Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21005.t1 | RHN80872.1 | 98.3 | 117 | 2 | 0 | 1 | 117 | 32 | 148 | 2.00E-58 | 235 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21005.t1 | B7FM98 | 98.3 | 117 | 2 | 0 | 1 | 117 | 1 | 117 | 1.4e-58 | 235.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene21005 | 0.801802 | 7.58E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene21005 | 0.855655 | 5.45E-62 | -1.69E-46 |
| MS.gene049369 | MS.gene21005 | 0.84855 | 5.71E-60 | -1.69E-46 |
| MS.gene049427 | MS.gene21005 | 0.805969 | 1.03E-49 | -1.69E-46 |
| MS.gene049491 | MS.gene21005 | 0.8141 | 1.83E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene21005 | 0.82781 | 1.27E-54 | -1.69E-46 |
| MS.gene049661 | MS.gene21005 | 0.813026 | 3.15E-51 | -1.69E-46 |
| MS.gene049662 | MS.gene21005 | 0.807349 | 5.28E-50 | -1.69E-46 |
| MS.gene049907 | MS.gene21005 | 0.835108 | 2.03E-56 | -1.69E-46 |
| MS.gene050301 | MS.gene21005 | 0.837291 | 5.67E-57 | -1.69E-46 |
| MS.gene050397 | MS.gene21005 | 0.815024 | 1.14E-51 | -1.69E-46 |
| MS.gene050432 | MS.gene21005 | 0.866827 | 2.15E-65 | -1.69E-46 |
| MS.gene050520 | MS.gene21005 | 0.854307 | 1.34E-61 | -1.69E-46 |
| MS.gene050593 | MS.gene21005 | 0.813343 | 2.69E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene21005 | 0.822595 | 2.18E-53 | -1.69E-46 |
| MS.gene050767 | MS.gene21005 | 0.825607 | 4.27E-54 | -1.69E-46 |
| MS.gene050770 | MS.gene21005 | 0.829001 | 6.57E-55 | -1.69E-46 |
| MS.gene050772 | MS.gene21005 | 0.840141 | 1.04E-57 | -1.69E-46 |
| MS.gene05101 | MS.gene21005 | 0.821656 | 3.60E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene21005 | 0.876666 | 1.16E-68 | -1.69E-46 |
| MS.gene051255 | MS.gene21005 | 0.880097 | 7.26E-70 | -1.69E-46 |
| MS.gene051360 | MS.gene21005 | 0.869109 | 3.96E-66 | -1.69E-46 |
| MS.gene051387 | MS.gene21005 | 0.822917 | 1.83E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene21005 | 0.804931 | 1.70E-49 | -1.69E-46 |
| MS.gene051692 | MS.gene21005 | 0.824303 | 8.69E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene21005 | 0.801629 | 8.23E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene21005 | 0.842337 | 2.75E-58 | -1.69E-46 |
| MS.gene052253 | MS.gene21005 | 0.833267 | 5.88E-56 | -1.69E-46 |
| MS.gene052271 | MS.gene21005 | 0.835639 | 1.49E-56 | -1.69E-46 |
| MS.gene052287 | MS.gene21005 | 0.812416 | 4.29E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene21005 | 0.838512 | 2.75E-57 | -1.69E-46 |
| MS.gene052322 | MS.gene21005 | 0.823723 | 1.19E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene21005 | 0.862258 | 5.76E-64 | -1.69E-46 |
| MS.gene052421 | MS.gene21005 | 0.825186 | 5.38E-54 | -1.69E-46 |
| MS.gene052481 | MS.gene21005 | 0.827438 | 1.56E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene21005 | 0.836062 | 1.17E-56 | -1.69E-46 |
| MS.gene052485 | MS.gene21005 | 0.851244 | 1.01E-60 | -1.69E-46 |
| MS.gene052508 | MS.gene21005 | 0.817375 | 3.41E-52 | -1.69E-46 |
| MS.gene052510 | MS.gene21005 | 0.810488 | 1.12E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene21005 | 0.814248 | 1.70E-51 | -1.69E-46 |
| MS.gene052870 | MS.gene21005 | 0.806312 | 8.74E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene21005 | 0.806684 | 7.30E-50 | -1.69E-46 |
| MS.gene052999 | MS.gene21005 | 0.821888 | 3.18E-53 | -1.69E-46 |
| MS.gene053009 | MS.gene21005 | 0.801863 | 7.37E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene21005 | 0.806083 | 9.77E-50 | -1.69E-46 |
| MS.gene053104 | MS.gene21005 | 0.80747 | 4.98E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene21005 | 0.838416 | 2.91E-57 | -1.69E-46 |
| MS.gene053209 | MS.gene21005 | 0.893193 | 7.89E-75 | -1.69E-46 |
| MS.gene053213 | MS.gene21005 | 0.802041 | 6.77E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene21005 | 0.827708 | 1.35E-54 | -1.69E-46 |
| MS.gene053557 | MS.gene21005 | 0.803862 | 2.85E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene21005 | 0.825403 | 4.78E-54 | -1.69E-46 |
| MS.gene053813 | MS.gene21005 | 0.847257 | 1.30E-59 | -1.69E-46 |
| MS.gene053912 | MS.gene21005 | 0.800878 | 1.17E-48 | -1.69E-46 |
| MS.gene053928 | MS.gene21005 | 0.806193 | 9.27E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene21005 | 0.832825 | 7.58E-56 | -1.69E-46 |
| MS.gene054556 | MS.gene21005 | 0.801269 | 9.75E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene21005 | 0.804475 | 2.12E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene21005 | 0.830567 | 2.73E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene21005 | 0.869026 | 4.21E-66 | -1.69E-46 |
| MS.gene055206 | MS.gene21005 | 0.810103 | 1.36E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene21005 | 0.846625 | 1.93E-59 | -1.69E-46 |
| MS.gene055412 | MS.gene21005 | 0.819864 | 9.29E-53 | -1.69E-46 |
| MS.gene055633 | MS.gene21005 | 0.814957 | 1.18E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene21005 | 0.831526 | 1.59E-55 | -1.69E-46 |
| MS.gene055666 | MS.gene21005 | 0.820128 | 8.08E-53 | -1.69E-46 |
| MS.gene055722 | MS.gene21005 | 0.867995 | 9.07E-66 | -1.69E-46 |
| MS.gene055802 | MS.gene21005 | 0.815289 | 9.98E-52 | -1.69E-46 |
| MS.gene055909 | MS.gene21005 | 0.808878 | 2.49E-50 | -1.69E-46 |
| MS.gene055911 | MS.gene21005 | 0.811743 | 6.01E-51 | -1.69E-46 |
| MS.gene05592 | MS.gene21005 | 0.832921 | 7.17E-56 | -1.69E-46 |
| MS.gene056191 | MS.gene21005 | 0.86488 | 8.84E-65 | -1.69E-46 |
| MS.gene056407 | MS.gene21005 | 0.811557 | 6.60E-51 | -1.69E-46 |
| MS.gene056410 | MS.gene21005 | 0.849907 | 2.39E-60 | -1.69E-46 |
| MS.gene056511 | MS.gene21005 | 0.840663 | 7.59E-58 | -1.69E-46 |
| MS.gene056609 | MS.gene21005 | 0.835143 | 1.99E-56 | -1.69E-46 |
| MS.gene056659 | MS.gene21005 | 0.815022 | 1.14E-51 | -1.69E-46 |
| MS.gene056796 | MS.gene21005 | 0.819746 | 9.88E-53 | -1.69E-46 |
| MS.gene056897 | MS.gene21005 | 0.824948 | 6.12E-54 | -1.69E-46 |
| MS.gene057011 | MS.gene21005 | 0.802842 | 4.63E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene21005 | 0.822713 | 2.04E-53 | -1.69E-46 |
| MS.gene057076 | MS.gene21005 | 0.828382 | 9.27E-55 | -1.69E-46 |
| MS.gene057124 | MS.gene21005 | 0.842389 | 2.66E-58 | -1.69E-46 |
| MS.gene057331 | MS.gene21005 | 0.861587 | 9.24E-64 | -1.69E-46 |
| MS.gene05733 | MS.gene21005 | 0.822346 | 2.49E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene21005 | 0.821586 | 3.73E-53 | -1.69E-46 |
| MS.gene057448 | MS.gene21005 | 0.821981 | 3.02E-53 | -1.69E-46 |
| MS.gene057449 | MS.gene21005 | 0.815345 | 9.70E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene21005 | 0.825058 | 5.76E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene21005 | 0.839483 | 1.54E-57 | -1.69E-46 |
| MS.gene057823 | MS.gene21005 | 0.841068 | 5.95E-58 | -1.69E-46 |
| MS.gene058002 | MS.gene21005 | 0.823501 | 1.34E-53 | -1.69E-46 |
| MS.gene058006 | MS.gene21005 | 0.801951 | 7.07E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene21005 | 0.816823 | 4.53E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene21005 | 0.800577 | 1.35E-48 | -1.69E-46 |
| MS.gene05806 | MS.gene21005 | 0.808506 | 2.99E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene21005 | 0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene21005 | 0.828477 | 8.80E-55 | -1.69E-46 |
| MS.gene058130 | MS.gene21005 | 0.801601 | 8.34E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene21005 | 0.819971 | 8.77E-53 | -1.69E-46 |
| MS.gene058365 | MS.gene21005 | 0.817241 | 3.65E-52 | -1.69E-46 |
| MS.gene05842 | MS.gene21005 | 0.807574 | 4.73E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene21005 | 0.819719 | 1.00E-52 | -1.69E-46 |
| MS.gene058700 | MS.gene21005 | 0.822013 | 2.97E-53 | -1.69E-46 |
| MS.gene05886 | MS.gene21005 | 0.806272 | 8.91E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene21005 | 0.818592 | 1.81E-52 | -1.69E-46 |
| MS.gene058948 | MS.gene21005 | 0.841213 | 5.44E-58 | -1.69E-46 |
| MS.gene05907 | MS.gene21005 | 0.825195 | 5.35E-54 | -1.69E-46 |
| MS.gene059129 | MS.gene21005 | 0.846505 | 2.08E-59 | -1.69E-46 |
| MS.gene059366 | MS.gene21005 | 0.827784 | 1.29E-54 | -1.69E-46 |
| MS.gene059420 | MS.gene21005 | 0.804667 | 1.94E-49 | -1.69E-46 |
| MS.gene059455 | MS.gene21005 | 0.811461 | 6.92E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene21005 | 0.807501 | 4.90E-50 | -1.69E-46 |
| MS.gene059674 | MS.gene21005 | 0.843653 | 1.23E-58 | -1.69E-46 |
| MS.gene059676 | MS.gene21005 | 0.855729 | 5.19E-62 | -1.69E-46 |
| MS.gene059680 | MS.gene21005 | 0.801332 | 9.46E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene21005 | 0.880912 | 3.71E-70 | -1.69E-46 |
| MS.gene059692 | MS.gene21005 | 0.891752 | 2.98E-74 | -1.69E-46 |
| MS.gene059695 | MS.gene21005 | 0.893426 | 6.35E-75 | -1.69E-46 |
| MS.gene059711 | MS.gene21005 | 0.871749 | 5.39E-67 | -1.69E-46 |
| MS.gene059807 | MS.gene21005 | 0.806837 | 6.77E-50 | -1.69E-46 |
| MS.gene05986 | MS.gene21005 | 0.820718 | 5.92E-53 | -1.69E-46 |
| MS.gene059894 | MS.gene21005 | 0.806427 | 8.27E-50 | -1.69E-46 |
| MS.gene059960 | MS.gene21005 | 0.8046 | 2.00E-49 | -1.69E-46 |
| MS.gene059974 | MS.gene21005 | 0.892538 | 1.45E-74 | -1.69E-46 |
| MS.gene060005 | MS.gene21005 | 0.808719 | 2.70E-50 | -1.69E-46 |
| MS.gene060356 | MS.gene21005 | 0.818812 | 1.61E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene21005 | 0.841145 | 5.67E-58 | -1.69E-46 |
| MS.gene060403 | MS.gene21005 | 0.819051 | 1.42E-52 | -1.69E-46 |
| MS.gene060469 | MS.gene21005 | 0.874711 | 5.45E-68 | -1.69E-46 |
| MS.gene060569 | MS.gene21005 | 0.838673 | 2.50E-57 | -1.69E-46 |
| MS.gene060804 | MS.gene21005 | 0.832779 | 7.78E-56 | -1.69E-46 |
| MS.gene060818 | MS.gene21005 | 0.815408 | 9.39E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene21005 | 0.825318 | 5.01E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene21005 | 0.887473 | 1.38E-72 | -1.69E-46 |
| MS.gene060986 | MS.gene21005 | 0.814709 | 1.34E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene21005 | 0.821411 | 4.09E-53 | -1.69E-46 |
| MS.gene061051 | MS.gene21005 | -0.822928 | 1.82E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene21005 | 0.839227 | 1.80E-57 | -1.69E-46 |
| MS.gene061200 | MS.gene21005 | 0.820569 | 6.40E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21005.t1 | MTR_1g084200 | 97.458 | 118 | 3 | 0 | 1 | 118 | 1 | 118 | 4.05e-82 | 238 |
| MS.gene21005.t1 | MTR_7g111900 | 68.254 | 126 | 37 | 1 | 1 | 123 | 1 | 126 | 7.57e-57 | 174 |
| MS.gene21005.t1 | MTR_7g103200 | 67.460 | 126 | 38 | 1 | 1 | 123 | 1 | 126 | 1.70e-56 | 172 |
| MS.gene21005.t1 | MTR_2g019480 | 49.533 | 107 | 54 | 0 | 11 | 117 | 15 | 121 | 1.21e-34 | 117 |
| MS.gene21005.t1 | MTR_2g046150 | 51.351 | 111 | 53 | 1 | 3 | 113 | 7 | 116 | 8.91e-34 | 115 |
| MS.gene21005.t1 | MTR_4g122930 | 53.636 | 110 | 49 | 1 | 1 | 110 | 1 | 108 | 3.33e-33 | 114 |
| MS.gene21005.t1 | MTR_2g091215 | 44.545 | 110 | 61 | 0 | 9 | 118 | 4 | 113 | 7.63e-21 | 82.0 |
| MS.gene21005.t1 | MTR_2g091210 | 39.048 | 105 | 64 | 0 | 14 | 118 | 9 | 113 | 8.97e-21 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21005.t1 | AT1G09310 | 65.323 | 124 | 43 | 0 | 1 | 124 | 1 | 124 | 3.04e-56 | 173 |
| MS.gene21005.t1 | AT1G56580 | 62.992 | 127 | 43 | 1 | 1 | 123 | 1 | 127 | 5.21e-55 | 169 |
| MS.gene21005.t1 | AT1G30020 | 47.959 | 98 | 51 | 0 | 13 | 110 | 15 | 112 | 6.73e-31 | 108 |
| MS.gene21005.t1 | AT5G49600 | 46.512 | 129 | 59 | 2 | 3 | 121 | 1 | 129 | 1.82e-30 | 107 |
| MS.gene21005.t1 | AT4G24130 | 43.103 | 116 | 63 | 1 | 9 | 121 | 13 | 128 | 6.81e-30 | 105 |
| MS.gene21005.t1 | AT5G46230 | 41.818 | 110 | 62 | 1 | 9 | 116 | 11 | 120 | 2.17e-29 | 103 |
Find 30 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTGTATACTTCTGATT+TGG | 0.290273 | 1.3:-59967743 | None:intergenic |
| GTTGATAGGCTTGTGACTTA+TGG | 0.360294 | 1.3:+59967925 | MS.gene21005:CDS |
| TAGAAGAATGTGGATATCAT+AGG | 0.386766 | 1.3:+59967845 | MS.gene21005:CDS |
| ACAAGTTTGAGAAAGTTGAT+AGG | 0.420157 | 1.3:+59967911 | MS.gene21005:CDS |
| GGTAAGATCAAGAAGCTAAC+TGG | 0.432806 | 1.3:+59967976 | MS.gene21005:CDS |
| TATTTCCAAGAGAAGTTCCT+TGG | 0.437882 | 1.3:-59967788 | None:intergenic |
| AGGTGAAGGAGCTCTTGGTT+TGG | 0.449978 | 1.3:+59968004 | MS.gene21005:CDS |
| AAAGTCCAAGGAACTTCTCT+TGG | 0.460248 | 1.3:+59967783 | MS.gene21005:CDS |
| GAAGTTCCTTGGACTTTGCT+TGG | 0.463735 | 1.3:-59967777 | None:intergenic |
| CAGTTGATGGATCATCCAAC+TGG | 0.469855 | 1.3:-59968044 | None:intergenic |
| CAGTTGGATGATCCATCAAC+TGG | 0.473384 | 1.3:+59968045 | MS.gene21005:CDS |
| TTCAAAGGCAAAAGACCATT+GGG | 0.479262 | 1.3:-59967817 | None:intergenic |
| TGATTTGGCTCTGATTTCAT+CGG | 0.482547 | 1.3:-59967728 | None:intergenic |
| TGTGAAGGTGAAGGAGCTCT+TGG | 0.487405 | 1.3:+59967999 | MS.gene21005:CDS |
| CTTCAAAGGCAAAAGACCAT+TGG | 0.510255 | 1.3:-59967818 | None:intergenic |
| CATTCTTCTATGTCCTTCAA+AGG | 0.523213 | 1.3:-59967832 | None:intergenic |
| TGTGGATATCATAGGGAGAG+TGG | 0.541120 | 1.3:+59967853 | MS.gene21005:CDS |
| TCCACTTCATGAAATCCAGT+TGG | 0.548501 | 1.3:+59968029 | MS.gene21005:CDS |
| AGAAGAATGTGGATATCATA+GGG | 0.557026 | 1.3:+59967846 | MS.gene21005:CDS |
| TCCAACTGGATTTCATGAAG+TGG | 0.564020 | 1.3:-59968030 | None:intergenic |
| CAAGAAGCTAACTGGTGTGA+AGG | 0.582814 | 1.3:+59967984 | MS.gene21005:CDS |
| GCTAACTGGTGTGAAGGTGA+AGG | 0.589102 | 1.3:+59967990 | MS.gene21005:CDS |
| AAGGCAAAAGACCATTGGGT+AGG | 0.596630 | 1.3:-59967813 | None:intergenic |
| GCCAAATCAGAAGTATACAA+TGG | 0.606422 | 1.3:+59967742 | MS.gene21005:CDS |
| TGAAGTTACTGCCACTGTTG+AGG | 0.621958 | 1.3:+59967951 | MS.gene21005:CDS |
| TTGAAGGACATAGAAGAATG+TGG | 0.627574 | 1.3:+59967835 | MS.gene21005:CDS |
| GTTACTGCCACTGTTGAGGT+TGG | 0.637022 | 1.3:+59967955 | MS.gene21005:CDS |
| TTGGAAATAAACCTACCCAA+TGG | 0.644432 | 1.3:+59967802 | MS.gene21005:CDS |
| AATCTGCCAAGCAAAGTCCA+AGG | 0.673023 | 1.3:+59967771 | MS.gene21005:CDS |
| GATCTTACCAACCTCAACAG+TGG | 0.683396 | 1.3:-59967962 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATATAATTAATTTCATTT+GGG | - | chr1.3:59968530-59968549 | None:intergenic | 10.0% |
| !! | ATTATAATTTCATATATTCT+TGG | - | chr1.3:59968411-59968430 | None:intergenic | 10.0% |
| !! | GAGATATAATTAATTTCATT+TGG | - | chr1.3:59968531-59968550 | None:intergenic | 15.0% |
| !! | TAATTCTACAAAAATAAACA+AGG | + | chr1.3:59968577-59968596 | MS.gene21005:intron | 15.0% |
| ! | ACATTCATTAGAAGAATGAA+AGG | + | chr1.3:59968619-59968638 | MS.gene21005:intron | 25.0% |
| ! | TCATTCTTCTAATGAATGTA+AGG | - | chr1.3:59968618-59968637 | None:intergenic | 25.0% |
| ! | TTTCATATACTTTCAGATTC+TGG | - | chr1.3:59968679-59968698 | None:intergenic | 25.0% |
| !! | AACATAACATAAGTAGCTTT+TGG | - | chr1.3:59968283-59968302 | None:intergenic | 25.0% |
| !! | GATGAGTTAAATAGCATTTT+AGG | - | chr1.3:59968761-59968780 | None:intergenic | 25.0% |
| !!! | GTGCTTTTATTTATTTCGTT+AGG | - | chr1.3:59968553-59968572 | None:intergenic | 25.0% |
| !!! | TGGTAATGGTAAATTATAAC+TGG | - | chr1.3:59968489-59968508 | None:intergenic | 25.0% |
| !!! | TTAAATAGCATTTTAGGTTC+CGG | - | chr1.3:59968755-59968774 | None:intergenic | 25.0% |
| AACTGGTAAAATCACATTCA+GGG | + | chr1.3:59968062-59968081 | MS.gene21005:intron | 30.0% | |
| AGAAGAATGTGGATATCATA+GGG | + | chr1.3:59967846-59967865 | MS.gene21005:CDS | 30.0% | |
| TAGAAGAATGTGGATATCAT+AGG | + | chr1.3:59967845-59967864 | MS.gene21005:CDS | 30.0% | |
| TCCATTGTATACTTCTGATT+TGG | - | chr1.3:59967746-59967765 | None:intergenic | 30.0% | |
| ! | AATGTGATTTTACCAGTTGA+TGG | - | chr1.3:59968060-59968079 | None:intergenic | 30.0% |
| ! | ACAAGTTTGAGAAAGTTGAT+AGG | + | chr1.3:59967911-59967930 | MS.gene21005:CDS | 30.0% |
| ! | ATAACAAACAAGCATTGTTG+TGG | - | chr1.3:59968338-59968357 | None:intergenic | 30.0% |
| !! | ATGCTTGTTTGTTATGTTTC+AGG | + | chr1.3:59968343-59968362 | MS.gene21005:intron | 30.0% |
| !! | TGCTTGTTTGTTATGTTTCA+GGG | + | chr1.3:59968344-59968363 | MS.gene21005:intron | 30.0% |
| CAACTGGTAAAATCACATTC+AGG | + | chr1.3:59968061-59968080 | MS.gene21005:intron | 35.0% | |
| CATTCTTCTATGTCCTTCAA+AGG | - | chr1.3:59967835-59967854 | None:intergenic | 35.0% | |
| CCATTCCAAGATACTTAATC+CGG | + | chr1.3:59968733-59968752 | MS.gene21005:intron | 35.0% | |
| CTTTGAACTTGTAGTTCTCA+TGG | - | chr1.3:59968835-59968854 | None:intergenic | 35.0% | |
| CTTTGATTATGCTGCTCTTA+TGG | + | chr1.3:59968368-59968387 | MS.gene21005:intron | 35.0% | |
| TATTTCCAAGAGAAGTTCCT+TGG | - | chr1.3:59967791-59967810 | None:intergenic | 35.0% | |
| TGAGATAGAAGGAGAAGTTA+AGG | + | chr1.3:59968125-59968144 | MS.gene21005:intron | 35.0% | |
| TGAGTATCATAGCATGGTAA+TGG | - | chr1.3:59968503-59968522 | None:intergenic | 35.0% | |
| TTCAAAGGCAAAAGACCATT+GGG | - | chr1.3:59967820-59967839 | None:intergenic | 35.0% | |
| TTGAAGGACATAGAAGAATG+TGG | + | chr1.3:59967835-59967854 | MS.gene21005:CDS | 35.0% | |
| TTGGAAATAAACCTACCCAA+TGG | + | chr1.3:59967802-59967821 | MS.gene21005:CDS | 35.0% | |
| ! | CGCAAACTTTCTGTATGTTT+TGG | - | chr1.3:59968879-59968898 | None:intergenic | 35.0% |
| ! | GCCAAATCAGAAGTATACAA+TGG | + | chr1.3:59967742-59967761 | MS.gene21005:CDS | 35.0% |
| ! | GTATCTTGGAATGGATTTGA+AGG | - | chr1.3:59968727-59968746 | None:intergenic | 35.0% |
| !! | ATGAAATGCAAGTTCTGAGA+AGG | + | chr1.3:59968693-59968712 | MS.gene21005:intron | 35.0% |
| !! | TGATTTGGCTCTGATTTCAT+CGG | - | chr1.3:59967731-59967750 | None:intergenic | 35.0% |
| AAAGTCCAAGGAACTTCTCT+TGG | + | chr1.3:59967783-59967802 | MS.gene21005:CDS | 40.0% | |
| AGGAGAAGTTAAGGATGTGA+AGG | + | chr1.3:59968134-59968153 | MS.gene21005:intron | 40.0% | |
| AGGTTCCGGATTAAGTATCT+TGG | - | chr1.3:59968741-59968760 | None:intergenic | 40.0% | |
| ATCACATTCAGGGCTATTAC+AGG | + | chr1.3:59968072-59968091 | MS.gene21005:intron | 40.0% | |
| CCGGATTAAGTATCTTGGAA+TGG | - | chr1.3:59968736-59968755 | None:intergenic | 40.0% | |
| CTTCAAAGGCAAAAGACCAT+TGG | - | chr1.3:59967821-59967840 | None:intergenic | 40.0% | |
| GAAAGCAGCAAGAGATTGAA+GGG | - | chr1.3:59968912-59968931 | None:intergenic | 40.0% | |
| GGATCATGAGTATCATAGCA+TGG | - | chr1.3:59968509-59968528 | None:intergenic | 40.0% | |
| GGTAAGATCAAGAAGCTAAC+TGG | + | chr1.3:59967976-59967995 | MS.gene21005:CDS | 40.0% | |
| TCCAACTGGATTTCATGAAG+TGG | - | chr1.3:59968033-59968052 | None:intergenic | 40.0% | |
| TCCACTTCATGAAATCCAGT+TGG | + | chr1.3:59968029-59968048 | MS.gene21005:CDS | 40.0% | |
| TCCTTCTATCTCAAAAGCTG+AGG | - | chr1.3:59968118-59968137 | None:intergenic | 40.0% | |
| TGAAAGCAGCAAGAGATTGA+AGG | - | chr1.3:59968913-59968932 | None:intergenic | 40.0% | |
| ! | CAATGGTCTTTTGCCTTTGA+AGG | + | chr1.3:59967819-59967838 | MS.gene21005:CDS | 40.0% |
| ! | GTTGATAGGCTTGTGACTTA+TGG | + | chr1.3:59967925-59967944 | MS.gene21005:CDS | 40.0% |
| ! | TCTTGGAATGGATTTGAAGG+TGG | - | chr1.3:59968724-59968743 | None:intergenic | 40.0% |
| !! | AATGCAAGTTCTGAGAAGGT+AGG | + | chr1.3:59968697-59968716 | MS.gene21005:intron | 40.0% |
| !!! | ATAGGGAGAGTGGTTTTGTA+TGG | + | chr1.3:59967863-59967882 | MS.gene21005:CDS | 40.0% |
| AAGGCAAAAGACCATTGGGT+AGG | - | chr1.3:59967816-59967835 | None:intergenic | 45.0% | |
| AATCTGCCAAGCAAAGTCCA+AGG | + | chr1.3:59967771-59967790 | MS.gene21005:CDS | 45.0% | |
| CAAGAAGCTAACTGGTGTGA+AGG | + | chr1.3:59967984-59968003 | MS.gene21005:CDS | 45.0% | |
| CAGTTGGATGATCCATCAAC+TGG | + | chr1.3:59968045-59968064 | MS.gene21005:CDS | 45.0% | |
| CATTGTTGTGGAGCGAGAAA+CGG | - | chr1.3:59968326-59968345 | None:intergenic | 45.0% | |
| CTATCTCAAAAGCTGAGGCT+GGG | - | chr1.3:59968113-59968132 | None:intergenic | 45.0% | |
| GAAGTTCCTTGGACTTTGCT+TGG | - | chr1.3:59967780-59967799 | None:intergenic | 45.0% | |
| GATCTTACCAACCTCAACAG+TGG | - | chr1.3:59967965-59967984 | None:intergenic | 45.0% | |
| TCTATCTCAAAAGCTGAGGC+TGG | - | chr1.3:59968114-59968133 | None:intergenic | 45.0% | |
| TGAAGTTACTGCCACTGTTG+AGG | + | chr1.3:59967951-59967970 | MS.gene21005:CDS | 45.0% | |
| TGCTGCTGTTGAAGTCAAAG+AGG | + | chr1.3:59968206-59968225 | MS.gene21005:intron | 45.0% | |
| TGTGGATATCATAGGGAGAG+TGG | + | chr1.3:59967853-59967872 | MS.gene21005:CDS | 45.0% | |
| !! | CAGTTGATGGATCATCCAAC+TGG | - | chr1.3:59968047-59968066 | None:intergenic | 45.0% |
| !!! | GCCTCAGCTTTTGAGATAGA+AGG | + | chr1.3:59968114-59968133 | MS.gene21005:intron | 45.0% |
| AGGTGAAGGAGCTCTTGGTT+TGG | + | chr1.3:59968004-59968023 | MS.gene21005:CDS | 50.0% | |
| GCTAACTGGTGTGAAGGTGA+AGG | + | chr1.3:59967990-59968009 | MS.gene21005:CDS | 50.0% | |
| GTTACTGCCACTGTTGAGGT+TGG | + | chr1.3:59967955-59967974 | MS.gene21005:CDS | 50.0% | |
| TGTGAAGGTGAAGGAGCTCT+TGG | + | chr1.3:59967999-59968018 | MS.gene21005:CDS | 50.0% | |
| TTGTGGAGCGAGAAACGGAA+AGG | - | chr1.3:59968321-59968340 | None:intergenic | 50.0% | |
| ACAGCAGCAGCAGTAGCAGC+AGG | - | chr1.3:59968195-59968214 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 59967715 | 59968965 | 59967715 | ID=MS.gene21005 |
| chr1.3 | mRNA | 59967715 | 59968965 | 59967715 | ID=MS.gene21005.t1;Parent=MS.gene21005 |
| chr1.3 | exon | 59967715 | 59968066 | 59967715 | ID=MS.gene21005.t1.exon1;Parent=MS.gene21005.t1 |
| chr1.3 | CDS | 59967715 | 59968066 | 59967715 | ID=cds.MS.gene21005.t1;Parent=MS.gene21005.t1 |
| chr1.3 | exon | 59968934 | 59968965 | 59968934 | ID=MS.gene21005.t1.exon2;Parent=MS.gene21005.t1 |
| chr1.3 | CDS | 59968934 | 59968965 | 59968934 | ID=cds.MS.gene21005.t1;Parent=MS.gene21005.t1 |
| Gene Sequence |
| Protein sequence |
