AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71215


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71215.t1 MTR_7g029510 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_7g099610 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_5g063620 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_4g061827 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_4g061920 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_3g462400 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_3g054380 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_3g462730 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_3g462510 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_3g070920 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_3g061440 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_3g462410 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_2g096100 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_8g038460 100.000 103 0 0 1 103 1 103 2.85e-68 199
MS.gene71215.t1 MTR_4g128150 100.000 102 0 0 1 102 1 102 1.67e-66 204
MS.gene71215.t1 MTR_7g029520 84.000 50 8 0 27 76 1 50 2.15e-21 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71215.t1 AT5G59970 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene71215.t1 AT5G59690 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene71215.t1 AT5G59970 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene71215.t1 AT3G46320 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene71215.t1 AT3G45930 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene71215.t1 AT3G53730 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene71215.t1 AT2G28740 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene71215.t1 AT1G07660 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene71215.t1 AT1G07820 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene71215.t1 AT1G07820 100.000 103 0 0 1 103 1 103 2.99e-68 199
MS.gene71215.t1 AT1G07660 83.495 103 0 1 1 103 1 86 4.34e-51 155

Find 30 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCCTGCGATTCGTCGTT+TGG 0.336158 8.3:-36532729 MS.gene71215:CDS
GGGAGAACTCTTTACGGTTT+CGG 0.376970 8.3:-36532539 MS.gene71215:CDS
TCGCAGGCTTTGTTATTCCT+TGG 0.407291 8.3:+36532741 None:intergenic
AAAATGTCAGGTCGCGGAAA+AGG 0.432832 8.3:-36532824 MS.gene71215:CDS
GGAGGAAAGGGATTGGGAAA+AGG 0.436575 8.3:-36532803 MS.gene71215:CDS
AGACAGGGGAGAACTCTTTA+CGG 0.442868 8.3:-36532545 MS.gene71215:CDS
TGTTTATGCTTTGAAGAGAC+AGG 0.461410 8.3:-36532561 MS.gene71215:CDS
GAGGAAAACCGTTACGGCTA+TGG 0.462806 8.3:-36532588 MS.gene71215:CDS
GGAAAAGGAGGAAAGGGATT+GGG 0.479340 8.3:-36532809 MS.gene71215:CDS
CGGAAAAGGAGGAAAGGGAT+TGG 0.487643 8.3:-36532810 MS.gene71215:CDS
CGTCGTTTGGCTCGAAGAGG+AGG 0.516708 8.3:-36532716 MS.gene71215:CDS
TTACTTACACTGAGCATGCT+AGG 0.518049 8.3:-36532610 MS.gene71215:CDS
GGAAAGGGATTGGGAAAAGG+AGG 0.526255 8.3:-36532800 MS.gene71215:CDS
TGCTAGGAGGAAAACCGTTA+CGG 0.546899 8.3:-36532594 MS.gene71215:CDS
CGAGCCAAACGACGAATCGC+AGG 0.562444 8.3:+36532725 None:intergenic
GGTCGCGGAAAAGGAGGAAA+GGG 0.574670 8.3:-36532815 MS.gene71215:CDS
AGGAGCAAAGAGGCACAGAA+AGG 0.576895 8.3:-36532780 MS.gene71215:CDS
ATGTCAGGTCGCGGAAAAGG+AGG 0.578066 8.3:-36532821 MS.gene71215:CDS
GTTTATGCTTTGAAGAGACA+GGG 0.590468 8.3:-36532560 MS.gene71215:CDS
GGAGGTGTGAAGAGAATCAG+TGG 0.594114 8.3:-36532698 MS.gene71215:CDS
AGGTCGCGGAAAAGGAGGAA+AGG 0.594714 8.3:-36532816 MS.gene71215:CDS
AACAACATCCATAGCCGTAA+CGG 0.596499 8.3:+36532580 None:intergenic
AGAACTCTTTACGGTTTCGG+TGG 0.599890 8.3:-36532536 MS.gene71215:CDS
ATTCGTCGTTTGGCTCGAAG+AGG 0.614299 8.3:-36532719 MS.gene71215:CDS
GTTCTTCGTGACAACATCCA+AGG 0.625870 8.3:-36532758 MS.gene71215:CDS
TTTATGCTTTGAAGAGACAG+GGG 0.664122 8.3:-36532559 MS.gene71215:CDS
CTTATCTATGAAGAAACTCG+CGG 0.683519 8.3:-36532674 MS.gene71215:CDS
CATCACGAATAACGTTCTCG+AGG 0.697048 8.3:+36532636 None:intergenic
CTTACACTGAGCATGCTAGG+AGG 0.700541 8.3:-36532607 MS.gene71215:CDS
TGGGAAAAGGAGGAGCAAAG+AGG 0.707785 8.3:-36532790 MS.gene71215:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
CTTATCTATGAAGAAACTCG+CGG - chr8.3:36532679-36532698 MS.gene71215:CDS 35.0%
!! GTTTATGCTTTGAAGAGACA+GGG - chr8.3:36532793-36532812 MS.gene71215:CDS 35.0%
!! TGTTTATGCTTTGAAGAGAC+AGG - chr8.3:36532792-36532811 MS.gene71215:CDS 35.0%
!! TTTATGCTTTGAAGAGACAG+GGG - chr8.3:36532794-36532813 MS.gene71215:CDS 35.0%
AACAACATCCATAGCCGTAA+CGG + chr8.3:36532776-36532795 None:intergenic 40.0%
TTACTTACACTGAGCATGCT+AGG - chr8.3:36532743-36532762 MS.gene71215:CDS 40.0%
AGAACTCTTTACGGTTTCGG+TGG - chr8.3:36532817-36532836 MS.gene71215:CDS 45.0%
AGACAGGGGAGAACTCTTTA+CGG - chr8.3:36532808-36532827 MS.gene71215:CDS 45.0%
CATCACGAATAACGTTCTCG+AGG + chr8.3:36532720-36532739 None:intergenic 45.0%
GGAAAAGGAGGAAAGGGATT+GGG - chr8.3:36532544-36532563 MS.gene71215:CDS 45.0%
GGGAGAACTCTTTACGGTTT+CGG - chr8.3:36532814-36532833 MS.gene71215:CDS 45.0%
GTTCTTCGTGACAACATCCA+AGG - chr8.3:36532595-36532614 MS.gene71215:CDS 45.0%
TGCTAGGAGGAAAACCGTTA+CGG - chr8.3:36532759-36532778 MS.gene71215:CDS 45.0%
!! TCGCAGGCTTTGTTATTCCT+TGG + chr8.3:36532615-36532634 None:intergenic 45.0%
AAAGCCTGCGATTCGTCGTT+TGG - chr8.3:36532624-36532643 MS.gene71215:CDS 50.0%
CGGAAAAGGAGGAAAGGGAT+TGG - chr8.3:36532543-36532562 MS.gene71215:CDS 50.0%
CTTACACTGAGCATGCTAGG+AGG - chr8.3:36532746-36532765 MS.gene71215:CDS 50.0%
GAGGAAAACCGTTACGGCTA+TGG - chr8.3:36532765-36532784 MS.gene71215:CDS 50.0%
GGAAAGGGATTGGGAAAAGG+AGG - chr8.3:36532553-36532572 MS.gene71215:CDS 50.0%
GGAGGAAAGGGATTGGGAAA+AGG - chr8.3:36532550-36532569 MS.gene71215:CDS 50.0%
TGGGAAAAGGAGGAGCAAAG+AGG - chr8.3:36532563-36532582 MS.gene71215:CDS 50.0%
! AGGAGCAAAGAGGCACAGAA+AGG - chr8.3:36532573-36532592 MS.gene71215:CDS 50.0%
! ATTCGTCGTTTGGCTCGAAG+AGG - chr8.3:36532634-36532653 MS.gene71215:CDS 50.0%
! GGAGGTGTGAAGAGAATCAG+TGG - chr8.3:36532655-36532674 MS.gene71215:CDS 50.0%
AGGTCGCGGAAAAGGAGGAA+AGG - chr8.3:36532537-36532556 MS.gene71215:CDS 55.0%
ATGTCAGGTCGCGGAAAAGG+AGG - chr8.3:36532532-36532551 MS.gene71215:CDS 55.0%
GGTCGCGGAAAAGGAGGAAA+GGG - chr8.3:36532538-36532557 MS.gene71215:CDS 55.0%
CGAGCCAAACGACGAATCGC+AGG + chr8.3:36532631-36532650 None:intergenic 60.0%
! CGTCGTTTGGCTCGAAGAGG+AGG - chr8.3:36532637-36532656 MS.gene71215:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 36532532 36532843 36532532 ID=MS.gene71215
chr8.3 mRNA 36532532 36532843 36532532 ID=MS.gene71215.t1;Parent=MS.gene71215
chr8.3 exon 36532532 36532843 36532532 ID=MS.gene71215.t1.exon1;Parent=MS.gene71215.t1
chr8.3 CDS 36532532 36532843 36532532 ID=cds.MS.gene71215.t1;Parent=MS.gene71215.t1
Gene Sequence

>MS.gene71215

ATGTCAGGTCGCGGAAAAGGAGGAAAGGGATTGGGAAAAGGAGGAGCAAAGAGGCACAGAAAGGTTCTTCGTGACAACATCCAAGGAATAACAAAGCCTGCGATTCGTCGTTTGGCTCGAAGAGGAGGTGTGAAGAGAATCAGTGGTCTTATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTCCTCGAGAACGTTATTCGTGATGCTGTTACTTACACTGAGCATGCTAGGAGGAAAACCGTTACGGCTATGGATGTTGTTTATGCTTTGAAGAGACAGGGGAGAACTCTTTACGGTTTCGGTGGTTGA

Protein sequence

>MS.gene71215.t1

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG