Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71215.t1 | KCW52694.1 | 100 | 103 | 0 | 0 | 1 | 103 | 4 | 106 | 7.50E-48 | 199.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71215.t1 | P62785 | 100.0 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 1.8e-50 | 199.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71215.t1 | M5VRN0 | 100.0 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 5.4e-48 | 199.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049255 | MS.gene71215 | 0.873048 | 1.99E-67 | -1.69E-46 |
MS.gene049340 | MS.gene71215 | 0.810674 | 1.03E-50 | -1.69E-46 |
MS.gene049341 | MS.gene71215 | 0.845577 | 3.72E-59 | -1.69E-46 |
MS.gene049821 | MS.gene71215 | 0.87241 | 3.25E-67 | -1.69E-46 |
MS.gene050020 | MS.gene71215 | 0.831401 | 1.70E-55 | -1.69E-46 |
MS.gene050277 | MS.gene71215 | 0.845867 | 3.11E-59 | -1.69E-46 |
MS.gene050437 | MS.gene71215 | 0.830828 | 2.36E-55 | -1.69E-46 |
MS.gene050689 | MS.gene71215 | 0.849571 | 2.97E-60 | -1.69E-46 |
MS.gene050752 | MS.gene71215 | 0.818418 | 1.98E-52 | -1.69E-46 |
MS.gene050807 | MS.gene71215 | 0.818377 | 2.02E-52 | -1.69E-46 |
MS.gene050808 | MS.gene71215 | 0.804906 | 1.73E-49 | -1.69E-46 |
MS.gene050815 | MS.gene71215 | 0.802134 | 6.48E-49 | -1.69E-46 |
MS.gene050838 | MS.gene71215 | 0.854746 | 1.00E-61 | -1.69E-46 |
MS.gene050901 | MS.gene71215 | 0.832149 | 1.11E-55 | -1.69E-46 |
MS.gene050955 | MS.gene71215 | 0.81098 | 8.80E-51 | -1.69E-46 |
MS.gene051003 | MS.gene71215 | 0.819859 | 9.31E-53 | -1.69E-46 |
MS.gene051233 | MS.gene71215 | 0.80409 | 2.55E-49 | -1.69E-46 |
MS.gene051234 | MS.gene71215 | 0.812442 | 4.23E-51 | -1.69E-46 |
MS.gene051241 | MS.gene71215 | 0.834353 | 3.15E-56 | -1.69E-46 |
MS.gene051243 | MS.gene71215 | 0.83184 | 1.33E-55 | -1.69E-46 |
MS.gene051328 | MS.gene71215 | 0.875796 | 2.32E-68 | -1.69E-46 |
MS.gene051343 | MS.gene71215 | 0.821978 | 3.03E-53 | -1.69E-46 |
MS.gene05134 | MS.gene71215 | 0.843884 | 1.06E-58 | -1.69E-46 |
MS.gene05157 | MS.gene71215 | 0.816956 | 4.23E-52 | -1.69E-46 |
MS.gene051700 | MS.gene71215 | 0.800624 | 1.32E-48 | -1.69E-46 |
MS.gene051789 | MS.gene71215 | 0.801579 | 8.42E-49 | -1.69E-46 |
MS.gene05188 | MS.gene71215 | 0.827169 | 1.81E-54 | -1.69E-46 |
MS.gene051903 | MS.gene71215 | 0.813745 | 2.19E-51 | -1.69E-46 |
MS.gene051975 | MS.gene71215 | 0.825593 | 4.31E-54 | -1.69E-46 |
MS.gene052133 | MS.gene71215 | 0.874168 | 8.34E-68 | -1.69E-46 |
MS.gene052516 | MS.gene71215 | 0.808087 | 3.68E-50 | -1.69E-46 |
MS.gene052879 | MS.gene71215 | 0.827058 | 1.93E-54 | -1.69E-46 |
MS.gene052880 | MS.gene71215 | 0.813501 | 2.48E-51 | -1.69E-46 |
MS.gene052947 | MS.gene71215 | 0.873779 | 1.13E-67 | -1.69E-46 |
MS.gene053058 | MS.gene71215 | 0.820138 | 8.03E-53 | -1.69E-46 |
MS.gene053122 | MS.gene71215 | 0.80634 | 8.63E-50 | -1.69E-46 |
MS.gene053563 | MS.gene71215 | 0.814569 | 1.44E-51 | -1.69E-46 |
MS.gene053581 | MS.gene71215 | 0.847398 | 1.19E-59 | -1.69E-46 |
MS.gene053590 | MS.gene71215 | 0.8074 | 5.15E-50 | -1.69E-46 |
MS.gene05364 | MS.gene71215 | 0.81701 | 4.12E-52 | -1.69E-46 |
MS.gene054403 | MS.gene71215 | 0.81691 | 4.33E-52 | -1.69E-46 |
MS.gene055162 | MS.gene71215 | 0.822479 | 2.32E-53 | -1.69E-46 |
MS.gene055466 | MS.gene71215 | 0.805848 | 1.10E-49 | -1.69E-46 |
MS.gene055468 | MS.gene71215 | 0.818157 | 2.27E-52 | -1.69E-46 |
MS.gene055512 | MS.gene71215 | 0.804683 | 1.92E-49 | -1.69E-46 |
MS.gene055808 | MS.gene71215 | 0.804185 | 2.44E-49 | -1.69E-46 |
MS.gene055912 | MS.gene71215 | 0.837996 | 3.74E-57 | -1.69E-46 |
MS.gene05608 | MS.gene71215 | 0.804707 | 1.90E-49 | -1.69E-46 |
MS.gene056215 | MS.gene71215 | 0.858033 | 1.09E-62 | -1.69E-46 |
MS.gene056580 | MS.gene71215 | 0.835604 | 1.52E-56 | -1.69E-46 |
MS.gene056631 | MS.gene71215 | 0.848427 | 6.17E-60 | -1.69E-46 |
MS.gene056760 | MS.gene71215 | 0.807293 | 5.42E-50 | -1.69E-46 |
MS.gene05712 | MS.gene71215 | 0.802364 | 5.81E-49 | -1.69E-46 |
MS.gene057234 | MS.gene71215 | 0.822045 | 2.92E-53 | -1.69E-46 |
MS.gene057693 | MS.gene71215 | 0.813648 | 2.30E-51 | -1.69E-46 |
MS.gene057694 | MS.gene71215 | 0.852469 | 4.52E-61 | -1.69E-46 |
MS.gene057705 | MS.gene71215 | 0.883308 | 5.01E-71 | -1.69E-46 |
MS.gene058054 | MS.gene71215 | 0.809129 | 2.20E-50 | -1.69E-46 |
MS.gene058055 | MS.gene71215 | 0.829339 | 5.44E-55 | -1.69E-46 |
MS.gene058238 | MS.gene71215 | 0.811821 | 5.78E-51 | -1.69E-46 |
MS.gene058852 | MS.gene71215 | 0.805194 | 1.50E-49 | -1.69E-46 |
MS.gene058906 | MS.gene71215 | 0.825973 | 3.50E-54 | -1.69E-46 |
MS.gene058976 | MS.gene71215 | 0.83306 | 6.62E-56 | -1.69E-46 |
MS.gene059006 | MS.gene71215 | 0.802318 | 5.94E-49 | -1.69E-46 |
MS.gene059146 | MS.gene71215 | 0.800228 | 1.59E-48 | -1.69E-46 |
MS.gene05978 | MS.gene71215 | 0.839391 | 1.63E-57 | -1.69E-46 |
MS.gene06001 | MS.gene71215 | 0.844085 | 9.41E-59 | -1.69E-46 |
MS.gene060429 | MS.gene71215 | 0.874899 | 4.71E-68 | -1.69E-46 |
MS.gene060587 | MS.gene71215 | 0.824022 | 1.01E-53 | -1.69E-46 |
MS.gene060917 | MS.gene71215 | 0.842861 | 2.00E-58 | -1.69E-46 |
MS.gene061176 | MS.gene71215 | 0.829009 | 6.54E-55 | -1.69E-46 |
MS.gene061177 | MS.gene71215 | 0.829539 | 4.87E-55 | -1.69E-46 |
MS.gene061178 | MS.gene71215 | 0.829024 | 6.49E-55 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71215.t1 | MTR_7g029510 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_7g099610 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_5g063620 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_4g061827 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_4g061920 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_3g462400 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_3g054380 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_3g462730 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_3g462510 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_3g070920 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_3g061440 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_3g462410 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_2g096100 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_8g038460 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene71215.t1 | MTR_4g128150 | 100.000 | 102 | 0 | 0 | 1 | 102 | 1 | 102 | 1.67e-66 | 204 |
MS.gene71215.t1 | MTR_7g029520 | 84.000 | 50 | 8 | 0 | 27 | 76 | 1 | 50 | 2.15e-21 | 87.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71215.t1 | AT5G59970 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene71215.t1 | AT5G59690 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene71215.t1 | AT5G59970 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene71215.t1 | AT3G46320 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene71215.t1 | AT3G45930 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene71215.t1 | AT3G53730 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene71215.t1 | AT2G28740 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene71215.t1 | AT1G07660 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene71215.t1 | AT1G07820 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene71215.t1 | AT1G07820 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene71215.t1 | AT1G07660 | 83.495 | 103 | 0 | 1 | 1 | 103 | 1 | 86 | 4.34e-51 | 155 |
Find 30 sgRNAs with CRISPR-Local
Find 29 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGCCTGCGATTCGTCGTT+TGG | 0.336158 | 8.3:-36532729 | MS.gene71215:CDS |
GGGAGAACTCTTTACGGTTT+CGG | 0.376970 | 8.3:-36532539 | MS.gene71215:CDS |
TCGCAGGCTTTGTTATTCCT+TGG | 0.407291 | 8.3:+36532741 | None:intergenic |
AAAATGTCAGGTCGCGGAAA+AGG | 0.432832 | 8.3:-36532824 | MS.gene71215:CDS |
GGAGGAAAGGGATTGGGAAA+AGG | 0.436575 | 8.3:-36532803 | MS.gene71215:CDS |
AGACAGGGGAGAACTCTTTA+CGG | 0.442868 | 8.3:-36532545 | MS.gene71215:CDS |
TGTTTATGCTTTGAAGAGAC+AGG | 0.461410 | 8.3:-36532561 | MS.gene71215:CDS |
GAGGAAAACCGTTACGGCTA+TGG | 0.462806 | 8.3:-36532588 | MS.gene71215:CDS |
GGAAAAGGAGGAAAGGGATT+GGG | 0.479340 | 8.3:-36532809 | MS.gene71215:CDS |
CGGAAAAGGAGGAAAGGGAT+TGG | 0.487643 | 8.3:-36532810 | MS.gene71215:CDS |
CGTCGTTTGGCTCGAAGAGG+AGG | 0.516708 | 8.3:-36532716 | MS.gene71215:CDS |
TTACTTACACTGAGCATGCT+AGG | 0.518049 | 8.3:-36532610 | MS.gene71215:CDS |
GGAAAGGGATTGGGAAAAGG+AGG | 0.526255 | 8.3:-36532800 | MS.gene71215:CDS |
TGCTAGGAGGAAAACCGTTA+CGG | 0.546899 | 8.3:-36532594 | MS.gene71215:CDS |
CGAGCCAAACGACGAATCGC+AGG | 0.562444 | 8.3:+36532725 | None:intergenic |
GGTCGCGGAAAAGGAGGAAA+GGG | 0.574670 | 8.3:-36532815 | MS.gene71215:CDS |
AGGAGCAAAGAGGCACAGAA+AGG | 0.576895 | 8.3:-36532780 | MS.gene71215:CDS |
ATGTCAGGTCGCGGAAAAGG+AGG | 0.578066 | 8.3:-36532821 | MS.gene71215:CDS |
GTTTATGCTTTGAAGAGACA+GGG | 0.590468 | 8.3:-36532560 | MS.gene71215:CDS |
GGAGGTGTGAAGAGAATCAG+TGG | 0.594114 | 8.3:-36532698 | MS.gene71215:CDS |
AGGTCGCGGAAAAGGAGGAA+AGG | 0.594714 | 8.3:-36532816 | MS.gene71215:CDS |
AACAACATCCATAGCCGTAA+CGG | 0.596499 | 8.3:+36532580 | None:intergenic |
AGAACTCTTTACGGTTTCGG+TGG | 0.599890 | 8.3:-36532536 | MS.gene71215:CDS |
ATTCGTCGTTTGGCTCGAAG+AGG | 0.614299 | 8.3:-36532719 | MS.gene71215:CDS |
GTTCTTCGTGACAACATCCA+AGG | 0.625870 | 8.3:-36532758 | MS.gene71215:CDS |
TTTATGCTTTGAAGAGACAG+GGG | 0.664122 | 8.3:-36532559 | MS.gene71215:CDS |
CTTATCTATGAAGAAACTCG+CGG | 0.683519 | 8.3:-36532674 | MS.gene71215:CDS |
CATCACGAATAACGTTCTCG+AGG | 0.697048 | 8.3:+36532636 | None:intergenic |
CTTACACTGAGCATGCTAGG+AGG | 0.700541 | 8.3:-36532607 | MS.gene71215:CDS |
TGGGAAAAGGAGGAGCAAAG+AGG | 0.707785 | 8.3:-36532790 | MS.gene71215:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
CTTATCTATGAAGAAACTCG+CGG | - | chr8.3:36532679-36532698 | MS.gene71215:CDS | 35.0% | |
!! | GTTTATGCTTTGAAGAGACA+GGG | - | chr8.3:36532793-36532812 | MS.gene71215:CDS | 35.0% |
!! | TGTTTATGCTTTGAAGAGAC+AGG | - | chr8.3:36532792-36532811 | MS.gene71215:CDS | 35.0% |
!! | TTTATGCTTTGAAGAGACAG+GGG | - | chr8.3:36532794-36532813 | MS.gene71215:CDS | 35.0% |
AACAACATCCATAGCCGTAA+CGG | + | chr8.3:36532776-36532795 | None:intergenic | 40.0% | |
TTACTTACACTGAGCATGCT+AGG | - | chr8.3:36532743-36532762 | MS.gene71215:CDS | 40.0% | |
AGAACTCTTTACGGTTTCGG+TGG | - | chr8.3:36532817-36532836 | MS.gene71215:CDS | 45.0% | |
AGACAGGGGAGAACTCTTTA+CGG | - | chr8.3:36532808-36532827 | MS.gene71215:CDS | 45.0% | |
CATCACGAATAACGTTCTCG+AGG | + | chr8.3:36532720-36532739 | None:intergenic | 45.0% | |
GGAAAAGGAGGAAAGGGATT+GGG | - | chr8.3:36532544-36532563 | MS.gene71215:CDS | 45.0% | |
GGGAGAACTCTTTACGGTTT+CGG | - | chr8.3:36532814-36532833 | MS.gene71215:CDS | 45.0% | |
GTTCTTCGTGACAACATCCA+AGG | - | chr8.3:36532595-36532614 | MS.gene71215:CDS | 45.0% | |
TGCTAGGAGGAAAACCGTTA+CGG | - | chr8.3:36532759-36532778 | MS.gene71215:CDS | 45.0% | |
!! | TCGCAGGCTTTGTTATTCCT+TGG | + | chr8.3:36532615-36532634 | None:intergenic | 45.0% |
AAAGCCTGCGATTCGTCGTT+TGG | - | chr8.3:36532624-36532643 | MS.gene71215:CDS | 50.0% | |
CGGAAAAGGAGGAAAGGGAT+TGG | - | chr8.3:36532543-36532562 | MS.gene71215:CDS | 50.0% | |
CTTACACTGAGCATGCTAGG+AGG | - | chr8.3:36532746-36532765 | MS.gene71215:CDS | 50.0% | |
GAGGAAAACCGTTACGGCTA+TGG | - | chr8.3:36532765-36532784 | MS.gene71215:CDS | 50.0% | |
GGAAAGGGATTGGGAAAAGG+AGG | - | chr8.3:36532553-36532572 | MS.gene71215:CDS | 50.0% | |
GGAGGAAAGGGATTGGGAAA+AGG | - | chr8.3:36532550-36532569 | MS.gene71215:CDS | 50.0% | |
TGGGAAAAGGAGGAGCAAAG+AGG | - | chr8.3:36532563-36532582 | MS.gene71215:CDS | 50.0% | |
! | AGGAGCAAAGAGGCACAGAA+AGG | - | chr8.3:36532573-36532592 | MS.gene71215:CDS | 50.0% |
! | ATTCGTCGTTTGGCTCGAAG+AGG | - | chr8.3:36532634-36532653 | MS.gene71215:CDS | 50.0% |
! | GGAGGTGTGAAGAGAATCAG+TGG | - | chr8.3:36532655-36532674 | MS.gene71215:CDS | 50.0% |
AGGTCGCGGAAAAGGAGGAA+AGG | - | chr8.3:36532537-36532556 | MS.gene71215:CDS | 55.0% | |
ATGTCAGGTCGCGGAAAAGG+AGG | - | chr8.3:36532532-36532551 | MS.gene71215:CDS | 55.0% | |
GGTCGCGGAAAAGGAGGAAA+GGG | - | chr8.3:36532538-36532557 | MS.gene71215:CDS | 55.0% | |
CGAGCCAAACGACGAATCGC+AGG | + | chr8.3:36532631-36532650 | None:intergenic | 60.0% | |
! | CGTCGTTTGGCTCGAAGAGG+AGG | - | chr8.3:36532637-36532656 | MS.gene71215:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 36532532 | 36532843 | 36532532 | ID=MS.gene71215 |
chr8.3 | mRNA | 36532532 | 36532843 | 36532532 | ID=MS.gene71215.t1;Parent=MS.gene71215 |
chr8.3 | exon | 36532532 | 36532843 | 36532532 | ID=MS.gene71215.t1.exon1;Parent=MS.gene71215.t1 |
chr8.3 | CDS | 36532532 | 36532843 | 36532532 | ID=cds.MS.gene71215.t1;Parent=MS.gene71215.t1 |
Gene Sequence |
Protein sequence |