AlfalfaGEDB | MS.gene061866

M. sativa cultivar XinJiangDaYe / MS.gene061866

KEGG: K11254
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF15511.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061866.t1	KCW52694.1	100	103	0	0	1	103	4	106	7.50E-48	199.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061866.t1	P62785	100.0	103	0	0	1	103	1	103	1.8e-50	199.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061866.t1	M5VRN0	100.0	103	0	0	1	103	1	103	5.4e-48	199.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene061866	0.846853	1.67E-59	-1.69E-46
MS.gene049159	MS.gene061866	0.833466	5.25E-56	-1.69E-46
MS.gene049255	MS.gene061866	0.836638	8.32E-57	-1.69E-46
MS.gene049341	MS.gene061866	0.826514	2.60E-54	-1.69E-46
MS.gene049350	MS.gene061866	0.837281	5.70E-57	-1.69E-46
MS.gene049501	MS.gene061866	0.817845	2.67E-52	-1.69E-46
MS.gene049821	MS.gene061866	0.893822	4.39E-75	-1.69E-46
MS.gene049825	MS.gene061866	0.800012	1.76E-48	-1.69E-46
MS.gene049850	MS.gene061866	0.85639	3.32E-62	-1.69E-46
MS.gene049873	MS.gene061866	0.817261	3.61E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene008276	MS.gene061866	PPI
MS.gene009027	MS.gene061866	PPI
MS.gene010219	MS.gene061866	PPI
MS.gene010220	MS.gene061866	PPI
MS.gene012390	MS.gene061866	PPI
MS.gene012391	MS.gene061866	PPI
MS.gene022932	MS.gene061866	PPI
MS.gene022946	MS.gene061866	PPI
MS.gene028629	MS.gene061866	PPI
MS.gene035718	MS.gene061866	PPI

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061866.t1	MTR_7g029510	100.000	103	1	103	1	103	2.85e-68	199
MS.gene061866.t1	MTR_7g099610	100.000	103	1	103	1	103	2.85e-68	199
MS.gene061866.t1	MTR_5g063620	100.000	103	1	103	1	103	2.85e-68	199
MS.gene061866.t1	MTR_4g061827	100.000	103	1	103	1	103	2.85e-68	199
MS.gene061866.t1	MTR_4g061920	100.000	103	1	103	1	103	2.85e-68	199
MS.gene061866.t1	MTR_3g462400	100.000	103	1	103	1	103	2.85e-68	199
MS.gene061866.t1	MTR_3g054380	100.000	103	1	103	1	103	2.85e-68	199
MS.gene061866.t1	MTR_3g462730	100.000	103	1	103	1	103	2.85e-68	199
MS.gene061866.t1	MTR_3g462510	100.000	103	1	103	1	103	2.85e-68	199
MS.gene061866.t1	MTR_3g070920	100.000	103	1	103	1	103	2.85e-68	199

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061866.t1	AT5G59970	100.000	103	1	103	1	103	2.99e-68	199
MS.gene061866.t1	AT5G59690	100.000	103	1	103	1	103	2.99e-68	199
MS.gene061866.t1	AT5G59970	100.000	103	1	103	1	103	2.99e-68	199
MS.gene061866.t1	AT3G46320	100.000	103	1	103	1	103	2.99e-68	199
MS.gene061866.t1	AT3G45930	100.000	103	1	103	1	103	2.99e-68	199
MS.gene061866.t1	AT3G53730	100.000	103	1	103	1	103	2.99e-68	199
MS.gene061866.t1	AT2G28740	100.000	103	1	103	1	103	2.99e-68	199
MS.gene061866.t1	AT1G07660	100.000	103	1	103	1	103	2.99e-68	199
MS.gene061866.t1	AT1G07820	100.000	103	1	103	1	103	2.99e-68	199
MS.gene061866.t1	AT1G07820	100.000	103	1	103	1	103	2.99e-68	199

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Find 33 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCAGGTCGTGGAAA+AGG	0.512942	7.4:+10747544	None:intergenic
AGCATAGACAACATCCATGG+CGG	0.735882	7.4:-10747794	None:intergenic
AGGACCCTTTACGGTTTCGG+TGG	0.602372	7.4:+10747832	MS.gene061866:CDS
AGGAGCAAAGAGACACAGAA+AGG	0.597296	7.4:+10747588	MS.gene061866:CDS
AGGCAGGGAAGGACCCTTTA+CGG	0.435749	7.4:+10747823	MS.gene061866:CDS
AGGTGGAAAAGGTTTGGGAA+AGG	0.583555	7.4:+10747564	MS.gene061866:CDS
ATCAACCACCGAAACCGTAA+AGG	0.525393	7.4:-10747837	None:intergenic
ATGCTCTCAAGAGGCAGGGA+AGG	0.564763	7.4:+10747812	MS.gene061866:CDS
ATGTCAGGTCGTGGAAAAGG+TGG	0.588325	7.4:+10747547	MS.gene061866:CDS
ATGTTGTCTATGCTCTCAAG+AGG	0.677658	7.4:+10747803	MS.gene061866:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTTGTCTATGCTCTCAAG+AGG	+	chr7.4:10747803-10747822	MS.gene061866:CDS	40.0%
CGGTGTTCTCAAAATCTTCT+TGG	+	chr7.4:10747714-10747733	MS.gene061866:CDS	40.0%
GGAAAAGGTGGAAAAGGTTT+GGG	+	chr7.4:10747559-10747578	MS.gene061866:CDS	40.0%
TGGAAAAGGTGGAAAAGGTT+TGG	+	chr7.4:10747558-10747577	MS.gene061866:CDS	40.0%
AGCATAGACAACATCCATGG+CGG	-	chr7.4:10747797-10747816	None:intergenic	45.0%
AGGAGCAAAGAGACACAGAA+AGG	+	chr7.4:10747588-10747607	MS.gene061866:CDS	45.0%
AGGTGGAAAAGGTTTGGGAA+AGG	+	chr7.4:10747564-10747583	MS.gene061866:CDS	45.0%
CTCATCTATGAAGAGACTCG+CGG	+	chr7.4:10747694-10747713	MS.gene061866:CDS	45.0%
GGTGGAAAAGGTTTGGGAAA+GGG	+	chr7.4:10747565-10747584	MS.gene061866:CDS	45.0%
GTTCTTCGCGATAACATCCA+AGG	+	chr7.4:10747610-10747629	MS.gene061866:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	10747547	10747858	10747547	ID=MS.gene061866
chr7.4	mRNA	10747547	10747858	10747547	ID=MS.gene061866.t1;Parent=MS.gene061866
chr7.4	exon	10747547	10747858	10747547	ID=MS.gene061866.t1.exon1;Parent=MS.gene061866.t1
chr7.4	CDS	10747547	10747858	10747547	ID=cds.MS.gene061866.t1;Parent=MS.gene061866.t1

Gene Sequence	>MS.gene061866 ATGTCAGGTCGTGGAAAAGGTGGAAAAGGTTTGGGAAAGGGAGGAGCAAAGAGACACAGAAAGGTTCTTCGCGATAACATCCAAGGCATAACAAAGCCTGCGATTCGTCGTCTTGCAAGGCGTGGTGGTGTGAAGAGAATCAGCGGTCTCATCTATGAAGAGACTCGCGGTGTTCTCAAAATCTTCTTGGAAAACGTGATTCGCGATGCTGTTACTTACACTGAGCACGCTAGGAGAAAGACTGTTACCGCCATGGATGTTGTCTATGCTCTCAAGAGGCAGGGAAGGACCCTTTACGGTTTCGGTGGTTGA
Protein sequence	>MS.gene061866.t1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG