AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22726


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22726.t1 MTR_7g117970 82.264 265 7 1 1 225 1 265 2.14e-152 424
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22726.t1 AT3G61870 79.310 203 40 1 25 225 70 272 1.33e-115 331
MS.gene22726.t1 AT3G61870 77.241 145 31 1 25 167 70 214 2.48e-79 238

Find 68 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTACCTCAGTAAGTTTC+TGG 0.119805 7.4:+709071 None:intergenic
CAGAGCAATGTGAAGATTTC+TGG 0.157106 7.4:+707446 None:intergenic
TACTCTATATGCTGGCTATT+TGG 0.163712 7.4:-709227 MS.gene22726:CDS
ACTCTATATGCTGGCTATTT+GGG 0.167865 7.4:-709226 MS.gene22726:CDS
AATGCTGGATCCATACTTCT+AGG 0.237863 7.4:-708698 MS.gene22726:CDS
CTTGCTGTTGGTGGAGAGTT+TGG 0.257500 7.4:-709313 MS.gene22726:CDS
CTACAGGCATTACCGTCTTA+TGG 0.261340 7.4:-707518 MS.gene22726:intron
CCAGGTCCACATTTATTTGC+AGG 0.291376 7.4:-708611 MS.gene22726:CDS
GGATCCATACTTCTAGGATT+TGG 0.333492 7.4:-708692 MS.gene22726:CDS
GACACCAAATCCTAGAAGTA+TGG 0.335633 7.4:+708688 None:intergenic
GGTGGCAATGGCGCCGAGTT+AGG 0.351922 7.4:-709204 MS.gene22726:CDS
TTCTGGATTTGAAGTTCAAC+AGG 0.366516 7.4:+709088 None:intergenic
CCACTGGACTTGATATTGTA+TGG 0.370736 7.4:-707386 MS.gene22726:CDS
TTGCTGTTGGTGGAGAGTTT+GGG 0.379213 7.4:-709312 MS.gene22726:CDS
TACAGGCATTACCGTCTTAT+GGG 0.383650 7.4:-707517 MS.gene22726:intron
ATGGGCACTGGCAGCAGCTC+TGG 0.385941 7.4:-707499 MS.gene22726:CDS
AGGACAGGAAAGCTATTTCC+AGG 0.388149 7.4:-708629 MS.gene22726:CDS
CCATCAGGGGCGACCGGTGC+AGG 0.389468 7.4:+709139 None:intergenic
CTCATTCACCCCATTGTGTT+GGG 0.394218 7.4:-709265 MS.gene22726:CDS
TCTAGGATTTGGTGTCTTTG+AGG 0.397090 7.4:-708681 MS.gene22726:CDS
GTTTCAAGTGCTTTACCATC+AGG 0.409813 7.4:+709124 None:intergenic
AAGTGTTTGAGTTCACAAAA+TGG 0.411552 7.4:-707362 MS.gene22726:CDS
TTCTTCTATACTCTATATGC+TGG 0.412278 7.4:-709235 MS.gene22726:CDS
AACAAACCACCCAACACAAT+GGG 0.420393 7.4:+709256 None:intergenic
GTCTTTGAGGCTGTTGGTGG+AGG 0.422220 7.4:-708668 MS.gene22726:CDS
GGAGAGTTTGGGATATTTGA+AGG 0.424876 7.4:-709301 MS.gene22726:CDS
GTTTCACTGCCTTTCTGCAT+CGG 0.434740 7.4:+707471 None:intergenic
AGCTTATCAAAGGTTCATAC+AGG 0.459882 7.4:-708733 MS.gene22726:CDS
CCACATTTATTTGCAGGAGC+AGG 0.460193 7.4:-708605 MS.gene22726:intron
TTTGGTGTCTTTGAGGCTGT+TGG 0.460543 7.4:-708674 MS.gene22726:CDS
TTTGTGTGGCAGATTCCCAC+TGG 0.462816 7.4:-707402 MS.gene22726:CDS
TCTCATTCACCCCATTGTGT+TGG 0.487054 7.4:-709266 MS.gene22726:CDS
TGTCTTGATGCTTGAAAGAA+TGG 0.487965 7.4:+709602 None:intergenic
CTGGCTATTTGGGGTGGCAA+TGG 0.493451 7.4:-709216 MS.gene22726:CDS
CAGGATGCACTTGCTGTTGG+TGG 0.511437 7.4:-709322 MS.gene22726:CDS
CCTGCACCGGTCGCCCCTGA+TGG 0.520003 7.4:-709139 MS.gene22726:CDS
GCTTTACCATCAGGGGCGAC+CGG 0.523702 7.4:+709133 None:intergenic
ATTCACCCCATTGTGTTGGG+TGG 0.524385 7.4:-709262 MS.gene22726:CDS
AGGGATAAACACTTTAATGC+TGG 0.528614 7.4:-708713 MS.gene22726:CDS
GGTGTCTTTGAGGCTGTTGG+TGG 0.529522 7.4:-708671 MS.gene22726:CDS
CTCTATATGCTGGCTATTTG+GGG 0.531439 7.4:-709225 MS.gene22726:CDS
CATTACCGTCTTATGGGCAC+TGG 0.546801 7.4:-707511 MS.gene22726:CDS
TTCAAGTGCTTTACCATCAG+GGG 0.547033 7.4:+709126 None:intergenic
GAGGACTCAACACATGGTTA+AGG 0.547682 7.4:-708649 MS.gene22726:CDS
CCTGCAAATAAATGTGGACC+TGG 0.547982 7.4:+708611 None:intergenic
ATTTGAAGTTCAACAGGTGA+TGG 0.552879 7.4:+709094 None:intergenic
TGAATGTTCTTCTCTTTGTG+TGG 0.562680 7.4:-707416 MS.gene22726:CDS
CTCAACACATGGTTAAGGAC+AGG 0.563107 7.4:-708644 MS.gene22726:CDS
TTTCAAGTGCTTTACCATCA+GGG 0.566094 7.4:+709125 None:intergenic
GAGAGGAAAGAGCTTATCAA+AGG 0.578252 7.4:-708743 MS.gene22726:CDS
CTGGTACCACCGATGCAGAA+AGG 0.580536 7.4:-707480 MS.gene22726:CDS
GAAACAACTCAAACCTGCAC+CGG 0.583822 7.4:-709152 MS.gene22726:CDS
GAACAAACCACCCAACACAA+TGG 0.584006 7.4:+709255 None:intergenic
TGCTGCCAGTGCCCATAAGA+CGG 0.586926 7.4:+707506 None:intergenic
CCTGCTCCTGCAAATAAATG+TGG 0.592193 7.4:+708605 None:intergenic
TCACTGCCTTTCTGCATCGG+TGG 0.596727 7.4:+707474 None:intergenic
GTCTTGATGCTTGAAAGAAT+GGG 0.604119 7.4:+709603 None:intergenic
AAACAGGATGCACTTGCTGT+TGG 0.612832 7.4:-709325 MS.gene22726:intron
CCATACAATATCAAGTCCAG+TGG 0.632516 7.4:+707386 None:intergenic
TGAAGTTCAACAGGTGATGG+CGG 0.633139 7.4:+709097 None:intergenic
AAGCTTGACAAGACTGAGTG+TGG 0.639748 7.4:+709626 None:intergenic
TATATGCTGGCTATTTGGGG+TGG 0.656872 7.4:-709222 MS.gene22726:CDS
CATACAATATCAAGTCCAGT+GGG 0.666329 7.4:+707387 None:intergenic
GCTTATCAAAGGTTCATACA+GGG 0.677877 7.4:-708732 MS.gene22726:CDS
TTGGTGGAGGACTCAACACA+TGG 0.688787 7.4:-708655 MS.gene22726:CDS
CTTGACAAGACTGAGTGTGG+AGG 0.697793 7.4:+709629 None:intergenic
ACAAACCACCCAACACAATG+GGG 0.717466 7.4:+709257 None:intergenic
TCAAATCCAGAAACTTACTG+AGG 0.721925 7.4:-709077 MS.gene22726:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTTTTGTGATGTA+AGG - chr7.4:708003-708022 MS.gene22726:intron 15.0%
!! AAAACAAAAGAGTAAAGATA+TGG + chr7.4:707615-707634 None:intergenic 20.0%
!! ATGAAAGAATAGAATAGAAT+AGG + chr7.4:707592-707611 None:intergenic 20.0%
!! TTTATTTAACAGAAGCAAAA+AGG + chr7.4:708531-708550 None:intergenic 20.0%
!!! AACTAATATTTTATGTGATC+CGG - chr7.4:709321-709340 MS.gene22726:CDS 20.0%
!!! CACATAAAATATTAGTTTGT+TGG + chr7.4:709318-709337 None:intergenic 20.0%
!!! TAAAGAAAATTGATAACACT+TGG - chr7.4:709437-709456 MS.gene22726:intron 20.0%
! AAGCATGCAATAATACATAA+AGG + chr7.4:707954-707973 None:intergenic 25.0%
! AAGTACATTTAGAAAACAGA+GGG + chr7.4:708488-708507 None:intergenic 25.0%
! AATAGGGGTTACTTAAAATT+CGG + chr7.4:709222-709241 None:intergenic 25.0%
! AATCACATTTCCATTCTTAT+TGG - chr7.4:707538-707557 MS.gene22726:intron 25.0%
! ACATAGATGAACTTATTAGT+GGG - chr7.4:708766-708785 MS.gene22726:intron 25.0%
! AGCATGCAATAATACATAAA+GGG + chr7.4:707953-707972 None:intergenic 25.0%
! ATCTAATGAAAACTTTAGTG+GGG + chr7.4:707474-707493 None:intergenic 25.0%
! CAAACTTAGTATTAAAATCC+AGG + chr7.4:708149-708168 None:intergenic 25.0%
! GATCTAATGAAAACTTTAGT+GGG + chr7.4:707475-707494 None:intergenic 25.0%
! TAAGTACATTTAGAAAACAG+AGG + chr7.4:708489-708508 None:intergenic 25.0%
! TCACATTGAGAGAAAAATAA+GGG - chr7.4:709069-709088 MS.gene22726:intron 25.0%
! TCTTATCTTTATCCCAAAAT+TGG + chr7.4:709352-709371 None:intergenic 25.0%
! TGATCTAATGAAAACTTTAG+TGG + chr7.4:707476-707495 None:intergenic 25.0%
! TTTCAACAACATTCATATCA+TGG + chr7.4:707647-707666 None:intergenic 25.0%
!! AATTTGCTCTTGAATCAAAT+GGG + chr7.4:708423-708442 None:intergenic 25.0%
!! ACTAATATTTTATGTGATCC+GGG - chr7.4:709322-709341 MS.gene22726:CDS 25.0%
!!! CACAAACTTGTTAAATCTTA+AGG - chr7.4:708733-708752 MS.gene22726:CDS 25.0%
!!! TAATTTGCTCTTGAATCAAA+TGG + chr7.4:708424-708443 None:intergenic 25.0%
!!! TGATTATCACTTTTCTGAAT+GGG + chr7.4:708917-708936 None:intergenic 25.0%
!!! TTGATTATCACTTTTCTGAA+TGG + chr7.4:708918-708937 None:intergenic 25.0%
AAAGTAGTAAAGTGAAGGTT+GGG + chr7.4:708822-708841 None:intergenic 30.0%
ACAACATTCATATCATGGAT+TGG + chr7.4:707642-707661 None:intergenic 30.0%
AGATGACAGGGTATAAATTT+AGG + chr7.4:708562-708581 None:intergenic 30.0%
AGTACATTTAGAAAACAGAG+GGG + chr7.4:708487-708506 None:intergenic 30.0%
AGTGGTAGTTTCATTAACTA+TGG - chr7.4:708120-708139 MS.gene22726:intron 30.0%
ATATTCAATCTGACGAAGTT+GGG - chr7.4:709375-709394 MS.gene22726:intron 30.0%
ATATTGAATTTGGATGGAAG+TGG + chr7.4:707440-707459 None:intergenic 30.0%
ATCCATAACTTGACTAAACA+AGG - chr7.4:708876-708895 MS.gene22726:intron 30.0%
ATGTACTTAAGAATTAGAGG+GGG - chr7.4:709100-709119 MS.gene22726:CDS 30.0%
ATGTATTATTGCATGCTTCT+TGG - chr7.4:707956-707975 MS.gene22726:intron 30.0%
ATTAAGAAGAACTTTCTCTC+AGG + chr7.4:708856-708875 None:intergenic 30.0%
CACATAGATGAACTTATTAG+TGG - chr7.4:708765-708784 MS.gene22726:intron 30.0%
CATGTACTTAAGAATTAGAG+GGG - chr7.4:709099-709118 MS.gene22726:CDS 30.0%
CTAAGTTTGTAATTAGTGAG+AGG - chr7.4:708160-708179 MS.gene22726:intron 30.0%
GATATGAATGTTGTTGAAAC+AGG - chr7.4:707648-707667 MS.gene22726:intron 30.0%
GATGACAGGGTATAAATTTA+GGG + chr7.4:708561-708580 None:intergenic 30.0%
GCATGTACTTAAGAATTAGA+GGG - chr7.4:709098-709117 MS.gene22726:CDS 30.0%
GCTGTTTAAAAATGCATCAA+GGG + chr7.4:708456-708475 None:intergenic 30.0%
GTCACATTGAGAGAAAAATA+AGG - chr7.4:709068-709087 MS.gene22726:intron 30.0%
TATATTCAATCTGACGAAGT+TGG - chr7.4:709374-709393 MS.gene22726:intron 30.0%
TCCATAACTTGACTAAACAA+GGG - chr7.4:708877-708896 MS.gene22726:intron 30.0%
TTCTTCTATACTCTATATGC+TGG - chr7.4:707754-707773 MS.gene22726:intron 30.0%
TTTCATTAACTATGGTATCC+TGG - chr7.4:708128-708147 MS.gene22726:intron 30.0%
! AAGTGTTTGAGTTCACAAAA+TGG - chr7.4:709627-709646 MS.gene22726:CDS 30.0%
! ACAATTTGTTCAAACGTTCA+AGG + chr7.4:708691-708710 None:intergenic 30.0%
! AGACATTTTTACAAGATGAC+AGG + chr7.4:708575-708594 None:intergenic 30.0%
! CATTTTGAATAGTCCTAACT+CGG + chr7.4:707801-707820 None:intergenic 30.0%
! GACATTTTTACAAGATGACA+GGG + chr7.4:708574-708593 None:intergenic 30.0%
! GATGTAATGGAAAGTAGTTA+CGG - chr7.4:709158-709177 MS.gene22726:CDS 30.0%
! TGCTGTTTAAAAATGCATCA+AGG + chr7.4:708457-708476 None:intergenic 30.0%
! TTTGTGATGTAAGGACTTTT+CGG - chr7.4:708012-708031 MS.gene22726:intron 30.0%
!! AAAAAGGTGTTACCTGTAAA+TGG + chr7.4:708515-708534 None:intergenic 30.0%
!! ATTTTGAAAGATCTCAGATG+AGG - chr7.4:709133-709152 MS.gene22726:CDS 30.0%
!! TACAAAGTGTTGTCAAATAG+TGG - chr7.4:709263-709282 MS.gene22726:CDS 30.0%
AATGAAAACTTTAGTGGGGT+GGG + chr7.4:707470-707489 None:intergenic 35.0%
AGAACTTTCTCTCAGGTTTA+AGG + chr7.4:708849-708868 None:intergenic 35.0%
AGCTCCTTCTAGATTAAGTA+CGG + chr7.4:708627-708646 None:intergenic 35.0%
AGCTTATCAAAGGTTCATAC+AGG - chr7.4:708256-708275 MS.gene22726:intron 35.0%
AGGGATAAACACTTTAATGC+TGG - chr7.4:708276-708295 MS.gene22726:intron 35.0%
ATCGAGTATCTCTGAACAAT+AGG + chr7.4:709239-709258 None:intergenic 35.0%
ATGTACTTACCTCCATTTAC+AGG - chr7.4:708500-708519 MS.gene22726:intron 35.0%
CAAAGTAGTAAAGTGAAGGT+TGG + chr7.4:708823-708842 None:intergenic 35.0%
CAGTAACCAACCAACAAATT+AGG + chr7.4:708218-708237 None:intergenic 35.0%
CATAACTTGACTAAACAAGG+GGG - chr7.4:708879-708898 MS.gene22726:intron 35.0%
CATACAATATCAAGTCCAGT+GGG + chr7.4:709605-709624 None:intergenic 35.0%
CATTGAGAGAAAAATAAGGG+AGG - chr7.4:709072-709091 MS.gene22726:intron 35.0%
CCATAACTTGACTAAACAAG+GGG - chr7.4:708878-708897 MS.gene22726:intron 35.0%
CGCATGTACTTAAGAATTAG+AGG - chr7.4:709097-709116 MS.gene22726:CDS 35.0%
GCATCAAAGTAGTAAAGTGA+AGG + chr7.4:708827-708846 None:intergenic 35.0%
GCTTATCAAAGGTTCATACA+GGG - chr7.4:708257-708276 MS.gene22726:intron 35.0%
GGGACAATATTGAATTTGGA+TGG + chr7.4:707446-707465 None:intergenic 35.0%
GTACATTTAGAAAACAGAGG+GGG + chr7.4:708486-708505 None:intergenic 35.0%
GTCTTGATGCTTGAAAGAAT+GGG + chr7.4:707389-707408 None:intergenic 35.0%
GTGAATTGAGAGAGATTACA+GGG - chr7.4:709012-709031 MS.gene22726:intron 35.0%
GTTTAAAAATGCATCAAGGG+AGG + chr7.4:708453-708472 None:intergenic 35.0%
TAATGAAAACTTTAGTGGGG+TGG + chr7.4:707471-707490 None:intergenic 35.0%
TATTATTGCATGCTTCTTGG+TGG - chr7.4:707959-707978 MS.gene22726:intron 35.0%
TCAAATCCAGAAACTTACTG+AGG - chr7.4:707912-707931 MS.gene22726:intron 35.0%
TCCATTCTTATTGGATACCA+AGG - chr7.4:707547-707566 MS.gene22726:intron 35.0%
TCGAGTATCTCTGAACAATA+GGG + chr7.4:709238-709257 None:intergenic 35.0%
TGAAACTACCACTGATAAGA+AGG + chr7.4:708113-708132 None:intergenic 35.0%
TGAATGTTCTTCTCTTTGTG+TGG - chr7.4:709573-709592 MS.gene22726:intron 35.0%
TGAATTGAGAGAGATTACAG+GGG - chr7.4:709013-709032 MS.gene22726:intron 35.0%
TGGCAATAACAATGCTATAG+CGG - chr7.4:709283-709302 MS.gene22726:CDS 35.0%
TGTCTTGATGCTTGAAAGAA+TGG + chr7.4:707390-707409 None:intergenic 35.0%
TGTGAATTGAGAGAGATTAC+AGG - chr7.4:709011-709030 MS.gene22726:intron 35.0%
! AAGTGGAACAACATGTTTTG+AGG + chr7.4:707423-707442 None:intergenic 35.0%
! ACTCTATATGCTGGCTATTT+GGG - chr7.4:707763-707782 MS.gene22726:intron 35.0%
! AGATGAACTTATTAGTGGGT+TGG - chr7.4:708770-708789 MS.gene22726:intron 35.0%
! ATTAACGGTGTTAGAGGAAA+AGG - chr7.4:709036-709055 MS.gene22726:intron 35.0%
! ATTTGAAGTTCAACAGGTGA+TGG + chr7.4:707898-707917 None:intergenic 35.0%
! CTGATGAGTACCTAATTTGT+TGG - chr7.4:708205-708224 MS.gene22726:intron 35.0%
! CTTGGATAATTTTTCCCTAC+AGG - chr7.4:709455-709474 MS.gene22726:intron 35.0%
! GGACTTTTCGGATTAAGTAA+TGG - chr7.4:708024-708043 MS.gene22726:intron 35.0%
! TACTCTATATGCTGGCTATT+TGG - chr7.4:707762-707781 MS.gene22726:intron 35.0%
! TTAACGGTGTTAGAGGAAAA+GGG - chr7.4:709037-709056 MS.gene22726:intron 35.0%
! TTCTGGATTTGAAGTTCAAC+AGG + chr7.4:707904-707923 None:intergenic 35.0%
! TTGGTTGGTTACTGATATTC+AGG - chr7.4:708224-708243 MS.gene22726:intron 35.0%
! TTTCAAGTGCTTTACCATCA+GGG + chr7.4:707867-707886 None:intergenic 35.0%
!! TGAGTACCTAATTTGTTGGT+TGG - chr7.4:708209-708228 MS.gene22726:intron 35.0%
!!! CAACATGTTTTGAGGTTGAT+TGG + chr7.4:707415-707434 None:intergenic 35.0%
!!! GTTGGGAGTTTTAAGTAACA+TGG + chr7.4:708805-708824 None:intergenic 35.0%
AAAACTTCAAGCCATGTGCA+CGG - chr7.4:708942-708961 MS.gene22726:intron 40.0%
AACAAACCACCCAACACAAT+GGG + chr7.4:707736-707755 None:intergenic 40.0%
AATGCTGGATCCATACTTCT+AGG - chr7.4:708291-708310 MS.gene22726:intron 40.0%
AGTACAAGCCTTCTTATCAG+TGG - chr7.4:708102-708121 MS.gene22726:intron 40.0%
ATAAGACGGTAATGCCTGTA+GGG + chr7.4:709472-709491 None:intergenic 40.0%
ATCTTTGTAGCTCTCTGAGT+TGG - chr7.4:709399-709418 MS.gene22726:intron 40.0%
ATGGAAATGTGATTGCTGTG+AGG + chr7.4:707532-707551 None:intergenic 40.0%
CAGAGCAATGTGAAGATTTC+TGG + chr7.4:709546-709565 None:intergenic 40.0%
CCACTGGACTTGATATTGTA+TGG - chr7.4:709603-709622 MS.gene22726:CDS 40.0%
CCATACAATATCAAGTCCAG+TGG + chr7.4:709606-709625 None:intergenic 40.0%
CGAGTATCTCTGAACAATAG+GGG + chr7.4:709237-709256 None:intergenic 40.0%
GACACCAAATCCTAGAAGTA+TGG + chr7.4:708304-708323 None:intergenic 40.0%
GAGAGATTACAGGGGATTAA+CGG - chr7.4:709021-709040 MS.gene22726:intron 40.0%
GAGAGGAAAGAGCTTATCAA+AGG - chr7.4:708246-708265 MS.gene22726:intron 40.0%
GCCTTGGTATCCAATAAGAA+TGG + chr7.4:707551-707570 None:intergenic 40.0%
GGGAGGGACAATATTGAATT+TGG + chr7.4:707450-707469 None:intergenic 40.0%
TACAGGCATTACCGTCTTAT+GGG - chr7.4:709472-709491 MS.gene22726:intron 40.0%
TATCCCAAAATTGGCAATCC+CGG + chr7.4:709343-709362 None:intergenic 40.0%
TCTAGATTAAGTACGGCCAA+TGG + chr7.4:708620-708639 None:intergenic 40.0%
TCTTTGTAGCTCTCTGAGTT+GGG - chr7.4:709400-709419 MS.gene22726:intron 40.0%
TGCTTACCTCAGTAAGTTTC+TGG + chr7.4:707921-707940 None:intergenic 40.0%
TGGAAATGTGATTGCTGTGA+GGG + chr7.4:707531-707550 None:intergenic 40.0%
TGGTTACTGATATTCAGGAG+AGG - chr7.4:708229-708248 MS.gene22726:intron 40.0%
TTCAAGTGCTTTACCATCAG+GGG + chr7.4:707866-707885 None:intergenic 40.0%
TTGACGAACATTCTACCTGT+CGG + chr7.4:708666-708685 None:intergenic 40.0%
TTGGCCGTACTTAATCTAGA+AGG - chr7.4:708620-708639 MS.gene22726:CDS 40.0%
! AAGGTGTTACCTGTAAATGG+AGG + chr7.4:708512-708531 None:intergenic 40.0%
! CCCCTTGTTTAGTCAAGTTA+TGG + chr7.4:708881-708900 None:intergenic 40.0%
! CTCTATATGCTGGCTATTTG+GGG - chr7.4:707764-707783 MS.gene22726:intron 40.0%
! CTCTGAGTTGGGAATTGTAT+TGG - chr7.4:709411-709430 MS.gene22726:intron 40.0%
! GGAGAGTTTGGGATATTTGA+AGG - chr7.4:707688-707707 MS.gene22726:intron 40.0%
! GTTTCAAGTGCTTTACCATC+AGG + chr7.4:707868-707887 None:intergenic 40.0%
! TTTTGATACTTCCGTGCACA+TGG + chr7.4:708956-708975 None:intergenic 40.0%
!! GGATCCATACTTCTAGGATT+TGG - chr7.4:708297-708316 MS.gene22726:intron 40.0%
!! TCTAGGATTTGGTGTCTTTG+AGG - chr7.4:708308-708327 MS.gene22726:intron 40.0%
AAAACTTTAGTGGGGTGGGA+GGG + chr7.4:707466-707485 None:intergenic 45.0%
AAGCTTGACAAGACTGAGTG+TGG + chr7.4:707366-707385 None:intergenic 45.0%
ACAAACCACCCAACACAATG+GGG + chr7.4:707735-707754 None:intergenic 45.0%
CACAATCATAACCCCCACTT+TGG + chr7.4:708995-709014 None:intergenic 45.0%
CATAAGACGGTAATGCCTGT+AGG + chr7.4:709473-709492 None:intergenic 45.0%
CCACATTTATTTGCAGGAGC+AGG - chr7.4:708384-708403 MS.gene22726:intron 45.0%
CCAGGTCCACATTTATTTGC+AGG - chr7.4:708378-708397 MS.gene22726:intron 45.0%
CCTGCAAATAAATGTGGACC+TGG + chr7.4:708381-708400 None:intergenic 45.0%
CCTGCTCCTGCAAATAAATG+TGG + chr7.4:708387-708406 None:intergenic 45.0%
CTACAGGCATTACCGTCTTA+TGG - chr7.4:709471-709490 MS.gene22726:intron 45.0%
CTCAACACATGGTTAAGGAC+AGG - chr7.4:708345-708364 MS.gene22726:intron 45.0%
CTCAGATGAGGTCGATGTAA+TGG - chr7.4:709145-709164 MS.gene22726:CDS 45.0%
CTCATTCACCCCATTGTGTT+GGG - chr7.4:707724-707743 MS.gene22726:intron 45.0%
GAAACAACTCAAACCTGCAC+CGG - chr7.4:707837-707856 MS.gene22726:intron 45.0%
GAACAAACCACCCAACACAA+TGG + chr7.4:707737-707756 None:intergenic 45.0%
GAGGACTCAACACATGGTTA+AGG - chr7.4:708340-708359 MS.gene22726:intron 45.0%
GTTTCACTGCCTTTCTGCAT+CGG + chr7.4:709521-709540 None:intergenic 45.0%
TCTCATTCACCCCATTGTGT+TGG - chr7.4:707723-707742 MS.gene22726:intron 45.0%
! AGGACAGGAAAGCTATTTCC+AGG - chr7.4:708360-708379 MS.gene22726:intron 45.0%
! GATCCGGGATTGCCAATTTT+GGG - chr7.4:709337-709356 MS.gene22726:intron 45.0%
! TATATGCTGGCTATTTGGGG+TGG - chr7.4:707767-707786 MS.gene22726:intron 45.0%
! TGAAGTTCAACAGGTGATGG+CGG + chr7.4:707895-707914 None:intergenic 45.0%
! TGATCCGGGATTGCCAATTT+TGG - chr7.4:709336-709355 MS.gene22726:intron 45.0%
! TTGCTGTTGGTGGAGAGTTT+GGG - chr7.4:707677-707696 MS.gene22726:intron 45.0%
!! AAACAGGATGCACTTGCTGT+TGG - chr7.4:707664-707683 MS.gene22726:intron 45.0%
!! ACCTGTCGGTTTCAAACTCT+TGG + chr7.4:708652-708671 None:intergenic 45.0%
!! CCTGTCGGTTTCAAACTCTT+GGG + chr7.4:708651-708670 None:intergenic 45.0%
!! TTTGGTGTCTTTGAGGCTGT+TGG - chr7.4:708315-708334 MS.gene22726:intron 45.0%
AATGGTGACCGTGGCACTTT+GGG + chr7.4:708602-708621 None:intergenic 50.0%
ACTTTGGCGCACACAGAGAA+AGG + chr7.4:708979-708998 None:intergenic 50.0%
ATTCACCCCATTGTGTTGGG+TGG - chr7.4:707727-707746 MS.gene22726:intron 50.0%
CATTACCGTCTTATGGGCAC+TGG - chr7.4:709478-709497 MS.gene22726:intron 50.0%
CTTGACAAGACTGAGTGTGG+AGG + chr7.4:707363-707382 None:intergenic 50.0%
GAAAACTTTAGTGGGGTGGG+AGG + chr7.4:707467-707486 None:intergenic 50.0%
TTCTCTGTGTGCGCCAAAGT+GGG - chr7.4:708979-708998 MS.gene22726:intron 50.0%
TTGGTGGAGGACTCAACACA+TGG - chr7.4:708334-708353 MS.gene22726:intron 50.0%
TTTCTCTGTGTGCGCCAAAG+TGG - chr7.4:708978-708997 MS.gene22726:intron 50.0%
TTTGTGTGGCAGATTCCCAC+TGG - chr7.4:709587-709606 MS.gene22726:CDS 50.0%
! ACGGTGTTAGAGGAAAAGGG+AGG - chr7.4:709040-709059 MS.gene22726:intron 50.0%
! CAGGGGATTAACGGTGTTAG+AGG - chr7.4:709030-709049 MS.gene22726:intron 50.0%
! CCCAAGAGTTTGAAACCGAC+AGG - chr7.4:708648-708667 MS.gene22726:CDS 50.0%
!! CTTGCTGTTGGTGGAGAGTT+TGG - chr7.4:707676-707695 MS.gene22726:intron 50.0%
CAATGGTGACCGTGGCACTT+TGG + chr7.4:708603-708622 None:intergenic 55.0%
CTGGTACCACCGATGCAGAA+AGG - chr7.4:709509-709528 MS.gene22726:intron 55.0%
GCTTGCTTGCTTGCTTGCCT+TGG + chr7.4:707567-707586 None:intergenic 55.0%
TCACTGCCTTTCTGCATCGG+TGG + chr7.4:709518-709537 None:intergenic 55.0%
TCTCTGTGTGCGCCAAAGTG+GGG - chr7.4:708980-708999 MS.gene22726:intron 55.0%
TGCTGCCAGTGCCCATAAGA+CGG + chr7.4:709486-709505 None:intergenic 55.0%
! CAAAGTGCCACGGTCACCAT+TGG - chr7.4:708601-708620 MS.gene22726:intron 55.0%
! CTGGCTATTTGGGGTGGCAA+TGG - chr7.4:707773-707792 MS.gene22726:intron 55.0%
! GTCTTCGTCCCAAAGTGCCA+CGG - chr7.4:708591-708610 MS.gene22726:intron 55.0%
!! CAGGATGCACTTGCTGTTGG+TGG - chr7.4:707667-707686 MS.gene22726:intron 55.0%
!! GGTGTCTTTGAGGCTGTTGG+TGG - chr7.4:708318-708337 MS.gene22726:intron 55.0%
!! GTCTTTGAGGCTGTTGGTGG+AGG - chr7.4:708321-708340 MS.gene22726:intron 55.0%
AGTACGGCCAATGGTGACCG+TGG + chr7.4:708611-708630 None:intergenic 60.0%
CTCTGTGTGCGCCAAAGTGG+GGG - chr7.4:708981-709000 MS.gene22726:intron 60.0%
GCTTTACCATCAGGGGCGAC+CGG + chr7.4:707859-707878 None:intergenic 60.0%
! GGTGGCAATGGCGCCGAGTT+AGG - chr7.4:707785-707804 MS.gene22726:intron 65.0%
!! ATGGGCACTGGCAGCAGCTC+TGG - chr7.4:709490-709509 MS.gene22726:intron 65.0%
CCATCAGGGGCGACCGGTGC+AGG + chr7.4:707853-707872 None:intergenic 75.0%
! CCTGCACCGGTCGCCCCTGA+TGG - chr7.4:707850-707869 MS.gene22726:intron 75.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 707356 709655 707356 ID=MS.gene22726
chr7.4 mRNA 707356 709655 707356 ID=MS.gene22726.t1;Parent=MS.gene22726
chr7.4 exon 709581 709655 709581 ID=MS.gene22726.t1.exon1;Parent=MS.gene22726.t1
chr7.4 CDS 709581 709655 709581 ID=cds.MS.gene22726.t1;Parent=MS.gene22726.t1
chr7.4 exon 709078 709341 709078 ID=MS.gene22726.t1.exon2;Parent=MS.gene22726.t1
chr7.4 CDS 709078 709341 709078 ID=cds.MS.gene22726.t1;Parent=MS.gene22726.t1
chr7.4 exon 708606 708765 708606 ID=MS.gene22726.t1.exon3;Parent=MS.gene22726.t1
chr7.4 CDS 708606 708765 708606 ID=cds.MS.gene22726.t1;Parent=MS.gene22726.t1
chr7.4 exon 707356 707534 707356 ID=MS.gene22726.t1.exon4;Parent=MS.gene22726.t1
chr7.4 CDS 707356 707534 707356 ID=cds.MS.gene22726.t1;Parent=MS.gene22726.t1
Gene Sequence

>MS.gene22726

ATGGCCTCCACACTCAGTCTTGTCAAGCTTCCCATTCTTTCAAGCATCAAGACACGCCAATCAACCTCAAAACATGTTGTTCCACTTCCATCCAAATTCAATATTGTCCCTCCCACCCCACTAAAGTTTTCATTAGATCATCAAATTAATATCAAACAAACTTCTCTTCTATCCCTCACAGCAATCACATTTCCATTCTTATTGGATACCAAGGCAAGCAAGCAAGCAAGCATCCTATTCTATTCTATTCTTTCATCCATATCTTTACTCTTTTGTTTTCTAACCAATCCATGATATGAATGTTGTTGAAACAGGATGCACTTGCTGTTGGTGGAGAGTTTGGGATATTTGAAGGAAGAACATTTGCTCTCATTCACCCCATTGTGTTGGGTGGTTTGTTCTTCTATACTCTATATGCTGGCTATTTGGGGTGGCAATGGCGCCGAGTTAGGACTATTCAAAATGATATTAATGAGCTCAAGAAACAACTCAAACCTGCACCGGTCGCCCCTGATGGTAAAGCACTTGAAACTTCACCGCCATCACCTGTTGAACTTCAAATCCAGAAACTTACTGAGGTAAGCAGTAGTAGTACCCTTTATGTATTATTGCATGCTTCTTGGTGGTGATATATATATATATATATATATTTTTTTTTTGTGATGTAAGGACTTTTCGGATTAAGTAATGGACATTGATTTTTATCATTAGATGAGCAATTTAGCTTATGTGTTATTTGAATCATTAGTACAAGCCTTCTTATCAGTGGTAGTTTCATTAACTATGGTATCCTGGATTTTAATACTAAGTTTGTAATTAGTGAGAGGAACTATACATAAAATGCTGAATCTGATGAGTACCTAATTTGTTGGTTGGTTACTGATATTCAGGAGAGGAAAGAGCTTATCAAAGGTTCATACAGGGATAAACACTTTAATGCTGGATCCATACTTCTAGGATTTGGTGTCTTTGAGGCTGTTGGTGGAGGACTCAACACATGGTTAAGGACAGGAAAGCTATTTCCAGGTCCACATTTATTTGCAGGAGCAGGTAAACACTAAATTCCCATTTGATTCAAGAGCAAATTACACTTACCTCCCTTGATGCATTTTTAAACAGCACAAACACCCCCTCTGTTTTCTAAATGTACTTACCTCCATTTACAGGTAACACCTTTTTGCTTCTGTTAAATAAAACTAAATCCCTAAATTTATACCCTGTCATCTTGTAAAAATGTCTTCGTCCCAAAGTGCCACGGTCACCATTGGCCGTACTTAATCTAGAAGGAGCTTCCCAAGAGTTTGAAACCGACAGGTAGAATGTTCGTCAAAGCCTTGAACGTTTGAACAAATTGTACAGAAACAGATTGAAAATCAACACAAACTTGTTAAATCTTAAGGCACAAATAGCACATAGATGAACTTATTAGTGGGTTGGCAAAGCAATCCATGTTACTTAAAACTCCCAACCTTCACTTTACTACTTTGATGCCTTAAACCTGAGAGAAAGTTCTTCTTAATATCCATAACTTGACTAAACAAGGGGGTTAGCAAAGCAACCCATTCAGAAAAGTGATAATCAATTCAAAAACTTCAAGCCATGTGCACGGAAGTATCAAAACCTTTCTCTGTGTGCGCCAAAGTGGGGGTTATGATTGTGAATTGAGAGAGATTACAGGGGATTAACGGTGTTAGAGGAAAAGGGAGGTTAATGTCACATTGAGAGAAAAATAAGGGAGGTTCGCATGTACTTAAGAATTAGAGGGGGTGTTTGTGCTATTTTGAAAGATCTCAGATGAGGTCGATGTAATGGAAAGTAGTTACGGTAAAGCAATTTTTTCAAATAGTAGTAGCTATAGCGTAACCGAATTTTAAGTAACCCCTATTGTTCAGAGATACTCGATTTAGTACAAAGTGTTGTCAAATAGTGGCAATAACAATGCTATAGCGGTGTAGTGTACCAACAAACTAATATTTTATGTGATCCGGGATTGCCAATTTTGGGATAAAGATAAGAAATATATTCAATCTGACGAAGTTGGGAATCTTTGTAGCTCTCTGAGTTGGGAATTGTATTGGTTTTAAAGAAAATTGATAACACTTGGATAATTTTTCCCTACAGGCATTACCGTCTTATGGGCACTGGCAGCAGCTCTGGTACCACCGATGCAGAAAGGCAGTGAAACAGCCAGAAATCTTCACATTGCTCTGAATACATTGAATGTTCTTCTCTTTGTGTGGCAGATTCCCACTGGACTTGATATTGTATGGAAAGTGTTTGAGTTCACAAAATGGCCTTGA

Protein sequence

>MS.gene22726.t1

MASTLSLVKLPILSSIKTRQSTSKHDALAVGGEFGIFEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVRTIQNDINELKKQLKPAPVAPDGKALETSPPSPVELQIQKLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVLWALAAALVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTKWP