Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21534.t1 | XP_003611371.1 | 97.2 | 431 | 12 | 0 | 1 | 431 | 1 | 431 | 1.10E-241 | 845.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21534.t1 | O81816 | 33.9 | 401 | 248 | 4 | 42 | 429 | 9 | 405 | 8.6e-62 | 239.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21534.t1 | G7JXH2 | 97.2 | 431 | 12 | 0 | 1 | 431 | 1 | 431 | 7.8e-242 | 845.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene21534 | 0.801981 | 6.97E-49 | -1.69E-46 |
| MS.gene049170 | MS.gene21534 | 0.809419 | 1.91E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene21534 | 0.879856 | 8.85E-70 | -1.69E-46 |
| MS.gene049369 | MS.gene21534 | 0.890485 | 9.44E-74 | -1.69E-46 |
| MS.gene049396 | MS.gene21534 | 0.892632 | 1.33E-74 | -1.69E-46 |
| MS.gene049609 | MS.gene21534 | 0.846687 | 1.86E-59 | -1.69E-46 |
| MS.gene049805 | MS.gene21534 | 0.848659 | 5.32E-60 | -1.69E-46 |
| MS.gene050060 | MS.gene21534 | 0.810794 | 9.65E-51 | -1.69E-46 |
| MS.gene050400 | MS.gene21534 | 0.807684 | 4.48E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene21534 | -0.802498 | 5.45E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene21534 | 0.806537 | 7.84E-50 | -1.69E-46 |
| MS.gene050553 | MS.gene21534 | 0.81679 | 4.61E-52 | -1.69E-46 |
| MS.gene050593 | MS.gene21534 | 0.867699 | 1.13E-65 | -1.69E-46 |
| MS.gene050670 | MS.gene21534 | 0.886099 | 4.59E-72 | -1.69E-46 |
| MS.gene050686 | MS.gene21534 | 0.800607 | 1.33E-48 | -1.69E-46 |
| MS.gene050747 | MS.gene21534 | 0.831179 | 1.93E-55 | -1.69E-46 |
| MS.gene050772 | MS.gene21534 | 0.850878 | 1.28E-60 | -1.69E-46 |
| MS.gene050809 | MS.gene21534 | -0.809445 | 1.89E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene21534 | 0.820338 | 7.23E-53 | -1.69E-46 |
| MS.gene050812 | MS.gene21534 | 0.801812 | 7.55E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene21534 | 0.820216 | 7.71E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene21534 | 0.824389 | 8.29E-54 | -1.69E-46 |
| MS.gene050971 | MS.gene21534 | 0.838596 | 2.62E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene21534 | 0.882485 | 1.00E-70 | -1.69E-46 |
| MS.gene051360 | MS.gene21534 | 0.83065 | 2.61E-55 | -1.69E-46 |
| MS.gene051387 | MS.gene21534 | 0.82248 | 2.32E-53 | -1.69E-46 |
| MS.gene051521 | MS.gene21534 | 0.810871 | 9.29E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene21534 | 0.838905 | 2.18E-57 | -1.69E-46 |
| MS.gene051605 | MS.gene21534 | 0.820515 | 6.59E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene21534 | 0.835619 | 1.51E-56 | -1.69E-46 |
| MS.gene051692 | MS.gene21534 | 0.804898 | 1.73E-49 | -1.69E-46 |
| MS.gene051734 | MS.gene21534 | 0.844608 | 6.80E-59 | -1.69E-46 |
| MS.gene051838 | MS.gene21534 | 0.840783 | 7.06E-58 | -1.69E-46 |
| MS.gene051858 | MS.gene21534 | 0.804932 | 1.70E-49 | -1.69E-46 |
| MS.gene051874 | MS.gene21534 | 0.845746 | 3.35E-59 | -1.69E-46 |
| MS.gene052077 | MS.gene21534 | 0.800645 | 1.31E-48 | -1.69E-46 |
| MS.gene052134 | MS.gene21534 | 0.846562 | 2.01E-59 | -1.69E-46 |
| MS.gene052135 | MS.gene21534 | 0.846802 | 1.73E-59 | -1.69E-46 |
| MS.gene052136 | MS.gene21534 | 0.860812 | 1.59E-63 | -1.69E-46 |
| MS.gene052188 | MS.gene21534 | 0.872499 | 3.03E-67 | -1.69E-46 |
| MS.gene052253 | MS.gene21534 | 0.833567 | 4.95E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene21534 | 0.845245 | 4.58E-59 | -1.69E-46 |
| MS.gene052340 | MS.gene21534 | 0.854797 | 9.69E-62 | -1.69E-46 |
| MS.gene052346 | MS.gene21534 | 0.849312 | 3.51E-60 | -1.69E-46 |
| MS.gene05240 | MS.gene21534 | -0.810318 | 1.22E-50 | -1.69E-46 |
| MS.gene052414 | MS.gene21534 | 0.894182 | 3.14E-75 | -1.69E-46 |
| MS.gene052421 | MS.gene21534 | 0.863581 | 2.25E-64 | -1.69E-46 |
| MS.gene052481 | MS.gene21534 | 0.828743 | 7.59E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene21534 | 0.831247 | 1.86E-55 | -1.69E-46 |
| MS.gene052485 | MS.gene21534 | 0.836507 | 8.99E-57 | -1.69E-46 |
| MS.gene052501 | MS.gene21534 | 0.818649 | 1.76E-52 | -1.69E-46 |
| MS.gene052505 | MS.gene21534 | 0.825174 | 5.41E-54 | -1.69E-46 |
| MS.gene052784 | MS.gene21534 | 0.805049 | 1.61E-49 | -1.69E-46 |
| MS.gene052870 | MS.gene21534 | 0.8167 | 4.83E-52 | -1.69E-46 |
| MS.gene052872 | MS.gene21534 | 0.809642 | 1.71E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene21534 | 0.81767 | 2.92E-52 | -1.69E-46 |
| MS.gene052999 | MS.gene21534 | 0.810976 | 8.82E-51 | -1.69E-46 |
| MS.gene053103 | MS.gene21534 | 0.825374 | 4.85E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene21534 | 0.828511 | 8.63E-55 | -1.69E-46 |
| MS.gene053169 | MS.gene21534 | 0.808594 | 2.87E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene21534 | 0.80522 | 1.48E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene21534 | 0.814138 | 1.79E-51 | -1.69E-46 |
| MS.gene053449 | MS.gene21534 | 0.895967 | 5.79E-76 | -1.69E-46 |
| MS.gene053557 | MS.gene21534 | 0.811923 | 5.49E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene21534 | 0.854898 | 9.06E-62 | -1.69E-46 |
| MS.gene053626 | MS.gene21534 | 0.80184 | 7.45E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene21534 | 0.850412 | 1.73E-60 | -1.69E-46 |
| MS.gene053813 | MS.gene21534 | 0.802331 | 5.90E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene21534 | 0.831866 | 1.31E-55 | -1.69E-46 |
| MS.gene053912 | MS.gene21534 | 0.8956 | 8.22E-76 | -1.69E-46 |
| MS.gene053916 | MS.gene21534 | 0.840671 | 7.56E-58 | -1.69E-46 |
| MS.gene054349 | MS.gene21534 | 0.82378 | 1.15E-53 | -1.69E-46 |
| MS.gene054556 | MS.gene21534 | 0.806697 | 7.25E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene21534 | 0.856069 | 4.13E-62 | -1.69E-46 |
| MS.gene054955 | MS.gene21534 | 0.811052 | 8.49E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene21534 | 0.874981 | 4.41E-68 | -1.69E-46 |
| MS.gene055116 | MS.gene21534 | 0.86583 | 4.44E-65 | -1.69E-46 |
| MS.gene055206 | MS.gene21534 | 0.804608 | 1.99E-49 | -1.69E-46 |
| MS.gene055224 | MS.gene21534 | 0.845841 | 3.16E-59 | -1.69E-46 |
| MS.gene055289 | MS.gene21534 | 0.834171 | 3.50E-56 | -1.69E-46 |
| MS.gene055369 | MS.gene21534 | 0.812468 | 4.18E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene21534 | 0.830955 | 2.19E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene21534 | 0.805125 | 1.55E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene21534 | 0.849403 | 3.31E-60 | -1.69E-46 |
| MS.gene055741 | MS.gene21534 | 0.862996 | 3.41E-64 | -1.69E-46 |
| MS.gene055744 | MS.gene21534 | 0.867592 | 1.22E-65 | -1.69E-46 |
| MS.gene055909 | MS.gene21534 | 0.855588 | 5.70E-62 | -1.69E-46 |
| MS.gene055911 | MS.gene21534 | 0.851566 | 8.16E-61 | -1.69E-46 |
| MS.gene05592 | MS.gene21534 | 0.83321 | 6.08E-56 | -1.69E-46 |
| MS.gene055941 | MS.gene21534 | 0.807065 | 6.06E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene21534 | 0.848346 | 6.50E-60 | -1.69E-46 |
| MS.gene056422 | MS.gene21534 | 0.883789 | 3.33E-71 | -1.69E-46 |
| MS.gene056448 | MS.gene21534 | 0.812738 | 3.64E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene21534 | 0.912384 | 2.07E-83 | -1.69E-46 |
| MS.gene056609 | MS.gene21534 | 0.810624 | 1.05E-50 | -1.69E-46 |
| MS.gene05664 | MS.gene21534 | 0.825424 | 4.72E-54 | -1.69E-46 |
| MS.gene05666 | MS.gene21534 | 0.814452 | 1.53E-51 | -1.69E-46 |
| MS.gene056719 | MS.gene21534 | 0.802801 | 4.72E-49 | -1.69E-46 |
| MS.gene056897 | MS.gene21534 | 0.810834 | 9.46E-51 | -1.69E-46 |
| MS.gene057019 | MS.gene21534 | 0.826611 | 2.47E-54 | -1.69E-46 |
| MS.gene057076 | MS.gene21534 | 0.858242 | 9.42E-63 | -1.69E-46 |
| MS.gene057086 | MS.gene21534 | 0.821325 | 4.29E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene21534 | 0.854938 | 8.82E-62 | -1.69E-46 |
| MS.gene057146 | MS.gene21534 | 0.807496 | 4.91E-50 | -1.69E-46 |
| MS.gene057310 | MS.gene21534 | 0.800953 | 1.13E-48 | -1.69E-46 |
| MS.gene057331 | MS.gene21534 | 0.828763 | 7.50E-55 | -1.69E-46 |
| MS.gene05735 | MS.gene21534 | 0.817111 | 3.91E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene21534 | 0.824764 | 6.76E-54 | -1.69E-46 |
| MS.gene057416 | MS.gene21534 | 0.816227 | 6.16E-52 | -1.69E-46 |
| MS.gene057448 | MS.gene21534 | 0.82756 | 1.46E-54 | -1.69E-46 |
| MS.gene057449 | MS.gene21534 | 0.819992 | 8.68E-53 | -1.69E-46 |
| MS.gene057450 | MS.gene21534 | 0.825942 | 3.56E-54 | -1.69E-46 |
| MS.gene057537 | MS.gene21534 | 0.827084 | 1.90E-54 | -1.69E-46 |
| MS.gene057734 | MS.gene21534 | 0.88343 | 4.52E-71 | -1.69E-46 |
| MS.gene057749 | MS.gene21534 | 0.816339 | 5.82E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene21534 | 0.829342 | 5.43E-55 | -1.69E-46 |
| MS.gene057856 | MS.gene21534 | 0.846851 | 1.68E-59 | -1.69E-46 |
| MS.gene057926 | MS.gene21534 | 0.80493 | 1.70E-49 | -1.69E-46 |
| MS.gene057927 | MS.gene21534 | 0.818676 | 1.73E-52 | -1.69E-46 |
| MS.gene058007 | MS.gene21534 | 0.8638 | 1.92E-64 | -1.69E-46 |
| MS.gene058075 | MS.gene21534 | 0.816 | 6.93E-52 | -1.69E-46 |
| MS.gene058120 | MS.gene21534 | 0.864101 | 1.55E-64 | -1.69E-46 |
| MS.gene058130 | MS.gene21534 | 0.816948 | 4.25E-52 | -1.69E-46 |
| MS.gene058376 | MS.gene21534 | 0.839446 | 1.58E-57 | -1.69E-46 |
| MS.gene05837 | MS.gene21534 | 0.801561 | 8.50E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene21534 | 0.840679 | 7.52E-58 | -1.69E-46 |
| MS.gene058459 | MS.gene21534 | 0.825677 | 4.12E-54 | -1.69E-46 |
| MS.gene058700 | MS.gene21534 | 0.867484 | 1.32E-65 | -1.69E-46 |
| MS.gene058838 | MS.gene21534 | 0.817413 | 3.34E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene21534 | 0.873189 | 1.78E-67 | -1.69E-46 |
| MS.gene058948 | MS.gene21534 | 0.831259 | 1.85E-55 | -1.69E-46 |
| MS.gene05907 | MS.gene21534 | 0.804091 | 2.55E-49 | -1.69E-46 |
| MS.gene05913 | MS.gene21534 | 0.830041 | 3.67E-55 | -1.69E-46 |
| MS.gene059294 | MS.gene21534 | 0.800072 | 1.71E-48 | -1.69E-46 |
| MS.gene059305 | MS.gene21534 | 0.831 | 2.14E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene21534 | 0.822527 | 2.26E-53 | -1.69E-46 |
| MS.gene059366 | MS.gene21534 | 0.882431 | 1.05E-70 | -1.69E-46 |
| MS.gene059368 | MS.gene21534 | 0.823259 | 1.53E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene21534 | 0.834721 | 2.54E-56 | -1.69E-46 |
| MS.gene059455 | MS.gene21534 | 0.839178 | 1.85E-57 | -1.69E-46 |
| MS.gene059536 | MS.gene21534 | 0.817366 | 3.42E-52 | -1.69E-46 |
| MS.gene059667 | MS.gene21534 | 0.817541 | 3.13E-52 | -1.69E-46 |
| MS.gene059674 | MS.gene21534 | 0.857507 | 1.56E-62 | -1.69E-46 |
| MS.gene059676 | MS.gene21534 | 0.821745 | 3.43E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene21534 | 0.880997 | 3.46E-70 | -1.69E-46 |
| MS.gene059692 | MS.gene21534 | 0.85697 | 2.24E-62 | -1.69E-46 |
| MS.gene059695 | MS.gene21534 | 0.859045 | 5.42E-63 | -1.69E-46 |
| MS.gene059711 | MS.gene21534 | 0.844216 | 8.67E-59 | -1.69E-46 |
| MS.gene059807 | MS.gene21534 | 0.91871 | 1.11E-86 | -1.69E-46 |
| MS.gene059933 | MS.gene21534 | 0.80198 | 6.97E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene21534 | 0.85401 | 1.64E-61 | -1.69E-46 |
| MS.gene060403 | MS.gene21534 | 0.85009 | 2.13E-60 | -1.69E-46 |
| MS.gene060804 | MS.gene21534 | 0.839993 | 1.14E-57 | -1.69E-46 |
| MS.gene060818 | MS.gene21534 | 0.853929 | 1.73E-61 | -1.69E-46 |
| MS.gene060835 | MS.gene21534 | 0.868216 | 7.70E-66 | -1.69E-46 |
| MS.gene060837 | MS.gene21534 | 0.893454 | 6.19E-75 | -1.69E-46 |
| MS.gene06097 | MS.gene21534 | 0.864204 | 1.44E-64 | -1.69E-46 |
| MS.gene060981 | MS.gene21534 | 0.807416 | 5.11E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene21534 | 0.849373 | 3.37E-60 | -1.69E-46 |
| MS.gene061051 | MS.gene21534 | -0.817312 | 3.52E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene21534 | 0.881738 | 1.87E-70 | -1.69E-46 |
| MS.gene061159 | MS.gene21534 | 0.801599 | 8.34E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21534.t1 | MTR_5g013250 | 97.216 | 431 | 12 | 0 | 1 | 431 | 1 | 431 | 0.0 | 865 |
| MS.gene21534.t1 | MTR_5g013260 | 85.421 | 439 | 54 | 5 | 3 | 431 | 1 | 439 | 0.0 | 746 |
| MS.gene21534.t1 | MTR_1g112780 | 41.013 | 395 | 221 | 6 | 38 | 424 | 8 | 398 | 5.72e-90 | 290 |
| MS.gene21534.t1 | MTR_1g112780 | 38.250 | 400 | 229 | 6 | 46 | 430 | 401 | 797 | 2.98e-72 | 242 |
| MS.gene21534.t1 | MTR_1g112740 | 39.500 | 400 | 231 | 5 | 39 | 430 | 2 | 398 | 5.21e-82 | 258 |
| MS.gene21534.t1 | MTR_1g090667 | 38.424 | 406 | 235 | 6 | 37 | 430 | 4 | 406 | 1.70e-79 | 251 |
| MS.gene21534.t1 | MTR_1g112750 | 35.627 | 407 | 247 | 7 | 36 | 430 | 3 | 406 | 1.15e-65 | 216 |
| MS.gene21534.t1 | MTR_4g035655 | 32.737 | 391 | 246 | 6 | 22 | 400 | 464 | 849 | 6.02e-58 | 204 |
| MS.gene21534.t1 | MTR_4g035655 | 32.565 | 347 | 216 | 7 | 34 | 368 | 2 | 342 | 2.02e-50 | 183 |
| MS.gene21534.t1 | MTR_4g022850 | 30.081 | 246 | 157 | 9 | 139 | 379 | 166 | 401 | 4.98e-22 | 98.2 |
| MS.gene21534.t1 | MTR_4g022850 | 30.081 | 246 | 157 | 9 | 139 | 379 | 166 | 401 | 5.63e-22 | 98.2 |
| MS.gene21534.t1 | MTR_4g022850 | 30.081 | 246 | 157 | 9 | 139 | 379 | 166 | 401 | 5.83e-22 | 98.2 |
| MS.gene21534.t1 | MTR_5g017350 | 27.222 | 360 | 229 | 15 | 42 | 379 | 78 | 426 | 1.95e-21 | 97.1 |
| MS.gene21534.t1 | MTR_5g017350 | 27.222 | 360 | 229 | 15 | 42 | 379 | 78 | 426 | 2.71e-21 | 96.7 |
| MS.gene21534.t1 | MTR_5g017350 | 27.500 | 360 | 228 | 15 | 42 | 379 | 78 | 426 | 3.34e-21 | 96.7 |
| MS.gene21534.t1 | MTR_5g017350 | 27.500 | 360 | 228 | 15 | 42 | 379 | 78 | 426 | 3.56e-21 | 96.7 |
| MS.gene21534.t1 | MTR_4g022850 | 32.000 | 150 | 95 | 4 | 245 | 393 | 159 | 302 | 6.38e-15 | 76.3 |
| MS.gene21534.t1 | MTR_1g011690 | 23.797 | 395 | 246 | 12 | 38 | 394 | 6 | 383 | 8.68e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21534.t1 | AT2G35660 | 73.724 | 392 | 103 | 0 | 38 | 429 | 43 | 434 | 0.0 | 622 |
| MS.gene21534.t1 | AT2G29720 | 66.387 | 357 | 120 | 0 | 52 | 408 | 55 | 411 | 0.0 | 519 |
| MS.gene21534.t1 | AT2G35660 | 73.125 | 320 | 86 | 0 | 110 | 429 | 1 | 320 | 0.0 | 510 |
| MS.gene21534.t1 | AT2G35660 | 73.125 | 320 | 86 | 0 | 110 | 429 | 1 | 320 | 0.0 | 510 |
| MS.gene21534.t1 | AT5G05320 | 34.877 | 367 | 224 | 3 | 40 | 394 | 7 | 370 | 9.07e-76 | 242 |
| MS.gene21534.t1 | AT4G38540 | 33.915 | 401 | 248 | 4 | 42 | 429 | 9 | 405 | 3.01e-71 | 230 |
| MS.gene21534.t1 | AT4G15760 | 33.058 | 363 | 213 | 11 | 50 | 394 | 39 | 389 | 9.35e-50 | 174 |
| MS.gene21534.t1 | AT4G15760 | 32.075 | 371 | 218 | 10 | 50 | 394 | 39 | 401 | 7.08e-49 | 172 |
| MS.gene21534.t1 | AT4G15765 | 26.910 | 301 | 170 | 5 | 42 | 335 | 6 | 263 | 2.84e-24 | 102 |
| MS.gene21534.t1 | AT5G67030 | 27.434 | 339 | 212 | 14 | 38 | 356 | 79 | 403 | 7.89e-23 | 101 |
| MS.gene21534.t1 | AT5G67030 | 27.729 | 339 | 211 | 14 | 38 | 356 | 79 | 403 | 8.42e-23 | 101 |
| MS.gene21534.t1 | AT5G11330 | 23.018 | 391 | 253 | 10 | 38 | 394 | 4 | 380 | 6.50e-12 | 67.4 |
Find 131 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATACCTTATTGGAATTCT+TGG | 0.212200 | 5.3:-6211061 | MS.gene21534:CDS |
| AGATTGAGCCTTGATTAATT+TGG | 0.234422 | 5.3:+6212123 | None:intergenic |
| ATGTCTAAACAGATTGTAAT+AGG | 0.240740 | 5.3:-6210750 | MS.gene21534:intron |
| CGATTACAACATGTTCCTTT+TGG | 0.248040 | 5.3:+6212095 | None:intergenic |
| TCCAAATGGGGATACCTTAT+TGG | 0.254372 | 5.3:-6211070 | MS.gene21534:CDS |
| TGCCCAAGATTTGGAGTCAT+TGG | 0.307226 | 5.3:+6210227 | None:intergenic |
| CATGCTCCTTGCCCAAGATT+TGG | 0.307845 | 5.3:+6210218 | None:intergenic |
| TTCATTATGTTTAGTAGCTC+TGG | 0.317013 | 5.3:+6210365 | None:intergenic |
| ATCCTCTTCTTTGAAATTGA+AGG | 0.328744 | 5.3:+6211662 | None:intergenic |
| TAGACTTTGGTTGGAGAAAC+AGG | 0.332821 | 5.3:+6210564 | None:intergenic |
| CACCCAATGACTCCAAATCT+TGG | 0.340691 | 5.3:-6210230 | MS.gene21534:CDS |
| AGTGGAGAGGAGGGTACTTT+TGG | 0.353165 | 5.3:-6211163 | MS.gene21534:CDS |
| CCAACTTGTCATACCAGAAT+TGG | 0.356587 | 5.3:-6212160 | MS.gene21534:CDS |
| TCCAATAAGGTATCCCCATT+TGG | 0.359215 | 5.3:+6211069 | None:intergenic |
| ATCGTGGGTGGTGGCATTGC+AGG | 0.363319 | 5.3:-6212076 | MS.gene21534:CDS |
| TCTCCACTGCACGCACCTCT+TGG | 0.364886 | 5.3:+6211178 | None:intergenic |
| GCCCAAGATTTGGAGTCATT+GGG | 0.380043 | 5.3:+6210228 | None:intergenic |
| CCCATCCAAGAATTCCAATA+AGG | 0.383303 | 5.3:+6211056 | None:intergenic |
| CTAAGGATCTAGTGGAAAAC+TGG | 0.384760 | 5.3:-6210391 | MS.gene21534:CDS |
| GTGAATTACATCTACGGAAA+AGG | 0.386225 | 5.3:-6210606 | MS.gene21534:CDS |
| ACTTCTGAGAGCTCCAATTC+TGG | 0.395076 | 5.3:+6212147 | None:intergenic |
| AGTAAGGCTTGGTCCATTGC+TGG | 0.401844 | 5.3:-6209979 | MS.gene21534:CDS |
| TGGTGTTCGGTCTCTTGTGC+TGG | 0.403207 | 5.3:-6211942 | MS.gene21534:CDS |
| GAATTCTCAGGCTTGGTGTT+CGG | 0.408757 | 5.3:-6211955 | MS.gene21534:intron |
| GAAGAATATTGAATGCTATC+AGG | 0.408814 | 5.3:+6211117 | None:intergenic |
| ATAGCATTCAATATTCTTCA+CGG | 0.412492 | 5.3:-6211113 | MS.gene21534:CDS |
| CACTCCACCCATTCTTGAAA+AGG | 0.414267 | 5.3:+6211879 | None:intergenic |
| ATGTTTGCCCGTATGGTTAG+TGG | 0.417439 | 5.3:+6210074 | None:intergenic |
| CGTTGGTGGATCGATGGCTT+TGG | 0.417946 | 5.3:-6210310 | MS.gene21534:CDS |
| AAAAGGTTGTCCATCTGAAT+AGG | 0.421657 | 5.3:+6210638 | None:intergenic |
| ACGGGCAAACATTGTGGGTT+CGG | 0.430334 | 5.3:-6210063 | MS.gene21534:CDS |
| ACCCACAATGTTTGCCCGTA+TGG | 0.441085 | 5.3:+6210067 | None:intergenic |
| TGTGGGTTCGGCTTTGCAAT+GGG | 0.445153 | 5.3:-6210051 | MS.gene21534:CDS |
| TTGTCATACCTAAGCTAGTA+AGG | 0.446445 | 5.3:-6209995 | MS.gene21534:CDS |
| ATTTGGAGTCATTGGGTGCC+AGG | 0.447196 | 5.3:+6210235 | None:intergenic |
| AAGATTGAACCAAGTCCAAA+TGG | 0.447760 | 5.3:-6211084 | MS.gene21534:CDS |
| ACTCAATATTTAGAAATTCA+AGG | 0.453429 | 5.3:-6211821 | MS.gene21534:CDS |
| AAGGTATCCCCATTTGGACT+TGG | 0.464282 | 5.3:+6211075 | None:intergenic |
| ACAACTCTACCTGCAGAAAC+AGG | 0.465698 | 5.3:+6210272 | None:intergenic |
| TAATTCACCCGTGCTTCAAA+AGG | 0.468928 | 5.3:+6210621 | None:intergenic |
| ACCTTATTGGAATTCTTGGA+TGG | 0.470171 | 5.3:-6211057 | MS.gene21534:CDS |
| TTTCTCCAACCAAAGTCTAC+TGG | 0.470585 | 5.3:-6210560 | MS.gene21534:CDS |
| CAACTGCTCTATCCCTTCAC+AGG | 0.470796 | 5.3:-6212048 | MS.gene21534:intron |
| TGTCTAAACAGATTGTAATA+GGG | 0.475468 | 5.3:-6210749 | MS.gene21534:intron |
| TGCCTTCAATTTCAAAGAAG+AGG | 0.476217 | 5.3:-6211664 | MS.gene21534:CDS |
| TGCTTCAACAGTTCATCTCC+AGG | 0.477142 | 5.3:-6210531 | MS.gene21534:intron |
| GGCTCAATCTTCAGTCCAAA+AGG | 0.477210 | 5.3:-6212110 | MS.gene21534:CDS |
| GGACCAAGCCTTACTAGCTT+AGG | 0.477240 | 5.3:+6209987 | None:intergenic |
| CACCGGATGACACTATAATC+AGG | 0.478910 | 5.3:-6210337 | MS.gene21534:CDS |
| TGAATTACATCTACGGAAAA+GGG | 0.482581 | 5.3:-6210605 | MS.gene21534:CDS |
| ACCCAATGACTCCAAATCTT+GGG | 0.482693 | 5.3:-6210229 | MS.gene21534:CDS |
| TGGAGTGTACTTGATTCAAT+TGG | 0.482722 | 5.3:-6211863 | MS.gene21534:CDS |
| ACCATACGGGCAAACATTGT+GGG | 0.483763 | 5.3:-6210068 | MS.gene21534:CDS |
| AGGTGCGTGCAGTGGAGAGG+AGG | 0.485424 | 5.3:-6211173 | MS.gene21534:CDS |
| GCTTGCTTCTTTAGCACCGA+TGG | 0.486635 | 5.3:+6210413 | None:intergenic |
| CTTCTTTAGCACCGATGGCT+CGG | 0.487707 | 5.3:+6210418 | None:intergenic |
| ACCCGCTGGTGTGTTCTGTT+AGG | 0.488168 | 5.3:-6210025 | MS.gene21534:CDS |
| AGATTGAACCAAGTCCAAAT+GGG | 0.490772 | 5.3:-6211083 | MS.gene21534:CDS |
| GCACAATGACCAACAAACTT+TGG | 0.492071 | 5.3:+6210678 | None:intergenic |
| CAGAAGTTCCAAATTAATCA+AGG | 0.492791 | 5.3:-6212131 | MS.gene21534:CDS |
| CGGTCAGAGTCACTTCGAAC+AGG | 0.494127 | 5.3:-6211917 | MS.gene21534:CDS |
| GAGAATATGGCAATGAAAGA+TGG | 0.497368 | 5.3:-6210109 | MS.gene21534:CDS |
| CATTCAATATTCTTCACGGT+TGG | 0.499725 | 5.3:-6211109 | MS.gene21534:CDS |
| TTGTGGGTTCGGCTTTGCAA+TGG | 0.501115 | 5.3:-6210052 | MS.gene21534:CDS |
| GAAACAGGTGGACTTATTGA+TGG | 0.501429 | 5.3:+6210287 | None:intergenic |
| GCAGATAAACCAGTAGACTT+TGG | 0.503117 | 5.3:+6210551 | None:intergenic |
| CTCAATATTTAGAAATTCAA+GGG | 0.504248 | 5.3:-6211820 | MS.gene21534:intron |
| ATAAACCAGTAGACTTTGGT+TGG | 0.504282 | 5.3:+6210555 | None:intergenic |
| CCAATTCTGGTATGACAAGT+TGG | 0.517736 | 5.3:+6212160 | None:intergenic |
| AACCATACGGGCAAACATTG+TGG | 0.523320 | 5.3:-6210069 | MS.gene21534:CDS |
| TTTGCAATGGGACAACCCGC+TGG | 0.523400 | 5.3:-6210039 | MS.gene21534:CDS |
| TATAATCAGGACTCCGTTGG+TGG | 0.527265 | 5.3:-6210324 | MS.gene21534:CDS |
| ATAAGTCCACCTGTTTCTGC+AGG | 0.528684 | 5.3:-6210281 | MS.gene21534:CDS |
| GCATATTTCCACTAACCATA+CGG | 0.529804 | 5.3:-6210082 | MS.gene21534:CDS |
| GTCCTGATTATAGTGTCATC+CGG | 0.533366 | 5.3:+6210335 | None:intergenic |
| TCCTAACAGAACACACCAGC+GGG | 0.539378 | 5.3:+6210024 | None:intergenic |
| CCTTATTGGAATTCTTGGAT+GGG | 0.539919 | 5.3:-6211056 | MS.gene21534:CDS |
| TTCGGTCTCTTGTGCTGGAG+CGG | 0.541065 | 5.3:-6211937 | MS.gene21534:CDS |
| AGGAGCATGTTGTGCTCTTG+AGG | 0.544378 | 5.3:-6210204 | MS.gene21534:CDS |
| GCAGGTAGAGTTGTACTCGT+TGG | 0.545159 | 5.3:-6210263 | MS.gene21534:CDS |
| GAAGCAAGCTAAGGATCTAG+TGG | 0.546205 | 5.3:-6210399 | MS.gene21534:CDS |
| TTGTACTCGTTGGAGACGCC+TGG | 0.546377 | 5.3:-6210253 | MS.gene21534:CDS |
| TCCTAAAATAACCGAGCCAT+CGG | 0.546688 | 5.3:-6210429 | MS.gene21534:CDS |
| AAGAGGTGCGTGCAGTGGAG+AGG | 0.550530 | 5.3:-6211176 | MS.gene21534:CDS |
| ACTCCACCCATTCTTGAAAA+GGG | 0.552204 | 5.3:+6211880 | None:intergenic |
| CAGCCAAGAGGTGCGTGCAG+TGG | 0.558479 | 5.3:-6211181 | MS.gene21534:CDS |
| ATACCTAAGCTAGTAAGGCT+TGG | 0.561443 | 5.3:-6209990 | MS.gene21534:CDS |
| GGACTCCGTTGGTGGATCGA+TGG | 0.562109 | 5.3:-6210316 | MS.gene21534:CDS |
| AAATTAGTGTGCTCCAGCAA+TGG | 0.570234 | 5.3:+6209966 | None:intergenic |
| AGACGAGGTTGTTGTAGCCA+TGG | 0.572720 | 5.3:+6212201 | None:intergenic |
| AAGGAACATGTTGTAATCGT+GGG | 0.573031 | 5.3:-6212091 | MS.gene21534:CDS |
| AAAGGAACATGTTGTAATCG+TGG | 0.573135 | 5.3:-6212092 | MS.gene21534:CDS |
| GGACTTGCCTCCTATTCAGA+TGG | 0.575892 | 5.3:-6210648 | MS.gene21534:CDS |
| GCACGGGTGAATTACATCTA+CGG | 0.577218 | 5.3:-6210612 | MS.gene21534:CDS |
| TGGGTCTAAACTAGTTGCAA+AGG | 0.577733 | 5.3:-6211037 | MS.gene21534:intron |
| ATTTCAAAGAAGAGGATGAA+AGG | 0.580176 | 5.3:-6211656 | MS.gene21534:intron |
| CACTATAATCAGGACTCCGT+TGG | 0.584665 | 5.3:-6210327 | MS.gene21534:CDS |
| ATTATGTTTAGTAGCTCTGG+AGG | 0.585207 | 5.3:+6210368 | None:intergenic |
| AATCCCATCCACTTAGCTAT+CGG | 0.586271 | 5.3:+6210708 | None:intergenic |
| GGTGCGTGCAGTGGAGAGGA+GGG | 0.589579 | 5.3:-6211172 | MS.gene21534:CDS |
| ATCACCGATAGCTAAGTGGA+TGG | 0.589651 | 5.3:-6210712 | MS.gene21534:CDS |
| CATATTTCCACTAACCATAC+GGG | 0.594920 | 5.3:-6210081 | MS.gene21534:CDS |
| ATGACTCCAAATCTTGGGCA+AGG | 0.595031 | 5.3:-6210224 | MS.gene21534:CDS |
| AGGTTGTCCATCTGAATAGG+AGG | 0.597237 | 5.3:+6210641 | None:intergenic |
| TACGGAAAAGGGTTACGCGC+AGG | 0.600680 | 5.3:-6210594 | MS.gene21534:CDS |
| GTTGGTCATTGTGCTTTCCG+TGG | 0.600904 | 5.3:-6210669 | MS.gene21534:CDS |
| CATGTTGTAATCGTGGGTGG+TGG | 0.604156 | 5.3:-6212085 | MS.gene21534:CDS |
| CAGATTGTAATAGGGTGCGA+CGG | 0.604784 | 5.3:-6210741 | MS.gene21534:CDS |
| AAACATAATGAATTCTACAC+CGG | 0.605859 | 5.3:-6210354 | MS.gene21534:CDS |
| TTGTGCTCTTGAGGATGCAG+TGG | 0.611787 | 5.3:-6210195 | MS.gene21534:CDS |
| TTCGATCACCGATAGCTAAG+TGG | 0.615756 | 5.3:-6210716 | MS.gene21534:CDS |
| ATCTGAATTGAACATGTCCA+TGG | 0.625416 | 5.3:-6212218 | None:intergenic |
| CTAGAGTTGAAACCTGTGAA+GGG | 0.625644 | 5.3:+6212036 | None:intergenic |
| TCACCGATAGCTAAGTGGAT+GGG | 0.628133 | 5.3:-6210711 | MS.gene21534:CDS |
| TCAGAGTCACTTCGAACAGG+TGG | 0.628211 | 5.3:-6211914 | MS.gene21534:CDS |
| GGTGCTAAAGAAGCAAGCTA+AGG | 0.629803 | 5.3:-6210408 | MS.gene21534:CDS |
| GCTAGAGTTGAAACCTGTGA+AGG | 0.639052 | 5.3:+6212035 | None:intergenic |
| CAAAGCCATCGATCCACCAA+CGG | 0.639408 | 5.3:+6210311 | None:intergenic |
| GATTGAACCAAGTCCAAATG+GGG | 0.644561 | 5.3:-6211082 | MS.gene21534:CDS |
| ACGGATATTGTGCAGCCAAG+AGG | 0.645003 | 5.3:-6211193 | MS.gene21534:intron |
| CTGAATAGGAGGCAAGTCCA+CGG | 0.650582 | 5.3:+6210652 | None:intergenic |
| ATGGTGGTGAAGTCTGAGGA+TGG | 0.653495 | 5.3:-6211699 | MS.gene21534:CDS |
| GAATATTGAATGCTATCAGG+AGG | 0.654073 | 5.3:+6211120 | None:intergenic |
| GAAGGGATAGAGCAGTTGCA+AGG | 0.666482 | 5.3:+6212053 | None:intergenic |
| ATATCAGCTGTACAGGATGG+TGG | 0.671683 | 5.3:-6211715 | MS.gene21534:intron |
| ACTCTACCTGCAGAAACAGG+TGG | 0.672264 | 5.3:+6210275 | None:intergenic |
| CAGGATGGTGGTGAAGTCTG+AGG | 0.679338 | 5.3:-6211703 | MS.gene21534:CDS |
| TTTAAGAATCATAAAAGACG+AGG | 0.685989 | 5.3:+6212186 | None:intergenic |
| TTCCTAACAGAACACACCAG+CGG | 0.695061 | 5.3:+6210023 | None:intergenic |
| ATGGTTAGTGGAAATATGCG+CGG | 0.713230 | 5.3:+6210086 | None:intergenic |
| GAACATGTTGTAATCGTGGG+TGG | 0.726429 | 5.3:-6212088 | MS.gene21534:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATGAAATGCATAA+CGG | - | chr5.3:6210934-6210953 | MS.gene21534:intron | 15.0% |
| !! | AGTTATTATCAAAGTTATTA+TGG | + | chr5.3:6210534-6210553 | None:intergenic | 15.0% |
| !! | TTGTAAATCTAATAAAATCA+TGG | + | chr5.3:6211185-6211204 | None:intergenic | 15.0% |
| !!! | TTTTATTAGATTTACAAACT+TGG | - | chr5.3:6211188-6211207 | MS.gene21534:intron | 15.0% |
| !! | ACTCAATATTTAGAAATTCA+AGG | - | chr5.3:6210325-6210344 | MS.gene21534:CDS | 20.0% |
| !! | ATTAAGAAGTGAAAAATTGT+GGG | - | chr5.3:6210830-6210849 | MS.gene21534:intron | 20.0% |
| !! | CTCAATATTTAGAAATTCAA+GGG | - | chr5.3:6210326-6210345 | MS.gene21534:CDS | 20.0% |
| !! | TATTAAGAAGTGAAAAATTG+TGG | - | chr5.3:6210829-6210848 | MS.gene21534:intron | 20.0% |
| !!! | TCAATTTGTTAACACTTTTT+AGG | + | chr5.3:6211372-6211391 | None:intergenic | 20.0% |
| !!! | TTTTCACTTCTTAATACAAT+GGG | + | chr5.3:6210825-6210844 | None:intergenic | 20.0% |
| !!! | TTTTTCACTTCTTAATACAA+TGG | + | chr5.3:6210826-6210845 | None:intergenic | 20.0% |
| ! | AAACATAATGAATTCTACAC+CGG | - | chr5.3:6211792-6211811 | MS.gene21534:intron | 25.0% |
| ! | AATATATGCATTGTGCAATA+AGG | + | chr5.3:6210388-6210407 | None:intergenic | 25.0% |
| ! | ATAGCATTCAATATTCTTCA+CGG | - | chr5.3:6211033-6211052 | MS.gene21534:intron | 25.0% |
| ! | ATGTCTAAACAGATTGTAAT+AGG | - | chr5.3:6211396-6211415 | MS.gene21534:intron | 25.0% |
| ! | ATTGTAATTTATGGTGTGTT+TGG | - | chr5.3:6211138-6211157 | MS.gene21534:CDS | 25.0% |
| ! | GAATTATGTTTAAACACAGT+CGG | + | chr5.3:6211238-6211257 | None:intergenic | 25.0% |
| ! | GTTACTAATAAGTCCATATA+TGG | - | chr5.3:6211640-6211659 | MS.gene21534:intron | 25.0% |
| ! | TATTAATCTAACCACATGAT+TGG | - | chr5.3:6211278-6211297 | MS.gene21534:intron | 25.0% |
| ! | TATTACAATCTGTTTAGACA+TGG | + | chr5.3:6211397-6211416 | None:intergenic | 25.0% |
| ! | TCAAATGATAAAATGATGCA+TGG | + | chr5.3:6210877-6210896 | None:intergenic | 25.0% |
| ! | TCAGGTAATTTAACCATATA+TGG | + | chr5.3:6211656-6211675 | None:intergenic | 25.0% |
| ! | TGAAAAATAGTTGAGTTCAA+TGG | - | chr5.3:6211690-6211709 | MS.gene21534:CDS | 25.0% |
| ! | TGTCTAAACAGATTGTAATA+GGG | - | chr5.3:6211397-6211416 | MS.gene21534:intron | 25.0% |
| ! | TTATCCACACATCATATATA+TGG | + | chr5.3:6210712-6210731 | None:intergenic | 25.0% |
| ! | TTCATATGAACAATAAACTC+AGG | + | chr5.3:6211674-6211693 | None:intergenic | 25.0% |
| ! | TTTAAGAATCATAAAAGACG+AGG | + | chr5.3:6209963-6209982 | None:intergenic | 25.0% |
| !! | AGGTTAGTCATTGTAATTTA+TGG | - | chr5.3:6211129-6211148 | MS.gene21534:CDS | 25.0% |
| !! | ATCTTAGATATTTTCACTAC+TGG | - | chr5.3:6210743-6210762 | MS.gene21534:intron | 25.0% |
| !!! | ATCATTTGAGTTGTACTAAT+GGG | - | chr5.3:6210888-6210907 | MS.gene21534:intron | 25.0% |
| !!! | TATCATTTGAGTTGTACTAA+TGG | - | chr5.3:6210887-6210906 | MS.gene21534:intron | 25.0% |
| AACTTGGTTGACAAAACATT+TGG | - | chr5.3:6211204-6211223 | MS.gene21534:intron | 30.0% | |
| AGATTGAGCCTTGATTAATT+TGG | + | chr5.3:6210026-6210045 | None:intergenic | 30.0% | |
| ATAAAATGATGCATGGACAT+CGG | + | chr5.3:6210870-6210889 | None:intergenic | 30.0% | |
| ATTTCAAAGAAGAGGATGAA+AGG | - | chr5.3:6210490-6210509 | MS.gene21534:intron | 30.0% | |
| CAGAAGTTCCAAATTAATCA+AGG | - | chr5.3:6210015-6210034 | MS.gene21534:CDS | 30.0% | |
| GAAGAATATTGAATGCTATC+AGG | + | chr5.3:6211032-6211051 | None:intergenic | 30.0% | |
| GTTAGTGCAGTATTTGATAT+TGG | - | chr5.3:6210650-6210669 | MS.gene21534:CDS | 30.0% | |
| TGAATTACATCTACGGAAAA+GGG | - | chr5.3:6211541-6211560 | MS.gene21534:intron | 30.0% | |
| TTCATTATGTTTAGTAGCTC+TGG | + | chr5.3:6211784-6211803 | None:intergenic | 30.0% | |
| ! | ATTTGATATTGGTGCTTGAT+AGG | - | chr5.3:6210661-6210680 | MS.gene21534:CDS | 30.0% |
| ! | TTTTCTTCTTCCTACCAAAT+AGG | - | chr5.3:6210781-6210800 | MS.gene21534:intron | 30.0% |
| ! | TTTTGTGCAGTATGTTTTCA+GGG | + | chr5.3:6211310-6211329 | None:intergenic | 30.0% |
| !! | ATCCTCTTCTTTGAAATTGA+AGG | + | chr5.3:6210487-6210506 | None:intergenic | 30.0% |
| !!! | TATATGGATGGACCTTTTTT+TGG | + | chr5.3:6210696-6210715 | None:intergenic | 30.0% |
| AAAAGGTTGTCCATCTGAAT+AGG | + | chr5.3:6211511-6211530 | None:intergenic | 35.0% | |
| AAAGGAACATGTTGTAATCG+TGG | - | chr5.3:6210054-6210073 | MS.gene21534:CDS | 35.0% | |
| AAATAGTTGAGTTCAATGGC+AGG | - | chr5.3:6211694-6211713 | MS.gene21534:CDS | 35.0% | |
| AAGATTGAACCAAGTCCAAA+TGG | - | chr5.3:6211062-6211081 | MS.gene21534:CDS | 35.0% | |
| AAGGAACATGTTGTAATCGT+GGG | - | chr5.3:6210055-6210074 | MS.gene21534:CDS | 35.0% | |
| ACCTTATTGGAATTCTTGGA+TGG | - | chr5.3:6211089-6211108 | MS.gene21534:CDS | 35.0% | |
| ACTTCTGACTGAAAATGTGT+TGG | - | chr5.3:6210567-6210586 | MS.gene21534:CDS | 35.0% | |
| AGATTGAACCAAGTCCAAAT+GGG | - | chr5.3:6211063-6211082 | MS.gene21534:CDS | 35.0% | |
| ATAAACCAGTAGACTTTGGT+TGG | + | chr5.3:6211594-6211613 | None:intergenic | 35.0% | |
| ATAATATCAGCTGTACAGGA+TGG | - | chr5.3:6210428-6210447 | MS.gene21534:CDS | 35.0% | |
| CATATTTCCACTAACCATAC+GGG | - | chr5.3:6212065-6212084 | MS.gene21534:CDS | 35.0% | |
| CATTCAATATTCTTCACGGT+TGG | - | chr5.3:6211037-6211056 | MS.gene21534:intron | 35.0% | |
| CCACACATCATATATATGGA+TGG | + | chr5.3:6210708-6210727 | None:intergenic | 35.0% | |
| CCATCCATATATATGATGTG+TGG | - | chr5.3:6210705-6210724 | MS.gene21534:CDS | 35.0% | |
| CCTTATTGGAATTCTTGGAT+GGG | - | chr5.3:6211090-6211109 | MS.gene21534:CDS | 35.0% | |
| CTGAAAACATACTGCACAAA+AGG | - | chr5.3:6211309-6211328 | MS.gene21534:intron | 35.0% | |
| GAATATTGAATGCTATCAGG+AGG | + | chr5.3:6211029-6211048 | None:intergenic | 35.0% | |
| GAGAATATGGCAATGAAAGA+TGG | - | chr5.3:6212037-6212056 | MS.gene21534:intron | 35.0% | |
| GCATATTTCCACTAACCATA+CGG | - | chr5.3:6212064-6212083 | MS.gene21534:CDS | 35.0% | |
| GGATACCTTATTGGAATTCT+TGG | - | chr5.3:6211085-6211104 | MS.gene21534:CDS | 35.0% | |
| GTGAATTACATCTACGGAAA+AGG | - | chr5.3:6211540-6211559 | MS.gene21534:intron | 35.0% | |
| GTTCATAATATCAGCTGTAC+AGG | - | chr5.3:6210424-6210443 | MS.gene21534:CDS | 35.0% | |
| TAAAATGATGCATGGACATC+GGG | + | chr5.3:6210869-6210888 | None:intergenic | 35.0% | |
| TAGGACTAAAGCTTCAGAAT+TGG | + | chr5.3:6211353-6211372 | None:intergenic | 35.0% | |
| TGCCTTCAATTTCAAAGAAG+AGG | - | chr5.3:6210482-6210501 | MS.gene21534:intron | 35.0% | |
| TGGACTTATTAGTAACAACC+TGG | + | chr5.3:6211636-6211655 | None:intergenic | 35.0% | |
| TGGAGTGTACTTGATTCAAT+TGG | - | chr5.3:6210283-6210302 | MS.gene21534:CDS | 35.0% | |
| TTGTACTAATGGGACGTTAT+TGG | - | chr5.3:6210898-6210917 | MS.gene21534:intron | 35.0% | |
| TTGTCATACCTAAGCTAGTA+AGG | - | chr5.3:6212151-6212170 | MS.gene21534:CDS | 35.0% | |
| ! | CGATTACAACATGTTCCTTT+TGG | + | chr5.3:6210054-6210073 | None:intergenic | 35.0% |
| ! | CTTGTGTTGGTATCAAACAT+TGG | + | chr5.3:6210606-6210625 | None:intergenic | 35.0% |
| ! | CTTTTGTGCAGTATGTTTTC+AGG | + | chr5.3:6211311-6211330 | None:intergenic | 35.0% |
| ! | TTTTCTGAGCCAAAGTTTGT+TGG | - | chr5.3:6211459-6211478 | MS.gene21534:intron | 35.0% |
| !! | ACATTTTCAGTCAGAAGTGT+TGG | + | chr5.3:6210565-6210584 | None:intergenic | 35.0% |
| !! | ATTATGTTTAGTAGCTCTGG+AGG | + | chr5.3:6211781-6211800 | None:intergenic | 35.0% |
| !! | GAAGACGCTTTTAGAGAATA+TGG | - | chr5.3:6212024-6212043 | MS.gene21534:intron | 35.0% |
| AAAATGATGCATGGACATCG+GGG | + | chr5.3:6210868-6210887 | None:intergenic | 40.0% | |
| AAATTAGTGTGCTCCAGCAA+TGG | + | chr5.3:6212183-6212202 | None:intergenic | 40.0% | |
| AATCCCATCCACTTAGCTAT+CGG | + | chr5.3:6211441-6211460 | None:intergenic | 40.0% | |
| ACCCAATGACTCCAAATCTT+GGG | - | chr5.3:6211917-6211936 | MS.gene21534:CDS | 40.0% | |
| ACTCCACCCATTCTTGAAAA+GGG | + | chr5.3:6210269-6210288 | None:intergenic | 40.0% | |
| AGGTCCATCCTACCAAAAAA+AGG | - | chr5.3:6210681-6210700 | MS.gene21534:CDS | 40.0% | |
| ATACCTAAGCTAGTAAGGCT+TGG | - | chr5.3:6212156-6212175 | MS.gene21534:CDS | 40.0% | |
| ATGGTTAGTGGAAATATGCG+CGG | + | chr5.3:6212063-6212082 | None:intergenic | 40.0% | |
| CCAACTTGTCATACCAGAAT+TGG | - | chr5.3:6209986-6210005 | MS.gene21534:CDS | 40.0% | |
| CCAATTCTGGTATGACAAGT+TGG | + | chr5.3:6209989-6210008 | None:intergenic | 40.0% | |
| CCCATCCAAGAATTCCAATA+AGG | + | chr5.3:6211093-6211112 | None:intergenic | 40.0% | |
| CTAAGGATCTAGTGGAAAAC+TGG | - | chr5.3:6211755-6211774 | MS.gene21534:intron | 40.0% | |
| CTAGAGTTGAAACCTGTGAA+GGG | + | chr5.3:6210113-6210132 | None:intergenic | 40.0% | |
| GATTGAACCAAGTCCAAATG+GGG | - | chr5.3:6211064-6211083 | MS.gene21534:CDS | 40.0% | |
| GCACAATGACCAACAAACTT+TGG | + | chr5.3:6211471-6211490 | None:intergenic | 40.0% | |
| GCAGATAAACCAGTAGACTT+TGG | + | chr5.3:6211598-6211617 | None:intergenic | 40.0% | |
| GTCCTGATTATAGTGTCATC+CGG | + | chr5.3:6211814-6211833 | None:intergenic | 40.0% | |
| TAATTCACCCGTGCTTCAAA+AGG | + | chr5.3:6211528-6211547 | None:intergenic | 40.0% | |
| TAGACTTTGGTTGGAGAAAC+AGG | + | chr5.3:6211585-6211604 | None:intergenic | 40.0% | |
| TATATTAGCTGAGCTTGAGC+TGG | - | chr5.3:6210402-6210421 | MS.gene21534:CDS | 40.0% | |
| TCAGTGTCATGTACTTGTGT+TGG | + | chr5.3:6210619-6210638 | None:intergenic | 40.0% | |
| TCCAAATGGGGATACCTTAT+TGG | - | chr5.3:6211076-6211095 | MS.gene21534:CDS | 40.0% | |
| TCCTAAAATAACCGAGCCAT+CGG | - | chr5.3:6211717-6211736 | MS.gene21534:intron | 40.0% | |
| TGGGTCTAAACTAGTTGCAA+AGG | - | chr5.3:6211109-6211128 | MS.gene21534:CDS | 40.0% | |
| TTGTGTTGAATTCTCAGGCT+TGG | - | chr5.3:6210184-6210203 | MS.gene21534:CDS | 40.0% | |
| TTTCTCCAACCAAAGTCTAC+TGG | - | chr5.3:6211586-6211605 | MS.gene21534:intron | 40.0% | |
| ! | GAAACAGGTGGACTTATTGA+TGG | + | chr5.3:6211862-6211881 | None:intergenic | 40.0% |
| ! | TCCAATAAGGTATCCCCATT+TGG | + | chr5.3:6211080-6211099 | None:intergenic | 40.0% |
| !! | CACTCACCCTTTTCAAGAAT+GGG | - | chr5.3:6210260-6210279 | MS.gene21534:CDS | 40.0% |
| !! | TCACTCACCCTTTTCAAGAA+TGG | - | chr5.3:6210259-6210278 | MS.gene21534:CDS | 40.0% |
| !!! | ATGGACAACCTTTTGAAGCA+CGG | - | chr5.3:6211517-6211536 | MS.gene21534:intron | 40.0% |
| !!! | GAGGGTACTTTTGGAAACTT+TGG | - | chr5.3:6210992-6211011 | MS.gene21534:intron | 40.0% |
| !!! | TGGACCTTTTTTTGGTAGGA+TGG | + | chr5.3:6210688-6210707 | None:intergenic | 40.0% |
| !!! | TGGATGGACCTTTTTTTGGT+AGG | + | chr5.3:6210692-6210711 | None:intergenic | 40.0% |
| AACCATACGGGCAAACATTG+TGG | - | chr5.3:6212077-6212096 | MS.gene21534:CDS | 45.0% | |
| ACAACTCTACCTGCAGAAAC+AGG | + | chr5.3:6211877-6211896 | None:intergenic | 45.0% | |
| ACCATACGGGCAAACATTGT+GGG | - | chr5.3:6212078-6212097 | MS.gene21534:CDS | 45.0% | |
| AGGTTGTCCATCTGAATAGG+AGG | + | chr5.3:6211508-6211527 | None:intergenic | 45.0% | |
| ATATCAGCTGTACAGGATGG+TGG | - | chr5.3:6210431-6210450 | MS.gene21534:CDS | 45.0% | |
| ATCACCGATAGCTAAGTGGA+TGG | - | chr5.3:6211434-6211453 | MS.gene21534:intron | 45.0% | |
| ATGACTCCAAATCTTGGGCA+AGG | - | chr5.3:6211922-6211941 | MS.gene21534:CDS | 45.0% | |
| ATGTTTGCCCGTATGGTTAG+TGG | + | chr5.3:6212075-6212094 | None:intergenic | 45.0% | |
| CACCCAATGACTCCAAATCT+TGG | - | chr5.3:6211916-6211935 | MS.gene21534:CDS | 45.0% | |
| CACCGGATGACACTATAATC+AGG | - | chr5.3:6211809-6211828 | MS.gene21534:intron | 45.0% | |
| CACTATAATCAGGACTCCGT+TGG | - | chr5.3:6211819-6211838 | MS.gene21534:intron | 45.0% | |
| CACTCCACCCATTCTTGAAA+AGG | + | chr5.3:6210270-6210289 | None:intergenic | 45.0% | |
| CAGATTGTAATAGGGTGCGA+CGG | - | chr5.3:6211405-6211424 | MS.gene21534:intron | 45.0% | |
| CAGGGTCATAACCAATCATG+TGG | + | chr5.3:6211292-6211311 | None:intergenic | 45.0% | |
| CCTGAGAATTCAACACAAGC+AGG | + | chr5.3:6210182-6210201 | None:intergenic | 45.0% | |
| CCTGCTTGTGTTGAATTCTC+AGG | - | chr5.3:6210179-6210198 | MS.gene21534:CDS | 45.0% | |
| GAACATGTTGTAATCGTGGG+TGG | - | chr5.3:6210058-6210077 | MS.gene21534:CDS | 45.0% | |
| GAAGCAAGCTAAGGATCTAG+TGG | - | chr5.3:6211747-6211766 | MS.gene21534:intron | 45.0% | |
| GCACGGGTGAATTACATCTA+CGG | - | chr5.3:6211534-6211553 | MS.gene21534:intron | 45.0% | |
| GCTAGAGTTGAAACCTGTGA+AGG | + | chr5.3:6210114-6210133 | None:intergenic | 45.0% | |
| GGCTCAATCTTCAGTCCAAA+AGG | - | chr5.3:6210036-6210055 | MS.gene21534:CDS | 45.0% | |
| GGTGCTAAAGAAGCAAGCTA+AGG | - | chr5.3:6211738-6211757 | MS.gene21534:intron | 45.0% | |
| TATAATCAGGACTCCGTTGG+TGG | - | chr5.3:6211822-6211841 | MS.gene21534:CDS | 45.0% | |
| TCACCGATAGCTAAGTGGAT+GGG | - | chr5.3:6211435-6211454 | MS.gene21534:intron | 45.0% | |
| TGCTTCAACAGTTCATCTCC+AGG | - | chr5.3:6211615-6211634 | MS.gene21534:intron | 45.0% | |
| TTCCTAACAGAACACACCAG+CGG | + | chr5.3:6212126-6212145 | None:intergenic | 45.0% | |
| TTCGATCACCGATAGCTAAG+TGG | - | chr5.3:6211430-6211449 | MS.gene21534:intron | 45.0% | |
| ! | AAGGTATCCCCATTTGGACT+TGG | + | chr5.3:6211074-6211093 | None:intergenic | 45.0% |
| ! | ACTTCTGAGAGCTCCAATTC+TGG | + | chr5.3:6210002-6210021 | None:intergenic | 45.0% |
| ! | GCCCAAGATTTGGAGTCATT+GGG | + | chr5.3:6211921-6211940 | None:intergenic | 45.0% |
| ! | TGCCCAAGATTTGGAGTCAT+TGG | + | chr5.3:6211922-6211941 | None:intergenic | 45.0% |
| !! | AGTTTTGCCACTGGCCTATT+TGG | + | chr5.3:6210798-6210817 | None:intergenic | 45.0% |
| !! | ATAAGTCCACCTGTTTCTGC+AGG | - | chr5.3:6211865-6211884 | MS.gene21534:CDS | 45.0% |
| !! | GAATTCTCAGGCTTGGTGTT+CGG | - | chr5.3:6210191-6210210 | MS.gene21534:CDS | 45.0% |
| !! | TCACCCTTTTCAAGAATGGG+TGG | - | chr5.3:6210263-6210282 | MS.gene21534:CDS | 45.0% |
| !!! | ACCGATGGCTCGGTTATTTT+AGG | + | chr5.3:6211721-6211740 | None:intergenic | 45.0% |
| !!! | TGGACAACCTTTTGAAGCAC+GGG | - | chr5.3:6211518-6211537 | MS.gene21534:intron | 45.0% |
| ACCCACAATGTTTGCCCGTA+TGG | + | chr5.3:6212082-6212101 | None:intergenic | 50.0% | |
| ACGGATATTGTGCAGCCAAG+AGG | - | chr5.3:6210953-6210972 | MS.gene21534:intron | 50.0% | |
| ACGGGCAAACATTGTGGGTT+CGG | - | chr5.3:6212083-6212102 | MS.gene21534:CDS | 50.0% | |
| ACTCTACCTGCAGAAACAGG+TGG | + | chr5.3:6211874-6211893 | None:intergenic | 50.0% | |
| AGACGAGGTTGTTGTAGCCA+TGG | + | chr5.3:6209948-6209967 | None:intergenic | 50.0% | |
| CAAAGCCATCGATCCACCAA+CGG | + | chr5.3:6211838-6211857 | None:intergenic | 50.0% | |
| CAACTGCTCTATCCCTTCAC+AGG | - | chr5.3:6210098-6210117 | MS.gene21534:CDS | 50.0% | |
| CATGCTCCTTGCCCAAGATT+TGG | + | chr5.3:6211931-6211950 | None:intergenic | 50.0% | |
| CATGTTGTAATCGTGGGTGG+TGG | - | chr5.3:6210061-6210080 | MS.gene21534:CDS | 50.0% | |
| CTGAATAGGAGGCAAGTCCA+CGG | + | chr5.3:6211497-6211516 | None:intergenic | 50.0% | |
| CTTCCTACCAAATAGGCCAG+TGG | - | chr5.3:6210788-6210807 | MS.gene21534:intron | 50.0% | |
| GAAGGGATAGAGCAGTTGCA+AGG | + | chr5.3:6210096-6210115 | None:intergenic | 50.0% | |
| GCAGGTAGAGTTGTACTCGT+TGG | - | chr5.3:6211883-6211902 | MS.gene21534:CDS | 50.0% | |
| GGACTTGCCTCCTATTCAGA+TGG | - | chr5.3:6211498-6211517 | MS.gene21534:intron | 50.0% | |
| GTTGGTCATTGTGCTTTCCG+TGG | - | chr5.3:6211477-6211496 | MS.gene21534:intron | 50.0% | |
| TCAGAGTCACTTCGAACAGG+TGG | - | chr5.3:6210232-6210251 | MS.gene21534:CDS | 50.0% | |
| TCCTAACAGAACACACCAGC+GGG | + | chr5.3:6212125-6212144 | None:intergenic | 50.0% | |
| TGTGGGTTCGGCTTTGCAAT+GGG | - | chr5.3:6212095-6212114 | MS.gene21534:CDS | 50.0% | |
| TTGTGCTCTTGAGGATGCAG+TGG | - | chr5.3:6211951-6211970 | MS.gene21534:intron | 50.0% | |
| TTGTGGGTTCGGCTTTGCAA+TGG | - | chr5.3:6212094-6212113 | MS.gene21534:CDS | 50.0% | |
| ! | AGGAGCATGTTGTGCTCTTG+AGG | - | chr5.3:6211942-6211961 | MS.gene21534:CDS | 50.0% |
| ! | AGTAAGGCTTGGTCCATTGC+TGG | - | chr5.3:6212167-6212186 | MS.gene21534:CDS | 50.0% |
| ! | ATGGTGGTGAAGTCTGAGGA+TGG | - | chr5.3:6210447-6210466 | MS.gene21534:intron | 50.0% |
| ! | ATTTGGAGTCATTGGGTGCC+AGG | + | chr5.3:6211914-6211933 | None:intergenic | 50.0% |
| ! | GCTTGCTTCTTTAGCACCGA+TGG | + | chr5.3:6211736-6211755 | None:intergenic | 50.0% |
| ! | GGACCAAGCCTTACTAGCTT+AGG | + | chr5.3:6212162-6212181 | None:intergenic | 50.0% |
| ! | TTGCCACTGGCCTATTTGGT+AGG | + | chr5.3:6210794-6210813 | None:intergenic | 50.0% |
| !! | CTTCTTTAGCACCGATGGCT+CGG | + | chr5.3:6211731-6211750 | None:intergenic | 50.0% |
| !!! | AGTGGAGAGGAGGGTACTTT+TGG | - | chr5.3:6210983-6211002 | MS.gene21534:intron | 50.0% |
| ACCCGCTGGTGTGTTCTGTT+AGG | - | chr5.3:6212121-6212140 | MS.gene21534:CDS | 55.0% | |
| ATGCATGGACATCGGGGAGT+GGG | + | chr5.3:6210862-6210881 | None:intergenic | 55.0% | |
| CGGTCAGAGTCACTTCGAAC+AGG | - | chr5.3:6210229-6210248 | MS.gene21534:CDS | 55.0% | |
| TACGGAAAAGGGTTACGCGC+AGG | - | chr5.3:6211552-6211571 | MS.gene21534:intron | 55.0% | |
| TGGTGTTCGGTCTCTTGTGC+TGG | - | chr5.3:6210204-6210223 | MS.gene21534:CDS | 55.0% | |
| TTCGGTCTCTTGTGCTGGAG+CGG | - | chr5.3:6210209-6210228 | MS.gene21534:CDS | 55.0% | |
| TTGTACTCGTTGGAGACGCC+TGG | - | chr5.3:6211893-6211912 | MS.gene21534:CDS | 55.0% | |
| TTTGCAATGGGACAACCCGC+TGG | - | chr5.3:6212107-6212126 | MS.gene21534:CDS | 55.0% | |
| ! | ATGGGTGCGAGTTTTGCCAC+TGG | + | chr5.3:6210807-6210826 | None:intergenic | 55.0% |
| ! | CAGGATGGTGGTGAAGTCTG+AGG | - | chr5.3:6210443-6210462 | MS.gene21534:intron | 55.0% |
| ! | CGTTGGTGGATCGATGGCTT+TGG | - | chr5.3:6211836-6211855 | MS.gene21534:CDS | 55.0% |
| GATGCATGGACATCGGGGAG+TGG | + | chr5.3:6210863-6210882 | None:intergenic | 60.0% | |
| TCTCCACTGCACGCACCTCT+TGG | + | chr5.3:6210971-6210990 | None:intergenic | 60.0% | |
| ! | AAGAGGTGCGTGCAGTGGAG+AGG | - | chr5.3:6210970-6210989 | MS.gene21534:intron | 60.0% |
| ! | ATCGTGGGTGGTGGCATTGC+AGG | - | chr5.3:6210070-6210089 | MS.gene21534:CDS | 60.0% |
| ! | GGACTCCGTTGGTGGATCGA+TGG | - | chr5.3:6211830-6211849 | MS.gene21534:CDS | 60.0% |
| AGGTGCGTGCAGTGGAGAGG+AGG | - | chr5.3:6210973-6210992 | MS.gene21534:intron | 65.0% | |
| GGTGCGTGCAGTGGAGAGGA+GGG | - | chr5.3:6210974-6210993 | MS.gene21534:intron | 65.0% | |
| ! | CAGCCAAGAGGTGCGTGCAG+TGG | - | chr5.3:6210965-6210984 | MS.gene21534:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6209941 | 6212227 | 6209941 | ID=MS.gene21534 |
| chr5.3 | mRNA | 6209941 | 6212227 | 6209941 | ID=MS.gene21534.t1;Parent=MS.gene21534 |
| chr5.3 | exon | 6212049 | 6212227 | 6212049 | ID=MS.gene21534.t1.exon1;Parent=MS.gene21534.t1 |
| chr5.3 | CDS | 6212049 | 6212227 | 6212049 | ID=cds.MS.gene21534.t1;Parent=MS.gene21534.t1 |
| chr5.3 | exon | 6211821 | 6211967 | 6211821 | ID=MS.gene21534.t1.exon2;Parent=MS.gene21534.t1 |
| chr5.3 | CDS | 6211821 | 6211967 | 6211821 | ID=cds.MS.gene21534.t1;Parent=MS.gene21534.t1 |
| chr5.3 | exon | 6211657 | 6211722 | 6211657 | ID=MS.gene21534.t1.exon3;Parent=MS.gene21534.t1 |
| chr5.3 | CDS | 6211657 | 6211722 | 6211657 | ID=cds.MS.gene21534.t1;Parent=MS.gene21534.t1 |
| chr5.3 | exon | 6211038 | 6211200 | 6211038 | ID=MS.gene21534.t1.exon4;Parent=MS.gene21534.t1 |
| chr5.3 | CDS | 6211038 | 6211200 | 6211038 | ID=cds.MS.gene21534.t1;Parent=MS.gene21534.t1 |
| chr5.3 | exon | 6210532 | 6210760 | 6210532 | ID=MS.gene21534.t1.exon5;Parent=MS.gene21534.t1 |
| chr5.3 | CDS | 6210532 | 6210760 | 6210532 | ID=cds.MS.gene21534.t1;Parent=MS.gene21534.t1 |
| chr5.3 | exon | 6209941 | 6210452 | 6209941 | ID=MS.gene21534.t1.exon6;Parent=MS.gene21534.t1 |
| chr5.3 | CDS | 6209941 | 6210452 | 6209941 | ID=cds.MS.gene21534.t1;Parent=MS.gene21534.t1 |
| Gene Sequence |
| Protein sequence |
