AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40875

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40875.t1 MTR_5g045160 88.456 667 37 4 1 630 1 664 0.0 1131
MS.gene40875.t1 MTR_6g445440 79.456 662 78 7 1 630 1 636 0.0 1033
MS.gene40875.t1 MTR_3g103410 67.967 718 126 9 3 630 4 707 0.0 932
MS.gene40875.t1 MTR_5g045130 80.671 507 61 4 152 630 2 499 0.0 820
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40875.t1 AT5G13210 55.620 694 223 10 1 630 1 673 0.0 751
MS.gene40875.t1 AT5G43400 52.111 687 240 8 1 630 1 655 0.0 701
MS.gene40875.t1 AT5G43390 51.528 687 227 10 2 630 5 643 0.0 671
MS.gene40875.t1 AT3G24780 54.472 615 193 8 50 595 107 703 0.0 653

Find 184 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATGAAGAAACTTGAAAT+TGG 0.206773 5.2:+35460018 None:intergenic
GTGGTGGTGGTGGTAGGGTT+AGG 0.242127 5.2:+35460763 None:intergenic
GCCTTCTTTGTTGGACTTGC+CGG 0.260625 5.2:+35460477 None:intergenic
GAATCTGCTGACATTGTTCT+TGG 0.284328 5.2:-35458956 MS.gene40875:CDS
AAATCAGTCTTGCTGCTAAA+TGG 0.287484 5.2:-35459925 MS.gene40875:CDS
GCTTCTATGCTGCCGCTCTA+TGG 0.294484 5.2:-35460456 MS.gene40875:CDS
CTTCTCCTTATAAAACTTCA+TGG 0.297463 5.2:+35459664 None:intergenic
TGAAGATGAAGATTTCCTTT+TGG 0.298695 5.2:+35460276 None:intergenic
CTTGCTGTGTGTGATGTGTC+TGG 0.301225 5.2:-35459446 MS.gene40875:CDS
ATATGCGATCAAACACCTTC+TGG 0.312936 5.2:+35459232 None:intergenic
GAGTTGCCTGAGGTGTTTAT+TGG 0.349776 5.2:-35459734 MS.gene40875:CDS
GGGGTTTGATTCCTTACAAT+AGG 0.355708 5.2:-35459700 MS.gene40875:CDS
TGGTGGTGGTGGTAGGGTTA+GGG 0.356380 5.2:+35460764 None:intergenic
TCAACCCCATCGGTGGGTTT+CGG 0.356465 5.2:+35460674 None:intergenic
ATCAAGCGTCTGCAAACTCT+TGG 0.365158 5.2:-35459131 MS.gene40875:CDS
AGGAGGCGCATTATGCTTAT+AGG 0.369882 5.2:-35459808 MS.gene40875:CDS
TGTTTATTGGTGCTAATCAA+TGG 0.374653 5.2:-35459721 MS.gene40875:CDS
GCAGCTTCCATGGCTTCTAC+AGG 0.387857 5.2:+35458913 None:intergenic
CCTAGTGATTGCTTGGTAAT+CGG 0.388642 5.2:+35459104 None:intergenic
GGAGAGGTTTGAGAAGTACT+TGG 0.389397 5.2:-35459624 MS.gene40875:CDS
AGAAGACGATAGAGGATCTC+AGG 0.394537 5.2:+35460358 None:intergenic
GCCATGGAAGCTGCCATCGC+TGG 0.399741 5.2:-35458904 MS.gene40875:CDS
GTTTGTGAGGAACATGGATT+GGG 0.401906 5.2:-35459271 MS.gene40875:CDS
GAGTGGATGGAAAGGAAATC+TGG 0.403522 5.2:-35460301 MS.gene40875:CDS
AGCATAGAAGCCTTCTTTGT+TGG 0.404217 5.2:+35460468 None:intergenic
GGGTTTGATTCCTTACAATA+GGG 0.405295 5.2:-35459699 MS.gene40875:CDS
GAAGGTGTTTGATCGCATAT+TGG 0.405938 5.2:-35459229 MS.gene40875:CDS
CGATGTCTTCGTCGATCAAA+TGG 0.407547 5.2:-35460725 MS.gene40875:CDS
GGAAACTGCTCATGCTTTGA+AGG 0.409132 5.2:-35460095 MS.gene40875:CDS
GGAGGCGCATTATGCTTATA+GGG 0.411872 5.2:-35459807 MS.gene40875:CDS
GTTTATTGGTGCTAATCAAT+GGG 0.412509 5.2:-35459720 MS.gene40875:CDS
ATCGACGAAGACATCGTTAG+TGG 0.418636 5.2:+35460732 None:intergenic
CTTTCTGAGTGGATGGCACC+GGG 0.421088 5.2:+35459007 None:intergenic
CTCCGTGGTGTTCGTGGTAC+CGG 0.428319 5.2:-35460496 MS.gene40875:CDS
CACAACTAGTTTCTGATACT+CGG 0.428515 5.2:+35458879 None:intergenic
TATACTTCCTAGTGATTGCT+TGG 0.431774 5.2:+35459097 None:intergenic
AGTTTGTGAGGAACATGGAT+TGG 0.432352 5.2:-35459272 MS.gene40875:CDS
TTACAATAGGGTTGCTTCTG+TGG 0.434673 5.2:-35459687 MS.gene40875:CDS
CCGTTGACTCTTCCTTTGAT+CGG 0.435307 5.2:-35459895 MS.gene40875:CDS
AGTGGTTGTGGTGGTGGTGG+TGG 0.436280 5.2:+35460750 None:intergenic
TCATGAAGAAACTTGAAATT+GGG 0.436482 5.2:+35460019 None:intergenic
ACTAGGAAGTATAGAAAGAA+AGG 0.441720 5.2:-35459087 MS.gene40875:CDS
GCCAGCGATGGCAGCTTCCA+TGG 0.443302 5.2:+35458903 None:intergenic
GTTCCTCACAAACTTTGTCT+TGG 0.445968 5.2:+35459281 None:intergenic
GTGAAGGAACATTGGTAGCT+AGG 0.448466 5.2:+35460410 None:intergenic
ACAACTAGTTTCTGATACTC+GGG 0.457651 5.2:+35458880 None:intergenic
TGTAACCTCCGTGGTGTTCG+TGG 0.460467 5.2:-35460502 MS.gene40875:CDS
GTTCCTTCACTCGCTAACTT+TGG 0.462173 5.2:-35460397 MS.gene40875:CDS
CGTTGATGATTTGCTCAAGA+AGG 0.468757 5.2:-35459486 MS.gene40875:CDS
CCTTTCTGAGTGGATGGCAC+CGG 0.470831 5.2:+35459006 None:intergenic
ATAGGGTTCGTGATCGTTTG+AGG 0.471872 5.2:-35459790 MS.gene40875:CDS
GATTGTAGAGTGTAGATCTC+AGG 0.472510 5.2:+35460790 None:intergenic
GAAGACATCGTTAGTGGTTG+TGG 0.479010 5.2:+35460738 None:intergenic
AGAGGTGGCAACGAGAGTTA+AGG 0.479298 5.2:-35460125 MS.gene40875:CDS
TCTAGCAAAAGAATTGAAGT+TGG 0.482544 5.2:+35460699 None:intergenic
GCCACTCCTTTCTGAGTGGA+TGG 0.483109 5.2:+35459000 None:intergenic
ATCGTTAGTGGTTGTGGTGG+TGG 0.483318 5.2:+35460744 None:intergenic
TTGCTGTGTGTGATGTGTCT+GGG 0.483780 5.2:-35459445 MS.gene40875:CDS
GCCTCAGCTTCATGTGATTG+AGG 0.484160 5.2:-35459319 MS.gene40875:CDS
AGGAGGATCAGATGATTAAG+AGG 0.485373 5.2:-35459182 MS.gene40875:CDS
AAGTATAGAAAGAAAGGGTA+TGG 0.487906 5.2:-35459081 MS.gene40875:CDS
TACTTGGAGGATGTGAAGGC+AGG 0.488941 5.2:-35459608 MS.gene40875:CDS
AGTGTCTCAGAAGGAGTATC+AGG 0.489014 5.2:+35460583 None:intergenic
GTATCAGAAACTAGTTGTGC+TGG 0.495109 5.2:-35458875 MS.gene40875:CDS
GGAAGGTTATTACTTTCAGC+AGG 0.508350 5.2:-35459344 MS.gene40875:CDS
ACAGAAGCAACCCTATTGTA+AGG 0.510787 5.2:+35459689 None:intergenic
GGAATATGAAGGTGTGGAGG+AGG 0.511393 5.2:-35459825 MS.gene40875:CDS
CCTCAGCTTCATGTGATTGA+GGG 0.511737 5.2:-35459318 MS.gene40875:CDS
CTGATACTCGGGGCCAGCGA+TGG 0.513732 5.2:+35458891 None:intergenic
CACTCAGAAAGGAGTGGCAC+TGG 0.513905 5.2:-35458995 MS.gene40875:CDS
TCAAGCGTCTGCAAACTCTT+GGG 0.514244 5.2:-35459130 MS.gene40875:CDS
TGCCAAGAGGATCTTCCCTC+GGG 0.516133 5.2:-35459849 MS.gene40875:CDS
ATTATAGAGTCTTTGCGTGA+TGG 0.519156 5.2:-35459545 MS.gene40875:CDS
CTCCCGAGGGAAGATCCTCT+TGG 0.520806 5.2:+35459847 None:intergenic
CAGCTTCCATGGCTTCTACA+GGG 0.521562 5.2:+35458914 None:intergenic
GAGGTTTGAGAAGTACTTGG+AGG 0.521875 5.2:-35459621 MS.gene40875:CDS
TGAAGGAACATTGGTAGCTA+GGG 0.522147 5.2:+35460411 None:intergenic
ATATTGGATGTGGCTGTCAA+TGG 0.529469 5.2:-35459213 MS.gene40875:CDS
TCACCAACGTTTCTCTCCAC+TGG 0.531788 5.2:-35460640 MS.gene40875:CDS
GGAGGTTACAGACGAGTTTG+AGG 0.532302 5.2:+35460515 None:intergenic
GTTGATGATTTGCTCAAGAA+GGG 0.536020 5.2:-35459485 MS.gene40875:CDS
GAGGTTACAGACGAGTTTGA+GGG 0.536086 5.2:+35460516 None:intergenic
GTTAGTGGTTGTGGTGGTGG+TGG 0.543529 5.2:+35460747 None:intergenic
ACCGGCAAGTCCAACAAAGA+AGG 0.544742 5.2:-35460478 MS.gene40875:CDS
TCGAGAGGCTCAAACTAGCT+TGG 0.545154 5.2:-35460558 MS.gene40875:CDS
AAAGGAGTGGCACTGGTAAG+TGG 0.549583 5.2:-35458988 MS.gene40875:CDS
GACAAAGTTTGTGAGGAACA+TGG 0.551414 5.2:-35459277 MS.gene40875:CDS
TTGCCAAGAGGATCTTCCCT+CGG 0.551799 5.2:-35459850 MS.gene40875:CDS
AAAGGAAATCTGGATCCAAA+AGG 0.552387 5.2:-35460291 MS.gene40875:CDS
AACCTTCGAGAAGACGATAG+AGG 0.553075 5.2:+35460350 None:intergenic
CAAGGATAACAAAGGGTGGA+AGG 0.554421 5.2:-35460176 MS.gene40875:CDS
TATTGGATGTGGCTGTCAAT+GGG 0.560043 5.2:-35459212 MS.gene40875:CDS
ATGCTTTGAAGGAAGAGAAG+AGG 0.561707 5.2:-35460084 MS.gene40875:CDS
TGTTGTTGTAGTTCTTGTTG+TGG 0.562180 5.2:+35460206 None:intergenic
CCGATTACCAAGCAATCACT+AGG 0.565104 5.2:-35459104 MS.gene40875:CDS
GGAAGAGAAGAGGATTGCCT+TGG 0.568272 5.2:-35460074 MS.gene40875:CDS
CCCTCAATCACATGAAGCTG+AGG 0.568852 5.2:+35459318 None:intergenic
TAGCCAAAGTTAGCGAGTGA+AGG 0.568875 5.2:+35460394 None:intergenic
ATCCTCTATCGTCTTCTCGA+AGG 0.571604 5.2:-35460352 MS.gene40875:CDS
CCGGTGCCATCCACTCAGAA+AGG 0.571959 5.2:-35459006 MS.gene40875:CDS
AACGCAGAAAGAAGAGTGGA+TGG 0.573710 5.2:-35460314 MS.gene40875:CDS
TGTTGTAGTTCTTGTTGTGG+TGG 0.574406 5.2:+35460209 None:intergenic
GTTTGATCGCATATTGGATG+TGG 0.574432 5.2:-35459223 MS.gene40875:CDS
CTAGGAAGTATAGAAAGAAA+GGG 0.575902 5.2:-35459086 MS.gene40875:CDS
AACGAGAGTTAAGGCTCAGA+AGG 0.578204 5.2:-35460116 MS.gene40875:CDS
AGAAACCGAAACCCACCGAT+GGG 0.579222 5.2:-35460679 MS.gene40875:CDS
GGGAAGACTACTATTGCTGC+TGG 0.579975 5.2:-35459587 MS.gene40875:CDS
CAGTGCCACTCCTTTCTGAG+TGG 0.580391 5.2:+35458996 None:intergenic
GAGAGACTCGAAGGCCACCC+CGG 0.584902 5.2:-35459025 MS.gene40875:CDS
AGGGAAGATCCTCTTGGCAA+TGG 0.584939 5.2:+35459853 None:intergenic
GAAGACGATAGAGGATCTCA+GGG 0.585178 5.2:+35460359 None:intergenic
TTGGAATCTGAGAGACTCGA+AGG 0.585593 5.2:-35459034 MS.gene40875:CDS
GATCTTTGTCTTTAGTGACA+TGG 0.587705 5.2:-35459160 MS.gene40875:CDS
TTTCAGTCAACCCCATCGGT+GGG 0.587798 5.2:+35460668 None:intergenic
AGACTCCATCGTGACTAAAG+AGG 0.589624 5.2:-35460143 MS.gene40875:CDS
TTCCCTCGGGAGGAATATGA+AGG 0.591428 5.2:-35459836 MS.gene40875:CDS
TATAAGCCCTGTAGAAGCCA+TGG 0.596604 5.2:-35458920 MS.gene40875:CDS
TCAAAGGAAGAGTCAACGGA+AGG 0.598171 5.2:+35459899 None:intergenic
CTCAGCTTCATGTGATTGAG+GGG 0.599232 5.2:-35459317 MS.gene40875:CDS
ACATTGTTCTTGGATAATGA+AGG 0.599605 5.2:-35458946 MS.gene40875:CDS
AGGACGTCAAGGATAACAAA+GGG 0.599606 5.2:-35460183 MS.gene40875:CDS
TTTATTGGTGCTAATCAATG+GGG 0.599749 5.2:-35459719 MS.gene40875:CDS
TTTGTGAGGAACATGGATTG+GGG 0.600633 5.2:-35459270 MS.gene40875:CDS
AGAAAGAAGAGTGGATGGAA+AGG 0.602721 5.2:-35460309 MS.gene40875:CDS
GAAGTACTTGGAGGATGTGA+AGG 0.604063 5.2:-35459612 MS.gene40875:CDS
ACTTGGAGGATGTGAAGGCA+GGG 0.604217 5.2:-35459607 MS.gene40875:CDS
TGTGTTGGTGCCGTTGAGGA+AGG 0.604572 5.2:-35459762 MS.gene40875:CDS
GTGAAGTGGCTGAGTTGCAG+TGG 0.607162 5.2:-35459517 MS.gene40875:CDS
CCGATCAAAGGAAGAGTCAA+CGG 0.608539 5.2:+35459895 None:intergenic
GGTGCCGTTGAGGAAGGTGT+TGG 0.609929 5.2:-35459756 MS.gene40875:CDS
GAGTCTTTGCGTGATGGAGA+TGG 0.610505 5.2:-35459539 MS.gene40875:CDS
CTCTCGACGAGTGTCTCAGA+AGG 0.610855 5.2:+35460574 None:intergenic
CACCTTCATATTCCTCCCGA+GGG 0.610961 5.2:+35459834 None:intergenic
GTTAGCGAGTGAAGGAACAT+TGG 0.613012 5.2:+35460402 None:intergenic
CTGAGTGGATGGCACCGGGG+TGG 0.616153 5.2:+35459011 None:intergenic
CTACAACAACAAGGACGTCA+AGG 0.616279 5.2:-35460194 MS.gene40875:CDS
TAACAGCGTTGACCGATCAA+AGG 0.617986 5.2:+35459883 None:intergenic
TGCTCAAGAAGGGAAAGATG+AGG 0.619614 5.2:-35459475 MS.gene40875:CDS
GGCTGTCAATGGGAATCTCA+AGG 0.621591 5.2:-35459202 MS.gene40875:CDS
TAGAAACCGAAACCCACCGA+TGG 0.622403 5.2:-35460680 MS.gene40875:CDS
AGGTGGACCAACGAGAGTGA+CGG 0.624845 5.2:+35460810 None:intergenic
TGCCACCTCTTTAGTCACGA+TGG 0.625845 5.2:+35460138 None:intergenic
ACACCTTCATATTCCTCCCG+AGG 0.626089 5.2:+35459833 None:intergenic
TTAGCACCAATAAACACCTC+AGG 0.626398 5.2:+35459728 None:intergenic
AAGGATAACAAAGGGTGGAA+GGG 0.628322 5.2:-35460175 MS.gene40875:CDS
ATGGCCGCCGTCACTCTCGT+TGG 0.629832 5.2:-35460817 MS.gene40875:CDS
AACTCCAACACCTTCCTCAA+CGG 0.630137 5.2:+35459752 None:intergenic
TTGTGAGGAACATGGATTGG+GGG 0.639683 5.2:-35459269 MS.gene40875:CDS
CAAGAGGATCTTCCCTCGGG+AGG 0.641432 5.2:-35459846 MS.gene40875:CDS
CAACAAGAACTACAACAACA+AGG 0.642561 5.2:-35460203 MS.gene40875:CDS
AGTCCAAGACAAAGTTTGTG+AGG 0.642724 5.2:-35459284 MS.gene40875:CDS
TCGGGAGGAATATGAAGGTG+TGG 0.645333 5.2:-35459831 MS.gene40875:CDS
GGAAGAAGAAATCGAGACAA+GGG 0.645821 5.2:+35460614 None:intergenic
TGTAGAGTGTAGATCTCAGG+TGG 0.646826 5.2:+35460793 None:intergenic
AAGGAGTATCAGGAACAACA+TGG 0.647046 5.2:+35460593 None:intergenic
TCGTTTGAGGAAAGATGTGT+TGG 0.647723 5.2:-35459777 MS.gene40875:CDS
GAAGGTGTTGGAGTTGCCTG+AGG 0.648237 5.2:-35459744 MS.gene40875:CDS
CTTCTGAGACACTCGTCGAG+AGG 0.650304 5.2:-35460573 MS.gene40875:CDS
AAGATGTGTTGGTGCCGTTG+AGG 0.652976 5.2:-35459766 MS.gene40875:CDS
AAGGACGTCAAGGATAACAA+AGG 0.653186 5.2:-35460184 MS.gene40875:CDS
CAAAGGAAGAGTCAACGGAA+GGG 0.653236 5.2:+35459900 None:intergenic
CTCCATCGTGACTAAAGAGG+TGG 0.653770 5.2:-35460140 MS.gene40875:CDS
GCAAAACGCAGAAAGAAGAG+TGG 0.655725 5.2:-35460318 MS.gene40875:CDS
GACATCGTTAGTGGTTGTGG+TGG 0.658761 5.2:+35460741 None:intergenic
TGGAAGAAGAAATCGAGACA+AGG 0.663800 5.2:+35460613 None:intergenic
GCGTGATGGAGATGGTGAAG+TGG 0.668727 5.2:-35459531 MS.gene40875:CDS
GATGAACACTGATTTCCAGA+AGG 0.669878 5.2:-35459247 MS.gene40875:CDS
AAAGACTCTATAATCTCGTG+AGG 0.670125 5.2:+35459554 None:intergenic
ACGTCAAGGATAACAAAGGG+TGG 0.670879 5.2:-35460180 MS.gene40875:CDS
ATCGAGACAAGGGTTACCAG+TGG 0.673142 5.2:+35460624 None:intergenic
TCAGCTTCATGTGATTGAGG+GGG 0.673206 5.2:-35459316 MS.gene40875:CDS
GTTACAGACGAGTTTGAGGG+CGG 0.674635 5.2:+35460519 None:intergenic
TGGACCAACGAGAGTGACGG+CGG 0.675637 5.2:+35460813 None:intergenic
GCCATCCACTCAGAAAGGAG+TGG 0.675952 5.2:-35459001 MS.gene40875:CDS
GGAGGAATATGAAGGTGTGG+AGG 0.684289 5.2:-35459828 MS.gene40875:CDS
TTACCAGTGGAGAGAAACGT+TGG 0.690822 5.2:+35460637 None:intergenic
TTTCTGAGTGGATGGCACCG+GGG 0.698885 5.2:+35459008 None:intergenic
CAACTAGTTTCTGATACTCG+GGG 0.701259 5.2:+35458881 None:intergenic
TGCCGGTACCACGAACACCA+CGG 0.707609 5.2:+35460494 None:intergenic
TATGTGAGACCATTGCCAAG+AGG 0.711412 5.2:-35459862 MS.gene40875:CDS
GAAACCGAAACCCACCGATG+GGG 0.722976 5.2:-35460678 MS.gene40875:CDS
AAACTCGTCTGTAACCTCCG+TGG 0.731806 5.2:-35460511 MS.gene40875:CDS
TGTCAATGGGAATCTCAAGG+AGG 0.758838 5.2:-35459199 MS.gene40875:CDS
CGGTACCACGAACACCACGG+AGG 0.805564 5.2:+35460497 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATCATGAAGAAACTTGAAAT+TGG + chr5.2:35459672-35459691 None:intergenic 25.0%
! TCATGAAGAAACTTGAAATT+GGG + chr5.2:35459671-35459690 None:intergenic 25.0%
! TTATTCCTCTCCTTAAAAAA+GGG + chr5.2:35459442-35459461 None:intergenic 25.0%
! TTTATTCCTCTCCTTAAAAA+AGG + chr5.2:35459443-35459462 None:intergenic 25.0%
AAGTATAGAAAGAAAGGGTA+TGG - chr5.2:35460606-35460625 MS.gene40875:CDS 30.0%
ACATTGTTCTTGGATAATGA+AGG - chr5.2:35460741-35460760 MS.gene40875:CDS 30.0%
AGATTCCAAAAAACTATCTG+AGG + chr5.2:35460642-35460661 None:intergenic 30.0%
CTTCTCCTTATAAAACTTCA+TGG + chr5.2:35460026-35460045 None:intergenic 30.0%
TATTCCTCTCCTTAAAAAAG+GGG + chr5.2:35459441-35459460 None:intergenic 30.0%
TCTAGCAAAAGAATTGAAGT+TGG + chr5.2:35458991-35459010 None:intergenic 30.0%
! ACTAGGAAGTATAGAAAGAA+AGG - chr5.2:35460600-35460619 MS.gene40875:CDS 30.0%
! ATTTTCATGAAACCATAGAG+CGG + chr5.2:35459246-35459265 None:intergenic 30.0%
! CTAGGAAGTATAGAAAGAAA+GGG - chr5.2:35460601-35460620 MS.gene40875:CDS 30.0%
! TGAAGATGAAGATTTCCTTT+TGG + chr5.2:35459414-35459433 None:intergenic 30.0%
!! GTTTATTGGTGCTAATCAAT+GGG - chr5.2:35459967-35459986 MS.gene40875:CDS 30.0%
!! TGTTTATTGGTGCTAATCAA+TGG - chr5.2:35459966-35459985 MS.gene40875:CDS 30.0%
!! TTTATTGGTGCTAATCAATG+GGG - chr5.2:35459968-35459987 MS.gene40875:CDS 30.0%
!! TTTTGCTGATTGTTTGAAGA+AGG - chr5.2:35459706-35459725 MS.gene40875:CDS 30.0%
!!! ATCTCGAGTTTTTGAAATCT+GGG - chr5.2:35459729-35459748 MS.gene40875:CDS 30.0%
!!! GAAGTTTTTGAAGCATGATA+AGG - chr5.2:35460042-35460061 MS.gene40875:CDS 30.0%
AAAGACTCTATAATCTCGTG+AGG + chr5.2:35460136-35460155 None:intergenic 35.0%
AAAGGAAATCTGGATCCAAA+AGG - chr5.2:35459396-35459415 MS.gene40875:intron 35.0%
AAATCAGTCTTGCTGCTAAA+TGG - chr5.2:35459762-35459781 MS.gene40875:CDS 35.0%
ATTATAGAGTCTTTGCGTGA+TGG - chr5.2:35460142-35460161 MS.gene40875:CDS 35.0%
CAACAAGAACTACAACAACA+AGG - chr5.2:35459484-35459503 MS.gene40875:CDS 35.0%
GATCTTTGTCTTTAGTGACA+TGG - chr5.2:35460527-35460546 MS.gene40875:CDS 35.0%
GGGTTTGATTCCTTACAATA+GGG - chr5.2:35459988-35460007 MS.gene40875:CDS 35.0%
TATACTTCCTAGTGATTGCT+TGG + chr5.2:35460593-35460612 None:intergenic 35.0%
TGTTGTTGTAGTTCTTGTTG+TGG + chr5.2:35459484-35459503 None:intergenic 35.0%
! ACAACTAGTTTCTGATACTC+GGG + chr5.2:35460810-35460829 None:intergenic 35.0%
! CACAACTAGTTTCTGATACT+CGG + chr5.2:35460811-35460830 None:intergenic 35.0%
!! ATCAACAAGCTTTTTAGCCA+AGG + chr5.2:35459633-35459652 None:intergenic 35.0%
!! GTTGATGATTTGCTCAAGAA+GGG - chr5.2:35460202-35460221 MS.gene40875:CDS 35.0%
!! TGTGGCCATGAAGTTTTATA+AGG - chr5.2:35460018-35460037 MS.gene40875:CDS 35.0%
!!! CTTCATCAACCCCTTTTTTA+AGG - chr5.2:35459429-35459448 MS.gene40875:intron 35.0%
!!! GATCTCGAGTTTTTGAAATC+TGG - chr5.2:35459728-35459747 MS.gene40875:CDS 35.0%
!!! TTTTGAAGCATGATAAGGAG+AGG - chr5.2:35460047-35460066 MS.gene40875:CDS 35.0%
AAGGACGTCAAGGATAACAA+AGG - chr5.2:35459503-35459522 MS.gene40875:CDS 40.0%
AAGGATAACAAAGGGTGGAA+GGG - chr5.2:35459512-35459531 MS.gene40875:CDS 40.0%
ACAGAAGCAACCCTATTGTA+AGG + chr5.2:35460001-35460020 None:intergenic 40.0%
AGAAAGAAGAGTGGATGGAA+AGG - chr5.2:35459378-35459397 MS.gene40875:intron 40.0%
AGCATAGAAGCCTTCTTTGT+TGG + chr5.2:35459222-35459241 None:intergenic 40.0%
AGGACGTCAAGGATAACAAA+GGG - chr5.2:35459504-35459523 MS.gene40875:CDS 40.0%
AGGAGGATCAGATGATTAAG+AGG - chr5.2:35460505-35460524 MS.gene40875:CDS 40.0%
AGTCCAAGACAAAGTTTGTG+AGG - chr5.2:35460403-35460422 MS.gene40875:CDS 40.0%
AGTTTGTGAGGAACATGGAT+TGG - chr5.2:35460415-35460434 MS.gene40875:CDS 40.0%
ATATGCGATCAAACACCTTC+TGG + chr5.2:35460458-35460477 None:intergenic 40.0%
ATATTGGATGTGGCTGTCAA+TGG - chr5.2:35460474-35460493 MS.gene40875:CDS 40.0%
GAATCTGCTGACATTGTTCT+TGG - chr5.2:35460731-35460750 MS.gene40875:CDS 40.0%
GACAAAGTTTGTGAGGAACA+TGG - chr5.2:35460410-35460429 MS.gene40875:CDS 40.0%
GATTGTAGAGTGTAGATCTC+AGG + chr5.2:35458900-35458919 None:intergenic 40.0%
GGAAGAAGAAATCGAGACAA+GGG + chr5.2:35459076-35459095 None:intergenic 40.0%
GGAAGGTTATTACTTTCAGC+AGG - chr5.2:35460343-35460362 MS.gene40875:CDS 40.0%
GGGGTTTGATTCCTTACAAT+AGG - chr5.2:35459987-35460006 MS.gene40875:CDS 40.0%
GTAATAACCTTCCCTTTCCA+TGG + chr5.2:35460336-35460355 None:intergenic 40.0%
GTATCAGAAACTAGTTGTGC+TGG - chr5.2:35460812-35460831 MS.gene40875:CDS 40.0%
GTTCCTCACAAACTTTGTCT+TGG + chr5.2:35460409-35460428 None:intergenic 40.0%
GTTTGATCGCATATTGGATG+TGG - chr5.2:35460464-35460483 MS.gene40875:CDS 40.0%
GTTTGTGAGGAACATGGATT+GGG - chr5.2:35460416-35460435 MS.gene40875:CDS 40.0%
TATTGGATGTGGCTGTCAAT+GGG - chr5.2:35460475-35460494 MS.gene40875:CDS 40.0%
TCGTTTGAGGAAAGATGTGT+TGG - chr5.2:35459910-35459929 MS.gene40875:CDS 40.0%
TGGAAGAAGAAATCGAGACA+AGG + chr5.2:35459077-35459096 None:intergenic 40.0%
TTACAATAGGGTTGCTTCTG+TGG - chr5.2:35460000-35460019 MS.gene40875:CDS 40.0%
TTAGCACCAATAAACACCTC+AGG + chr5.2:35459962-35459981 None:intergenic 40.0%
! ATGTTTTCAGTCAACCCCAT+CGG + chr5.2:35459026-35459045 None:intergenic 40.0%
! CAACTAGTTTCTGATACTCG+GGG + chr5.2:35460809-35460828 None:intergenic 40.0%
! CCTAGTGATTGCTTGGTAAT+CGG + chr5.2:35460586-35460605 None:intergenic 40.0%
! TGAAGGAACATTGGTAGCTA+GGG + chr5.2:35459279-35459298 None:intergenic 40.0%
! TGTTGTAGTTCTTGTTGTGG+TGG + chr5.2:35459481-35459500 None:intergenic 40.0%
! TTTGTGAGGAACATGGATTG+GGG - chr5.2:35460417-35460436 MS.gene40875:CDS 40.0%
!! AAGGAGTATCAGGAACAACA+TGG + chr5.2:35459097-35459116 None:intergenic 40.0%
!! ACATTGGTAGCTAGGGTTTT+AGG + chr5.2:35459272-35459291 None:intergenic 40.0%
!! AGCAGCAAGACTGATTTTTG+TGG + chr5.2:35459759-35459778 None:intergenic 40.0%
!! ATGCTTTGAAGGAAGAGAAG+AGG - chr5.2:35459603-35459622 MS.gene40875:CDS 40.0%
!! CATTGGTAGCTAGGGTTTTA+GGG + chr5.2:35459271-35459290 None:intergenic 40.0%
!! CGTTGATGATTTGCTCAAGA+AGG - chr5.2:35460201-35460220 MS.gene40875:CDS 40.0%
!! GAAGGTGTTTGATCGCATAT+TGG - chr5.2:35460458-35460477 MS.gene40875:CDS 40.0%
!! GATGAACACTGATTTCCAGA+AGG - chr5.2:35460440-35460459 MS.gene40875:CDS 40.0%
!! GCAGCAAGACTGATTTTTGT+GGG + chr5.2:35459758-35459777 None:intergenic 40.0%
!!! CTGTGCCTCAGATAGTTTTT+TGG - chr5.2:35460634-35460653 MS.gene40875:CDS 40.0%
!!! TCAACCCCTTTTTTAAGGAG+AGG - chr5.2:35459434-35459453 MS.gene40875:intron 40.0%
AACCTTCGAGAAGACGATAG+AGG + chr5.2:35459340-35459359 None:intergenic 45.0%
AACGAGAGTTAAGGCTCAGA+AGG - chr5.2:35459571-35459590 MS.gene40875:CDS 45.0%
AACGCAGAAAGAAGAGTGGA+TGG - chr5.2:35459373-35459392 MS.gene40875:intron 45.0%
AACTCCAACACCTTCCTCAA+CGG + chr5.2:35459938-35459957 None:intergenic 45.0%
AATGCTACACACACCTCCAT+AGG + chr5.2:35460283-35460302 None:intergenic 45.0%
ACGTCAAGGATAACAAAGGG+TGG - chr5.2:35459507-35459526 MS.gene40875:CDS 45.0%
AGAAGACGATAGAGGATCTC+AGG + chr5.2:35459332-35459351 None:intergenic 45.0%
AGACTCCATCGTGACTAAAG+AGG - chr5.2:35459544-35459563 MS.gene40875:CDS 45.0%
ATAGGGTTCGTGATCGTTTG+AGG - chr5.2:35459897-35459916 MS.gene40875:CDS 45.0%
ATCAAGCGTCTGCAAACTCT+TGG - chr5.2:35460556-35460575 MS.gene40875:CDS 45.0%
ATCCTCTATCGTCTTCTCGA+AGG - chr5.2:35459335-35459354 MS.gene40875:CDS 45.0%
ATCGACGAAGACATCGTTAG+TGG + chr5.2:35458958-35458977 None:intergenic 45.0%
ATGCTACACACACCTCCATA+GGG + chr5.2:35460282-35460301 None:intergenic 45.0%
CAAAGGAAGAGTCAACGGAA+GGG + chr5.2:35459790-35459809 None:intergenic 45.0%
CAAGGATAACAAAGGGTGGA+AGG - chr5.2:35459511-35459530 MS.gene40875:CDS 45.0%
CCGATCAAAGGAAGAGTCAA+CGG + chr5.2:35459795-35459814 None:intergenic 45.0%
CCGATTACCAAGCAATCACT+AGG - chr5.2:35460583-35460602 MS.gene40875:CDS 45.0%
CCTCAGCTTCATGTGATTGA+GGG - chr5.2:35460369-35460388 MS.gene40875:CDS 45.0%
CGATGTCTTCGTCGATCAAA+TGG - chr5.2:35458962-35458981 MS.gene40875:CDS 45.0%
CTACAACAACAAGGACGTCA+AGG - chr5.2:35459493-35459512 MS.gene40875:CDS 45.0%
CTCAGCTTCATGTGATTGAG+GGG - chr5.2:35460370-35460389 MS.gene40875:CDS 45.0%
CTGAATTGAACGAGGAACCA+TGG - chr5.2:35460316-35460335 MS.gene40875:CDS 45.0%
GAAGACATCGTTAGTGGTTG+TGG + chr5.2:35458952-35458971 None:intergenic 45.0%
GAAGACGATAGAGGATCTCA+GGG + chr5.2:35459331-35459350 None:intergenic 45.0%
GAGGTTACAGACGAGTTTGA+GGG + chr5.2:35459174-35459193 None:intergenic 45.0%
GAGTGGATGGAAAGGAAATC+TGG - chr5.2:35459386-35459405 MS.gene40875:intron 45.0%
GCAAAACGCAGAAAGAAGAG+TGG - chr5.2:35459369-35459388 MS.gene40875:intron 45.0%
GGAAACTGCTCATGCTTTGA+AGG - chr5.2:35459592-35459611 MS.gene40875:CDS 45.0%
GTTAGCGAGTGAAGGAACAT+TGG + chr5.2:35459288-35459307 None:intergenic 45.0%
GTTCCTTCACTCGCTAACTT+TGG - chr5.2:35459290-35459309 MS.gene40875:CDS 45.0%
TAGCCAAAGTTAGCGAGTGA+AGG + chr5.2:35459296-35459315 None:intergenic 45.0%
TATAAGCCCTGTAGAAGCCA+TGG - chr5.2:35460767-35460786 MS.gene40875:CDS 45.0%
TATGTGAGACCATTGCCAAG+AGG - chr5.2:35459825-35459844 MS.gene40875:CDS 45.0%
TCAAAGGAAGAGTCAACGGA+AGG + chr5.2:35459791-35459810 None:intergenic 45.0%
TCAAGCGTCTGCAAACTCTT+GGG - chr5.2:35460557-35460576 MS.gene40875:CDS 45.0%
TCAGCTTCATGTGATTGAGG+GGG - chr5.2:35460371-35460390 MS.gene40875:CDS 45.0%
TGAACGAGGAACCATGGAAA+GGG - chr5.2:35460322-35460341 MS.gene40875:CDS 45.0%
TGCTCAAGAAGGGAAAGATG+AGG - chr5.2:35460212-35460231 MS.gene40875:CDS 45.0%
TGTAGAGTGTAGATCTCAGG+TGG + chr5.2:35458897-35458916 None:intergenic 45.0%
TGTCAATGGGAATCTCAAGG+AGG - chr5.2:35460488-35460507 MS.gene40875:CDS 45.0%
TTACCAGTGGAGAGAAACGT+TGG + chr5.2:35459053-35459072 None:intergenic 45.0%
TTGAACGAGGAACCATGGAA+AGG - chr5.2:35460321-35460340 MS.gene40875:CDS 45.0%
TTGCTGTGTGTGATGTGTCT+GGG - chr5.2:35460242-35460261 MS.gene40875:CDS 45.0%
TTGGAATCTGAGAGACTCGA+AGG - chr5.2:35460653-35460672 MS.gene40875:CDS 45.0%
! AGGAGGCGCATTATGCTTAT+AGG - chr5.2:35459879-35459898 MS.gene40875:CDS 45.0%
! ATGGAGGTGTGTGTAGCATT+GGG - chr5.2:35460283-35460302 MS.gene40875:CDS 45.0%
! ATGTGTCTGGGAGTATGCAT+GGG - chr5.2:35460254-35460273 MS.gene40875:CDS 45.0%
! GAAGTACTTGGAGGATGTGA+AGG - chr5.2:35460075-35460094 MS.gene40875:CDS 45.0%
! GAGTTGCCTGAGGTGTTTAT+TGG - chr5.2:35459953-35459972 MS.gene40875:CDS 45.0%
! GGAGGCGCATTATGCTTATA+GGG - chr5.2:35459880-35459899 MS.gene40875:CDS 45.0%
! GTGAAGGAACATTGGTAGCT+AGG + chr5.2:35459280-35459299 None:intergenic 45.0%
! GTTGGTGTCTGAATTGAACG+AGG - chr5.2:35460308-35460327 MS.gene40875:CDS 45.0%
! TATGGAGGTGTGTGTAGCAT+TGG - chr5.2:35460282-35460301 MS.gene40875:CDS 45.0%
! TGTGTGTAGCATTGGGTTGT+TGG - chr5.2:35460290-35460309 MS.gene40875:CDS 45.0%
!! AGTGTCTCAGAAGGAGTATC+AGG + chr5.2:35459107-35459126 None:intergenic 45.0%
!! CCGTTGACTCTTCCTTTGAT+CGG - chr5.2:35459792-35459811 MS.gene40875:CDS 45.0%
!! GAGGTTTGAGAAGTACTTGG+AGG - chr5.2:35460066-35460085 MS.gene40875:CDS 45.0%
!! GGAGAGGTTTGAGAAGTACT+TGG - chr5.2:35460063-35460082 MS.gene40875:CDS 45.0%
!! TAACAGCGTTGACCGATCAA+AGG + chr5.2:35459807-35459826 None:intergenic 45.0%
!! TTGTGAGGAACATGGATTGG+GGG - chr5.2:35460418-35460437 MS.gene40875:CDS 45.0%
AAACTCGTCTGTAACCTCCG+TGG - chr5.2:35459176-35459195 MS.gene40875:CDS 50.0%
ACACCTTCATATTCCTCCCG+AGG + chr5.2:35459857-35459876 None:intergenic 50.0%
ACCGGCAAGTCCAACAAAGA+AGG - chr5.2:35459209-35459228 MS.gene40875:CDS 50.0%
ACTTGGAGGATGTGAAGGCA+GGG - chr5.2:35460080-35460099 MS.gene40875:CDS 50.0%
AGAAACCGAAACCCACCGAT+GGG - chr5.2:35459008-35459027 MS.gene40875:CDS 50.0%
AGAGGTGGCAACGAGAGTTA+AGG - chr5.2:35459562-35459581 MS.gene40875:CDS 50.0%
AGGGAAGATCCTCTTGGCAA+TGG + chr5.2:35459837-35459856 None:intergenic 50.0%
ATCGAGACAAGGGTTACCAG+TGG + chr5.2:35459066-35459085 None:intergenic 50.0%
ATCGTTAGTGGTTGTGGTGG+TGG + chr5.2:35458946-35458965 None:intergenic 50.0%
CACCTTCATATTCCTCCCGA+GGG + chr5.2:35459856-35459875 None:intergenic 50.0%
CAGCTTCCATGGCTTCTACA+GGG + chr5.2:35460776-35460795 None:intergenic 50.0%
CCCTCAATCACATGAAGCTG+AGG + chr5.2:35460372-35460391 None:intergenic 50.0%
CTCCATCGTGACTAAAGAGG+TGG - chr5.2:35459547-35459566 MS.gene40875:CDS 50.0%
GACATCGTTAGTGGTTGTGG+TGG + chr5.2:35458949-35458968 None:intergenic 50.0%
GCCTCAGCTTCATGTGATTG+AGG - chr5.2:35460368-35460387 MS.gene40875:CDS 50.0%
GCCTTCTTTGTTGGACTTGC+CGG + chr5.2:35459213-35459232 None:intergenic 50.0%
GGAAGAGAAGAGGATTGCCT+TGG - chr5.2:35459613-35459632 MS.gene40875:CDS 50.0%
GGAGGTTACAGACGAGTTTG+AGG + chr5.2:35459175-35459194 None:intergenic 50.0%
GGCTGTCAATGGGAATCTCA+AGG - chr5.2:35460485-35460504 MS.gene40875:CDS 50.0%
GGGAAGACTACTATTGCTGC+TGG - chr5.2:35460100-35460119 MS.gene40875:CDS 50.0%
GTTACAGACGAGTTTGAGGG+CGG + chr5.2:35459171-35459190 None:intergenic 50.0%
TACTTGGAGGATGTGAAGGC+AGG - chr5.2:35460079-35460098 MS.gene40875:CDS 50.0%
TAGAAACCGAAACCCACCGA+TGG - chr5.2:35459007-35459026 MS.gene40875:CDS 50.0%
TCACCAACGTTTCTCTCCAC+TGG - chr5.2:35459047-35459066 MS.gene40875:CDS 50.0%
TCGAGAGGCTCAAACTAGCT+TGG - chr5.2:35459129-35459148 MS.gene40875:CDS 50.0%
TCGGGAGGAATATGAAGGTG+TGG - chr5.2:35459856-35459875 MS.gene40875:CDS 50.0%
TGCCACCTCTTTAGTCACGA+TGG + chr5.2:35459552-35459571 None:intergenic 50.0%
TGCTACACACACCTCCATAG+GGG + chr5.2:35460281-35460300 None:intergenic 50.0%
TTCCCTCGGGAGGAATATGA+AGG - chr5.2:35459851-35459870 MS.gene40875:CDS 50.0%
TTGCCAAGAGGATCTTCCCT+CGG - chr5.2:35459837-35459856 MS.gene40875:CDS 50.0%
TTTCAGTCAACCCCATCGGT+GGG + chr5.2:35459022-35459041 None:intergenic 50.0%
! CTTGCTGTGTGTGATGTGTC+TGG - chr5.2:35460241-35460260 MS.gene40875:CDS 50.0%
! GAGTCTTTGCGTGATGGAGA+TGG - chr5.2:35460148-35460167 MS.gene40875:CDS 50.0%
! GATGTGTCTGGGAGTATGCA+TGG - chr5.2:35460253-35460272 MS.gene40875:CDS 50.0%
! GGAATATGAAGGTGTGGAGG+AGG - chr5.2:35459862-35459881 MS.gene40875:CDS 50.0%
! GGAGGAATATGAAGGTGTGG+AGG - chr5.2:35459859-35459878 MS.gene40875:CDS 50.0%
! TTTTCAGTCAACCCCATCGG+TGG + chr5.2:35459023-35459042 None:intergenic 50.0%
!! AAAGGAGTGGCACTGGTAAG+TGG - chr5.2:35460699-35460718 MS.gene40875:CDS 50.0%
!! AAGATGTGTTGGTGCCGTTG+AGG - chr5.2:35459921-35459940 MS.gene40875:CDS 50.0%
AGGTGGACCAACGAGAGTGA+CGG + chr5.2:35458880-35458899 None:intergenic 55.0%
CACTCAGAAAGGAGTGGCAC+TGG - chr5.2:35460692-35460711 MS.gene40875:CDS 55.0%
CCTTTCTGAGTGGATGGCAC+CGG + chr5.2:35460684-35460703 None:intergenic 55.0%
CGAGGAACCATGGAAAGGGA+AGG - chr5.2:35460326-35460345 MS.gene40875:CDS 55.0%
CTCTCGACGAGTGTCTCAGA+AGG + chr5.2:35459116-35459135 None:intergenic 55.0%
CTTTCTGAGTGGATGGCACC+GGG + chr5.2:35460683-35460702 None:intergenic 55.0%
GAAACCGAAACCCACCGATG+GGG - chr5.2:35459009-35459028 MS.gene40875:CDS 55.0%
GAGTATGCATGGGACCCCTA+TGG - chr5.2:35460264-35460283 MS.gene40875:CDS 55.0%
GCAGCTTCCATGGCTTCTAC+AGG + chr5.2:35460777-35460796 None:intergenic 55.0%
GCCACTCCTTTCTGAGTGGA+TGG + chr5.2:35460690-35460709 None:intergenic 55.0%
GCCATCCACTCAGAAAGGAG+TGG - chr5.2:35460686-35460705 MS.gene40875:CDS 55.0%
GCTTCTATGCTGCCGCTCTA+TGG - chr5.2:35459231-35459250 MS.gene40875:CDS 55.0%
GTGAAGTGGCTGAGTTGCAG+TGG - chr5.2:35460170-35460189 MS.gene40875:CDS 55.0%
TATGCATGGGACCCCTATGG+AGG - chr5.2:35460267-35460286 MS.gene40875:CDS 55.0%
TGCCAAGAGGATCTTCCCTC+GGG - chr5.2:35459838-35459857 MS.gene40875:CDS 55.0%
TGTAACCTCCGTGGTGTTCG+TGG - chr5.2:35459185-35459204 MS.gene40875:CDS 55.0%
TTTCTGAGTGGATGGCACCG+GGG + chr5.2:35460682-35460701 None:intergenic 55.0%
! CAGTGCCACTCCTTTCTGAG+TGG + chr5.2:35460694-35460713 None:intergenic 55.0%
! GCGTGATGGAGATGGTGAAG+TGG - chr5.2:35460156-35460175 MS.gene40875:CDS 55.0%
! TCAACCCCATCGGTGGGTTT+CGG + chr5.2:35459016-35459035 None:intergenic 55.0%
!! CTTCTGAGACACTCGTCGAG+AGG - chr5.2:35459114-35459133 MS.gene40875:CDS 55.0%
!! GAAGGTGTTGGAGTTGCCTG+AGG - chr5.2:35459943-35459962 MS.gene40875:CDS 55.0%
!! GTTAGTGGTTGTGGTGGTGG+TGG + chr5.2:35458943-35458962 None:intergenic 55.0%
!! TGGTGGTGGTGGTAGGGTTA+GGG + chr5.2:35458926-35458945 None:intergenic 55.0%
!! TGTGTTGGTGCCGTTGAGGA+AGG - chr5.2:35459925-35459944 MS.gene40875:CDS 55.0%
CAAGAGGATCTTCCCTCGGG+AGG - chr5.2:35459841-35459860 MS.gene40875:CDS 60.0%
CTCCCGAGGGAAGATCCTCT+TGG + chr5.2:35459843-35459862 None:intergenic 60.0%
CTCCGTGGTGTTCGTGGTAC+CGG - chr5.2:35459191-35459210 MS.gene40875:CDS 60.0%
TGCCGGTACCACGAACACCA+CGG + chr5.2:35459196-35459215 None:intergenic 60.0%
TGGACCAACGAGAGTGACGG+CGG + chr5.2:35458877-35458896 None:intergenic 60.0%
!! AGTGGTTGTGGTGGTGGTGG+TGG + chr5.2:35458940-35458959 None:intergenic 60.0%
!! CCGGTGCCATCCACTCAGAA+AGG - chr5.2:35460681-35460700 MS.gene40875:CDS 60.0%
!! GGTGCCGTTGAGGAAGGTGT+TGG - chr5.2:35459931-35459950 MS.gene40875:CDS 60.0%
!! GTGGTGGTGGTGGTAGGGTT+AGG + chr5.2:35458927-35458946 None:intergenic 60.0%
!! TGGTGGTGGTGGTGGTGGTA+GGG + chr5.2:35458932-35458951 None:intergenic 60.0%
ATGGCCGCCGTCACTCTCGT+TGG - chr5.2:35458870-35458889 MS.gene40875:CDS 65.0%
CGGTACCACGAACACCACGG+AGG + chr5.2:35459193-35459212 None:intergenic 65.0%
CTGATACTCGGGGCCAGCGA+TGG + chr5.2:35460799-35460818 None:intergenic 65.0%
GAGAGACTCGAAGGCCACCC+CGG - chr5.2:35460662-35460681 MS.gene40875:CDS 65.0%
GCCAGCGATGGCAGCTTCCA+TGG + chr5.2:35460787-35460806 None:intergenic 65.0%
GCCATGGAAGCTGCCATCGC+TGG - chr5.2:35460783-35460802 MS.gene40875:CDS 65.0%
!! GGTTGTGGTGGTGGTGGTGG+TGG + chr5.2:35458937-35458956 None:intergenic 65.0%
!! GTGGTGGTGGTGGTGGTGGT+AGG + chr5.2:35458933-35458952 None:intergenic 65.0%
! CTGAGTGGATGGCACCGGGG+TGG + chr5.2:35460679-35460698 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 35458870 35460839 35458870 ID=MS.gene40875
chr5.2 mRNA 35458870 35460839 35458870 ID=MS.gene40875.t1;Parent=MS.gene40875
chr5.2 exon 35459444 35460839 35459444 ID=MS.gene40875.t1.exon1;Parent=MS.gene40875.t1
chr5.2 CDS 35459444 35460839 35459444 ID=cds.MS.gene40875.t1;Parent=MS.gene40875.t1
chr5.2 exon 35458870 35459366 35458870 ID=MS.gene40875.t1.exon2;Parent=MS.gene40875.t1
chr5.2 CDS 35458870 35459366 35458870 ID=cds.MS.gene40875.t1;Parent=MS.gene40875.t1
Gene Sequence

>MS.gene40875

ATGGCCGCCGTCACTCTCGTTGGTCCACCTGAGATCTACACTCTACAATCAAACCCTAACCCTACCACCACCACCACCACCACAACCACTAACGATGTCTTCGTCGATCAAATGGTAGCCAACTTCAATTCTTTTGCTAGAAACCGAAACCCACCGATGGGGTTGACTGAAAACATGTCACCAACGTTTCTCTCCACTGGTAACCCTTGTCTCGATTTCTTCTTCCATGTTGTTCCTGATACTCCTTCTGAGACACTCGTCGAGAGGCTCAAACTAGCTTGGTCACACAACTCACTCACCGCCCTCAAACTCGTCTGTAACCTCCGTGGTGTTCGTGGTACCGGCAAGTCCAACAAAGAAGGCTTCTATGCTGCCGCTCTATGGTTTCATGAAAATCACCCTAAAACCCTAGCTACCAATGTTCCTTCACTCGCTAACTTTGGCTACTTCAAAGATCTCCCTGAGATCCTCTATCGTCTTCTCGAAGGTTCTGAAGTTCGCAAAACGCAGAAAGAAGAGTGGATGGAAAGGAAATCTGGATCCAAAAGGAAATCTTCATCTTCATCAACCCCTTTTTTAAGGAGAGGAATAAACAAAAAACAACGACACCACCACAACAAGAACTACAACAACAAGGACGTCAAGGATAACAAAGGGTGGAAGGGTACTGAGAAAGACTCCATCGTGACTAAAGAGGTGGCAACGAGAGTTAAGGCTCAGAAGGAAACTGCTCATGCTTTGAAGGAAGAGAAGAGGATTGCCTTGGCTAAAAAGCTTGTTGATCGTTACACTACTGATCCCAATTTCAAGTTTCTTCATGATTGTATCTCTGATCATTTTGCTGATTGTTTGAAGAAGGATCTCGAGTTTTTGAAATCTGGGTCGCCCACAAAAATCAGTCTTGCTGCTAAATGGTGCCCTTCCGTTGACTCTTCCTTTGATCGGTCAACGCTGTTATGTGAGACCATTGCCAAGAGGATCTTCCCTCGGGAGGAATATGAAGGTGTGGAGGAGGCGCATTATGCTTATAGGGTTCGTGATCGTTTGAGGAAAGATGTGTTGGTGCCGTTGAGGAAGGTGTTGGAGTTGCCTGAGGTGTTTATTGGTGCTAATCAATGGGGTTTGATTCCTTACAATAGGGTTGCTTCTGTGGCCATGAAGTTTTATAAGGAGAAGTTTTTGAAGCATGATAAGGAGAGGTTTGAGAAGTACTTGGAGGATGTGAAGGCAGGGAAGACTACTATTGCTGCTGGTGCTTTGCTTCCTCACGAGATTATAGAGTCTTTGCGTGATGGAGATGGTGAAGTGGCTGAGTTGCAGTGGAAGAGAATCGTTGATGATTTGCTCAAGAAGGGAAAGATGAGGAATTGTCTTGCTGTGTGTGATGTGTCTGGGAGTATGCATGGGACCCCTATGGAGGTGTGTGTAGCATTGGGTTGTTGGTGTCTGAATTGAACGAGGAACCATGGAAAGGGAAGGTTATTACTTTCAGCAGGAAGCCTCAGCTTCATGTGATTGAGGGGGATGATCTGAAGTCCAAGACAAAGTTTGTGAGGAACATGGATTGGGGGATGAACACTGATTTCCAGAAGGTGTTTGATCGCATATTGGATGTGGCTGTCAATGGGAATCTCAAGGAGGATCAGATGATTAAGAGGATCTTTGTCTTTAGTGACATGGAGTTTGATCAAGCGTCTGCAAACTCTTGGGAGACCGATTACCAAGCAATCACTAGGAAGTATAGAAAGAAAGGGTATGGTTCTGCTGTGCCTCAGATAGTTTTTTGGAATCTGAGAGACTCGAAGGCCACCCCGGTGCCATCCACTCAGAAAGGAGTGGCACTGGTAAGTGGTTTTTCGAAGAATCTGCTGACATTGTTCTTGGATAATGAAGGTGATATAAGCCCTGTAGAAGCCATGGAAGCTGCCATCGCTGGCCCCGAGTATCAGAAACTAGTTGTGCTGGATTGA
Protein sequence

>MS.gene40875.t1

MAAVTLVGPPEIYTLQSNPNPTTTTTTTTTNDVFVDQMVANFNSFARNRNPPMGLTENMSPTFLSTGNPCLDFFFHVVPDTPSETLVERLKLAWSHNSLTALKLVCNLRGVRGTGKSNKEGFYAAALWFHENHPKTLATNVPSLANFGYFKDLPEILYRLLEGSEVRKTQKEEWMERKSGSKRKSSSSSTPFLRRGINKKQRHHHNKNYNNKDVKDNKGWKGTEKDSIVTKEVATRVKAQKETAHALKEEKRIALAKKLVDRYTTDPNFKFLHDCISDHFADCLKKDLEFLKSGSPTKISLAAKWCPSVDSSFDRSTLLCETIAKRIFPREEYEGVEEAHYAYRVRDRLRKDVLVPLRKVLELPEVFIGANQWGLIPYNRVASVAMKFYKEKFLKHDKERFEKYLEDVKAGKTTIAAGALLPHEIIESLRDGDGEVAELQWKRIVDDLLKKGKMRNCLAVCDVSGRKVITFSRKPQLHVIEGDDLKSKTKFVRNMDWGMNTDFQKVFDRILDVAVNGNLKEDQMIKRIFVFSDMEFDQASANSWETDYQAITRKYRKKGYGSAVPQIVFWNLRDSKATPVPSTQKGVALVSGFSKNLLTLFLDNEGDISPVEAMEAAIAGPEYQKLVVLD