AlfalfaGEDB | MS.gene88882

M. sativa cultivar XinJiangDaYe / MS.gene88882

KEGG: K09874
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0015267 GO:0016020 GO:0022803 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00230.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88882.t1	XP_003592016.1	98.3	300	5	0	1	300	1	300	1.70E-137	498.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88882.t1	Q9SV84	65.1	281	88	3	25	300	29	304	9.5e-84	311.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88882.t1	G7IAK3	98.3	300	5	0	1	300	1	300	1.3e-137	498.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene88882	-0.839277	1.74E-57	-1.69E-46
MS.gene049217	MS.gene88882	-0.815401	9.42E-52	-1.69E-46
MS.gene049222	MS.gene88882	-0.81606	6.72E-52	-1.69E-46
MS.gene049265	MS.gene88882	0.808752	2.65E-50	-1.69E-46
MS.gene049281	MS.gene88882	0.815312	9.86E-52	-1.69E-46
MS.gene049285	MS.gene88882	-0.809888	1.51E-50	-1.69E-46
MS.gene049320	MS.gene88882	-0.826136	3.20E-54	-1.69E-46
MS.gene049549	MS.gene88882	0.826351	2.85E-54	-1.69E-46
MS.gene049611	MS.gene88882	0.820413	6.95E-53	-1.69E-46
MS.gene049633	MS.gene88882	-0.808744	2.66E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene88882	MS.gene51627	PPI
MS.gene88882	MS.gene56256	PPI
MS.gene88882	MS.gene009458	PPI
MS.gene88882	MS.gene63514	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88882.t1	MTR_1g097840	98.333	300	5	0	1	300	1	300	0.0	596
MS.gene88882.t1	MTR_1g097840	98.729	236	3	0	1	236	1	236	3.88e-168	467
MS.gene88882.t1	MTR_4g006730	59.220	282	112	1	9	287	7	288	6.31e-114	331
MS.gene88882.t1	MTR_2g104940	57.877	292	105	3	13	290	11	298	1.38e-107	315
MS.gene88882.t1	MTR_4g006630	70.647	201	59	0	87	287	1	201	1.90e-98	288
MS.gene88882.t1	MTR_4g006730	70.149	201	60	0	87	287	1	201	1.01e-97	286
MS.gene88882.t1	MTR_4g006730	57.576	231	95	1	9	236	7	237	8.29e-85	256
MS.gene88882.t1	MTR_8g087710	48.193	249	114	4	52	297	21	257	1.01e-69	218
MS.gene88882.t1	MTR_8g087720	49.785	233	106	3	71	300	35	259	2.12e-69	216
MS.gene88882.t1	MTR_2g017570	45.421	273	126	5	35	300	3	259	4.78e-67	211

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88882.t1	AT4G10380	70.463	281	73	3	25	300	29	304	1.26e-141	401
MS.gene88882.t1	AT1G80760	57.667	300	118	4	9	300	7	305	5.94e-111	323
MS.gene88882.t1	AT4G19030	49.167	240	108	3	69	300	50	283	1.23e-68	216
MS.gene88882.t1	AT5G37820	43.173	271	138	4	35	300	11	270	1.38e-68	215
MS.gene88882.t1	AT5G37820	43.866	269	139	4	35	300	47	306	3.14e-68	215
MS.gene88882.t1	AT5G37810	42.066	271	141	4	35	300	11	270	2.62e-67	212
MS.gene88882.t1	AT4G18910	46.694	242	111	3	69	300	47	280	2.90e-65	207
MS.gene88882.t1	AT1G31885	50.224	223	103	2	69	283	38	260	1.36e-64	206
MS.gene88882.t1	AT1G31885	49.029	206	97	2	86	283	1	206	4.31e-57	185
MS.gene88882.t1	AT2G34390	43.777	233	117	4	69	291	43	271	3.02e-52	173

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Find 88 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCCAGAATCGGAGTC+AGG	0.425265	1.1:+70400017	None:intergenic
AAATGCCAGAATCGGAGTCA+GGG	0.577507	1.1:+70400018	None:intergenic
AACGTGAGTCATTTGCAATG+GGG	0.719998	1.1:+70400126	MS.gene88882:CDS
AAGCTCCTAACCGGTTGAGG+TGG	0.652704	1.1:-70404954	None:intergenic
AAGTGGTGGTTCCATGAATC+CGG	0.485536	1.1:+70404797	MS.gene88882:CDS
AAGTGTCTCTCTTTCTCAGA+AGG	0.536928	1.1:+70400223	MS.gene88882:CDS
AATGCTAGGCCAACAAGTGG+TGG	0.629751	1.1:+70404783	MS.gene88882:intron
AATGGAGTAGAAACTCTTAT+GGG	0.469616	1.1:+70403823	MS.gene88882:CDS
AATGGCCCTCCGGGAGTATC+CGG	0.425506	1.1:-70400071	None:intergenic
ACAGATTGGAGCAGAGTTTG+TGG	0.494648	1.1:+70403744	MS.gene88882:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATGCAACTAGTAACA+TGG	-	chr1.1:70401821-70401840	None:intergenic	30.0%
AATGGAGTAGAAACTCTTAT+GGG	+	chr1.1:70403823-70403842	MS.gene88882:CDS	30.0%
ACAAATGCAACTAGTAACAT+GGG	-	chr1.1:70401820-70401839	None:intergenic	30.0%
ACCAGTACACCTTAATTTAA+GGG	-	chr1.1:70400497-70400516	None:intergenic	30.0%
ATATGACAGCCAAAATTTCA+GGG	+	chr1.1:70402332-70402351	MS.gene88882:intron	30.0%
CATTTAATTCATGAGTGTAC+CGG	+	chr1.1:70400822-70400841	MS.gene88882:intron	30.0%
GGATTAGAATAATGTGACAA+TGG	-	chr1.1:70403666-70403685	None:intergenic	30.0%
GTCAGATTTAACTGTTTCAT+GGG	+	chr1.1:70400362-70400381	MS.gene88882:intron	30.0%
GTCATGTCATTAAAAACCTT+AGG	-	chr1.1:70404573-70404592	None:intergenic	30.0%
TAAATAGTATTGTTTGCACG+TGG	+	chr1.1:70401064-70401083	MS.gene88882:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	70400020	70404986	70400020	ID=MS.gene88882
chr1.1	mRNA	70400020	70404986	70400020	ID=MS.gene88882.t1;Parent=MS.gene88882
chr1.1	exon	70400020	70400244	70400020	ID=MS.gene88882.t1.exon1;Parent=MS.gene88882.t1
chr1.1	CDS	70400020	70400244	70400020	ID=cds.MS.gene88882.t1;Parent=MS.gene88882.t1
chr1.1	exon	70403748	70404167	70403748	ID=MS.gene88882.t1.exon2;Parent=MS.gene88882.t1
chr1.1	CDS	70403748	70404167	70403748	ID=cds.MS.gene88882.t1;Parent=MS.gene88882.t1
chr1.1	exon	70404375	70404436	70404375	ID=MS.gene88882.t1.exon3;Parent=MS.gene88882.t1
chr1.1	CDS	70404375	70404436	70404375	ID=cds.MS.gene88882.t1;Parent=MS.gene88882.t1
chr1.1	exon	70404791	70404986	70404791	ID=MS.gene88882.t1.exon4;Parent=MS.gene88882.t1
chr1.1	CDS	70404791	70404986	70404791	ID=cds.MS.gene88882.t1;Parent=MS.gene88882.t1

Gene Sequence

>MS.gene88882

ATGCCAGAATCGGAGTCAGGGACACCGACGGCAGCGTCGGTGCCGGCGACACCGGATACTCCCGGAGGGCCATTATTCTCATCTATAAGAATTGATTCACTTGATCAACGTGAGTCATTTGCAATGGGGAGGTGCAACATGTGTATGCCGGGTGATAAAAGCAATAGTTGCATCGCTAATTTCTCTGCTGGAGTTCGTATTCCAAGTGTCTCTCTTTCTCAGAAGGTAACATCTCTCTCTTTATGATTTTTGGTCAACGAGTTTTGGTGAATTATTTTTATGAATATTTTTTTCTCATACCACCGCCCACAAATTAATTCCATTTGGTTTCTAGCTTGCATGGTCAGATTTAACTGTTTCATGGGAGTTATTTATTATTTAGAAGACAAAATAACAGTAAACCTTGACTAAAATATCAAATAGATAGCATTTTTTTAGGGAATAGATAATGTTATAGGGAATTTCTACGGTACACCCTTAAATTAAGGTGTACTGGTACACCTATTTCATAAATCAATAAGTTACCGATCATTTTTATCTAATAAAGAGATATTTGTCGACTTTTATATTTTAGAAAATATTATTTCATAAGAAAAAACATCATTTCATTTTTTATAAGTATCATACTAATTTTTTAACATTTTATCGAAAAAATAATCAATATTCACTATTATTAGTATTAAAAATTAAAAAAAGTTGAATTTTGATTCGCCGACACTTTTGAGAAATAAAAATATAATTATTATAATTGTAACCGATAGAAACTATATTTTTTCTAAAAAAAATAACTCATTAAACTATTCATTTAATTCATGAGTGTACCGGTACACTTAATTTTTTTGAGTGTACCGTAGAAATTGCCAATGTTATATACTATTAGTACTATATGTATGTGACATAAATGTATTAGATATTAATTAATATTAGTTAATTTAATTAACAATTGGGCATTACCACTTGTTTTTGTATTTGTAATGTTTTTCACAATTTGTATCTTATGATGTGATGAGATGTGCATGATTGGGATATTAGCAAAATAATGCATAAATAGTATTGTTTGCACGTGGTATACGATATTCTTTGAAGTCTTCAATATTCTTATGTATACTCTTCGCTGTCATTTTTATAAGAAATACTAAGTATTATCTTTCTTTTAATTATAAAATATATAAACTTGTTATAAAGTCTATTTATATATACATTCCAGCAAATTCCTTCAAAAAAAAATATACATTCCAGCAAATAAAATTTATTTCCTAAAAAAGAAGCAAACAAAAAAATCATTTTCTATTGAAAAAGCCTTGAAAACAATTTTTTTATTAAATACAAACACCGTGTGTAATATAGTATATGTACATTCTTATCTTTCTCTTACTTTTTATGTTCTACAAACACATATTTCAAAACTATGCATAAAAACTAAAGAACATAAAAAAAAATAAAGAATGATTTCACATAATTCTATTTATATAATTGTATTAGTTAGTACTATTGTTGAAATGCATAAGAGTACATTATTATCTTTTTTATATTGAAATGAAATATATGGTTGCGAGCAGTTATCTTCAGTATTCACACATTTCAATATATAATTTTGTCGGCCTTCAAATGTATTTTGACATAGATGGGTTATTGGATAAAAACAATTTCATTGATAAACAAAAGATAGATTACGACTTCTGAGTACATAGACTTGAAACAGTGCAAAAACATGTAGGATATTAAGCTACACTGGTTATCTTGGCTTGATTGTAAAAAACGTACTATACATCTGTCGCTAGCAAGAGCTCTAATAAACCCATGTTACTAGTTGCATTTGTTGAAAGAAACTTTTCTAAAGTAAACTTGTGAAAATCTTATTTCCGAAAGTATATTGAATAGTTTTACTTTAAACGTGAACGAGTTGTTAAGGATTTTGCAAGAAATAGAATGCAAGAAATAGATTATTCAAATGAGATTTCTCTTTGTAAAATAAAAAAGATTAATGCGGACCATTTACTTAACTCGTACTCCCTCCGGTCACTATTATAAGCAAAAGTTCATTTTTTAGATTCATTCAATAAATGATGTATGTAGTCTAAATAGAATGCAAGAAATATATTATTCAAATGAGATTTCTCTTTGTAAAATAAAAAAGATTAATGCGGACCATTTACTTAACTCATACTCCTCCGGTCACTATTATAAGCAAAAATTGATTTTTTAGGTTCATTCAATAAATGATGTATGTAGTCCATATATAGACTACATACATCATTTATTGAATGAATCTAAAAAATGAACTTTTGCTTATAATAGTGACCGGAGGAAGTATATGACAGCCAAAATTTCAGGGACGGACATGTTTTCTCAATATCAAGGAGGTATATATTTTACTAAGGGTGTGTGGATGGAGAGTTTAAGAGAGGATGGGAGGGGAGAGTTTACATTTTGTTTTTAAATTACGAACACTATAAAATATTTTTTTTAAAATTAAAATAACAACATGATAAACGATCATATAATACTTCAATCACACTTAATTTATTATAGAAAAACATGTTATATAGTCCGTATTTTAAAAAAGAAAAGTAAATCATCCCCTTCCTTTTCCCTCCTAAACTCTCAATCCAAACACACCCTAAGAAAATATCAAACATGTTCGATGTTTTTGTTTTTTTTTTTAAAAAAGTTGATTAAATGAGGGGTAGGATGAGTGTAAAAGAATTGAGCCGAATACTTAAACTTTGAGTTTGACTTGTAAAAAAATGAATAATCTGAGCTTGACTCATTTATTTAATCGTGTCAATCTGAAAACTTGGGTTAGGATTTATTTTTTTTGAGAGGAACTTGGGTTCGACTTTTTTTTTTAAGGGAATGAACTTGGGTTTGACTTGTTTTTGCAATTATGCACATTTTGACTATGATAAAAAATAAAATTAAAAATTAAAAAAAAAAAGTTAGGTTAACAAGTGTCATAAGGGCATTGTTTAAGGAATTCATTATAAAAAGTTATAATTACACAAGTTGTTATATAAAAGTTACCACTTTTAGTTGTTTAAACAATGCTCTAAAAACATTTGTTAGCATTTCCTAAAAATAAATGTAAAATAAAAAGTTAAAAGACATTCATTCTTTTGCTACTAATATTTTGAAATTACATAGATTTTTTTTGGACTATATATATATATATATATATATATATATATATATGTTTGACTTGATTTATTAAAGTTTCTTAACTGCCATAAATACTTTGAGACTGTTTGAAAAAATTTATACAACAAAATATGACTTTGACCAAAAAAAACAAACAACTTATAACATATCTATGACGTATTTTCAACTTTTTTTTTTTCAAAAGTTCTCCAAACAAAGGTTAACCATGTAGTTGATTTAATTTTGTAAGCTTTGGGGTTAGAATGATGATGTGTGTACATAGGTTTATTGATGTGCTACTTTTCTACTTATAGCATTGCTTGAGTTATTAGTGGTGATTACTAAAAAAAAATAAAGAAAAAATGTATTTTTGAATACACATAGAATGTTCCAAATGTGGATTTTTCCAAAAATCTACATTTGGAACATTCCAATAAACTCCAAAGTAGCTCTTTCATTCTACTATATAAGCATCGAATTTTCAAAAACTCTTCTAAAATATTATCCATTGTCACATTATTCTAATCCCCCTTAATGAAAAAGGAAAAGTAAAATTAATATTGATTTTTCAATGTTAAAATGTGTCACAGATTGGAGCAGAGTTTGTGGGAACATTCATACTAATATATGCAGCAACAGCAGGACCAATAGTGAACAACAAATACAATGGAGTAGAAACTCTTATGGGAAATGCAGCTTGTGCTGGACTAACAGTCATGTTCATTATTCTATCAATTGGTCATATCTCAGGTGCACATCTCAATCCATCACTCACCATTGCCTTCGCGGCGTTTCGCCATTTCCCGTGGGCACATGTTCCAGCCTACATTGCAGCACAAGTCTCTGCTTCGATTTGCGCTTGTTATGCGCTCAAAGGAGTTTACCATCCTTTCCTCTCTGGTGGTGTCACTGTCCCTACTGTTAGCGTTGGACAAGCTTTTGCAACTGAGTTTATCATCACTTTTATTCTCTTGTTTGTTGTTACTGCTGTTGCTACTGATTCCCGTGCGGTACGTTCAATTCATTCATTCGTTTGTGTTATCTTTTTTAACTTCATTGATCATCTTTTTTAACTGCGTTGACCACTTAAAAAGTTGCCGCGAAATTTCAAGTTCTCTAAATTGGGTTGAACAAAATAATTTATCTTGAATTATTGAGTTTTTTATGAGTTAAGGTTGTTTTAATTCATGGATTTTATTTTTGTATATGCAATGCAGGTTGGTGAATTGGCTGGTATTGCTGTTGGTGCTACAGTTTTGCTCAACATTCTTATCTCAGGGTATGGAACCTTTTCTCATGAATTGATGTTATTGATTTGTATTTGGTTTTCATAATAGGTGTATATGTCAAATGTTATATTCAGTTGGAATTCAATGATAATGTTTCAAAGGAATTAATCATGAAAAACTATTCCTAAGGTTTTTAATGACATGACTGTGTCCATCAAGTTAGTCTCCGAATATAAATTTTGTCTGAATAATGACAGGATCAGGAACTTAATTTAATCATTTATGAATTAATATGACTGATGCATTTTATTTTTTCGTAGACTAATTTGATTCTATTGTTTACATGATTTGATTTGAGTTCTTTATTCTAAGATTGTGAGTAATGTTGTGGTTGTAAATGCTAGGCCAACAAGTGGTGGTTCCATGAATCCGGTGCGCACCTTAGGTCCAGCCGTTGCAGCAGGAAATTACAAGCATCTCTGGATATATTTGGTGGCACCGACGCTTGGTGCTCTAGCTGGTTCTGGAGTTTATACCGTTATCAAGCTTCGTGATAACGGAGCTGAACCACCTCAACCGGTTAGGAGCTTCCATCGCTAG

Protein sequence

>MS.gene88882.t1

MPESESGTPTAASVPATPDTPGGPLFSSIRIDSLDQRESFAMGRCNMCMPGDKSNSCIANFSAGVRIPSVSLSQKIGAEFVGTFILIYAATAGPIVNNKYNGVETLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWAHVPAYIAAQVSASICACYALKGVYHPFLSGGVTVPTVSVGQAFATEFIITFILLFVVTAVATDSRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHLWIYLVAPTLGALAGSGVYTVIKLRDNGAEPPQPVRSFHR