tig0043324:8604-8623 Msa1463500:intron 30.0%
! TTGTGTTTAGGTTAAATGAG+TGG - tig0043324:8679-8698 Msa1463500:CDS 30.0%
!!! TTTTTTGAACAAAGTGGCTT+AGG - tig0043324:8717-8736 Msa1463500:intron 30.0%
CATATATTACACCATTCATG+TGG + tig0043324:9469-9488 Msa1463500:intergenic 30.0%
CTGGGAAAAATTCAAATGAT+GGG - tig0043324:9531-9550 Msa1463500:intron 30.0%
TGGGAAAAATTCAAATGATG+GGG - tig0043324:9532-9551 Msa1463500:intron 30.0%
!! CTTTTTGACTAGATAAATGG+TGG - tig0043324:9660-9679 Msa1463500:intron 30.0%
! GATAAATGGTGGAACATATA+AGG - tig0043324:9671-9690 Msa1463500:intron 30.0%
! TAAATGGTGGAACATATAAG+GGG - tig0043324:9673-9692 Msa1463500:intron 30.0%
TCTTCCTAAAAATCACTAAC+CGG + tig0043324:9784-9803 Msa1463500:intergenic 30.0%
TTTATGATCGAAATATCAGG+TGG - tig0043324:7956-7975 Msa1463500:three_prime_UTR 30.0%
! TTCTCTGTATTTGTAGCTTT+TGG - tig0043324:8077-8096 Msa1463500:three_prime_UTR 30.0%
! CTGCTTCAGATTTTTATGTA+CGG - tig0043324:8275-8294 Msa1463500:CDS 30.0%
! ATGTACGGAATTTGAAACAA+TGG - tig0043324:8290-8309 Msa1463500:CDS 30.0%
! TGTACGGAATTTGAAACAAT+GGG - tig0043324:8291-8310 Msa1463500:CDS 30.0%
! GAAGTATTCTGTATGATCTT+AGG - tig0043324:8355-8374 Msa1463500:CDS 30.0%
TCTGTATGATCTTAGGATAA+TGG - tig0043324:8362-8381 Msa1463500:CDS 30.0%
CATTTCTACAAATAAGCTTG+AGG - tig0043324:8494-8513 Msa1463500:intron 30.0%
GTAATTGAGATTGACATTCT+AGG + tig0043324:8532-8551 Msa1463500:intergenic 30.0%
! AATGATATTTTGTCCTGTTC+CGG - tig0043324:8604-8623 Msa1463500:intron 30.0%
! TTGTGTTTAGGTTAAATGAG+TGG - tig0043324:8679-8698 Msa1463500:CDS 30.0%
!!! TTTTTTGAACAAAGTGGCTT+AGG - tig0043324:8717-8736 Msa1463500:intron 30.0%
CATATATTACACCATTCATG+TGG + tig0043324:9469-9488 Msa1463500:intergenic 30.0%
CTGGGAAAAATTCAAATGAT+GGG - tig0043324:9531-9550 Msa1463500:intron 30.0%
TGGGAAAAATTCAAATGATG+GGG - tig0043324:9532-9551 Msa1463500:intron 30.0%
!! CTTTTTGACTAGATAAATGG+TGG - tig0043324:9660-9679 Msa1463500:intron 30.0%
! GATAAATGGTGGAACATATA+AGG - tig0043324:9671-9690 Msa1463500:intron 30.0%
! TAAATGGTGGAACATATAAG+GGG - tig0043324:9673-9692 Msa1463500:intron 30.0%
TCTTCCTAAAAATCACTAAC+CGG + tig0043324:9784-9803 Msa1463500:intergenic 30.0%
GAATTACCTCATCTCCAAAA+GGG + tig0043324:8051-8070 Msa1463500:intergenic 35.0%
TGAATTACCTCATCTCCAAA+AGG + tig0043324:8052-8071 Msa1463500:intergenic 35.0%
TTATTGACGATAGTTATCCG+TGG - tig0043324:8453-8472 Msa1463500:CDS 35.0%
CTGATGAAGATGTTATTCCA+CGG + tig0043324:8473-8492 Msa1463500:intergenic 35.0%
! ATGATATTTTGTCCTGTTCC+GGG - tig0043324:8605-8624 Msa1463500:intron 35.0%
TTAGGTTAAATGAGTGGCTT+AGG - tig0043324:8685-8704 Msa1463500:CDS 35.0%
GGGAAAAGGAATAGCATAAA+AGG + tig0043324:8763-8782 Msa1463500:intergenic 35.0%
ATCTTAGCTAAATGGGGAAA+AGG + tig0043324:8777-8796 Msa1463500:intergenic 35.0%
AGCGGAAATCTTAGCTAAAT+GGG + tig0043324:8784-8803 Msa1463500:intergenic 35.0%
! GGCCCAATTAATAAAGTACT+CGG + tig0043324:8901-8920 Msa1463500:intergenic 35.0%
TTTCACTATAACTGAATGGC+TGG + tig0043324:8974-8993 Msa1463500:intergenic 35.0%
TAGATATTTATGCATCTCCC+TGG + tig0043324:9076-9095 Msa1463500:intergenic 35.0%
AAAACTGAAGAGCCAAATCT+TGG - tig0043324:9146-9165 Msa1463500:intron 35.0%
CTGCAACTAATACCAAGATT+TGG + tig0043324:9161-9180 Msa1463500:intergenic 35.0%
GTATCTCGTTCATGTATAAG+AGG + tig0043324:9256-9275 Msa1463500:intergenic 35.0%
AGGCTGTGAATAACTGTAAA+AGG - tig0043324:9420-9439 Msa1463500:CDS 35.0%
GGCTGTGAATAACTGTAAAA+GGG - tig0043324:9421-9440 Msa1463500:CDS 35.0%
TGTGAATAACTGTAAAAGGG+TGG - tig0043324:9424-9443 Msa1463500:CDS 35.0%
AATAACTGTAAAAGGGTGGT+AGG - tig0043324:9428-9447 Msa1463500:CDS 35.0%
! CATTTGAATTTTTCCCAGCA+AGG + tig0043324:9529-9548 Msa1463500:intergenic 35.0%
GCTGGGAAAAATTCAAATGA+TGG - tig0043324:9530-9549 Msa1463500:intron 35.0%
CATCATTACTCACAAAAAGC+CGG - tig0043324:9762-9781 Msa1463500:intron 35.0%
! AAAGCCGGTTAGTGATTTTT+AGG - tig0043324:9777-9796 Msa1463500:intron 35.0%
! GATGTATTCTTGTTAGCTCT+AGG - tig0043324:9819-9838 Msa1463500:intron 35.0%
!! TATTCTTGTTAGCTCTAGGA+AGG - tig0043324:9823-9842 Msa1463500:intron 35.0%
GAATTACCTCATCTCCAAAA+GGG + tig0043324:8051-8070 Msa1463500:intergenic 35.0%
TGAATTACCTCATCTCCAAA+AGG + tig0043324:8052-8071 Msa1463500:intergenic 35.0%
TTATTGACGATAGTTATCCG+TGG - tig0043324:8453-8472 Msa1463500:CDS 35.0%
CTGATGAAGATGTTATTCCA+CGG + tig0043324:8473-8492 Msa1463500:intergenic 35.0%
! ATGATATTTTGTCCTGTTCC+GGG - tig0043324:8605-8624 Msa1463500:intron 35.0%
TTAGGTTAAATGAGTGGCTT+AGG - tig0043324:8685-8704 Msa1463500:CDS 35.0%
GGGAAAAGGAATAGCATAAA+AGG + tig0043324:8763-8782 Msa1463500:intergenic 35.0%
ATCTTAGCTAAATGGGGAAA+AGG + tig0043324:8777-8796 Msa1463500:intergenic 35.0%
AGCGGAAATCTTAGCTAAAT+GGG + tig0043324:8784-8803 Msa1463500:intergenic 35.0%
! GGCCCAATTAATAAAGTACT+CGG + tig0043324:8901-8920 Msa1463500:intergenic 35.0%
TTTCACTATAACTGAATGGC+TGG + tig0043324:8974-8993 Msa1463500:intergenic 35.0%
TAGATATTTATGCATCTCCC+TGG + tig0043324:9076-9095 Msa1463500:intergenic 35.0%
AAAACTGAAGAGCCAAATCT+TGG - tig0043324:9146-9165 Msa1463500:intron 35.0%
CTGCAACTAATACCAAGATT+TGG + tig0043324:9161-9180 Msa1463500:intergenic 35.0%
GTATCTCGTTCATGTATAAG+AGG + tig0043324:9256-9275 Msa1463500:intergenic 35.0%
AGGCTGTGAATAACTGTAAA+AGG - tig0043324:9420-9439 Msa1463500:CDS 35.0%
GGCTGTGAATAACTGTAAAA+GGG - tig0043324:9421-9440 Msa1463500:CDS 35.0%
TGTGAATAACTGTAAAAGGG+TGG - tig0043324:9424-9443 Msa1463500:CDS 35.0%
AATAACTGTAAAAGGGTGGT+AGG - tig0043324:9428-9447 Msa1463500:CDS 35.0%
! CATTTGAATTTTTCCCAGCA+AGG + tig0043324:9529-9548 Msa1463500:intergenic 35.0%
GCTGGGAAAAATTCAAATGA+TGG - tig0043324:9530-9549 Msa1463500:intron 35.0%
CATCATTACTCACAAAAAGC+CGG - tig0043324:9762-9781 Msa1463500:intron 35.0%
! AAAGCCGGTTAGTGATTTTT+AGG - tig0043324:9777-9796 Msa1463500:intron 35.0%
! GATGTATTCTTGTTAGCTCT+AGG - tig0043324:9819-9838 Msa1463500:intron 35.0%
!! TATTCTTGTTAGCTCTAGGA+AGG - tig0043324:9823-9842 Msa1463500:intron 35.0%
! TTTGGCATTGAGATTACTCC+TGG - tig0043324:7988-8007 Msa1463500:three_prime_UTR 40.0%
TCTTTGATGAAAAAGCAGCC+AGG + tig0043324:8009-8028 Msa1463500:intergenic 40.0%
! TCAAATATTGACCGCCCTTT+TGG - tig0043324:8034-8053 Msa1463500:three_prime_UTR 40.0%
!!! CACAACTAGTTTTGGGAGAT+AGG - tig0043324:8186-8205 Msa1463500:three_prime_UTR 40.0%
! TTTTGTAGCTTCAGAGAGCA+TGG - tig0043324:8400-8419 Msa1463500:CDS 40.0%
GGGATCAAGCATATAAAAGC+AGG + tig0043324:8577-8596 Msa1463500:intergenic 40.0%
! AAGGTCCGTGTTTTGTGTTT+AGG - tig0043324:8667-8686 Msa1463500:CDS 40.0%
GCGGAAATCTTAGCTAAATG+GGG + tig0043324:8783-8802 Msa1463500:intergenic 40.0%
GAGCGGAAATCTTAGCTAAA+TGG + tig0043324:8785-8804 Msa1463500:intergenic 40.0%
ACGAAAACCGTAGCTTAGTA+GGG + tig0043324:8816-8835 Msa1463500:intergenic 40.0%
AACGAAAACCGTAGCTTAGT+AGG + tig0043324:8817-8836 Msa1463500:intergenic 40.0%
! TACTAAGCTACGGTTTTCGT+TGG - tig0043324:8816-8835 Msa1463500:intron 40.0%
! ACTAAGCTACGGTTTTCGTT+GGG - tig0043324:8817-8836 Msa1463500:intron 40.0%
TGGTCTGCGAACTGTTTAAT+CGG + tig0043324:8922-8941 Msa1463500:intergenic 40.0%
ATTAAACAGTTCGCAGACCA+AGG - tig0043324:8922-8941 Msa1463500:intron 40.0%
TTAAACAGTTCGCAGACCAA+GGG - tig0043324:8923-8942 Msa1463500:intron 40.0%
CAGAAAGCAAGTTCAGATGA+TGG - tig0043324:9178-9197 Msa1463500:intron 40.0%
ATGTATAAGAGGCGGCAATA+GGG + tig0043324:9245-9264 Msa1463500:intergenic 40.0%
TCTCGTTCATGTATAAGAGG+CGG + tig0043324:9253-9272 Msa1463500:intergenic 40.0%
!!! CGATGCAATTTTTGAGTGAG+AGG + tig0043324:9293-9312 Msa1463500:intergenic 40.0%
TTGTTCTGCAGTATCTTGCA+TGG - tig0043324:9381-9400 Msa1463500:intron 40.0%
ATTGGAAAAGGCCACATGAA+TGG - tig0043324:9455-9474 Msa1463500:CDS 40.0%
TATGCACTGTTAGCTGATAC+AGG - tig0043324:9485-9504 Msa1463500:intron 40.0%
ATGCACTGTTAGCTGATACA+GGG - tig0043324:9486-9505 Msa1463500:intron 40.0%
! TCAAATGATGGGGCTTCTAA+TGG - tig0043324:9542-9561 Msa1463500:intron 40.0%
ACCTAGTCAAGAGTTTAGTG+AGG - tig0043324:9576-9595 Msa1463500:intron 40.0%
CCTAGTCAAGAGTTTAGTGA+GGG - tig0043324:9577-9596 Msa1463500:intron 40.0%
GGTGATTGGCATTGTCTTAT+GGG - tig0043324:9604-9623 Msa1463500:intron 40.0%
! GTATCACTTTCACTGACTAG+AGG + tig0043324:9922-9941 Msa1463500:intergenic 40.0%
CTAGTCAGTGAAAGTGATAC+AGG - tig0043324:9922-9941 Msa1463500:CDS 40.0%
GGCTGGAGTTTACTAAAGAA+AGG + tig0043324:9950-9969 Msa1463500:intergenic 40.0%
! TTTGGCATTGAGATTACTCC+TGG - tig0043324:7988-8007 Msa1463500:three_prime_UTR 40.0%
TCTTTGATGAAAAAGCAGCC+AGG + tig0043324:8009-8028 Msa1463500:intergenic 40.0%
! TCAAATATTGACCGCCCTTT+TGG - tig0043324:8034-8053 Msa1463500:three_prime_UTR 40.0%
!!! CACAACTAGTTTTGGGAGAT+AGG - tig0043324:8186-8205 Msa1463500:three_prime_UTR 40.0%
! TTTTGTAGCTTCAGAGAGCA+TGG - tig0043324:8400-8419 Msa1463500:CDS 40.0%
GGGATCAAGCATATAAAAGC+AGG + tig0043324:8577-8596 Msa1463500:intergenic 40.0%
! AAGGTCCGTGTTTTGTGTTT+AGG - tig0043324:8667-8686 Msa1463500:CDS 40.0%
GCGGAAATCTTAGCTAAATG+GGG + tig0043324:8783-8802 Msa1463500:intergenic 40.0%
GAGCGGAAATCTTAGCTAAA+TGG + tig0043324:8785-8804 Msa1463500:intergenic 40.0%
ACGAAAACCGTAGCTTAGTA+GGG + tig0043324:8816-8835 Msa1463500:intergenic 40.0%
AACGAAAACCGTAGCTTAGT+AGG + tig0043324:8817-8836 Msa1463500:intergenic 40.0%
! TACTAAGCTACGGTTTTCGT+TGG - tig0043324:8816-8835 Msa1463500:intron 40.0%
! ACTAAGCTACGGTTTTCGTT+GGG - tig0043324:8817-8836 Msa1463500:intron 40.0%
TGGTCTGCGAACTGTTTAAT+CGG + tig0043324:8922-8941 Msa1463500:intergenic 40.0%
ATTAAACAGTTCGCAGACCA+AGG - tig0043324:8922-8941 Msa1463500:intron 40.0%
TTAAACAGTTCGCAGACCAA+GGG - tig0043324:8923-8942 Msa1463500:intron 40.0%
CAGAAAGCAAGTTCAGATGA+TGG - tig0043324:9178-9197 Msa1463500:intron 40.0%
ATGTATAAGAGGCGGCAATA+GGG + tig0043324:9245-9264 Msa1463500:intergenic 40.0%
TCTCGTTCATGTATAAGAGG+CGG + tig0043324:9253-9272 Msa1463500:intergenic 40.0%
!!! CGATGCAATTTTTGAGTGAG+AGG + tig0043324:9293-9312 Msa1463500:intergenic 40.0%
TTGTTCTGCAGTATCTTGCA+TGG - tig0043324:9381-9400 Msa1463500:intron 40.0%
ATTGGAAAAGGCCACATGAA+TGG - tig0043324:9455-9474 Msa1463500:CDS 40.0%
TATGCACTGTTAGCTGATAC+AGG - tig0043324:9485-9504 Msa1463500:intron 40.0%
ATGCACTGTTAGCTGATACA+GGG - tig0043324:9486-9505 Msa1463500:intron 40.0%
! TCAAATGATGGGGCTTCTAA+TGG - tig0043324:9542-9561 Msa1463500:intron 40.0%
ACCTAGTCAAGAGTTTAGTG+AGG - tig0043324:9576-9595 Msa1463500:intron 40.0%
CCTAGTCAAGAGTTTAGTGA+GGG - tig0043324:9577-9596 Msa1463500:intron 40.0%
GGTGATTGGCATTGTCTTAT+GGG - tig0043324:9604-9623 Msa1463500:intron 40.0%
! GTATCACTTTCACTGACTAG+AGG + tig0043324:9922-9941 Msa1463500:intergenic 40.0%
CTAGTCAGTGAAAGTGATAC+AGG - tig0043324:9922-9941 Msa1463500:CDS 40.0%
GGCTGGAGTTTACTAAAGAA+AGG + tig0043324:9950-9969 Msa1463500:intergenic 40.0%
ATCAGGTGGTCAAACTGCTT+TGG - tig0043324:7970-7989 Msa1463500:three_prime_UTR 45.0%
TTACCTCATCTCCAAAAGGG+CGG + tig0043324:8048-8067 Msa1463500:intergenic 45.0%
!! CGAAAAGTGTCAGAGGAAGT+TGG - tig0043324:8161-8180 Msa1463500:three_prime_UTR 45.0%
!! AGTTGGCGCACAACTAGTTT+TGG - tig0043324:8178-8197 Msa1463500:three_prime_UTR 45.0%
!!! GTTGGCGCACAACTAGTTTT+GGG - tig0043324:8179-8198 Msa1463500:three_prime_UTR 45.0%
!! GAGCATGGAAGGCTTTGAAT+TGG - tig0043324:8415-8434 Msa1463500:CDS 45.0%
! AGAGCGTCTAGGATATCTAC+CGG - tig0043324:8629-8648 Msa1463500:CDS 45.0%
CAAAACACGGACCTTGAACA+TGG + tig0043324:8662-8681 Msa1463500:intergenic 45.0%
TAGCTAAGATTTCCGCTCTC+TGG - tig0043324:8787-8806 Msa1463500:intron 45.0%
AGCTAAGATTTCCGCTCTCT+GGG - tig0043324:8788-8807 Msa1463500:intron 45.0%
AGTAGAATCCGAATAGGCAC+AGG + tig0043324:8854-8873 Msa1463500:intergenic 45.0%
GTGCCTATTCGGATTCTACT+CGG - tig0043324:8854-8873 Msa1463500:intron 45.0%
CATGTATAAGAGGCGGCAAT+AGG + tig0043324:9246-9265 Msa1463500:intergenic 45.0%
TAGGACTTGTCACACGCAAA+AGG + tig0043324:9322-9341 Msa1463500:intergenic 45.0%
! ATCTTGCATGGTCTCTGAAG+CGG - tig0043324:9393-9412 Msa1463500:CDS 45.0%
AAAAGGGTGGTAGGTGTGAT+TGG - tig0043324:9437-9456 Msa1463500:CDS 45.0%
GTGGTAGGTGTGATTGGAAA+AGG - tig0043324:9443-9462 Msa1463500:CDS 45.0%
TTGAGATTTCGAGACCTTGC+TGG - tig0043324:9512-9531 Msa1463500:intron 45.0%
TGAGATTTCGAGACCTTGCT+GGG - tig0043324:9513-9532 Msa1463500:intron 45.0%
CCCTCACTAAACTCTTGACT+AGG + tig0043324:9580-9599 Msa1463500:intergenic 45.0%
CAAGAGTTTAGTGAGGGACA+CGG - tig0043324:9583-9602 Msa1463500:intron 45.0%
CGGTGATTGGCATTGTCTTA+TGG - tig0043324:9603-9622 Msa1463500:intron 45.0%
ATCAGGTGGTCAAACTGCTT+TGG - tig0043324:7970-7989 Msa1463500:three_prime_UTR 45.0%
TTACCTCATCTCCAAAAGGG+CGG + tig0043324:8048-8067 Msa1463500:intergenic 45.0%
!! CGAAAAGTGTCAGAGGAAGT+TGG - tig0043324:8161-8180 Msa1463500:three_prime_UTR 45.0%
!! AGTTGGCGCACAACTAGTTT+TGG - tig0043324:8178-8197 Msa1463500:three_prime_UTR 45.0%
!!! GTTGGCGCACAACTAGTTTT+GGG - tig0043324:8179-8198 Msa1463500:three_prime_UTR 45.0%
!! GAGCATGGAAGGCTTTGAAT+TGG - tig0043324:8415-8434 Msa1463500:CDS 45.0%
! AGAGCGTCTAGGATATCTAC+CGG - tig0043324:8629-8648 Msa1463500:CDS 45.0%
CAAAACACGGACCTTGAACA+TGG + tig0043324:8662-8681 Msa1463500:intergenic 45.0%
TAGCTAAGATTTCCGCTCTC+TGG - tig0043324:8787-8806 Msa1463500:intron 45.0%
AGCTAAGATTTCCGCTCTCT+GGG - tig0043324:8788-8807 Msa1463500:intron 45.0%
AGTAGAATCCGAATAGGCAC+AGG + tig0043324:8854-8873 Msa1463500:intergenic 45.0%
GTGCCTATTCGGATTCTACT+CGG - tig0043324:8854-8873 Msa1463500:intron 45.0%
CATGTATAAGAGGCGGCAAT+AGG + tig0043324:9246-9265 Msa1463500:intergenic 45.0%
TAGGACTTGTCACACGCAAA+AGG + tig0043324:9322-9341 Msa1463500:intergenic 45.0%
! ATCTTGCATGGTCTCTGAAG+CGG - tig0043324:9393-9412 Msa1463500:CDS 45.0%
AAAAGGGTGGTAGGTGTGAT+TGG - tig0043324:9437-9456 Msa1463500:CDS 45.0%
GTGGTAGGTGTGATTGGAAA+AGG - tig0043324:9443-9462 Msa1463500:CDS 45.0%
TTGAGATTTCGAGACCTTGC+TGG - tig0043324:9512-9531 Msa1463500:intron 45.0%
TGAGATTTCGAGACCTTGCT+GGG - tig0043324:9513-9532 Msa1463500:intron 45.0%
CCCTCACTAAACTCTTGACT+AGG + tig0043324:9580-9599 Msa1463500:intergenic 45.0%
CAAGAGTTTAGTGAGGGACA+CGG - tig0043324:9583-9602 Msa1463500:intron 45.0%
CGGTGATTGGCATTGTCTTA+TGG - tig0043324:9603-9622 Msa1463500:intron 45.0%
! GTAGCTTCAGAGAGCATGGA+AGG - tig0043324:8404-8423 Msa1463500:CDS 50.0%
GATATCCTAGACGCTCTACC+CGG + tig0043324:8626-8645 Msa1463500:intergenic 50.0%
! CGGTTTTCGTTGGGAATCCT+TGG - tig0043324:8826-8845 Msa1463500:intron 50.0%
CCTTGGAACCTGTGCCTATT+CGG - tig0043324:8843-8862 Msa1463500:intron 50.0%
GAGCCGAGTAGAATCCGAAT+AGG + tig0043324:8860-8879 Msa1463500:intergenic 50.0%
ATAAGAGGCGGCAATAGGGA+TGG + tig0043324:9241-9260 Msa1463500:intergenic 50.0%
TGCGTGTGACAAGTCCTACA+AGG - tig0043324:9324-9343 Msa1463500:intron 50.0%
!! CTTGGGAGTTGTAGCCTTGT+AGG + tig0043324:9341-9360 Msa1463500:intergenic 50.0%
! ATGATGGGGCTTCTAATGGC+TGG - tig0043324:9546-9565 Msa1463500:intron 50.0%
TTAGTGAGGGACACGGTGAT+TGG - tig0043324:9590-9609 Msa1463500:intron 50.0%
! GTAGCTTCAGAGAGCATGGA+AGG - tig0043324:8404-8423 Msa1463500:CDS 50.0%
GATATCCTAGACGCTCTACC+CGG + tig0043324:8626-8645 Msa1463500:intergenic 50.0%
! CGGTTTTCGTTGGGAATCCT+TGG - tig0043324:8826-8845 Msa1463500:intron 50.0%
CCTTGGAACCTGTGCCTATT+CGG - tig0043324:8843-8862 Msa1463500:intron 50.0%
GAGCCGAGTAGAATCCGAAT+AGG + tig0043324:8860-8879 Msa1463500:intergenic 50.0%
ATAAGAGGCGGCAATAGGGA+TGG + tig0043324:9241-9260 Msa1463500:intergenic 50.0%
TGCGTGTGACAAGTCCTACA+AGG - tig0043324:9324-9343 Msa1463500:intron 50.0%
!! CTTGGGAGTTGTAGCCTTGT+AGG + tig0043324:9341-9360 Msa1463500:intergenic 50.0%
! ATGATGGGGCTTCTAATGGC+TGG - tig0043324:9546-9565 Msa1463500:intron 50.0%
TTAGTGAGGGACACGGTGAT+TGG - tig0043324:9590-9609 Msa1463500:intron 50.0%
!! TGACCGCCCTTTTGGAGATG+AGG - tig0043324:8042-8061 Msa1463500:three_prime_UTR 55.0%
!! CTGACACTTTTCGAGCAGCG+CGG + tig0043324:8154-8173 Msa1463500:intergenic 55.0%
!! CGCTGCTCGAAAAGTGTCAG+AGG - tig0043324:8154-8173 Msa1463500:three_prime_UTR 55.0%
CCTTGAACATGGCACACTGC+CGG + tig0043324:8651-8670 Msa1463500:intergenic 55.0%
! TTAGTAGGGTGCCCAGAGAG+CGG + tig0043324:8802-8821 Msa1463500:intergenic 55.0%
CTGGGCACCCTACTAAGCTA+CGG - tig0043324:8806-8825 Msa1463500:intron 55.0%
CCGAATAGGCACAGGTTCCA+AGG + tig0043324:8846-8865 Msa1463500:intergenic 55.0%
!! ATGGTCTCTGAAGCGGAGCA+AGG - tig0043324:9400-9419 Msa1463500:CDS 55.0%
!! TGACCGCCCTTTTGGAGATG+AGG - tig0043324:8042-8061 Msa1463500:three_prime_UTR 55.0%
!! CTGACACTTTTCGAGCAGCG+CGG + tig0043324:8154-8173 Msa1463500:intergenic 55.0%
!! CGCTGCTCGAAAAGTGTCAG+AGG - tig0043324:8154-8173 Msa1463500:three_prime_UTR 55.0%
CCTTGAACATGGCACACTGC+CGG + tig0043324:8651-8670 Msa1463500:intergenic 55.0%
! TTAGTAGGGTGCCCAGAGAG+CGG + tig0043324:8802-8821 Msa1463500:intergenic 55.0%
CTGGGCACCCTACTAAGCTA+CGG - tig0043324:8806-8825 Msa1463500:intron 55.0%
CCGAATAGGCACAGGTTCCA+AGG + tig0043324:8846-8865 Msa1463500:intergenic 55.0%
!! ATGGTCTCTGAAGCGGAGCA+AGG - tig0043324:9400-9419 Msa1463500:CDS 55.0%
CTAGACGCTCTACCCGGAAC+AGG + tig0043324:8620-8639 Msa1463500:intergenic 60.0%
! CTGTTCCGGGTAGAGCGTCT+AGG - tig0043324:8618-8637 Msa1463500:intron 60.0%
CCGGCAGTGTGCCATGTTCA+AGG - tig0043324:8648-8667 Msa1463500:CDS 60.0%
CTAGACGCTCTACCCGGAAC+AGG + tig0043324:8620-8639 Msa1463500:intergenic 60.0%
! CTGTTCCGGGTAGAGCGTCT+AGG - tig0043324:8618-8637 Msa1463500:intron 60.0%
CCGGCAGTGTGCCATGTTCA+AGG - tig0043324:8648-8667 Msa1463500:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0043324 gene 7917 9984 7917 ID=Msa1463500;Name=Msa1463500
tig0043324 mRNA 7917 9984 7917 ID=Msa1463500-mRNA-1;Parent=Msa1463500;Name=Msa1463500-mRNA-1;_AED=0.24;_eAED=0.24;_QI=42|0.75|0.8|1|1|1|5|317|219
tig0043324 exon 7917 8509 7917 ID=Msa1463500-mRNA-1:exon:24090;Parent=Msa1463500-mRNA-1
tig0043324 exon 8625 8720 8625 ID=Msa1463500-mRNA-1:exon:24089;Parent=Msa1463500-mRNA-1
tig0043324 exon 9386 9493 9386 ID=Msa1463500-mRNA-1:exon:24088;Parent=Msa1463500-mRNA-1
tig0043324 exon 9678 9752 9678 ID=Msa1463500-mRNA-1:exon:24087;Parent=Msa1463500-mRNA-1
tig0043324 exon 9838 9984 9838 ID=Msa1463500-mRNA-1:exon:24086;Parent=Msa1463500-mRNA-1
tig0043324 five_prime_UTR 9943 9984 9943 ID=Msa1463500-mRNA-1:five_prime_utr;Parent=Msa1463500-mRNA-1
tig0043324 CDS 9838 9942 9838 ID=Msa1463500-mRNA-1:cds;Parent=Msa1463500-mRNA-1
tig0043324 CDS 9678 9752 9678 ID=Msa1463500-mRNA-1:cds;Parent=Msa1463500-mRNA-1
tig0043324 CDS 9386 9493 9386 ID=Msa1463500-mRNA-1:cds;Parent=Msa1463500-mRNA-1
tig0043324 CDS 8625 8720 8625 ID=Msa1463500-mRNA-1:cds;Parent=Msa1463500-mRNA-1
tig0043324 CDS 8234 8509 8234 ID=Msa1463500-mRNA-1:cds;Parent=Msa1463500-mRNA-1
tig0043324 three_prime_UTR 7917 8233 7917 ID=Msa1463500-mRNA-1:three_prime_utr;Parent=Msa1463500-mRNA-1
Gene Sequence

>Msa1463500

ATGATCGAAATATCAGGTGGTCAAACTGCTTTGGCATTGAGATTACTCCTGGCTGCTTTTTCATCAAAGATATCTTCAAATATTGACCGCCCTTTTGGAGATGAGTTCCGCGCTGCTCGAAAAGTGTCAGAGGAAGTTGGCGCACAACTAGTTTTGGGAGATAGGCCAATTGAAATAACACTTCAGAGAGCATGGAAGGCTTTGAATTGGACTCAGAAGTTGAGTTTATTGACGATAGTTATCCGTGGAATAACATCTTCATCAGACATTTCTACAAATAAGCTTGAGAAAGCAAGTTCAGATGATGGTACACTTCAGCTTTATGAGCAGCTCAGTTTTTCATATCCATCCCTATTGCCGCCTCTTATACATGAACGAGATACTTATCTTGCATGGTCTCTGAAGCGGAGCAAGGCTGTGAATAACTGTAAAAGGGTGGTAGGTGTGATTGGAAAAGGCCACATGAATGGTGTAATATATGCACTGTTAGCTGATACAGGGAATTTGAGATTTCGAGACCTTGCTGGGAAAAATTCAAATGATGGGGCTTCTAATGGCTGGATCGATGACCTAGTCAAGAGTTTAGTGAGGGACACGGTGATTGGCATTGTCTTATGGGCCTTATATGAATTCATAAATGGTGGAACATTTTCTTTTTGA

Protein sequence

>Msa1463500

MIEISGGQTALALRLLLAAFSSKISSNIDRPFGDEFRAARKVSEEVGAQLVLGDRPIEITLQRAWKALNWTQKLSLLTIVIRGITSSSDISTNKLEKASSDDGTLQLYEQLSFSYPSLLPPLIHERDTYLAWSLKRSKAVNNCKRVVGVIGKGHMNGVIYALLADTGNLRFRDLAGKNSNDGASNGWIDDLVKSLVRDTVIGIVLWALYEFINGGTFSF*